BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149600.13 + phase: 0 /pseudo
(232 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42103.1| unknown protein [Arabidopsis thaliana] gi|306805... 297 2e-79
gb|AAG51340.1| unknown protein; 28504-31237 [Arabidopsis thaliana] 297 2e-79
gb|AAN15403.1| putative RNA-binding protein [Arabidopsis thalian... 291 8e-78
gb|AAR01750.1| expressed protein [Oryza sativa (japonica cultiva... 291 1e-77
ref|NP_911570.1| KH domain-like protein [Oryza sativa (japonica ... 286 2e-76
dbj|BAD06470.1| hypothetical protein [Nicotiana tabacum] 281 1e-74
dbj|BAD82121.1| QUAKING isoform 5-like [Oryza sativa (japonica c... 258 1e-67
gb|AAV25646.1| unknown protein [Oryza sativa (japonica cultivar-... 247 2e-64
dbj|BAD73347.1| putative QUAKING isoform 5 [Oryza sativa (japoni... 245 8e-64
ref|XP_467536.1| putative KH domain protein [Oryza sativa (japon... 238 8e-62
ref|NP_915982.1| P0454H12.18 [Oryza sativa (japonica cultivar-gr... 238 8e-62
ref|XP_463561.1| P0408G07.16 [Oryza sativa (japonica cultivar-gr... 234 2e-60
gb|AAN41273.1| putative RNA-binding protein [Arabidopsis thalian... 231 1e-59
gb|AAL87326.1| putative RNA-binding protein [Arabidopsis thaliana] 229 5e-59
emb|CAB79503.1| putative protein [Arabidopsis thaliana] gi|29824... 228 8e-59
gb|AAM14070.1| unknown protein [Arabidopsis thaliana] 228 8e-59
dbj|BAC43277.1| putative elongation factor [Arabidopsis thaliana... 224 1e-57
gb|AAL84995.1| At1g09660/F21M12_5 [Arabidopsis thaliana] gi|1693... 224 1e-57
pir||D86230 hypothetical protein [imported] - Arabidopsis thalia... 200 2e-50
ref|NP_973800.1| KH domain-containing quaking protein, putative ... 177 3e-43
>dbj|BAC42103.1| unknown protein [Arabidopsis thaliana] gi|30680583|ref|NP_187474.2|
KH domain-containing protein [Arabidopsis thaliana]
Length = 283
Score = 297 bits (760), Expect = 2e-79
Identities = 155/240 (64%), Positives = 189/240 (78%), Gaps = 13/240 (5%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSS---FTG 57
MQVLP+C+RLLNQEI R +G +M NQGF+D+DR++ S P P+L + S G
Sbjct: 46 MQVLPICSRLLNQEIFRITG---MMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGG 102
Query: 58 WNSLSHE------GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNS 111
WN L E G+ ++WQ APA +S+ VK++LRLD+P D +P FNFVGRLLGPRGNS
Sbjct: 103 WNGLPPERIGGPHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNS 162
Query: 112 LKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLR 171
LKRVEATTGCRV+IRGKGSIKD +KEE L+G+PG+EHLNE LHILIEA+LP+++VD++LR
Sbjct: 163 LKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLR 222
Query: 172 QAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAKT 231
QAQEIIEEL+KPVDESQD KRQQLRELA+LNS+ RE SP SGS+SPF SN M KR KT
Sbjct: 223 QAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAM-KRPKT 281
>gb|AAG51340.1| unknown protein; 28504-31237 [Arabidopsis thaliana]
Length = 319
Score = 297 bits (760), Expect = 2e-79
Identities = 155/240 (64%), Positives = 189/240 (78%), Gaps = 13/240 (5%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSS---FTG 57
MQVLP+C+RLLNQEI R +G +M NQGF+D+DR++ S P P+L + S G
