BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119419.7 - phase: 0
(208 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leuci... 35 0.12
FXL5_HUMAN (Q9UKA1) F-box/LRR-repeat protein 5 (F-box and leucin... 34 0.21
FXLC_MOUSE (Q9EPX5) F-box/LRR-repeat protein 12 (F-box and leuci... 33 0.36
DCC_MOUSE (P70211) Netrin receptor DCC precursor (Tumor suppress... 32 0.81
RPBC_HELPY (O25806) Bifunctional DNA-directed RNA polymerase, be... 32 1.1
RPBC_HELPJ (Q9ZK23) Bifunctional DNA-directed RNA polymerase, be... 32 1.1
FXL5_MOUSE (Q8C2S5) F-box/LRR-repeat protein 5 (F-box and leucin... 32 1.1
FX24_HUMAN (O75426) F-box only protein 24 32 1.1
YQOD_CAEEL (Q8IG36) Hypothetical RNA-binding protein EEED8.17 in... 31 1.8
DCC_HUMAN (P43146) Netrin receptor DCC precursor (Tumor suppress... 31 1.8
RHN1_MOUSE (Q61085) Rhophilin 1 (GTP-Rho binding protein 1) 30 3.1
FX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7 act... 30 3.1
FX24_MOUSE (Q9D417) F-box only protein 24 30 3.1
MT30_YEAST (P39014) MET30 protein 30 4.0
FX15_MOUSE (Q9QZN0) F-box only protein 15 30 4.0
NBEA_MOUSE (Q9EPN1) Neurobeachin protein (Lysosomal trafficking ... 30 5.2
FX18_MOUSE (Q8K2I9) F-box only protein 18 (EC 3.6.1.-) (F-box DN... 30 5.2
FW1B_HUMAN (Q9UKB1) F-box/WD-repeat protein 11 (F-box/WD-repeat ... 30 5.2
SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohe... 29 6.8
MCRG_METFE (P12973) Methyl-coenzyme M reductase gamma subunit (E... 29 6.8
>FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and
leucine-rich repeat protein 12) (F-box protein FBL12)
Length = 326
Score = 35.0 bits (79), Expect = 0.12
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 6/41 (14%)
Query: 22 LPDDVLNHILSYLPIKTTVATGRLSRQWQH------LWKHL 56
LPD VL I SYLP++ + R+ +W+ LW+H+
Sbjct: 7 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHV 47
>FXL5_HUMAN (Q9UKA1) F-box/LRR-repeat protein 5 (F-box and
leucine-rich repeat protein 5) (F-box protein FBL4/FBL5)
(p45SKP2-like protein)
Length = 691
Score = 34.3 bits (77), Expect = 0.21
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 6/72 (8%)
Query: 2 VESNSKRQKASEENDDRISSLPDDVLNHILSYLPIKTTVATGRLSRQWQH------LWKH 55
V+ S ++ E+ I+ LP +V+ I SYL + ++S +W LWKH
Sbjct: 188 VDEKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKH 247
Query: 56 LHVLDFNEYDDY 67
L+ + + D Y
Sbjct: 248 LYPVHWARGDWY 259
>FXLC_MOUSE (Q9EPX5) F-box/LRR-repeat protein 12 (F-box and
leucine-rich repeat protein 12) (F-box protein FBL12)
Length = 326
Score = 33.5 bits (75), Expect = 0.36
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 6/41 (14%)
Query: 22 LPDDVLNHILSYLPIKTTVATGRLSRQWQH------LWKHL 56
LPD VL I SYLP++ + R+ +W+ LW+H+
Sbjct: 7 LPDLVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHV 47
>DCC_MOUSE (P70211) Netrin receptor DCC precursor (Tumor suppressor
protein DCC)
Length = 1447
Score = 32.3 bits (72), Expect = 0.81
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 71 DNRKEQLRRFVVLVNNVLHRNRHGIRKMRLTCAHSLVDDDNFRSHTVDTWVRSVIGP 127
D+RK+QL +L+ N+LH H + C SL D + S T +V GP
Sbjct: 86 DDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLADSGSIISRTAKV---TVAGP 139
>RPBC_HELPY (O25806) Bifunctional DNA-directed RNA polymerase, beta
and beta' chain (EC 2.7.7.6) [Includes: DNA-directed RNA
polymerase beta chain (Transcriptase beta chain) (RNA
polymerase beta subunit); DNA-directed RNA polymerase
