BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149600.1 - phase: 0
(494 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar... 623 e-177
gb|AAL68641.1| polyprotein [Oryza sativa (japonica cultivar-group)] 620 e-176
gb|AAP54332.1| putative copia-like polyprotein [Oryza sativa (ja... 620 e-176
ref|XP_470422.1| putative polyprotein [Oryza sativa (japonica cu... 609 e-173
ref|XP_470025.1| putative polyprotein [Oryza sativa (japonica cu... 607 e-172
ref|NP_918613.1| polyprotein [Oryza sativa (japonica cultivar-gr... 601 e-170
gb|AAT40550.1| putative receptor kinase [Solanum demissum] 560 e-158
pir||F86470 probable retroelement polyprotein [imported] - Arabi... 520 e-146
emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa (japonica cultivar... 511 e-143
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 503 e-141
emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis th... 503 e-141
gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|2... 499 e-140
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 490 e-137
pir||E96608 probable retroelement polyprotein F25P12.89 [importe... 484 e-135
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 477 e-133
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 475 e-132
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 473 e-132
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 471 e-131
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 470 e-131
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides] 466 e-130
>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar-group)]
gi|50925209|ref|XP_472906.1| OSJNBb0011N17.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1262
Score = 623 bits (1607), Expect = e-177
Identities = 303/497 (60%), Positives = 377/497 (74%), Gaps = 6/497 (1%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M++E+ L+KN TWDLV+ P GKK V C+WV+ +K DG ++RYKARLVAKGY+Q+YG+
Sbjct: 769 MLDELEALEKNKTWDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGYSQTYGI 828
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGM--VYS 118
DY ETFAPVAK++TVR ++S A N DWPL Q DVKNAFLHG++ E++YM+ PPG + +
Sbjct: 829 DYDETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQT 888
Query: 119 NGLKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYV 178
G KV +LKK+LYGLKQSPRAWF RF ++M GYK N DHT+F IT L +YV
Sbjct: 889 KG-KVLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQCNGDHTVFYHHSGDHITILAVYV 947
Query: 179 DDMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLS 238
DDMI+TGN+ EI+ L++ L+ +FE+K LG LKYF+GIE+ARS GI L QRKY LDLLS
Sbjct: 948 DDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYALDLLS 1007
Query: 239 ETGLLASKSAETPIEQNHKLFHCLNS-NITDKGRYQSLVGKLIYLSHTRPDITYAVNVVS 297
+TG+L + A TP++QNHKL C S N +K RYQ LVG+LIYL HTRPDITYAV++VS
Sbjct: 1008 DTGMLGCRPASTPVDQNHKL--CAESGNPVNKERYQRLVGRLIYLCHTRPDITYAVSMVS 1065
Query: 298 QFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGY 357
++MHDPR HMD V RILRYLK +PGKG+ F NGHL VEGY DADWA DDRRSTSGY
Sbjct: 1066 RYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEVEGYCDADWASCPDDRRSTSGY 1125
Query: 358 FTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYC 417
FVGGNLV+WRSKKQPVV+RS+AE E+R M++ + ELLW++++LS+L M L+C
Sbjct: 1126 CVFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSVSLSELLWLRNLLSELMLPVDTPMKLWC 1185
Query: 418 DNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKV 477
DN SAI IA+NPVQHDRTKHVE+DR FIKEKLD G + FV S Q+AD TKG+ K
Sbjct: 1186 DNKSAISIANNPVQHDRTKHVELDRFFIKEKLDEGVLELEFVMSGGQVADCFTKGLGVKE 1245
Query: 478 FNESLLKLGMCDIHAPT 494
N S K+GM DI+ P+
Sbjct: 1246 CNSSCDKMGMIDIYHPS 1262
>gb|AAL68641.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1472
Score = 620 bits (1600), Expect = e-176
Identities = 302/497 (60%), Positives = 376/497 (74%), Gaps = 6/497 (1%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M++E+ L+KN TWDLV+ P GKK V C+WV+ +K DG ++RYKARLVAKGY+Q+YG+
Sbjct: 979 MLDELEALEKNKTWDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGYSQTYGI 1038
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGM--VYS 118
DY ETFAPVAK++TVR ++S A N DWPL Q DVKNAFLHG++ E++YM+ PPG + +
Sbjct: 1039 DYDETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQT 1098
Query: 119 NGLKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYV 178
G KV +LKK+LYGLKQSPRAWF RF ++M GYK N DHT+F IT L +YV
Sbjct: 1099 KG-KVLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQCNGDHTVFYHHSGDHITILAVYV 1157
Query: 179 DDMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLS 238
DDMI+TGN+ EI+ L++ L+ +FE+K LG LKYF+GIE+ARS GI L QRKY LDLLS
Sbjct: 1158 DDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYALDLLS 1217
Query: 239 ETGLLASKSAETPIEQNHKLFHCLNS-NITDKGRYQSLVGKLIYLSHTRPDITYAVNVVS 297
+TG+L + A TP++QNHKL C S N +K RYQ LVG+LIYL HTRPDITYAV++VS
Sbjct: 1218 DTGMLGCRPASTPVDQNHKL--CAESGNPVNKERYQRLVGRLIYLCHTRPDITYAVSMVS 1275
Query: 298 QFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGY 357
++MHDPR HMD V RILRYLK +PGKG+ F NGHL VEGY DA WA DDRRSTSGY
Sbjct: 1276 RYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEVEGYCDAHWASCPDDRRSTSGY 1335