Sbjct: 82 MQVLPICSRLLNQEIFRITG---MMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGG 138
Query: 58 WNSLSHE------GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNS 111
WN L E G+ ++WQ APA +S+ VK++LRLD+P D +P FNFVGRLLGPRGNS
Sbjct: 139 WNGLPPERIGGPHGMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNS 198
Query: 112 LKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLR 171
LKRVEATTGCRV+IRGKGSIKD +KEE L+G+PG+EHLNE LHILIEA+LP+++VD++LR
Sbjct: 199 LKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLR 258
Query: 172 QAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAKT 231
QAQEIIEEL+KPVDESQD KRQQLRELA+LNS+ RE SP SGS+SPF SN M KR KT
Sbjct: 259 QAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAM-KRPKT 317
>gb|AAN15403.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|3786011|gb|AAC67357.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|17978787|gb|AAL47387.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|17473662|gb|AAL38288.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|14596033|gb|AAK68744.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|25408604|pir||B84807 probable RNA-binding protein
[imported] - Arabidopsis thaliana
gi|30687577|ref|NP_850296.1| KH domain-containing
protein [Arabidopsis thaliana]
gi|15224909|ref|NP_181395.1| KH domain-containing
protein [Arabidopsis thaliana]
Length = 286
Score = 291 bits (746), Expect = 8e-78
Identities = 159/243 (65%), Positives = 188/243 (76%), Gaps = 17/243 (6%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSSFTG--- 57
MQVLP+C+RLLNQE+ R SG +M NQGF D+DR++ S P +L + S TG
Sbjct: 47 MQVLPICSRLLNQEMFRVSG---MMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGG 103
Query: 58 WNSLSHE------GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNS 111
WN LS E G+ +DWQ AP +S+ VK++LRL+IP DN+P FNFVGRLLGPRGNS
Sbjct: 104 WNGLSQERLSGTPGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNS 163
Query: 112 LKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLR 171
LKRVEATTGCRVFIRGKGSIKD +KE+ LRGRPG+EHLNE LHILIEA+LP ++V++RLR
Sbjct: 164 LKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLR 223
Query: 172 QAQEIIEELLKPVDESQDIYKRQQLRELAMLNS-SFREESPQLS--GSLSPFTSNEMIKR 228
QAQEIIEELLKPVDESQD KRQQLRELA+LNS + REESP S GS+SPF S+ KR
Sbjct: 224 QAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG--KR 281
Query: 229 AKT 231
KT
Sbjct: 282 PKT 284
>gb|AAR01750.1| expressed protein [Oryza sativa (japonica cultivar-group)]
gi|50919389|ref|XP_470091.1| expressed protein [Oryza
sativa (japonica cultivar-group)]
Length = 281
Score = 291 bits (744), Expect = 1e-77
Identities = 151/240 (62%), Positives = 186/240 (76%), Gaps = 14/240 (5%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSS---FTG 57
MQVLP+C++LL+QEI+R S ++ N GF D+DR +F S P P+ + S F+
Sbjct: 45 MQVLPICSKLLSQEIMRVSS---IVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSP 101
Query: 58 WNSLSHE------GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNS 111
WN L E G ++DWQ AP +SH+VKK+LRLD+P D++P FNFVGR+LGPRGNS
Sbjct: 102 WNGLHQERLGFPQGTSMDWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNS 161