beta' chain (Transcrip
Length = 2890
Score = 32.0 bits (71), Expect = 1.1
Identities = 17/48 (35%), Positives = 28/48 (57%), Gaps = 5/48 (10%)
Query: 124 VIGPQLEELELDLDLFSDDFDE-----PLDGPDFDEPLDGTDFKLPLS 166
V+ +L+ L LD+++F DD DE P+ + D P D + F+L L+
Sbjct: 1357 VLTKELQSLALDINIFGDDVDEDGAPKPIVIKEDDRPKDFSSFQLTLA 1404
>RPBC_HELPJ (Q9ZK23) Bifunctional DNA-directed RNA polymerase, beta
and beta' chain (EC 2.7.7.6) [Includes: DNA-directed RNA
polymerase beta chain (Transcriptase beta chain) (RNA
polymerase beta subunit); DNA-directed RNA polymerase
beta' chain (Transcrip
Length = 2890
Score = 32.0 bits (71), Expect = 1.1
Identities = 17/48 (35%), Positives = 28/48 (57%), Gaps = 5/48 (10%)
Query: 124 VIGPQLEELELDLDLFSDDFDE-----PLDGPDFDEPLDGTDFKLPLS 166
V+ +L+ L LD+++F DD DE P+ + D P D + F+L L+
Sbjct: 1357 VLTKELQSLALDINIFGDDVDEDGAPRPIMIKEDDRPKDFSSFQLTLA 1404
>FXL5_MOUSE (Q8C2S5) F-box/LRR-repeat protein 5 (F-box and
leucine-rich repeat protein 5)
Length = 690
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 2 VESNSKRQKASEENDDRISSLPDDVLNHILSYLPIKTTVATGRLSRQWQH------LWKH 55
V+ + + E+ I+ LP +V+ I SYL + ++S +W LWKH
Sbjct: 188 VDEKADTEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSTKWSQLAKTGSLWKH 247
Query: 56 LHVLDFNEYDDY 67
L+ + + D Y
Sbjct: 248 LYPVHWARGDWY 259
>FX24_HUMAN (O75426) F-box only protein 24
Length = 580
Score = 32.0 bits (71), Expect = 1.1
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 9 QKASEENDDRISSLPDDVLNHILSYLPIKTTVATGRLSRQWQHL 52
+K + N I P +++ HI+S+LP++ VA G+ R + +
Sbjct: 29 EKRGKGNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEV 72
>YQOD_CAEEL (Q8IG36) Hypothetical RNA-binding protein EEED8.17 in
chromosome II
Length = 310
Score = 31.2 bits (69), Expect = 1.8
Identities = 11/46 (23%), Positives = 28/46 (59%)
Query: 4 SNSKRQKASEENDDRISSLPDDVLNHILSYLPIKTTVATGRLSRQW 49
S+++ + E + ++PD +L ++S+LPI T+ R+++++
Sbjct: 227 SSTQSLASGSEQSFNLGNVPDKILRRVISFLPIHETIRLERVNKKF 272
>DCC_HUMAN (P43146) Netrin receptor DCC precursor (Tumor suppressor
protein DCC) (Colorectal cancer suppressor)
Length = 1447
Score = 31.2 bits (69), Expect = 1.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 71 DNRKEQLRRFVVLVNNVLHRNRHGIRKMRLTCAHSLVDDDNFRSHTVDTWVRSVIGP 127
D RK+QL +L+ N+LH H + C SL D + S T +V GP
Sbjct: 86 DERKQQLSNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV---AVAGP 139
>RHN1_MOUSE (Q61085) Rhophilin 1 (GTP-Rho binding protein 1)
Length = 643
Score = 30.4 bits (67), Expect = 3.1
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Query: 110 DNFRSHTVDTWVRSVIGPQLEELELDLDLFSDDFDEPLDGPDFDEPLDGTDFKLPL 165
+N T +TWVR + +L + +L L ++ E D D+P +G +P+
Sbjct: 62 ENLYRATSNTWVRETVALELSYVNSNLQLLKEELAELSTSVDVDQP-EGEGITIPM 116
>FX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7
activity) (MoKA)
Length = 1194
Score = 30.4 bits (67), Expect = 3.1
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 1 MVESNSKRQKASEENDDRISSLPDDVLNHILSYLPIKTTVATGRLSRQ 48
+++S + ++E D ++ L +VL HI YLP++ + LSR+
Sbjct: 12 VMDSEVAEEMTADEEKDYMNQLSHEVLCHIFRYLPLQDIMCMECLSRK 59
>FX24_MOUSE (Q9D417) F-box only protein 24
Length = 589
Score = 30.4 bits (67), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 9 QKASEENDDRISSLPDDVLNHILSYLPIKTTVATGR 44
+K N + P +++ HI+S+LP+K VA G+
Sbjct: 16 EKKERGNPISVQLFPPELVEHIVSFLPVKDLVALGQ 51
>MT30_YEAST (P39014) MET30 protein
Length = 640
Score = 30.0 bits (66), Expect = 4.0