Query: 358 FTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYC 417
FVGGNLV+WRSKKQPVV+RS+AE E+R M++ + ELLW++++LS+L M L+C
Sbjct: 1336 CVFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSVSLSELLWLRNLLSELMLPVDTPMKLWC 1395
Query: 418 DNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKV 477
DN SAI IA+NPVQHDRTKHVE+DR FIKEKLD G + FV S Q+AD TKG+ K
Sbjct: 1396 DNKSAISIANNPVQHDRTKHVELDRFFIKEKLDEGVLELEFVMSGGQVADCFTKGLGVKE 1455
Query: 478 FNESLLKLGMCDIHAPT 494
N S K+GM DI+ P+
Sbjct: 1456 CNSSCDKMGMIDIYHPS 1472
>gb|AAP54332.1| putative copia-like polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37535486|ref|NP_922045.1| putative
copia-like polyprotein [Oryza sativa (japonica
cultivar-group)] gi|22094347|gb|AAM91874.1| putative
copia-like polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 894
Score = 620 bits (1599), Expect = e-176
Identities = 301/496 (60%), Positives = 379/496 (75%), Gaps = 4/496 (0%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M+EE+ L+KN TWDLV P+GKK V C+WV+T+K D ++RYKARLVAKGY+Q+YG+
Sbjct: 401 MLEELEALEKNKTWDLVPFPKGKKVVNCKWVYTVKQNPDENVERYKARLVAKGYSQTYGI 460
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAK++TVR L+S AAN DWPL Q DVKNAFLHG++ E++YM+ PPG S
Sbjct: 461 DYDETFAPVAKMSTVRTLISCAANFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATSQT 520
Query: 121 L-KVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVD 179
KV +LKK+LYGLKQSPRAWF RF ++M GYK N DHT+F + G T L++YVD
Sbjct: 521 EGKVLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHTVFYRHNRGLKTILVVYVD 580
Query: 180 DMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSE 239
DMI+TG++ EIS L++ L+ +FE+K LG LKYF+GIE+ARS GI L QRKY LDLLS+
Sbjct: 581 DMIITGDDCLEISRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLSD 640
Query: 240 TGLLASKSAETPIEQNHKLFHCLNS-NITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQ 298
TG+L + A T IEQNHKL C S + +K RYQ LVG+LIYL HTRPDITYAV+VVS+
Sbjct: 641 TGMLGCRPASTLIEQNHKL--CAESGDPVNKERYQRLVGRLIYLCHTRPDITYAVSVVSR 698
Query: 299 FMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYF 358
+MHDPR HMDVV RILRYLK++PGKGI F NGHL +EGY DADW DDRRSTSGY
Sbjct: 699 YMHDPRSGHMDVVYRILRYLKASPGKGIWFKKNGHLDMEGYCDADWGSCLDDRRSTSGYC 758
Query: 359 TFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCD 418
F+GGNLV+WRSKK+ VV+RS+AE E+R M++ + ELLW+K++L++L +M L+CD
Sbjct: 759 VFIGGNLVSWRSKKESVVSRSTAEAEYRSMSMSLSELLWLKNLLAELKLSTSTSMKLWCD 818
Query: 419 NTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVF 478
N SAI IA+NPVQHDRTKHVEIDR FIKE++D GT+ FV S +Q+ D LTK + ++
Sbjct: 819 NKSAINIANNPVQHDRTKHVEIDRFFIKERMDEGTLNLGFVNSGEQVVDSLTKALGAREC 878
Query: 479 NESLLKLGMCDIHAPT 494
S K+GM DI+ P+
Sbjct: 879 TSSCSKMGMIDIYRPS 894
>ref|XP_470422.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27573360|gb|AAO20078.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 609 bits (1571), Expect = e-173
Identities = 300/496 (60%), Positives = 371/496 (74%), Gaps = 4/496 (0%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M++E+ L+KN TWDLV P+GKK V C+WV+T+K DG ++RYKARLVAKGY+Q+YG+
Sbjct: 806 MLDELEALEKNKTWDLVPFPKGKKIVNCKWVYTVKQNPDGKVERYKARLVAKGYSQTYGI 865
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAK++TVR L+S AAN DWPL Q DVKNAFLH ++ E++YMD PPG S
Sbjct: 866 DYDETFAPVAKMSTVRTLISCAANFDWPLHQLDVKNAFLHRDLQEEVYMDVPPGFATSQT 925
Query: 121 L-KVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVD 179
KV +LKK+LYGLKQSPRAWF RF ++M YK N DHT+F IT L +YVD
Sbjct: 926 KGKVLRLKKSLYGLKQSPRAWFDRFRRAMCAMDYKQCNGDHTVFYHHSGDHITILAVYVD 985
Query: 180 DMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSE 239
DMI+TGN+ EI+ L++ L+ +FE+K LG L+YF+GIE+ARS GI + QRKY LDLLSE
Sbjct: 986 DMIITGNDCLEITRLKRNLSKEFEVKDLGQLRYFLGIEIARSPRGIVISQRKYVLDLLSE 1045
Query: 240 TGLLASKSAETPIEQNHKLFHCLNS-NITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQ 298
TG+L TPI+QNHKL C S + ++ RYQ LVG+LIYL HTRPDITYAV++VS+
Sbjct: 1046 TGMLGCCPVSTPIDQNHKL--CAESGDPVNRERYQRLVGRLIYLCHTRPDITYAVSMVSR 1103
Query: 299 FMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYF 358
+MHDPR HM+ V RILRYLK +PGKG+ F NGHL++EGY DADWA DDRRSTSGY
Sbjct: 1104 YMHDPRSSHMEAVYRILRYLKGSPGKGLWFKKNGHLKIEGYCDADWASCLDDRRSTSGYC 1163
Query: 359 TFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCD 418
+VGGNLV+WRSKKQ VV+RS+AE E+R MA + ELLW++++L +L M L CD
Sbjct: 1164 VYVGGNLVSWRSKKQSVVSRSTAEAEYRAMAASLSELLWLRNLLVELKILGNTPMKLLCD 1223
Query: 419 NTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVF 478
N SAI IA+NPVQHDRTKHVEIDR FIKEKLD G + FV S Q+AD LTKG+ K
Sbjct: 1224 NKSAINIANNPVQHDRTKHVEIDRFFIKEKLDEGVLELGFVTSGGQVADCLTKGLGVKEC 1283
Query: 479 NESLLKLGMCDIHAPT 494
N S K+GM DI+ P+
Sbjct: 1284 NCSCDKMGMIDIYHPS 1299
>ref|XP_470025.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30103001|gb|AAP21414.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1393
Score = 607 bits (1564), Expect = e-172
Identities = 296/496 (59%), Positives = 373/496 (74%), Gaps = 4/496 (0%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M EE+ L KN TW+LV LP K+ VGC+WVFT+K +G +DRYKARLVAKGY+Q+YG+
Sbjct: 900 MKEELNALVKNKTWELVKLPPEKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGYSQTYGI 959