Query: 112 LKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLR 171
LKRVEA+TGCRVFIRGKGSIKD KE+ LRG+PG+EHL++PLHILIEAE P +++D RLR
Sbjct: 162 LKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLR 221
Query: 172 QAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAKT 231
AQE+IEELLKPVDESQD YKRQQLRELAMLNS+ RE+SP GS+SPF SN +KRAKT
Sbjct: 222 HAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTLREDSPH-PGSVSPF-SNGGMKRAKT 279
>ref|NP_911570.1| KH domain-like protein [Oryza sativa (japonica cultivar-group)]
gi|24060154|dbj|BAC21599.1| KH domain-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 286
Score = 286 bits (733), Expect = 2e-76
Identities = 149/243 (61%), Positives = 185/243 (75%), Gaps = 18/243 (7%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTT---SSFTG 57
MQVLP+C+RLLNQEI+R S ++ + GF+D+DR ++ S P P + + F
Sbjct: 46 MQVLPICSRLLNQEIMRVSS---MVNDHGFNDFDRRRYRSPSPMSSPIMRPNLHGNGFGP 102
Query: 58 WNSLSHE----------GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGP 107
WN + E G ++DWQ AP S+IVKK++R+++P D +P FNFVGR+LGP
Sbjct: 103 WNGIHQERLGFPPPPPPGTSMDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGP 162
Query: 108 RGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVD 167
RGNSLKRVEA+TGCRVFIRGKGSIKD DKEE L+G+PG+EHLN+PLHILIEAELP N++D
Sbjct: 163 RGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIID 222
Query: 168 LRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIK 227
RLRQAQEI++ELLKPVDESQD YKRQQLRELAMLNS+ RE+SP GS+SPF SN +K
Sbjct: 223 TRLRQAQEIMDELLKPVDESQDYYKRQQLRELAMLNSTLREDSPH-PGSVSPF-SNGGMK 280
Query: 228 RAK 230
RAK
Sbjct: 281 RAK 283
>dbj|BAD06470.1| hypothetical protein [Nicotiana tabacum]
Length = 285
Score = 281 bits (719), Expect = 1e-74
Identities = 150/240 (62%), Positives = 183/240 (75%), Gaps = 13/240 (5%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSSFTG--- 57
MQVLP+C+ LLNQEILR SG + NQ + DR + S+ P ++ + TG
Sbjct: 48 MQVLPICSTLLNQEILRVSG---MTPNQILGELDRFRHRSSSPMASANVMSNVGGTGLGG 104
Query: 58 WNSLSHE------GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNS 111
W+ L+ E G+++DW APA +S+ VK++LRL+IP + +P FNFVGRLLGPRGNS
Sbjct: 105 WSGLAQERLSGPPGMSMDWHGAPASPSSYTVKRILRLEIPLETYPNFNFVGRLLGPRGNS 164
Query: 112 LKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLR 171
LK+VEATTGCRV+IRG+GSIKD D+EE LRG PG+EHLNEPLHILIEA+LP N+VD+RLR
Sbjct: 165 LKQVEATTGCRVYIRGRGSIKDPDQEENLRGIPGYEHLNEPLHILIEADLPANIVDIRLR 224
Query: 172 QAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAKT 231
QAQEIIEELLKPVDESQD KRQQL ELAMLNS+FRE+SP SGS+SPF S +KR KT
Sbjct: 225 QAQEIIEELLKPVDESQDYIKRQQLHELAMLNSNFREDSPGPSGSVSPFNSGG-LKRPKT 283
>dbj|BAD82121.1| QUAKING isoform 5-like [Oryza sativa (japonica cultivar-group)]
gi|56784311|dbj|BAD82237.1| QUAKING isoform 5-like
[Oryza sativa (japonica cultivar-group)]
Length = 290
Score = 258 bits (658), Expect = 1e-67
Identities = 137/242 (56%), Positives = 172/242 (70%), Gaps = 17/242 (7%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSS---FTG 57
+QVLP CTRLLNQEILRAS L N F D +R++ GS P +P L G
Sbjct: 53 VQVLPFCTRLLNQEILRASS---LPPNHNFVDPERIEHGS--PLRLPGLPVNGQPMDLEG 107
Query: 58 WNSLSHEGLNV------DWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNS 111
