BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121234.11 - phase: 0 /pseudo
         (92 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YIEF_ECOLI (P31465) Hypothetical protein yieF                          60  1e-09
MSUE_PSEPK (Q88J85) FMN reductase (EC 1.5.1.29)                        38  0.005
CLPB_BDEBA (Q6MIV0) Chaperone clpB                                     30  1.1
RRPL_PI3H4 (P12577) RNA polymerase beta subunit (EC 2.7.7.48) (L...    30  1.4
SSUE_ECOLI (P80644) FMN reductase (EC 1.5.1.29) (Sulfate starvat...    29  1.8
YAP1_MOUSE (P46938) 65 kDa Yes-associated protein (YAP65)              28  5.3
SP22_BACME (P35148) Anti-sigma F factor (EC 2.7.1.37) (Stage II ...    28  5.3
ACD1_XANAC (P58902) Putative acyl carrier protein phosphodiester...    28  5.3
ARVC_HUMAN (O00192) Armadillo repeat protein deleted in velo-car...    27  6.9
POLN_RRVT (P13888) Nonstructural polyprotein [Contains: Nonstruc...    27  9.0
POLN_RRVN (P13887) Nonstructural polyprotein [Contains: Nonstruc...    27  9.0

>YIEF_ECOLI (P31465) Hypothetical protein yieF
          Length = 188

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 6  IKVAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFI-DISTLPMYNTDLENEGTYPP 64
          ++V  L GS+RK S++  + R    L K A   +E+  +  I+ +P+Y+ D++ E  +P 
Sbjct: 5  LQVVTLLGSLRKGSFNGMVART---LPKIAPASMEVNALPSIADIPLYDADVQQEEGFPA 61

Query: 65 LVEAFRHKILQADSVLFASPEYNYSV 90
           VEA   +I QAD V+  +PEYNYSV
Sbjct: 62 TVEALAEQIRQADGVVIVTPEYNYSV 87


>MSUE_PSEPK (Q88J85) FMN reductase (EC 1.5.1.29)
          Length = 186

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 26/91 (28%), Positives = 41/91 (44%)

Query: 1  MATAVIKVAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFIDISTLPMYNTDLENEG 60
          M   VI+V  +SGS+R  S   GL++A +E        +E+ ++ I+ L           
Sbjct: 1  MNARVIRVVVVSGSLRAPSRTHGLLQALVERLPAVLPKLEVHWVRIAELSASLAGSLERD 60

Query: 61 TYPPLVEAFRHKILQADSVLFASPEYNYSVT 91
          +    ++     I QAD +L  SP Y  S T
Sbjct: 61 SASADLQPHLQAIEQADLLLVGSPVYRASYT 91


>CLPB_BDEBA (Q6MIV0) Chaperone clpB
          Length = 855

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 22/79 (27%), Positives = 35/79 (43%)

Query: 7   KVAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFIDISTLPMYNTDLENEGTYPPLV 66
           ++A +   I +++  + L+R   E  KG  EGI+    DI  L +     E EG      
Sbjct: 436 RLAVIDKEITELNAKNQLLREQWEFEKGGIEGIKKLKADIEDLKVAVAKAEREGDLGKAA 495

Query: 67  EAFRHKILQADSVLFASPE 85
           E    K+ +A+  L A  E
Sbjct: 496 ELKYGKLPEAEKKLKALEE 514


>RRPL_PI3H4 (P12577) RNA polymerase beta subunit (EC 2.7.7.48)
           (Large structural protein) (L protein)
          Length = 2233

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 2   ATAVIKVAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFIDISTLPMYNTDLENEGT 61
           AT V+    L+ +I K    +G+++  IEL K  T       I IS +P YN    N  +
Sbjct: 563 ATQVLSETLLANNIGKFFQENGMVKGEIELLKRLTT------ISISGVPRYNEVYNNSKS 616

Query: 62  Y 62
           +
Sbjct: 617 H 617


>SSUE_ECOLI (P80644) FMN reductase (EC 1.5.1.29) (Sulfate
          starvation-induced protein 4) (SSI4)
          Length = 191