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAK+ TVR L+S A N WPL Q DVKNAFLHG++ E++YM+ PPG S
Sbjct: 960 DYDETFAPVAKMGTVRALVSCAVNFGWPLHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQT 1019
Query: 121 L-KVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVD 179
+ KVCKLKK+LYGLKQSPRAWF RF ++ GY N DHT+F K IT L +YVD
Sbjct: 1020 VGKVCKLKKSLYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRGTHITILAVYVD 1079
Query: 180 DMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSE 239
D+++TG++ +EI L++ L FE+K LG L+YF+GIE+ARS GI L QRKY LDLL++
Sbjct: 1080 DIVITGDDVEEIRCLKERLGKAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTD 1139
Query: 240 TGLLASKSAETPIEQNHKLFHCLNS-NITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQ 298
TG+L +++ TPI++NH+L C S + DK YQ LVG+LIYL HTRPDI+YAV+VVS+
Sbjct: 1140 TGMLGCRASTTPIDRNHQL--CAQSGDPVDKEAYQRLVGRLIYLCHTRPDISYAVSVVSR 1197
Query: 299 FMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYF 358
+MHDPR H+DVV +ILRYLK TPGKG+ F NGHL VEGY DADWA S DDRRSTSGY
Sbjct: 1198 YMHDPRTGHLDVVHKILRYLKGTPGKGLWFRKNGHLNVEGYCDADWASSMDDRRSTSGYC 1257
Query: 359 TFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCD 418
FVGGNLV+WRSKKQ VVARS+AE E+R MAL + E+LW++S+L++L + + L+CD
Sbjct: 1258 VFVGGNLVSWRSKKQAVVARSTAEAEYRAMALSLSEMLWMRSLLTELRVLRSDTVMLHCD 1317
Query: 419 NTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVF 478
N SAI IA+NPVQHDRTKHVEIDR FIKEK+D+G + +++S +QLAD LTKG+
Sbjct: 1318 NKSAISIANNPVQHDRTKHVEIDRFFIKEKIDSGVLRLEYIKSCEQLADCLTKGLGPSEI 1377
Query: 479 NESLLKLGMCDIHAPT 494
K+GM DI P+
Sbjct: 1378 QSICNKMGMIDIFCPS 1393
>ref|NP_918613.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1554
Score = 601 bits (1549), Expect = e-170
Identities = 294/492 (59%), Positives = 369/492 (74%), Gaps = 4/492 (0%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M EE+ L KN TW+LV LP K+ VGC+WVFT+K +G +D YKARLVAKGY+Q+YG+
Sbjct: 1061 MKEELNALVKNKTWELVKLPPEKRAVGCKWVFTVKQTPEGKVDMYKARLVAKGYSQTYGI 1120
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAK+ TVR L+S A N WPL Q DVKNAFLHG++ E++YM+ PPG S
Sbjct: 1121 DYDETFAPVAKMGTVRALVSCAVNFGWPLHQLDVKNAFLHGDLHEEVYMEIPPGFGNSQT 1180
Query: 121 L-KVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVD 179
+ KVCKLKK+LYGLKQSPRAWF RF ++ GY N DHT+F K IT L +YVD
Sbjct: 1181 VGKVCKLKKSLYGLKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRGTHITILAVYVD 1240
Query: 180 DMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSE 239
D+++TG++ +EI L++ L FE+K LG L+YF+GIE+ARS GI L QRKY LDLL++
Sbjct: 1241 DIVITGDDVEEIRCLKERLGKAFEVKDLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTD 1300
Query: 240 TGLLASKSAETPIEQNHKLFHCLNS-NITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQ 298
TG+L +++ TPI++NH+L C S + DK YQ LVG+LIYL HTRPDI+YAV+VVS+
Sbjct: 1301 TGMLGCRASTTPIDRNHQL--CAQSGDPVDKEAYQRLVGRLIYLCHTRPDISYAVSVVSR 1358
Query: 299 FMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYF 358
+MHDPR H+DVV +ILRYLK TPGKG+ F NGHL VEGY DADWA S DDRRSTSGY
Sbjct: 1359 YMHDPRTGHLDVVHKILRYLKGTPGKGLWFRKNGHLNVEGYCDADWASSMDDRRSTSGYC 1418
Query: 359 TFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCD 418
FVGGNLV+WRSKKQ VVARS+AE E+R MAL E+LW++S+L++L + + L+CD
Sbjct: 1419 VFVGGNLVSWRSKKQAVVARSTAEAEYRAMALSFSEMLWMRSLLTELRVLRSDTVMLHCD 1478
Query: 419 NTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVF 478
N SAI IA+NPVQHDRTKHVEIDR FIKEK+D+G + +++S +QLAD LTKG+
Sbjct: 1479 NKSAISIANNPVQHDRTKHVEIDRFFIKEKIDSGVLRLEYIKSCEQLADCLTKGLGPSEI 1538
Query: 479 NESLLKLGMCDI 490
K+GM DI
Sbjct: 1539 QSVCNKMGMIDI 1550
>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
Length = 1358
Score = 560 bits (1442), Expect = e-158
Identities = 269/496 (54%), Positives = 362/496 (72%), Gaps = 3/496 (0%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
MV+EM+ L K+ TW+LV+LP GK TVGCRWV+ +K DG +DR KARLVAKGYTQ +G+
Sbjct: 862 MVDEMSALHKSGTWELVSLPAGKSTVGCRWVYAVKIGPDGQVDRLKARLVAKGYTQIFGL 921
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYS-- 118
DY +TFAPVAK+ +VR+ LS+AA + WPL Q D+KNAFLHG++ E++YM+ PPG V
Sbjct: 922 DYSDTFAPVAKIASVRLFLSMAAVRHWPLHQLDIKNAFLHGDLEEEVYMEQPPGFVAQGE 981
Query: 119 NGLKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGE-GKITALIIY 177
+ VC+L+++LYGLKQSPRAWFG+F+ ++ FG S +DH++F + + L++Y
Sbjct: 982 SSSLVCRLRRSLYGLKQSPRAWFGKFSTVIQEFGMTRSGADHSVFYRHSAPSRCIYLVVY 1041
Query: 178 VDDMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLL 237
VDD+++TGN+QD I+ L+++L F+ K LG LKYF+GIEVA+S+ GI + QRKY LD+L
Sbjct: 1042 VDDIVITGNDQDGITDLKQHLFKHFQTKDLGRLKYFLGIEVAQSRSGIVISQRKYALDIL 1101
Query: 238 SETGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVS 297
ETG++ + +TP++ N KL +++ RY+ LVGKL YL+ TRPDI++ V+VVS
Sbjct: 1102 EETGMMGCRPVDTPMDPNVKLLPGQGEPLSNPERYRRLVGKLNYLTVTRPDISFPVSVVS 1161
Query: 298 QFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGY 357
QFM P H + V RILRY+KS PGKG+LF + GH + GYTDADWAGS DRRSTSGY
Sbjct: 1162 QFMTSPCDSHWEAVVRILRYIKSAPGKGLLFEDQGHEHIIGYTDADWAGSPSDRRSTSGY 1221
Query: 358 FTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYC 417
VGGNLV+W+SKKQ VVARSSAE E+R MA CEL+W+K +L +L F + M L C
