BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119408.12 + phase: 0 /partial
         (467 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

KCY_MYCPU (Q98RC0) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidin...    34  0.70
ACH2_XENLA (P05377) Acetylcholine receptor protein, alpha-1B cha...    34  0.70
MSP1_PLAF3 (P19598) Merozoite surface protein 1 precursor (Meroz...    32  4.6
SYI_METJA (Q58357) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...    31  7.8

>KCY_MYCPU (Q98RC0) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine
           monophosphate kinase) (CMP kinase)
          Length = 221

 Score = 34.3 bits (77), Expect = 0.70
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 67  LNATLVVPELDHNSFWKDDSDFANIFDVNWFINYLAKDVTIVKRVPDKVMRSMDKPPYTM 126
           LN   + P L      +  S+ + I D+  FIN +  D   VK+    V+   D    T 
Sbjct: 75  LNNQDIAPYLRDEKISEQASEISTILDIRNFINQIIIDTMKVKK--GYVIEGRDT---TF 129

Query: 127 RVPRKSDPEYYLDQVLPILLRRRVLQ 152
           ++   ++   +LD   PI  RRRVLQ
Sbjct: 130 KLAPDAEVRIFLDASSPIRARRRVLQ 155


>ACH2_XENLA (P05377) Acetylcholine receptor protein, alpha-1B chain
           precursor
          Length = 457

 Score = 34.3 bits (77), Expect = 0.70
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 278 YLYVASGEIYGGDETMQPLRDLFPNIYTKEMLAEEELKPFLSFSSRLAAVDYIVCDESNV 337
           +L++A+G ++G D   + + DLF N Y K +   E  K  +  +  L  +  I  DE N 
Sbjct: 10  FLFIAAGTVFGTDHETRLIGDLFAN-YNKVVRPVETYKDQVVVTVGLQLIQLINVDEVNQ 68

Query: 338 FVANN 342
            V+ N
Sbjct: 69  IVSTN 73


>MSP1_PLAF3 (P19598) Merozoite surface protein 1 precursor (Merozoite
            surface antigens) (PMMSA) (P190)
          Length = 1682

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 23/86 (26%), Positives = 38/86 (43%), Gaps = 8/86 (9%)

Query: 94   VNWFINYLAK---DVTIVKRVPDKVMRSMDKPPYTMRVPRKSDPEYYLDQVLPILLRRRV 150
            ++++   LAK   D+  +K+V  +       PP T   P K+D +    + LP L     
Sbjct: 1408 ISYYEKVLAKYKDDLESIKKVIKEEKEFPSSPPTTPPSPAKTDEQKKESKFLPFLTNIET 1467

Query: 151  LQLTKFDYRLANDLDDELQKLRCRVN 176
            L        L N +DD L  L+ ++N
Sbjct: 1468 LY-----NNLVNKIDDYLINLKAKIN 1488


>SYI_METJA (Q58357) Isoleucyl-tRNA synthetase (EC 6.1.1.5)
           (Isoleucine--tRNA ligase) (IleRS)
          Length = 1039

 Score = 30.8 bits (68), Expect = 7.8
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 84  DDSDFANIFDVN--WFINYLAKDVTIVKRVPDKVMRSMDKPPYTMRVPRK 131
           ++S F N  +V+  +    L +D+ IV+ V D + R  D+  YT+R P K
Sbjct: 782 EESIFMNKIEVDEEFIDEELERDMAIVRDVVDAIYRGRDRIKYTLRYPLK 831


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,545,309
Number of Sequences: 164201
Number of extensions: 2570850
Number of successful extensions: 4936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4935
Number of HSP's gapped (non-prelim): 4
length of query: 467
length of database: 59,974,054
effective HSP length: 114
effective length of query: 353
effective length of database: 41,255,140
effective search space: 14563064420
effective search space used: 14563064420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)