BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC119408.7 + phase: 0 /pseudo
(218 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RIR2_SCHPO (P36603) Ribonucleoside-diphosphate reductase small c... 33 0.51
PARE_HAEIN (P43703) Topoisomerase IV subunit B (EC 5.99.1.-) 32 1.5
PILI_PSEAE (P43502) Protein pilI 31 2.0
PYRH_METJA (Q58656) Probable uridylate kinase (EC 2.7.4.-) (UK) ... 31 2.5
L4R1_MOUSE (O88855) Leukotriene B4 receptor 1 (LTB4-R 1) 30 4.3
D4DR_HUMAN (P21917) D(4) dopamine receptor (D(2C) dopamine recep... 30 5.7
SCA4_RICPR (Q9ZD49) Antigenic heat-stable 120 kDa protein (PS120... 29 9.7
RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC ... 29 9.7
>RIR2_SCHPO (P36603) Ribonucleoside-diphosphate reductase small
chain (EC 1.17.4.1) (Ribonucleotide reductase small
subunit)
Length = 391
Score = 33.1 bits (74), Expect = 0.51
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 97 VGIAAPYFARILPIDLATFNGEILCQ-----PDAFLCSVNDVK---VSNTVDQRGRNVVA 148
V I YF LP+ L N +++CQ D L ++ + K V+N D +A
Sbjct: 294 VDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDKYYNVTNPFDFMENISLA 353
Query: 149 GAEVFLRQKLSGQGLAFILGGGSVVQK 175
G F +K+S +A ++ G +K
Sbjct: 354 GKTNFFEKKVSDYQIAGVMSGTKRAEK 380
>PARE_HAEIN (P43703) Topoisomerase IV subunit B (EC 5.99.1.-)
Length = 632
Score = 31.6 bits (70), Expect = 1.5
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 118 EILCQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKIL 177
E++ PD + V D VD V+G EV L + + GG K
Sbjct: 56 EVILHPDQSI-EVTDNGRGMPVDIHPTEGVSGVEVILTK---------LHAGGKFSNKNY 105
Query: 178 E-VGEVLAVDVSCIVAVTSTVDIQIKYNGPARRTMF 212
E G + V +S + A++ VDIQ+K NG + F
Sbjct: 106 EFAGGLHGVGISVVNALSERVDIQVKRNGEIYKIAF 141
>PILI_PSEAE (P43502) Protein pilI
Length = 178
Score = 31.2 bits (69), Expect = 2.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 139 VDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKILEVGEVL 183
+DQR R + AG S G+ F +GG V + EVGEVL
Sbjct: 14 IDQRCRRLAAGLPAQQEAVQSWSGIGFRMGGRFFVAPMGEVGEVL 58
>PYRH_METJA (Q58656) Probable uridylate kinase (EC 2.7.4.-) (UK)
(Uridine monophosphate kinase) (UMP kinase)
Length = 226
Score = 30.8 bits (68), Expect = 2.5
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 142 RGRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKILEVGE-------------VLAVDVS 188
+ ++ A +F + K G +A ++GGG ++ +E+G ++A ++
Sbjct: 19 KAEKIMEYANIFKKIKDEGHEVAIVVGGGKTAREYIEIGRELGASESFCDELGIMATRMN 78
Query: 189 CIVAVTSTVDIQIK 202
++ +T+ D IK
Sbjct: 79 AMILITALGDYSIK 92
>L4R1_MOUSE (O88855) Leukotriene B4 receptor 1 (LTB4-R 1)
Length = 351
Score = 30.0 bits (66), Expect = 4.3
Identities = 33/120 (27%), Positives = 58/120 (47%), Gaps = 8/120 (6%)
Query: 66 LPENEVGIWQWLFG---KTVTNIVVRNSGPSDGFVGIAAPYFARILPIDLATFNGEILCQ 122
LP N +W L +TVT ++V N +D V + AP+F L +F E+ C+
Sbjct: 35 LPGNSFVVWSILKRMQKRTVTALLVLNLALADLAVLLTAPFFLHFLARGTWSFR-EMGCR 93
Query: 123 PDAFLCSVNDVK--VSNTVDQRGRNVVAGAEVFLRQKLSGQGLA-FILGGGSVVQKILEV 179
++C ++ + T+ R+ +A A F+ QK+ + A ++L G VV +L +
Sbjct: 94 LCHYVCGISMYASVLLITIMSLDRS-LAVARPFMSQKVRTKAFARWVLAGIWVVSFLLAI 152
>D4DR_HUMAN (P21917) D(4) dopamine receptor (D(2C) dopamine
receptor)
Length = 467
Score = 29.6 bits (65), Expect = 5.7
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 143 GRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKILEVGEVLAVDVSCIVAVTSTVDIQIK 202
GR AGA L+GQG A ++GG +L +G VLA + V+V + +Q
Sbjct: 15 GRGPAAGASAGASAGLAGQGAAALVGG------VLLIGAVLAGNSLVCVSVATERALQTP 68
Query: 203 YN 204
N
Sbjct: 69 TN 70
>SCA4_RICPR (Q9ZD49) Antigenic heat-stable 120 kDa protein (PS120)
(120 kDa antigen) (Protein PS 120)
Length = 1022
Score = 28.9 bits (63), Expect = 9.7
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 172 VVQKILEVGEVLAVDVSCIVAVTSTVDIQIKYN 204
+++K++++G + D+S +VAV S +D IK N
Sbjct: 526 ILEKVVDIGLSIKDDISRVVAVDSIMDTVIKSN 558
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
chain) (RNA polymerase beta' subunit)
Length = 1413
Score = 28.9 bits (63), Expect = 9.7
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 144 RNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKI--LEVGEV 182
++VV G R+K++G+G IL G + +K+ LE+ E+
Sbjct: 504 QDVVLGLYYMTREKINGKGEGMILNGSNEAEKVYRLEIAEL 544
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,217,063
Number of Sequences: 164201
Number of extensions: 1008419
Number of successful extensions: 2020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2016
Number of HSP's gapped (non-prelim): 8
length of query: 218
length of database: 59,974,054
effective HSP length: 106
effective length of query: 112
effective length of database: 42,568,748
effective search space: 4767699776
effective search space used: 4767699776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC119408.7