BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121238.7 - phase: 0
(83 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YDFC_SCHPO (Q10484) Hypothetical protein C17C9.12 in chromosome I 38 0.005
GC2_HUMAN (P01859) Ig gamma-2 chain C region 34 0.076
PC15_HUMAN (Q96QU1) Protocadherin 15 precursor 29 2.5
LCYB_ARATH (Q38933) Lycopene beta cyclase, chloroplast precursor... 28 5.5
BLM_CHICK (Q9I920) Bloom's syndrome protein homolog (EC 3.6.1.-)... 28 5.5
TS17_CAEEL (Q11098) Tetraspanin 17 27 7.1
NID2_MOUSE (O88322) Nidogen-2 precursor (NID-2) (Entactin-2) 27 7.1
IDH_SYNY3 (P80046) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)... 27 7.1
E75C_DROME (P13055) Ecdysone-induced protein 75B isoform C (E75-C) 27 7.1
Z198_MOUSE (Q9CU65) Zinc finger protein 198 (Fragment) 27 9.3
Z198_HUMAN (Q9UBW7) Zinc finger protein 198 (Fused in myeloproli... 27 9.3
YFCK_ECOLI (P77182) Hypothetical UPF0209 protein yfcK 27 9.3
TTKA_DROME (P42282) Tramtrack protein, alpha isoform (Tramtrack ... 27 9.3
SOK1_YEAST (P40317) SOK1 protein 27 9.3
LRP2_RAT (P98158) Low-density lipoprotein receptor-related prote... 27 9.3
LCYB_CAPAN (Q43415) Lycopene beta cyclase, chloroplast precursor... 27 9.3
EZRI_HUMAN (P15311) Ezrin (p81) (Cytovillin) (Villin 2) 27 9.3
AHNK_HUMAN (Q09666) Neuroblast differentiation associated protei... 27 9.3
A1G2_HUMAN (O75843) Adapter-related protein complex 1 gamma 2 su... 27 9.3
>YDFC_SCHPO (Q10484) Hypothetical protein C17C9.12 in chromosome I
Length = 319
Score = 37.7 bits (86), Expect = 0.005
Identities = 23/70 (32%), Positives = 36/70 (50%), Gaps = 2/70 (2%)
Query: 1 MQALEEAP-PDMQCKDKFLLQSIVARPGATTKDITSDMFYKDSGYEVKESKFRAVCVAPP 59
+Q L+ P P +C+DKFL+QS +P DI +D++ + S + E K R V P
Sbjct: 66 LQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDI-ADIWTQVSKANISERKIRCVYSEGP 124
Query: 60 PSPNPPLSVH 69
+ N + H
Sbjct: 125 STANAHANAH 134
>GC2_HUMAN (P01859) Ig gamma-2 chain C region
Length = 326
Score = 33.9 bits (76), Expect = 0.076
Identities = 19/62 (30%), Positives = 32/62 (50%), Gaps = 2/62 (3%)
Query: 8 PPDMQCKDKFLLQSIVARPGAT--TKDITSDMFYKDSGYEVKESKFRAVCVAPPPSPNPP 65
P +Q + L S+V P + T+ T ++ +K S +V ++ R CV PP P PP
Sbjct: 54 PAVLQSSGLYSLSSVVTVPSSNFGTQTYTCNVDHKPSNTKVDKTVERKCCVECPPCPAPP 113
Query: 66 LS 67
++
Sbjct: 114 VA 115
>PC15_HUMAN (Q96QU1) Protocadherin 15 precursor
Length = 1955
Score = 28.9 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 53 AVCVAPPPSPNPPLSVHASESLDQVSFYFI 82
A APPP P PP H E L S F+
Sbjct: 1430 APVAAPPPPPPPPPGAHLYEELGDSSILFL 1459
>LCYB_ARATH (Q38933) Lycopene beta cyclase, chloroplast precursor
(EC 1.14.-.-)
Length = 501
Score = 27.7 bits (60), Expect = 5.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 21 SIVARPGATTKDITSDMF--YKDSGYEVKESKFRAVCVAPPPSPNPPL 66
S+VARPG +DI M K G VK + CV P P P L
