BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121238.3 - phase: 0 /pseudo
         (423 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TCP4_SCHPO (P87294) Putative RNA polymerase II transcriptional c...    31  6.9

>TCP4_SCHPO (P87294) Putative RNA polymerase II transcriptional
           coactivator
          Length = 136

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 15/36 (41%), Positives = 18/36 (49%)

Query: 102 HWTTNEVNKKRCFASAFKCTKTTHDR**YESSS*IL 137
           HW  NE  KKR   S F+ T+  H R  YE    +L
Sbjct: 29  HWALNETEKKRITLSEFRGTRYVHIREYYEKDGDML 64


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.372    0.162    0.611 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,238,024
Number of Sequences: 164201
Number of extensions: 1079819
Number of successful extensions: 5665
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5664
Number of HSP's gapped (non-prelim): 1
length of query: 423
length of database: 59,974,054
effective HSP length: 113
effective length of query: 310
effective length of database: 41,419,341
effective search space: 12839995710
effective search space used: 12839995710
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.9 bits)
S2: 67 (30.4 bits)