Sbjct: 1222 CVLVGGNLVSWKSKKQNVVARSSAESEYRAMATATCELVWIKQLLGELKFGKVDKMELVC 1281
Query: 418 DNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKV 477
DN +A+ IA NPV H+RTKH+EID HF++EK+ +G IV FV+S QLAD+ TK ++
Sbjct: 1282 DNQAALHIASNPVFHERTKHIEIDCHFVREKILSGDIVTKFVKSNDQLADIFTKSLTCPR 1341
Query: 478 FNESLLKLGMCDIHAP 493
N KLG D++AP
Sbjct: 1342 INYICNKLGTYDLYAP 1357
>pir||F86470 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989049|gb|AAG10812.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1404
Score = 520 bits (1340), Expect = e-146
Identities = 262/494 (53%), Positives = 350/494 (70%), Gaps = 4/494 (0%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
+ +E+ +K+N+TWD LP+GKKTV RWVFTIK+K++G I+RYK RLVA+G+TQ+YG
Sbjct: 908 IADEINAMKRNHTWDEDDLPKGKKTVSSRWVFTIKYKSNGDIERYKTRLVARGFTQTYGS 967
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAKL+TVR++L+LA N W L Q DVKNAFL GE+ +D+YM PPG+ +
Sbjct: 968 DYMETFAPVAKLHTVRVVLALATNLSWGLWQMDVKNAFLQGELEDDVYMTPPPGLEDTIP 1027
Query: 121 L-KVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVD 179
KV +L+KA+YGLKQSPRAW+ + ++++K G+K S SDHTLF + I ++IYVD
Sbjct: 1028 CDKVLRLRKAIYGLKQSPRAWYHKLSRTLKDHGFKKSESDHTLFTLQSPQGIVVVLIYVD 1087
Query: 180 DMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSE 239
D+I+TG+N+D I S + +L S F++K LG LKYF+GIEV RS G+FL QRKYTLDLL+E
Sbjct: 1088 DLIITGDNKDGIDSTKTFLKSCFDIKDLGELKYFLGIEVCRSNAGLFLSQRKYTLDLLNE 1147
Query: 240 TGLLASKSAETPIEQNHKLFHC---LNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVV 296
TG + +K A TP+E +K+ + D Y+ LVGKLIYL++TRPDI +AVN V
Sbjct: 1148 TGFMDAKPARTPLEDGYKVNRKGEKEDEKFGDAPLYRKLVGKLIYLTNTRPDICFAVNQV 1207
Query: 297 SQFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSG 356
SQ M P H ++VERILRYLK + G+GI N + GY DAD+AG DRRS +G
Sbjct: 1208 SQHMKVPMVYHWNMVERILRYLKGSSGQGIWMGKNSSTEIVGYCDADYAGDRGDRRSKTG 1267
Query: 357 YFTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLY 416
Y TF+GGNL TW++KKQ VV+ SSAE E+R M EL W+K++L DLG E ++++
Sbjct: 1268 YCTFIGGNLATWKTKKQKVVSCSSAESEYRAMRKLTNELTWLKALLKDLGIEQHMPITMH 1327
Query: 417 CDNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSK 476
CDN +AI IA N V H+RTKH+E+D H ++EK+ G + + RSE QLAD+ TK S K
Sbjct: 1328 CDNKAAIYIASNSVFHERTKHIEVDCHKVREKIIEGVTLPCYTRSEDQLADIFTKAASLK 1387
Query: 477 VFNESLLKLGMCDI 490
V N KLG+ D+
Sbjct: 1388 VCNFIHGKLGLVDL 1401
>emb|CAE05707.2| OSJNBb0065J09.3 [Oryza sativa (japonica cultivar-group)]
Length = 1015
Score = 511 bits (1315), Expect = e-143
Identities = 248/396 (62%), Positives = 304/396 (76%), Gaps = 2/396 (0%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M+EEM+ L+KN TW+LV P GKK V C+WV +K G ++RYKARLVAKGY+Q+YG+
Sbjct: 504 MMEEMSALEKNKTWELVPFPTGKKVVSCKWVNAVKQDPFGKVERYKARLVAKGYSQTYGI 563
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAK++TVR L+S AAN DWPL Q DVKNAFLHG++ E++YM+ PPG S
Sbjct: 564 DYDETFAPVAKMSTVRTLISCAANFDWPLYQLDVKNAFLHGDLQEEVYMEIPPGFSTSQT 623
Query: 121 L-KVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVD 179
KV +LKK+LYGLKQSPRAWF RF ++M GYK N DHTLF + KI L +YVD
Sbjct: 624 KGKVLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQCNGDHTLFYRHRGKKIAILAVYVD 683
Query: 180 DMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSE 239
D+I+TG++ EI+ L++ ++ +FE+K LG LKYF+GIE+ARS GI L QRKY LDLL +
Sbjct: 684 DIIITGDDTQEIAQLKENISKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLCD 743
Query: 240 TGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQF 299
TG+L + A TPIEQNHKL L + +K RYQ LVG+LIYL HTRPDITYAV+VVS++
Sbjct: 744 TGMLGCRPASTPIEQNHKLCAELGDPV-NKERYQRLVGRLIYLCHTRPDITYAVSVVSRY 802
Query: 300 MHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFT 359
MHDPR HMD V RILRYLK +PGKG+ F NGHL VEGY DADWA S DDRRSTSGY
Sbjct: 803 MHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLGVEGYCDADWASSLDDRRSTSGYCV 862
Query: 360 FVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCEL 395
FVGGNLV+WRSKKQPVV+RS+AE E+R M+ +C +
Sbjct: 863 FVGGNLVSWRSKKQPVVSRSTAEAEYRAMSGCICRI 898
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 503 bits (1295), Expect = e-141
Identities = 240/494 (48%), Positives = 347/494 (69%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M E+ +L+ N T+ +V LP GK+ +G +WV+ IK+++DG I+RYKARLV G Q GV
Sbjct: 616 MSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGV 675
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAK++TVR+ L +AA +DW + Q DV NAFLHG++ E++YM P G +
Sbjct: 676 DYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDP 735
Query: 121 LKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVDD 180
KVC+L K+LYGLKQ+PR WF + + ++K +G+ S SD++LF +G +++YVDD
Sbjct: 736 SKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDD 795
Query: 181 MIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSET 240
+I++G+ D ++ + YL S F MK LG LKYF+GIEV+R+ G +L QRKY LD++SE
Sbjct: 796 LIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEM 855
Query: 241 GLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFM 300
GLL ++ + P+EQNHKL + ++D RY+ LVG+LIYL+ TRP+++Y+V+ ++QFM
Sbjct: 856 GLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFM 915
Query: 301 HDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTF 360