W+ + E + V W PAI+ + +VKK++RLD+P D +P +NFVGRLLGPRGNS
Sbjct: 108 WSGMQTENMRVLQASSMGWNGPPAITGTPVVKKVVRLDVPVDKYPNYNFVGRLLGPRGNS 167
Query: 112 LKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLR 171
LKRVEA+T CRV+IRG+GS+KD KE+ LR +PG+EHLNEPLH+L+EAE P +++D RL
Sbjct: 168 LKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRLN 227
Query: 172 QAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREE--SPQLSGSLSPFTSNEMIKRA 229
QA I+E+LLKP+DES D YK+QQLRELA+LN + REE SP LS S+SPF S M KRA
Sbjct: 228 QAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREESPSPHLSPSVSPFNSTGM-KRA 286
Query: 230 KT 231
KT
Sbjct: 287 KT 288
>gb|AAV25646.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 291
Score = 247 bits (631), Expect = 2e-64
Identities = 134/241 (55%), Positives = 169/241 (69%), Gaps = 14/241 (5%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGST-KPSLMPSLDTTSSFTGWN 59
MQVLP C RLLNQEILRAS L N F + +RV GS + + P GW+
Sbjct: 53 MQVLPFCNRLLNQEILRASS---LPPNPNFVEPERVNHGSPLRLTGHPMNGQPMDLEGWS 109
Query: 60 SLSHE-----GLNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKR 114
+ E ++ W AP ++ S +VKK++R+D+P D +P +NFVGRLLGPRGNSLKR
Sbjct: 110 GMQTEMGVLQSPSMGWNVAPGVAGSPVVKKVVRIDVPVDKYPNYNFVGRLLGPRGNSLKR 169
Query: 115 VEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLRQAQ 174
VEATT CRV+IRG+GS+KD KE+ LR +PG+EHLN+PLH+L+EAE P ++VD+RL QA
Sbjct: 170 VEATTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNDPLHVLVEAEFPSDIVDVRLNQAV 229
Query: 175 EIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESP----QLSGSLSPFTSNEMIKRAK 230
I+E+LLKPVDES D YK+QQLRELA+LN + REESP S S+SPF S M KRAK
Sbjct: 230 AILEDLLKPVDESMDYYKKQQLRELAILNGTLREESPSPHLSPSPSVSPFNSTGM-KRAK 288
Query: 231 T 231
T
Sbjct: 289 T 289
>dbj|BAD73347.1| putative QUAKING isoform 5 [Oryza sativa (japonica cultivar-group)]
Length = 283
Score = 245 bits (625), Expect = 8e-64
Identities = 133/232 (57%), Positives = 170/232 (72%), Gaps = 16/232 (6%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSSFTG--- 57
+QVLP+C RLLNQEI+R S ++ + G ++DR+ S P+ M L +F G
Sbjct: 50 VQVLPICGRLLNQEIMRMSA---IVSHLGVREHDRLPIAS--PNQMHPLPQVPNFCGNGF 104
Query: 58 --WNSLSHEGLN-----VDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGN 110
W E + W+ A A S+IVKK++RL++P D +P FNF+GRLLGPRGN
Sbjct: 105 NPWTGTLPEKNGFPRGTMGWEGA-AHDPSYIVKKIVRLEVPTDAYPHFNFIGRLLGPRGN 163
Query: 111 SLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRL 170
SLKRVEA+TGCRVFIRGKGSIKD KEE L+GRPG+EHL++P HILIEAELP +V+D RL
Sbjct: 164 SLKRVEASTGCRVFIRGKGSIKDPIKEEQLKGRPGYEHLSDPTHILIEAELPADVIDTRL 223
Query: 171 RQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTS 222
QAQEI+E+LLKPV+ESQD KRQQLRELA+LNS++RE+SP +GS SPF++
Sbjct: 224 AQAQEILEDLLKPVEESQDFLKRQQLRELAVLNSTYREDSPHQNGSASPFSN 275
>ref|XP_467536.1| putative KH domain protein [Oryza sativa (japonica cultivar-group)]
gi|45735994|dbj|BAD13022.1| putative KH domain protein
[Oryza sativa (japonica cultivar-group)]
gi|45735990|dbj|BAD13019.1| putative KH domain protein
[Oryza sativa (japonica cultivar-group)]
Length = 341
Score = 238 bits (608), Expect = 8e-62