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 6/46 (13%)
Query: 17 DRISSLPDDVLNHILSYLPIKTTVATGRLSRQWQHL------WKHL 56
D IS LP ++ ILSYL ++ R+ R+WQ L W H+
Sbjct: 182 DFISILPQELSLKILSYLDCQSLCNATRVCRKWQKLADDDRVWYHM 227
>FX15_MOUSE (Q9QZN0) F-box only protein 15
Length = 433
Score = 30.0 bits (66), Expect = 4.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 22 LPDDVLNHILSYLPIKTTVATGRLSRQWQHL 52
+P ++L ILSYL T V G +SR++ HL
Sbjct: 1 MPSEILVKILSYLDAVTLVCIGCVSRRFYHL 31
>NBEA_MOUSE (Q9EPN1) Neurobeachin protein (Lysosomal trafficking
regulator 2)
Length = 2936
Score = 29.6 bits (65), Expect = 5.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 93 HGIRKMRLTCAHSLVDDDNFRSHTVDTWVRSVIGPQLEELELDLD 137
H + LTC S++++ +FR HT V SV +L LD
Sbjct: 1179 HMTASVELTCTSSIMEEKDFRIHTTSDGVSSVSERELASSTKGLD 1223
>FX18_MOUSE (Q8K2I9) F-box only protein 18 (EC 3.6.1.-) (F-box DNA
helicase 1)
Length = 1042
Score = 29.6 bits (65), Expect = 5.2
Identities = 29/97 (29%), Positives = 43/97 (43%), Gaps = 10/97 (10%)
Query: 13 EENDDRISSLPDDVLNHILSYLPIKTTVATGRLSRQWQHLWKHL--HVLDFNEYDDYHRS 70
+E I LP +VL HI ++LP++ L HLW+ + L YHR
Sbjct: 204 QEVPSHICRLPSEVLRHIFAFLPVEDLYWNLSLV---CHLWREIINDPLFIPWKKLYHRY 260
Query: 71 DNRKEQLRRFVVLVNNVLHRNRHGIRKMRLTCAHSLV 107
+EQ V V+ +L + HGI K C +L+
Sbjct: 261 LINEEQA---VSKVDGIL--SSHGIEKDSDLCVLNLI 292
>FW1B_HUMAN (Q9UKB1) F-box/WD-repeat protein 11 (F-box/WD-repeat
protein 1B) (F-box and WD-repeats protein beta-TrCP2)
Length = 542
Score = 29.6 bits (65), Expect = 5.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 17 DRISSLPDDVLNH----ILSYLPIKTTVATGRLSRQWQH------LWKHL 56
D I++LP+ L+H ILSYL ++ A + ++WQ LWK L
Sbjct: 118 DFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVISEGMLWKKL 167
>SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohesin
complex subunit psm1) (Chromosome segregation protein
smc1)
Length = 1233
Score = 29.3 bits (64), Expect = 6.8
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 54 KHLHVLDFNEYDDYHR------SDNRKEQLRRFVVLVNNV-LHRNRHGIRKMRLTCAHSL 106
K + + D + YD+ HR + + E ++ +L N + + R ++RL H
Sbjct: 787 KRIGISDIHTYDEIHRTFTQSFTQKQLEFTKQKSLLENRISFEKQRVSDTRLRLERMHKF 846
Query: 107 VDDDNFRSHTVDTWV--RSVIGPQLEELELDLDLFSDDF 143
++ D ++D + R + ++ E +L+L +DF
Sbjct: 847 IEKD---QESIDNYEQNREALESEVATAEAELELLKEDF 882
>MCRG_METFE (P12973) Methyl-coenzyme M reductase gamma subunit (EC
2.8.4.1) (Coenzyme-B sulfoethylthiotransferase gamma)
Length = 249
Score = 29.3 bits (64), Expect = 6.8
Identities = 24/82 (29%), Positives = 37/82 (44%), Gaps = 6/82 (7%)
Query: 92 RHGIRKMRLTCAHSLVDDDNFRSHTVDTWVRSVIGPQLEELELDLDLFSDDFDEPLDGPD 151
R GIR + HSL D+N D R V + +++ + D+FDEP+ D
Sbjct: 147 RTGIRGKSVH-GHSLRLDEN--GMMFDMLRRQVYDEETGRVKMVKNQIGDEFDEPI---D 200
Query: 152 FDEPLDGTDFKLPLSLFTCPNL 173
EPLD K +++ N+
Sbjct: 201 LGEPLDEETLKEKTTIYRIDNI 222
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,489,841
Number of Sequences: 164201
Number of extensions: 1176547
Number of successful extensions: 2701
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2685
Number of HSP's gapped (non-prelim): 25
length of query: 208
length of database: 59,974,054
effective HSP length: 105
effective length of query: 103
effective length of database: 42,732,949
effective search space: 4401493747
effective search space used: 4401493747
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC119419.7