BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121241.11 + phase: 0 /pseudo
         (175 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SM4D_MOUSE (O09126) Semaphorin 4D precursor (Semaphorin J) (Sema...    33  0.33
APA1_PIG (P18648) Apolipoprotein A-I precursor (Apo-AI)                30  3.7

>SM4D_MOUSE (O09126) Semaphorin 4D precursor (Semaphorin J) (Sema J)
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 3   EKHALKEYAIISSDEPYDAILYPTVEGNNFEIKSALIYLVQENQFF----GSPTEDPNLH 58
           E H ++E  +    EP   +L  + +G  F    +   +VQ    F    GS  ED  L 
Sbjct: 457 EVHVIEETQLFRDFEPVLTLLLSSKKGRKFVYAGSNSGVVQAPLAFCEKHGS-CEDCVLA 515

Query: 59  VSIFLRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSLKIGSIISWDQMRKAFLSQFFPH 118
              +   S  +KA    V LH    S R     W   +   +    D+ +++F   FF H
Sbjct: 516 RDPYCAWSPAIKA---CVTLHQEEASSR----GWIQDMSGDTSSCLDKSKESFNQHFFKH 568

Query: 119 SKTAQLRIKSHSSLKKMV 136
             TA+L+    S+L ++V
Sbjct: 569 GGTAELKCFQKSNLARVV 586


>APA1_PIG (P18648) Apolipoprotein A-I precursor (Apo-AI)
          Length = 265

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/37 (45%), Positives = 24/37 (63%), Gaps = 2/37 (5%)

Query: 65  LSGTLKANQEAVRLHLFPFS--LRDRASAWFHSLKIG 99
           L   L+A+ EA+R H+ P+S  LR R +A F +LK G
Sbjct: 171 LRDRLRAHVEALRQHVAPYSDDLRQRMAARFEALKEG 207


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.326    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,393,813
Number of Sequences: 164201
Number of extensions: 660746
Number of successful extensions: 2019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2019
Number of HSP's gapped (non-prelim): 2
length of query: 175
length of database: 59,974,054
effective HSP length: 103
effective length of query: 72
effective length of database: 43,061,351
effective search space: 3100417272
effective search space used: 3100417272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)