+PR+ H + R++RYLKS PG+GIL S+ L++ G+ D+D+A RRS +GYF
Sbjct: 916 QNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQ 975
Query: 361 VGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNT 420
+G ++W++KKQP V+RSSAE E+R MA EL+W+K VL DLG +AM ++ D+
Sbjct: 976 LGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSK 1035
Query: 421 SAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNE 480
SAI ++ NPVQH+RTKHVE+D HFI++ + G I FV S +QLAD+LTK + K
Sbjct: 1036 SAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRY 1095
Query: 481 SLLKLGMCDIHAPT 494
L KLG+ D+HAPT
Sbjct: 1096 FLRKLGILDVHAPT 1109
>emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|2961349|emb|CAA18107.1| LTR retrotransposon like
protein [Arabidopsis thaliana] gi|11358464|pir||T49111
hypothetical retrovirus-related pol polyprotein AT4g22040
- Arabidopsis thaliana
Length = 1109
Score = 503 bits (1294), Expect = e-141
Identities = 239/494 (48%), Positives = 347/494 (69%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M E+ +L+ N T+ +V LP GK+ +G +WV+ IK+++DG I+RYKARLV G Q GV
Sbjct: 616 MSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGV 675
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAK++TVR+ L +AA +DW + Q DV NAFLHG++ E++YM P G +
Sbjct: 676 DYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDP 735
Query: 121 LKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVDD 180
KVC+L K+LYGLKQ+PR WF + + ++K +G+ S SD++LF +G +++YVDD
Sbjct: 736 SKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDD 795
Query: 181 MIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSET 240
+I++G+ D ++ + YL S F MK LG LKYF+GIEV+R+ G +L QRKY LD++SE
Sbjct: 796 LIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEM 855
Query: 241 GLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFM 300
GLL ++ + P+EQNHKL + ++D RY+ LVG+LIYL+ TRP+++Y+V+ ++QFM
Sbjct: 856 GLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFM 915
Query: 301 HDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTF 360
+PR+ H + R++RYLKS PG+GIL S+ L++ G+ D+D+A RRS +GYF
Sbjct: 916 QNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQ 975
Query: 361 VGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNT 420
+G ++W++KKQP ++RSSAE E+R MA EL+W+K VL DLG +AM ++ D+
Sbjct: 976 LGDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSK 1035
Query: 421 SAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNE 480
SAI ++ NPVQH+RTKHVE+D HFI++ + G I FV S +QLAD+LTK + K
Sbjct: 1036 SAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRY 1095
Query: 481 SLLKLGMCDIHAPT 494
L KLG+ D+HAPT
Sbjct: 1096 FLRKLGILDVHAPT 1109
>gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|25301686|pir||F96610
probable polyprotein T8L23.26 [imported] - Arabidopsis
thaliana
Length = 1468
Score = 499 bits (1286), Expect = e-140
Identities = 239/493 (48%), Positives = 345/493 (69%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M E+ +L+ N T+ +V LP GK+ +G +WV+ IK+++DG I+RYKARLV G Q GV
Sbjct: 975 MSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGV 1034
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPVAK++TVR+ L +AA +DW + Q DV NAFLHG++ E++YM P G +
Sbjct: 1035 DYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDP 1094
Query: 121 LKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVDD 180
KVC+L K+LYGLKQ+PR WF + + ++K +G+ S SD++LF +G +++YVDD
Sbjct: 1095 SKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGIFVHVLVYVDD 1154
Query: 181 MIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSET 240
+I++G+ D ++ + YL S F MK LG LKYF+GIEV+R+ G +L QRKY LD++SE
Sbjct: 1155 LIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEM 1214
Query: 241 GLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFM 300
GLL ++ + P+EQNHKL + ++D RY+ LVG+LIYL TRP+++Y+V+ ++QFM
Sbjct: 1215 GLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFM 1274
Query: 301 HDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTF 360
+PR+ H + R++RYLKS PG+GIL S+ L++ G+ D+D+A RRS +GYF
Sbjct: 1275 QNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQ 1334
Query: 361 VGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNT 420
+G ++W++KKQP V+RSSAE E+R MA EL+W+K VL DLG +AM ++ D+
Sbjct: 1335 LGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSK 1394
Query: 421 SAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNE 480
SAI ++ NPVQH+RTKHVE+D HFI++ + G I FV S +QLAD+LTK + K
Sbjct: 1395 SAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRY 1454
Query: 481 SLLKLGMCDIHAP 493
L KLG+ D+HAP
Sbjct: 1455 FLRKLGILDVHAP 1467
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301700|pir||G84542 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 490 bits (1262), Expect = e-137
Identities = 235/487 (48%), Positives = 341/487 (69%), Gaps = 2/487 (0%)
Query: 9 KKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGVDYQETFAP 68
++N+TW + LP GK+ +G +WV+ +KH +DG+++RYKARLVA G Q G DY ETFAP
Sbjct: 848 EENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAP 907
Query: 69 VAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNGLKVCKLKK 128
VAK+ TVR+ L +A ++W + Q DV NAFLHG++ E++YM PPG S+ KVC+L+K