Identities = 131/233 (56%), Positives = 166/233 (71%), Gaps = 7/233 (3%)
Query: 3 VLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSL-MPSLDTTSSFTGWNSL 61
VLP RLLNQEILR S L++N + ++ GS + + S + GW S
Sbjct: 110 VLPNSVRLLNQEILRVST---LLENASLLNQSGLEHGSPLTTGGLYSNGAAADMNGWTSA 166
Query: 62 --SHEGLNVDWQRAPAISNSH-IVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEAT 118
S W+ S+S IVKK +++DIP D +PTFNFVGR+LGPRGNSLKRVEAT
Sbjct: 167 FQSEGSPAYSWRGGSQGSSSGLIVKKTMKVDIPVDKYPTFNFVGRILGPRGNSLKRVEAT 226
Query: 119 TGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIE 178
T CRV IRG+GSIKD +E+++RG+PG+EHLNEPLHIL+EAELPV ++D RL QA++I+E
Sbjct: 227 TDCRVLIRGRGSIKDPAREDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILE 286
Query: 179 ELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAKT 231
+LLKPVDESQD +K+QQLRELAMLN + REE Q SGS SPF ++ +KRAKT
Sbjct: 287 DLLKPVDESQDFFKKQQLRELAMLNGTLREEGMQRSGSASPFHNSLGMKRAKT 339
>ref|NP_915982.1| P0454H12.18 [Oryza sativa (japonica cultivar-group)]
Length = 291
Score = 238 bits (608), Expect = 8e-62
Identities = 133/240 (55%), Positives = 170/240 (70%), Gaps = 24/240 (10%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSSFTG--- 57
+QVLP+C RLLNQEI+R S ++ + G ++DR+ S P+ M L +F G
Sbjct: 50 VQVLPICGRLLNQEIMRMSA---IVSHLGVREHDRLPIAS--PNQMHPLPQVPNFCGNGF 104
Query: 58 --WNSLSHEGLN-----VDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGN 110
W E + W+ A A S+IVKK++RL++P D +P FNF+GRLLGPRGN
Sbjct: 105 NPWTGTLPEKNGFPRGTMGWEGA-AHDPSYIVKKIVRLEVPTDAYPHFNFIGRLLGPRGN 163
Query: 111 SLKRVEATTGCRVFIRGKGSIKD--------FDKEELLRGRPGFEHLNEPLHILIEAELP 162
SLKRVEA+TGCRVFIRGKGSIKD KEE L+GRPG+EHL++P HILIEAELP
Sbjct: 164 SLKRVEASTGCRVFIRGKGSIKDPIKASLFVTFKEEQLKGRPGYEHLSDPTHILIEAELP 223
Query: 163 VNVVDLRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTS 222
+V+D RL QAQEI+E+LLKPV+ESQD KRQQLRELA+LNS++RE+SP +GS SPF++
Sbjct: 224 ADVIDTRLAQAQEILEDLLKPVEESQDFLKRQQLRELAVLNSTYREDSPHQNGSASPFSN 283
>ref|XP_463561.1| P0408G07.16 [Oryza sativa (japonica cultivar-group)]
Length = 245
Score = 234 bits (596), Expect = 2e-60
Identities = 125/229 (54%), Positives = 160/229 (69%), Gaps = 17/229 (7%)
Query: 14 EILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSS---FTGWNSLSHEGLNV-- 68
+ILRAS L N F D +R++ GS P +P L GW+ + E + V
Sbjct: 21 QILRASS---LPPNHNFVDPERIEHGS--PLRLPGLPVNGQPMDLEGWSGMQTENMRVLQ 75
Query: 69 ----DWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVF 124
W PAI+ + +VKK++RLD+P D +P +NFVGRLLGPRGNSLKRVEA+T CRV+
Sbjct: 76 ASSMGWNGPPAITGTPVVKKVVRLDVPVDKYPNYNFVGRLLGPRGNSLKRVEASTQCRVY 135
Query: 125 IRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPV 184
IRG+GS+KD KE+ LR +PG+EHLNEPLH+L+EAE P +++D RL QA I+E+LLKP+
Sbjct: 136 IRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPI 195
Query: 185 DESQDIYKRQQLRELAMLNSSFREE--SPQLSGSLSPFTSNEMIKRAKT 231
DES D YK+QQLRELA+LN + REE SP LS S+SPF S M KRAKT
Sbjct: 196 DESMDYYKKQQLRELAILNGTLREESPSPHLSPSVSPFNSTGM-KRAKT 243
>gb|AAN41273.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|9758634|dbj|BAB09296.1| RNA-binding protein-like
[Arabidopsis thaliana] gi|15241136|ref|NP_200425.1| KH
domain-containing protein [Arabidopsis thaliana]
