BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149574.9 + phase: 2 /pseudo
(88 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64729.1| nucleic acid binding protein-like [Arabidopsis th... 97 1e-19
gb|AAC26230.1| similar to Medicago sativa nucleic acid binding p... 95 5e-19
gb|AAW39006.1| At5g20510 [Arabidopsis thaliana] gi|54261727|gb|A... 88 6e-17
gb|AAP12848.1| At1g14510 [Arabidopsis thaliana] gi|21593666|gb|A... 82 4e-15
gb|AAF43952.1| Contains similarity to an Alfalfa nucleic acid bi... 82 4e-15
gb|AAM47893.1| nucleic acid binding protein-like [Arabidopsis th... 80 1e-14
gb|AAV25644.1| putative nucleic acid binding protein [Oryza sati... 78 6e-14
gb|AAM65374.1| putative PHD-type zinc finger protein [Arabidopsi... 77 8e-14
gb|AAO50537.1| putative PHD-type zinc finger protein [Arabidopsi... 77 8e-14
pir||T00616 probable nucleic acid-binding protein T8K22.23 - Ara... 77 8e-14
gb|AAY27262.1| putative alfin-like transcription factor [Solanum... 77 1e-13
gb|AAX95841.1| probable zinc finger protein - alfalfa (fragment)... 75 3e-13
ref|NP_915084.1| nucleic acid binding protein [Oryza sativa (jap... 72 3e-12
gb|AAD31844.1| nucleic acid binding protein [Oryza sativa] gi|11... 72 3e-12
gb|AAC98962.1| nucleic acid binding protein [Oryza sativa] 71 6e-12
ref|XP_466276.1| putative nucleic acid binding protein [Oryza sa... 69 2e-11
gb|AAA20093.2| Alfin-1 [Medicago sativa] gi|7488751|pir||T09646 ... 68 5e-11
ref|XP_479105.1| putative nucleic acid binding protein [Oryza sa... 66 3e-10
gb|AAK55785.1| Putative nucleic acid binding protein [Oryza sativa] 66 3e-10
gb|AAF01506.1| putative nucleic acid binding protein [Arabidopsi... 61 6e-09
>gb|AAM64729.1| nucleic acid binding protein-like [Arabidopsis thaliana]
gi|15239624|ref|NP_197993.1| PHD finger family protein
[Arabidopsis thaliana]
Length = 255
Score = 97.1 bits (240), Expect = 1e-19
Identities = 51/95 (53%), Positives = 68/95 (70%), Gaps = 9/95 (9%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
KRLF +NDLPTIFEVV G+AKKQ K+K SVS+++SN+SKS SK AK+SKP K+
Sbjct: 121 KRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKD 180
Query: 61 DD-------EEVDDEEEYQGECTACGENYVSASDE 88
D+ EE D++E+ + +C ACGE+Y A+DE
Sbjct: 181 DEEEEEEGVEEEDEDEQGETQCGACGESY--AADE 213
>gb|AAC26230.1| similar to Medicago sativa nucleic acid binding protein Alfin-1
(GB:L07291) [Arabidopsis thaliana]
gi|7486722|pir||T01840 hypothetical protein F9D12.13 -
Arabidopsis thaliana
Length = 251
Score = 94.7 bits (234), Expect = 5e-19
Identities = 55/102 (53%), Positives = 72/102 (69%), Gaps = 16/102 (15%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSK------ARGSE-LAKY 53
KRLF +NDLPTIFEVV G+AKKQ K+K SVS+++SN+SKS SK RGSE AK+
Sbjct: 110 KRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKVETLFSTRGSESRAKF 169
Query: 54 SKPPAKEDD-------EEVDDEEEYQGECTACGENYVSASDE 88
SKP K+D+ EE D++E+ + +C ACGE+Y A+DE
Sbjct: 170 SKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESY--AADE 209
>gb|AAW39006.1| At5g20510 [Arabidopsis thaliana] gi|54261727|gb|AAV31167.1|
At5g20510 [Arabidopsis thaliana]
gi|30687843|ref|NP_197551.2| PHD finger family protein
[Arabidopsis thaliana]
Length = 260
Score = 87.8 bits (216), Expect = 6e-17
Identities = 51/100 (51%), Positives = 68/100 (68%), Gaps = 15/100 (15%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKP---- 56
KRLF+ IN++PT++EVVTG+A+KQTKE PS ++ N N+SKS SK RG E +K SK
Sbjct: 122 KRLFSMINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSKMRGLE-SKSSKTIHAK 180