Sbjct: 908 VAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFEASHPNKVCRLRK 967
Query: 129 ALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLF-LKRGEGKITALIIYVDDMIVTGNN 187
ALYGLKQ+PR WF + T ++K +G++ S +D++LF L +G +I ++IYVDD+I+TGN+
Sbjct: 968 ALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIK-ILIYVDDLIITGNS 1026
Query: 188 QDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSETGLLASKS 247
Q ++YL S F MK LG LKYF+GIEVARS GI++CQRKY LD++SETGLL K
Sbjct: 1027 QRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKP 1086
Query: 248 AETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFMHDPRKPH 307
A P+EQNHKL + +TD RY+ LVG+LIYL+ TR D+ ++V+++++FM +PR+ H
Sbjct: 1087 ANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDH 1146
Query: 308 MDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTFVGGNLVT 367
R++RYLK+ PG+G+ +G ++ G+ D+DWAG RRS +GYF G + ++
Sbjct: 1147 WAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFGDSPIS 1206
Query: 368 WRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNTSAIEIAH 427
W++KKQ V++SSAE E+R M+ ELLW+K +L LG + M + CD+ SAI IA
Sbjct: 1207 WKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSAIYIAT 1266
Query: 428 NPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNESLLKLGM 487
NPV H+RTKH+EID HF++++ G I V + QLAD+ TK + F+ +KLG+
Sbjct: 1267 NPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFSAFRIKLGI 1326
Query: 488 CDIHAPT 494
+++APT
Sbjct: 1327 RNLYAPT 1333
>pir||E96608 probable retroelement polyprotein F25P12.89 [imported] - Arabidopsis
thaliana gi|9954746|gb|AAG09097.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 484 bits (1247), Expect = e-135
Identities = 232/490 (47%), Positives = 335/490 (68%)
Query: 4 EMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGVDYQ 63
E+ +L+ TW + LP GKK +GC+WVF +K+K+DGT++R+KARLV G Q+ G+DY
Sbjct: 996 EIGSLENLGTWTVEDLPPGKKALGCKWVFRLKYKSDGTLERHKARLVVLGNNQTEGLDYT 1055
Query: 64 ETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNGLKV 123
ETFAPVAK+ TVR L + DW + Q DV NAFLHG++ E++YM PPG + KV
Sbjct: 1056 ETFAPVAKMVTVRAFLQQVVSLDWEVHQMDVHNAFLHGDLDEEVYMQFPPGFRTGDKTKV 1115
Query: 124 CKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVDDMIV 183
C+L+K+LYGLKQ+PR WF + T ++K +G+ SD++LF+ G +++YVDD+I+
Sbjct: 1116 CRLRKSLYGLKQAPRCWFAKLTSALKNYGFIQDISDYSLFIFHKNGVRLHVLVYVDDLII 1175
Query: 184 TGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSETGLL 243
TG I+ + YL+S F MK LG L+YF+GIEVARS GI+LCQRKY LD+++ETGLL
Sbjct: 1176 TGTTIAVITEFKHYLSSCFYMKDLGILRYFLGIEVARSPEGIYLCQRKYALDIITETGLL 1235
Query: 244 ASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFMHDP 303
K A P++QNHKL I D RY+ LVG++IYL+ TRP+++Y ++++SQFMH+P
Sbjct: 1236 GVKPASFPLDQNHKLAFATGETIDDPLRYRRLVGRIIYLATTRPELSYVIHILSQFMHNP 1295
Query: 304 RKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTFVGG 363
+ H + R++RYLKS+PG+GIL N L + + D+D+ RS +G+F +GG
Sbjct: 1296 KPAHWEAALRVVRYLKSSPGQGILLRANTPLVLSAWCDSDFGACPHSDRSLTGWFIQLGG 1355
Query: 364 NLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNTSAI 423
+ ++W+++KQ VV+RSSAE E+R MA + E++W++ +L LG +L+ D+ SAI
Sbjct: 1356 SPLSWKTQKQNVVSRSSAEAEYRAMAETVSEIIWIRELLPALGIPCTAPTTLHSDSLSAI 1415
Query: 424 EIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNESLL 483
+A NPV H RTKHV D HFI+++L GTI V + QLAD+LTK + K F + L
Sbjct: 1416 SLAANPVYHARTKHVRRDVHFIRDELVNGTIATKHVSTTSQLADILTKALGRKEFADFLA 1475
Query: 484 KLGMCDIHAP 493
KLG+C++H P
Sbjct: 1476 KLGICNLHIP 1485
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 477 bits (1227), Expect = e-133
Identities = 230/470 (48%), Positives = 330/470 (69%), Gaps = 5/470 (1%)
Query: 4 EMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGVDYQ 63
E+T L+ N TW + +LP GKK VGC+WV+ IK ADG+++RYKARLVAKGYTQ+ G+DY
Sbjct: 934 EITALEDNGTWVVCSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAKGYTQTEGLDYV 993
Query: 64 ETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNGLK- 122
+TF+PVAKL TV++L+++AA + W L Q D+ NAFL+G + E+IYM PPG G
Sbjct: 994 DTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLPPGYSPRQGDSF 1053
Query: 123 ----VCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYV 178
VC+LKK+LYGLKQ+ R W+ +F++S+K G+ S+ DHTLF ++ + A+++YV
Sbjct: 1054 PPNAVCRLKKSLYGLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLVYV 1113
Query: 179 DDMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLS 238
DD+I+ + E L+ L +++ LG L+YF+G+E+AR+ GI +CQRKYTL+LL+
Sbjct: 1114 DDIIIASSCDRETELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLELLA 1173
Query: 239 ETGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQ 298
ETGLL KS+ P+E N KL I D Y+ LVGKL+YL+ TRPDITYAV+ + Q
Sbjct: 1174 ETGLLGCKSSSVPMEPNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQ 1233
Query: 299 FMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYF 358
F PR PH+ V +I+ YLK T G+G+ +S N L++ G+ D+D++ +D R+ T+GY
Sbjct: 1234 FTSAPRVPHLKAVYKIIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSCSDSRKLTTGYC 1293
Query: 359 TFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCD 418
F+G +LV W+SKKQ V++ SSAE E++ M++ + E++W++ +L DL + EA LYCD
Sbjct: 1294 MFLGTSLVAWKSKKQEVISMSSAEAEYKAMSMAVREMMWLRFLLEDLWIDVSEASVLYCD 1353