Length = 315
Score = 231 bits (589), Expect = 1e-59
Identities = 128/241 (53%), Positives = 166/241 (68%), Gaps = 18/241 (7%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPS----LDTTSSFT 56
+ VLP RLLNQEILR + L++N Q G PS + S + +
Sbjct: 80 LPVLPHAFRLLNQEILRVTT---LLENATVLS----QSGLDHPSPLASGGIFQNARADMN 132
Query: 57 GWNSLSHEGLNV------DWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGN 110
GW S +V +W +P S+ I K+ +R+DIP DN+P FNFVGRLLGPRGN
Sbjct: 133 GWASQFPSERSVPSSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGN 192
Query: 111 SLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRL 170
SLKRVEA+T CRV IRG+GSIKD KEE++RG+PG+EHLNEPLHIL+EAELP+ +VD RL
Sbjct: 193 SLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARL 252
Query: 171 RQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAK 230
QA+EI+++LL P++E+ D+YK+QQLRELA+LN + REE +SGS+SP+ S M KRAK
Sbjct: 253 MQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGM-KRAK 311
Query: 231 T 231
T
Sbjct: 312 T 312
>gb|AAL87326.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 260
Score = 229 bits (584), Expect = 5e-59
Identities = 127/241 (52%), Positives = 166/241 (68%), Gaps = 18/241 (7%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPS----LDTTSSFT 56
+ VLP RLLNQEILR + L++N Q G PS + S + +
Sbjct: 25 LPVLPHAFRLLNQEILRVTT---LLENATVLS----QSGLDHPSPLASGGIFQNARADMN 77
Query: 57 GWNSLSHEGLNV------DWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGN 110
GW S +V +W +P S+ I K+ +R+DIP DN+P FNFVGRLLGPRGN
Sbjct: 78 GWASQFPSERSVPSSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGN 137
Query: 111 SLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRL 170
SLKRVEA+T CRV IRG+GSIKD KEE++RG+PG+EHLNEPLHIL+EAELP+ +V+ RL
Sbjct: 138 SLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVNARL 197
Query: 171 RQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAK 230
QA+EI+++LL P++E+ D+YK+QQLRELA+LN + REE +SGS+SP+ S M KRAK
Sbjct: 198 MQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGM-KRAK 256
Query: 231 T 231
T
Sbjct: 257 T 257
>emb|CAB79503.1| putative protein [Arabidopsis thaliana] gi|2982458|emb|CAA18222.1|
putative protein [Arabidopsis thaliana]
gi|15236738|ref|NP_194378.1| KH domain-containing
protein [Arabidopsis thaliana] gi|7486790|pir||T05056
hypothetical protein M3E9.90 - Arabidopsis thaliana
Length = 555
Score = 228 bits (582), Expect = 8e-59
Identities = 124/239 (51%), Positives = 165/239 (68%), Gaps = 16/239 (6%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSL--DTTSSFTGW 58
+ VLP RL+NQEILR + L++N + +F P + ++ + GW
Sbjct: 323 LPVLPHVCRLMNQEILRVTT---LLENA----LSQSRFDHPSPLASGGIFQNSRADMNGW 375
Query: 59 NSLSHEGLNV------DWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSL 112
S +V +W +P S+ IVK+ +R+DIP D +P +NFVGRLLGPRGNSL
Sbjct: 376 ASQFPSERSVSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSL 435
Query: 113 KRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLRQ 172
KRVEA+T CRV IRG+GSIKD KE+++RG+PG+EHLNEPLHIL+EAELP+ +VD RL Q
Sbjct: 436 KRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQ 495
Query: 173 AQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAKT 231
