BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121241.7 + phase: 0 /pseudo
         (69 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TRPC_HELPY (O25867) Tryptophan biosynthesis protein trpCF [Inclu...    28  4.4
YD01_METJA (Q58697) Hypothetical ATP-binding protein MJ1301            27  9.7
GRPE_THETN (Q8RB69) GrpE protein (HSP-70 cofactor)                     27  9.7

>TRPC_HELPY (O25867) Tryptophan biosynthesis protein trpCF
          [Includes: Indole-3-glycerol phosphate synthase (EC
          4.1.1.48) (IGPS); N-(5'-phospho-ribosyl)anthranilate
          isomerase (EC 5.3.1.24) (PRAI)]
          Length = 452

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 2/51 (3%)

Query: 5  PSERDFKGEASSDKSKSTLERTKEETGWPSFRQVVDLLKL--SLEEFTSSI 53
          PS+RDFK      K+   LE  K        R+  DLLK+  + E+F S I
Sbjct: 31 PSDRDFKKALLEKKTSFILECKKASPSKGLIRKDFDLLKITKTYEKFASCI 81


>YD01_METJA (Q58697) Hypothetical ATP-binding protein MJ1301
          Length = 400

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 9   DFKGEASSDKSKSTLERTKEETGWPSFRQVVDLLKLSLEEFTSSILKFMSK 59
           DF  + ++ K K  LE  KEE     +++VVD LKL  E++    +K   K
Sbjct: 316 DFMLKDATQKLKYFLEDVKEEDE-ELYKKVVDALKLFKEDYEIEDIKIPKK 365


>GRPE_THETN (Q8RB69) GrpE protein (HSP-70 cofactor)
          Length = 204

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 5  PSERDFKGEASSDKSKSTLERTKEETGWPSFRQVVDLLKLSLEE 48
          PSE +   E   +K ++ +E+ KE    PS  ++V+ L+  LEE
Sbjct: 25 PSELEQSEEVVEEKIETEVEQKKE----PSLEEIVEELRKKLEE 64


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.306    0.122    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,633,293
Number of Sequences: 164201
Number of extensions: 187300
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 3
length of query: 69
length of database: 59,974,054
effective HSP length: 45
effective length of query: 24
effective length of database: 52,585,009
effective search space: 1262040216
effective search space used: 1262040216
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)