Query: 419 NTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADM 468
NT+AI IA+NPV H+RTKH+E D H I+EK+ G I VR+E QLAD+
Sbjct: 1354 NTAAIHIANNPVFHERTKHIERDYHHIREKIILGLIRTLHVRTENQLADI 1403
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 475 bits (1223), Expect = e-132
Identities = 228/498 (45%), Positives = 331/498 (65%), Gaps = 5/498 (1%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M EE+ + + NTW +V+LP KK +GC+WVFTIKH ADG+I+RYKARLVAKGYTQ G+
Sbjct: 933 MKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGL 992
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY+ETF+PVAKL +VR++L LAA W + Q D+ NAFL+G++ E+IYM PPG G
Sbjct: 993 DYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVG 1052
Query: 121 -----LKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALI 175
+C+L K++YGLKQ+ R W+ + + ++K G++ SN+DHTLF+K G + ++
Sbjct: 1053 EALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVL 1112
Query: 176 IYVDDMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLD 235
+YVDD+++ N+ D ++ L S F+++ LG KYF+GIE+ARS+ GI +CQRKY L+
Sbjct: 1113 VYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILE 1172
Query: 236 LLSETGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNV 295
LLS TG L SK + P++ + KL +TD Y+ LVGKL+YL TRPDI YAVN
Sbjct: 1173 LLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNT 1232
Query: 296 VSQFMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTS 355
+ QF H P H+ V ++LRYLK T G+G+ +S + + GYTD+D+ D RR +
Sbjct: 1233 LCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVA 1292
Query: 356 GYFTFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSL 415
Y F+G LV+W+SKKQ V+ S+AE EFR M+ G E++W+ + D L
Sbjct: 1293 AYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYL 1352
Query: 416 YCDNTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSS 475
YCDNT+A+ I +N V H+RTK VE+D + +E +++G + FV + +Q+AD LTK +
Sbjct: 1353 YCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPLTKAIHP 1412
Query: 476 KVFNESLLKLGMCDIHAP 493
F++ + K+G+C+I AP
Sbjct: 1413 AQFHKLIGKMGVCNIFAP 1430
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 473 bits (1216), Expect = e-132
Identities = 226/492 (45%), Positives = 339/492 (67%), Gaps = 6/492 (1%)
Query: 4 EMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGVDYQ 63
E+ ++K NTW++ TLP+GKK VGC+WVFT+K ADG ++RYKARLVAKGYTQ G+DY
Sbjct: 959 EIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYT 1018
Query: 64 ETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNGLK- 122
+TF+PVAK+ T+++LL ++A++ W L Q DV NAFL+GE+ E+I+M P G G+
Sbjct: 1019 DTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVL 1078
Query: 123 ----VCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYV 178
V +LK+++YGLKQ+ R WF +F+ S+ + G+K ++ DHTLFLK +G+ +++YV
Sbjct: 1079 PSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYV 1138
Query: 179 DDMIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLS 238
DD+++ ++ + L + L +F+++ LG+LKYF+G+EVAR+ GI +CQRKY L+LL
Sbjct: 1139 DDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQ 1198
Query: 239 ETGLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQ 298
TG+LA K P+ N K+ I D +Y+ +VGKL+YL+ TRPDIT+AVN + Q
Sbjct: 1199 STGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQ 1258
Query: 299 FMHDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYF 358
F PR H+ R+L+Y+K T G+G+ +S + L ++G+ D+DWA D RRST+ +
Sbjct: 1259 FSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTSFT 1318
Query: 359 TFVGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCD 418
FVG +L++WRSKKQ V+RSSAE E+R +AL CE++W+ ++L L P + LY D
Sbjct: 1319 MFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQASPPVPI-LYSD 1377
Query: 419 NTSAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVF 478
+T+AI IA NPV H+RTKH+++D H ++E+LD G + VR+E Q+AD+LTK + F
Sbjct: 1378 STAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPYQF 1437
Query: 479 NESLLKLGMCDI 490
K+ + +I
Sbjct: 1438 EHLKSKMSILNI 1449
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301698|pir||C84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1501
Score = 471 bits (1212), Expect = e-131
Identities = 226/494 (45%), Positives = 327/494 (65%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M E+ L+ N TWD+V LP GK +G +WVF K+ +DGT++RYKARLV +G Q G
Sbjct: 1008 MFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVEGE 1067
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY+ETFAPV ++ TVR LL A W + Q DV NAFLHG++ E++YM PPG +S+
Sbjct: 1068 DYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHP 1127
Query: 121 LKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVDD 180
KVC+L+K+LYGLKQ+PR WF + + S+ FG+ S D++LF ++IYVDD
Sbjct: 1128 DKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDD 1187
Query: 181 MIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSET 240
+++ GN+ + + YL+ F MK LG LKYF+GIEV+R GIFL QRKY LD+++++
Sbjct: 1188 LLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADS 1247
Query: 241 GLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFM 300
G L S+ A TP+EQNH L ++D Y+ LVG+L+YL HTRP+++Y+V+V++QFM