Sbjct: 299 SLVARPGLRMEDIQERMAARLKHLGINVKRIEEDERCVIPMGGPLPVL 346
>BLM_CHICK (Q9I920) Bloom's syndrome protein homolog (EC 3.6.1.-)
(Fragment)
Length = 1142
Score = 27.7 bits (60), Expect = 5.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 41 DSGYEVKESKFRAVCVAPPPSPNPPLSVHASESLDQVS 78
D+ Y KE+ +C+ P P+P ++ S SL + S
Sbjct: 196 DTSYSSKETDQEVICLKPAALPSPKVNGKGSTSLSRPS 233
>TS17_CAEEL (Q11098) Tetraspanin 17
Length = 243
Score = 27.3 bits (59), Expect = 7.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 34 TSDMFYKDSGYEVKESKFRAVCVAPPPSPNPPLSVHASESLDQVSFY 80
T +FYKD Y VKE+ V + P + +E +D++ FY
Sbjct: 75 TLSLFYKDKVYSVKENVREIVKSKYGVMTSEPENKMVTEFIDKLQFY 121
>NID2_MOUSE (O88322) Nidogen-2 precursor (NID-2) (Entactin-2)
Length = 1403
Score = 27.3 bits (59), Expect = 7.1
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 42 SGYEVKESKFRAVCVAPPPSP 62
SGYE + + + +APPP+P
Sbjct: 854 SGYEFADDQHTCILIAPPPNP 874
>IDH_SYNY3 (P80046) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
(Oxalosuccinate decarboxylase) (IDH) (NADP+-specific
ICDH) (IDP)
Length = 475
Score = 27.3 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 39 YKDSGYEVKESKFRAVCVAPPPS-------PNPPLSVHAS 71
++D GYE+ ++FRA CV S NP L++ A+
Sbjct: 248 FRDWGYELATTEFRAECVTERESWICGNKESNPDLTIEAN 287
>E75C_DROME (P13055) Ecdysone-induced protein 75B isoform C (E75-C)
Length = 1443
Score = 27.3 bits (59), Expect = 7.1
Identities = 16/53 (30%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Query: 21 SIVARPGATTKDITSDMFYKDSGYEVKESKFRAVCVAPPPSPNPPLSVHASES 73
S + R + +S+M ++ + + S +V + PPP P PP HAS S
Sbjct: 365 SHIFRTPVVSSSSSSNMHHQQQQQQQQSSLGNSV-MRPPPPPPPPKVKHASSS 416
>Z198_MOUSE (Q9CU65) Zinc finger protein 198 (Fragment)
Length = 988
Score = 26.9 bits (58), Expect = 9.3
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 5/55 (9%)
Query: 10 DMQCKDKFLLQSIVARPGATTKDITSDMFYKDSGYEVKESKFRAVCVAPPPSPNP 64
D C +F Q P TT+ ++ Y D G + +K APPPSP P
Sbjct: 403 DQHCLLRFYCQQ--NEPNMTTQKGPENLHY-DQGCQTSRTKMTGS--APPPSPTP 452
>Z198_HUMAN (Q9UBW7) Zinc finger protein 198 (Fused in
myeloproliferative disorders protein) (Rearranged in
atypical myeloproliferative disorder protein)
Length = 1377
Score = 26.9 bits (58), Expect = 9.3
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 5/55 (9%)
Query: 10 DMQCKDKFLLQSIVARPGATTKDITSDMFYKDSGYEVKESKFRAVCVAPPPSPNP 64
D C +F Q P TT+ ++ Y D G + +K APPPSP P
Sbjct: 792 DQHCLLRFYCQQ--NEPNMTTQKGPENLHY-DQGCQTSRTKMTGS--APPPSPTP 841
>YFCK_ECOLI (P77182) Hypothetical UPF0209 protein yfcK
Length = 668
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 4/46 (8%)
Query: 9 PDMQCKDKFLLQSIVARPGATTKDITSDMFYK----DSGYEVKESK 50
PDM ++ F + +ARPG T TS F + D+G+ +++ K
Sbjct: 186 PDMWTQNLFNAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRK 231