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 21/81 (25%), Positives = 38/81 (45%), Gaps = 4/81 (4%)

Query: 6  IKVAALSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFIDISTLPMYNTDLENEGTYPPL 65
          ++V  L+GS R  S  S L+    E ++    G+++E    +       DL       P 
Sbjct: 1  MRVITLAGSPRFPSRSSSLL----EYAREKLNGLDVEVYHWNLQNFAPEDLLYARFDSPA 56

Query: 66 VEAFRHKILQADSVLFASPEY 86
          ++ F  ++ QAD ++ A+P Y
Sbjct: 57 LKTFTEQLQQADGLIVATPVY 77


>YAP1_MOUSE (P46938) 65 kDa Yes-associated protein (YAP65)
          Length = 472

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 15/40 (37%), Positives = 22/40 (54%)

Query: 44  IDISTLPMYNTDLENEGTYPPLVEAFRHKILQADSVLFAS 83
           +D+ TL     ++E E   P L EA   +IL  +SVL A+
Sbjct: 422 VDLGTLEGDAMNIEGEELMPSLQEALSSEILDVESVLAAT 461


>SP22_BACME (P35148) Anti-sigma F factor (EC 2.7.1.37) (Stage II
           sporulation protein AB)
          Length = 147

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 37  EGIEIEFIDISTLPMYNT--DLENEGTYPPLVEAFRHKILQADSVLFASPEY 86
           EGI I+ +D +  P+Y T  DLE  G    ++E F  +I    +VL  +  Y
Sbjct: 83  EGIGIDNVDEAKQPLYTTKPDLERSGMGFTIMENFMDEIRVESTVLEGTTLY 134


>ACD1_XANAC (P58902) Putative acyl carrier protein
          phosphodiesterase 1 (EC 3.1.4.14) (ACP
          phosphodiesterase 1)
          Length = 193

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 15/71 (21%), Positives = 32/71 (44%), Gaps = 4/71 (5%)

Query: 24 LIRAAIELSKGATEGIEIEFIDISTLPMYNTDLENEGTYPPL----VEAFRHKILQADSV 79
          L  A +E  +     +++ + D+   P+ +   +      P      EA   + LQAD +
Sbjct: 20 LSAAVVEQQRRLHPEVDVSYRDLDRDPIPHLTAQTLAQTDPAEAAAAEAVMQQFLQADVI 79

Query: 80 LFASPEYNYSV 90
          +  +P YN+++
Sbjct: 80 VIGAPMYNFAI 90


>ARVC_HUMAN (O00192) Armadillo repeat protein deleted in
           velo-cardio-facial syndrome
          Length = 962

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 15/51 (29%), Positives = 25/51 (48%)

Query: 11  LSGSIRKVSYHSGLIRAAIELSKGATEGIEIEFIDISTLPMYNTDLENEGT 61
           L G+++K  +     ++A   +KG    +     D STLP+ +  LE E T
Sbjct: 835 LRGTLQKDGWTKARFQSAAATAKGPKGALSPGGFDDSTLPLVDKSLEGEKT 885


>POLN_RRVT (P13888) Nonstructural polyprotein [Contains:
           Nonstructural protein NSP3; Nonstructural protein NSP4]
           (Fragment)
          Length = 1148

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 57  ENEGTYPPLVEAFRHKILQA 76
           E E TYPP ++  R K+LQA
Sbjct: 568 EEERTYPPALDEAREKLLQA 587


>POLN_RRVN (P13887) Nonstructural polyprotein [Contains: Nonstructural
            protein NSP1; Nonstructural protein NSP2; Nonstructural
            protein NSP3; Nonstructural protein NSP4]
          Length = 2479

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 57   ENEGTYPPLVEAFRHKILQA 76
            E E TYPP ++  R K+LQA
Sbjct: 1899 EEERTYPPALDEAREKLLQA 1918


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,690,609
Number of Sequences: 164201
Number of extensions: 339774
Number of successful extensions: 769
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 11
length of query: 92
length of database: 59,974,054
effective HSP length: 68
effective length of query: 24
effective length of database: 48,808,386
effective search space: 1171401264
effective search space used: 1171401264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)