Sbjct: 1248 GNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFM 1307
Query: 301 HDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTF 360
+PR+ H D R++RYLK +PG+GIL + + L +E Y D+DW RRS S Y
Sbjct: 1308 QNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVVL 1367
Query: 361 VGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNT 420
+GG+ ++W++KKQ V+ SSAE E+R M+ + E+ W++ +L +LG E LYCD+
Sbjct: 1368 LGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDSK 1427
Query: 421 SAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNE 480
+AI IA NPV H+RTKH+E D H +++ + G I VR+ +QLAD+ TK + F
Sbjct: 1428 AAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQLADVFTKALGRNQFLY 1487
Query: 481 SLLKLGMCDIHAPT 494
+ KLG+ ++H PT
Sbjct: 1488 LMSKLGVQNLHTPT 1501
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 470 bits (1209), Expect = e-131
Identities = 226/494 (45%), Positives = 328/494 (65%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M +E+ L+ N TWD+V LP GK +G +WV+ K ADGT++RYKARLV +G Q G
Sbjct: 998 MYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERYKARLVVQGNNQIEGE 1057
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY ETFAPV K+ TVR LL L A W + Q DV NAFLHG++ E++YM PPG +S+
Sbjct: 1058 DYTETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHP 1117
Query: 121 LKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVDD 180
KVC+L+K+LYGLKQ+PR WF + + ++K FG+ D++ F +G +++YVDD
Sbjct: 1118 DKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDD 1177
Query: 181 MIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSET 240
+I+ GN++ + ++YL F MK LG LKYF+GIEV+R GIFL QRKY LD++S++
Sbjct: 1178 LIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGPDGIFLSQRKYALDIISDS 1237
Query: 241 GLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFM 300
G L ++ A TP+EQNH L + D ++ LVG+L+YL HTRP+++Y+V+V+SQFM
Sbjct: 1238 GTLGARPAYTPLEQNHHLASDDGPLLQDPKPFRRLVGRLLYLLHTRPELSYSVHVLSQFM 1297
Query: 301 HDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTF 360
PR+ H++ RI+RYLK +PG+GIL S+N L +E Y D+D+ RRS S Y
Sbjct: 1298 QAPREAHLEAAMRIVRYLKGSPGQGILLSSNKDLTLEVYCDSDFQSCPLTRRSLSAYVVL 1357
Query: 361 VGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNT 420
+GG+ ++W++KKQ V+ SSAE E+R M++ + E+ W+ +L +LG L+CD+
Sbjct: 1358 LGGSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTRLFCDSK 1417
Query: 421 SAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNE 480
+AI IA NPV H+RTKH+E D H +++ + G I VR+ +QLAD+ TK + F
Sbjct: 1418 AAISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQLADIFTKALGRNQFIY 1477
Query: 481 SLLKLGMCDIHAPT 494
+ KLG+ ++H PT
Sbjct: 1478 LMSKLGIQNLHTPT 1491
>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 466 bits (1199), Expect = e-130
Identities = 234/487 (48%), Positives = 325/487 (66%), Gaps = 1/487 (0%)
Query: 1 MVEEMTTLKKNNTWDLVTLPRGKKTVGCRWVFTIKHKADGTIDRYKARLVAKGYTQSYGV 60
M EE++ L K +TWDLV LP GK VGCRWV+ IK +DG+I+RYKARLVAKGY+Q YG+
Sbjct: 891 MDEELSALHKTDTWDLVPLPPGKSVVGCRWVYKIKTNSDGSIERYKARLVAKGYSQQYGM 950
Query: 61 DYQETFAPVAKLNTVRILLSLAANQDWPLLQFDVKNAFLHGEISEDIYMDTPPGMVYSNG 120
DY+ETFAP+AK+ T+R L+++A+ + W + Q DVKNAFL+G++ E++YM PPG+ + +G
Sbjct: 951 DYEETFAPIAKMTTIRTLIAVASIRQWHISQLDVKNAFLNGDLQEEVYMAPPPGISHDSG 1010
Query: 121 LKVCKLKKALYGLKQSPRAWFGRFTKSMKTFGYKASNSDHTLFLKRGEGKITALIIYVDD 180
VCKLKKALYGLKQ+PRAWF +F+ + + G+ +S+ D LF+K + L +YVDD
Sbjct: 1011 Y-VCKLKKALYGLKQAPRAWFEKFSIVISSLGFVSSSHDSALFIKCTDAGRIILSLYVDD 1069
Query: 181 MIVTGNNQDEISSLQKYLTSKFEMKQLGNLKYFMGIEVARSKHGIFLCQRKYTLDLLSET 240
MI+TG++ D IS L+ L +FEMK LG L+YF+GIEVA S G L Q KY ++L
Sbjct: 1070 MIITGDDIDGISVLKTELARRFEMKDLGYLRYFLGIEVAYSPRGYLLSQSKYVANILERA 1129
Query: 241 GLLASKSAETPIEQNHKLFHCLNSNITDKGRYQSLVGKLIYLSHTRPDITYAVNVVSQFM 300
L +K+ +TPIE N + + D Y+++VG L+YL+ T PDI YAV+VVSQF+
Sbjct: 1130 RLTDNKTVDTPIEVNARYSSSDGLPLIDPTLYRTIVGSLVYLTITHPDIAYAVHVVSQFV 1189
Query: 301 HDPRKPHMDVVERILRYLKSTPGKGILFSNNGHLRVEGYTDADWAGSADDRRSTSGYFTF 360
P H V RILRYL+ T + +L S+ L + Y+DAD DR+S +G+ F
Sbjct: 1190 ASPTTIHWAAVLRILRYLRGTVFQSLLLSSTSSLELRAYSDADHGSDPTDRKSVTGFCIF 1249
Query: 361 VGGNLVTWRSKKQPVVARSSAEVEFRGMALGMCELLWVKSVLSDLGFEPKEAMSLYCDNT 420
+G +L++W+SKKQ +V++SS E E+ MA E++W + +L+D+G +YCDN
Sbjct: 1250 LGDSLISWKSKKQSIVSQSSTEAEYCAMASTTKEIVWSRWLLADMGISFSHLTPMYCDNQ 1309
Query: 421 SAIEIAHNPVQHDRTKHVEIDRHFIKEKLDAGTIVFPFVRSEQQLADMLTKGVSSKVFNE 480
S+I+IAHN V H+RTKH+EID H + L GTI PFV S Q+AD TK S F
Sbjct: 1310 SSIQIAHNSVFHERTKHIEIDCHLTRHHLKHGTIALPFVPSSLQIADFFTKAHSISRFCF 1369
Query: 481 SLLKLGM 487
+ KL M
Sbjct: 1370 LVGKLSM 1376
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 825,651,777
Number of Sequences: 2540612
Number of extensions: 33722248
Number of successful extensions: 75092
Number of sequences better than 10.0: 1680
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 70294
Number of HSP's gapped (non-prelim): 2174
length of query: 494
length of database: 863,360,394
effective HSP length: 132
effective length of query: 362
effective length of database: 527,999,610
effective search space: 191135858820
effective search space used: 191135858820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)
Medicago: description of AC149600.1