>TTKA_DROME (P42282) Tramtrack protein, alpha isoform (Tramtrack
p88) (Fushi tarazu repressor protein)
Length = 813
Score = 26.9 bits (58), Expect = 9.3
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 2 QALEEAPPDMQCKDKFLLQSIVARPGATTKDITSDMFYKDSGYEVKESKFRAVC------ 55
+ LE+ +D L+ V A +D + D GY+ A
Sbjct: 714 EQLEQQNASFDSRDSSLILPDVKMEHAEDQDAEQEAELSDGGYDASNPAAAAAAMLSLQQ 773
Query: 56 ---------VAPPPSPNPPLSVHASE 72
++P PSP PP S +E
Sbjct: 774 DVIIKDEIQISPSPSPTPPASCAVAE 799
>SOK1_YEAST (P40317) SOK1 protein
Length = 901
Score = 26.9 bits (58), Expect = 9.3
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 28 ATTKDITSDMFYKDSGYEVK-ESKFRAVCVAPPPSPNPPLSVHASESLD 75
+T +T+ F S +++ E + + P P P PP+++ + +D
Sbjct: 332 STATSMTNQSFLSSSNFDLTLEDRINYIKATPTPVPFPPINLQGLKEID 380
>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2
precursor (Megalin) (Glycoprotein 330) (gp330)
Length = 4660
Score = 26.9 bits (58), Expect = 9.3
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 39 YKDSGYEVKESKFRAVCVAPPPSPNPP 65
Y + EVK+ AV VAPPPSP+ P
Sbjct: 4606 YAEMDSEVKD----AVAVAPPPSPSLP 4628
>LCYB_CAPAN (Q43415) Lycopene beta cyclase, chloroplast precursor
(EC 1.14.-.-)
Length = 498
Score = 26.9 bits (58), Expect = 9.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 21 SIVARPGATTKDITSDMFYKDS--GYEVKESKFRAVCVAPPPSPNPPL 66
S+VARPG DI M + S G +VK + CV P P P L
Sbjct: 298 SLVARPGLGMDDIQERMVARLSHLGIKVKSIEEDEHCVIPMGGPLPVL 345
>EZRI_HUMAN (P15311) Ezrin (p81) (Cytovillin) (Villin 2)
Length = 585
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 48 ESKFRAVCVAPPPSPNP---PLSVHASESL 74
+ + V APPP P P P+S H ESL
Sbjct: 459 KEELHLVMTAPPPPPPPVYEPVSYHVQESL 488
>AHNK_HUMAN (Q09666) Neuroblast differentiation associated protein
AHNAK (Desmoyokin) (Fragments)
Length = 2960
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 29 TTKDITSDMFYKDSGYEVKESKFRAVCVAPPPSP 62
T K + M++ D +++K KF+A AP PSP
Sbjct: 2150 TKKTMFGKMYFPDVEFDIKSPKFKA--EAPLPSP 2181
>A1G2_HUMAN (O75843) Adapter-related protein complex 1 gamma 2
subunit (Gamma2-adaptin) (Adaptor protein complex AP-1
gamma-2 subunit) (G2ad)
Length = 785
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 55 CVAPPPSPNPPLSVHASESLDQVSFYFI 82
CV PPP+P P L V E + Q++ FI
Sbjct: 659 CVPPPPAPIPDLKVFEREGV-QLNLSFI 685
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,330,102
Number of Sequences: 164201
Number of extensions: 353323
Number of successful extensions: 1550
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1539
Number of HSP's gapped (non-prelim): 22
length of query: 83
length of database: 59,974,054
effective HSP length: 59
effective length of query: 24
effective length of database: 50,286,195
effective search space: 1206868680
effective search space used: 1206868680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC121238.7