A+EI+++LL PV+E+ D YK+QQLRELA+LN S REE +SGS+SP+ S M KRAKT
Sbjct: 496 AREILDDLLTPVEETHDFYKKQQLRELALLNGSLREEGSPMSGSISPYNSLGM-KRAKT 553
>gb|AAM14070.1| unknown protein [Arabidopsis thaliana]
Length = 308
Score = 228 bits (582), Expect = 8e-59
Identities = 124/239 (51%), Positives = 165/239 (68%), Gaps = 16/239 (6%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSL--DTTSSFTGW 58
+ VLP RL+NQEILR + L++N + +F P + ++ + GW
Sbjct: 76 LPVLPHVCRLMNQEILRVTT---LLENA----LSQSRFDHPSPLASGGIFQNSRADMNGW 128
Query: 59 NSLSHEGLNV------DWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSL 112
S +V +W +P S+ IVK+ +R+DIP D +P +NFVGRLLGPRGNSL
Sbjct: 129 ASQFPSERSVSSSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSL 188
Query: 113 KRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLRQ 172
KRVEA+T CRV IRG+GSIKD KE+++RG+PG+EHLNEPLHIL+EAELP+ +VD RL Q
Sbjct: 189 KRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQ 248
Query: 173 AQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQLSGSLSPFTSNEMIKRAKT 231
A+EI+++LL PV+E+ D YK+QQLRELA+LN S REE +SGS+SP+ S M KRAKT
Sbjct: 249 AREILDDLLTPVEETHDFYKKQQLRELALLNGSLREEGSPMSGSISPYNSLGM-KRAKT 306
>dbj|BAC43277.1| putative elongation factor [Arabidopsis thaliana]
gi|22329449|ref|NP_172437.2| KH domain-containing
quaking protein, putative [Arabidopsis thaliana]
gi|51971727|dbj|BAD44528.1| putative elongation factor
[Arabidopsis thaliana] gi|51971995|dbj|BAD44662.1|
putative elongation factor [Arabidopsis thaliana]
gi|51970676|dbj|BAD44030.1| putative elongation factor
[Arabidopsis thaliana] gi|51969734|dbj|BAD43559.1|
putative elongation factor [Arabidopsis thaliana]
gi|51968882|dbj|BAD43133.1| putative elongation factor
[Arabidopsis thaliana]
Length = 298
Score = 224 bits (571), Expect = 1e-57
Identities = 126/251 (50%), Positives = 157/251 (62%), Gaps = 32/251 (12%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSSFTGWNS 60
+QV+P C RLLN EI R S F D DR + GS SL + GW+
Sbjct: 60 LQVMPNCCRLLNHEIRRVSS---------FPDLDRYEHGSPFRSLGQPTNGKLDLEGWSM 110
Query: 61 LSHEG-------------LNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGP 107
+ E V W P + N IVKK++RLD+P D +P++NFVGR+LGP
Sbjct: 111 MQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGP 170
Query: 108 RGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVD 167
RGNSLKRVE T CRVFIRG+GS+KD KEE L+G+PG+EHL EPLH+LIEAELP ++++
Sbjct: 171 RGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIIN 230
Query: 168 LRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQ------LSGSLSPFT 221
RL A +E LLKP+DES D YKR+QL+ELA LN + REESP LS S+SPF
Sbjct: 231 SRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFN 290
Query: 222 SNEMIKRAKTD 232
S KRAKT+
Sbjct: 291 S----KRAKTE 297
>gb|AAL84995.1| At1g09660/F21M12_5 [Arabidopsis thaliana]
gi|16930473|gb|AAL31922.1| At1g09660/F21M12_5
[Arabidopsis thaliana]
Length = 298
Score = 224 bits (571), Expect = 1e-57
Identities = 126/251 (50%), Positives = 157/251 (62%), Gaps = 32/251 (12%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSSFTGWNS 60
+QV+P C RLLN EI R S F D DR + GS SL + GW+
