BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119414.8 + phase: 0 /pseudo
         (427 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...    51  6e-06
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810...    35  0.28
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein     35  0.48
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain...    31  5.3

>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
            Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 50.8 bits (120), Expect = 6e-06
 Identities = 25/59 (42%), Positives = 35/59 (58%)

Query: 290  KSTSWYVYMVGNGAISWSSMKKPIVTLSTTEAEFVAAASCSC*GIWLRRITSHIGEGQE 348
            KS++ Y++    GAISW S  +  V LSTTEAE++AA       IWL+R    +G  Q+
Sbjct: 1191 KSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK 1249


>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
           (ORF240b)
          Length = 240

 Score = 35.4 bits (80), Expect = 0.28
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 288 TEKSTSWYVYMVGNGAISWSSMKKPIVTLSTTEAEFVAAA 327
           T +ST+ +   +G   ISWS+ ++P V+ S+TE E+ A A
Sbjct: 178 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALA 217


>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
          Length = 308

 Score = 34.7 bits (78), Expect = 0.48
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 285 IHMTEKSTSWYVYMVGNGAISWSSMK-KPIVTLSTTEAEFVAAA 327
           IH    ST  YV ++    ++WSS K K ++ + +TEAE++ A+
Sbjct: 259 IHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITAS 302


>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
            Copia VLP protein; Copia protease (EC 3.4.23.-)]
          Length = 1409

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 17/55 (30%), Positives = 31/55 (55%), Gaps = 1/55 (1%)

Query: 290  KSTSWYVY-MVGNGAISWSSMKKPIVTLSTTEAEFVAAASCSC*GIWLRRITSHI 343
            KST+ Y++ M     I W++ ++  V  S+TEAE++A        +WL+ + + I
Sbjct: 1264 KSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSI 1318


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.372    0.166    0.671 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,310,064
Number of Sequences: 164201
Number of extensions: 1236308
Number of successful extensions: 4392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4389
Number of HSP's gapped (non-prelim): 4
length of query: 427
length of database: 59,974,054
effective HSP length: 113
effective length of query: 314
effective length of database: 41,419,341
effective search space: 13005673074
effective search space used: 13005673074
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.9 bits)
S2: 67 (30.4 bits)