Sbjct: 60 LQVMPNCCRLLNHEIRRVSS---------FPDLDRYEHGSPFRSLGQPTNGKLDLEGWSM 110
Query: 61 LSHEG-------------LNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGP 107
+ E V W P + N IVKK++RLD+P D +P++NFVGR+LGP
Sbjct: 111 MQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGP 170
Query: 108 RGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVD 167
RGNSLKRVE T CRVFIRG+GS+KD KEE L+G+PG+EHL EPLH+LIEAELP ++++
Sbjct: 171 RGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIIN 230
Query: 168 LRLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSSFREESPQ------LSGSLSPFT 221
RL A +E LLKP+DES D YKR+QL+ELA LN + REESP LS S+SPF
Sbjct: 231 SRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFN 290
Query: 222 SNEMIKRAKTD 232
S KRAKT+
Sbjct: 291 S----KRAKTE 297
>pir||D86230 hypothetical protein [imported] - Arabidopsis thaliana
gi|2160160|gb|AAB60723.1| F21M12.5 gene product
[Arabidopsis thaliana]
Length = 163
Score = 200 bits (509), Expect = 2e-50
Identities = 101/165 (61%), Positives = 126/165 (76%), Gaps = 10/165 (6%)
Query: 74 PAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKD 133
P + N IVKK++RLD+P D +P++NFVGR+LGPRGNSLKRVE T CRVFIRG+GS+KD
Sbjct: 2 PGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKD 61
Query: 134 FDKEELLRGRPGFEHLNEPLHILIEAELPVNVVDLRLRQAQEIIEELLKPVDESQDIYKR 193
KEE L+G+PG+EHL EPLH+LIEAELP ++++ RL A +E LLKP+DES D YKR
Sbjct: 62 TVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKR 121
Query: 194 QQLRELAMLNSSFREESPQ------LSGSLSPFTSNEMIKRAKTD 232
+QL+ELA LN + REESP LS S+SPF S KRAKT+
Sbjct: 122 EQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS----KRAKTE 162
>ref|NP_973800.1| KH domain-containing quaking protein, putative [Arabidopsis
thaliana]
Length = 264
Score = 177 bits (448), Expect = 3e-43
Identities = 96/200 (48%), Positives = 122/200 (61%), Gaps = 22/200 (11%)
Query: 1 MQVLPLCTRLLNQEILRASGKSGLMQNQGFSDYDRVQFGSTKPSLMPSLDTTSSFTGWNS 60
+QV+P C RLLN EI R S F D DR + GS SL + GW+
Sbjct: 60 LQVMPNCCRLLNHEIRRVSS---------FPDLDRYEHGSPFRSLGQPTNGKLDLEGWSM 110
Query: 61 LSHEG-------------LNVDWQRAPAISNSHIVKKMLRLDIPHDNHPTFNFVGRLLGP 107
+ E V W P + N IVKK++RLD+P D +P++NFVGR+LGP
Sbjct: 111 MQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGP 170
Query: 108 RGNSLKRVEATTGCRVFIRGKGSIKDFDKEELLRGRPGFEHLNEPLHILIEAELPVNVVD 167
RGNSLKRVE T CRVFIRG+GS+KD KEE L+G+PG+EHL EPLH+LIEAELP ++++
Sbjct: 171 RGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIIN 230
Query: 168 LRLRQAQEIIEELLKPVDES 187
RL A +E LLKP+ S
Sbjct: 231 SRLEHAVHFLESLLKPMVHS 250
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,993,638
Number of Sequences: 2540612
Number of extensions: 17035851
Number of successful extensions: 39510
Number of sequences better than 10.0: 337
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 39032
Number of HSP's gapped (non-prelim): 355
length of query: 232
length of database: 863,360,394
effective HSP length: 124
effective length of query: 108
effective length of database: 548,324,506
effective search space: 59219046648
effective search space used: 59219046648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
Medicago: description of AC149600.13