Query: 57 ------PAKEDDEEVDDEEEYQGE--CTACGENYVSASDE 88
+E +EE D++E+ GE C ACG+NY ASDE
Sbjct: 181 DEEEGLELEEGEEEEDEDEDEHGETLCGACGDNY--ASDE 218
>gb|AAP12848.1| At1g14510 [Arabidopsis thaliana] gi|21593666|gb|AAM65633.1| nucleic
acid binding protein (alfin-1), putative [Arabidopsis
thaliana] gi|15223786|ref|NP_172903.1| PHD finger family
protein [Arabidopsis thaliana]
Length = 252
Score = 81.6 bits (200), Expect = 4e-15
Identities = 48/88 (54%), Positives = 60/88 (67%), Gaps = 9/88 (10%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSK-SGSKARGSE----LAKYSK 55
KRLF INDLPTIFEVVTG+AK + K ++HNS++SK SG K R SE +K S
Sbjct: 121 KRLFQMINDLPTIFEVVTGNAK---QSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSP 177
Query: 56 PPAKEDDEEVDDEEEYQGE-CTACGENY 82
PP KED+ +DE++ QG C ACG+NY
Sbjct: 178 PPRKEDESGDEDEDDEQGAVCGACGDNY 205
>gb|AAF43952.1| Contains similarity to an Alfalfa nucleic acid binding protein from
Medicago sativa gb|L07291.1 and contains a PHD-finger
PF|00628 domain. ESTs gb|AI995787, gb|AA721930,
gb|T42258 come from this gene. [Arabidopsis thaliana]
gi|25346630|pir||A86280 F14L17.29 protein - Arabidopsis
thaliana
Length = 273
Score = 81.6 bits (200), Expect = 4e-15
Identities = 48/88 (54%), Positives = 60/88 (67%), Gaps = 9/88 (10%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSK-SGSKARGSE----LAKYSK 55
KRLF INDLPTIFEVVTG+AK + K ++HNS++SK SG K R SE +K S
Sbjct: 142 KRLFQMINDLPTIFEVVTGNAK---QSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSP 198
Query: 56 PPAKEDDEEVDDEEEYQGE-CTACGENY 82
PP KED+ +DE++ QG C ACG+NY
Sbjct: 199 PPRKEDESGDEDEDDEQGAVCGACGDNY 226
>gb|AAM47893.1| nucleic acid binding protein-like [Arabidopsis thaliana]
gi|7543887|emb|CAB87196.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|17065550|gb|AAL32929.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|15229157|ref|NP_189865.1| PHD finger family protein
[Arabidopsis thaliana] gi|11281497|pir||T47337 nucleic
acid binding protein-like - Arabidopsis thaliana
Length = 250
Score = 80.5 bits (197), Expect = 1e-14
Identities = 46/84 (54%), Positives = 56/84 (65%), Gaps = 5/84 (5%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
KRLF IND+PTIFEVVTG AK K+K S ++ N NKSKS SK R SE KE
Sbjct: 122 KRLFNMINDVPTIFEVVTGMAK--AKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKE 179
Query: 61 DDEEVD-DEEEYQGE--CTACGEN 81
+DEE+D D+E+ GE C ACG++
Sbjct: 180 EDEEIDEDDEDDHGETLCGACGDS 203
>gb|AAV25644.1| putative nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 258
Score = 77.8 bits (190), Expect = 6e-14
Identities = 45/84 (53%), Positives = 55/84 (64%), Gaps = 5/84 (5%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPA-- 58
+RLF IN+LPTIFEVVTG+AKKQTKEK S++ NK S + R +K KPPA
Sbjct: 123 RRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSSKMQPRPESHSKAPKPPAPP 182
Query: 59 KEDDEEVD---DEEEYQGECTACG 79
K+DDE D DEEE + + T CG
Sbjct: 183 KDDDESGDEYADEEEEERDNTLCG 206
>gb|AAM65374.1| putative PHD-type zinc finger protein [Arabidopsis thaliana]
Length = 256
Score = 77.4 bits (189), Expect = 8e-14
Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 12/92 (13%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE----LAKYSKP 56
KRLF IN+LPTIFEVV+G+A KQ+K+ SV+++NS SG K+R SE +AK S P
Sbjct: 121 KRLFQMINELPTIFEVVSGNA-KQSKDL-SVNNNNSKSKPSGVKSRQSESLTKVAKMSSP 178
Query: 57 PAKEDDEEVDD-----EEEYQGE-CTACGENY 82
P KE++EE D+ E++ QG C ACG+NY
Sbjct: 179 PPKEEEEEEDESEDESEDDEQGAVCGACGDNY 210
>gb|AAO50537.1| putative PHD-type zinc finger protein [Arabidopsis thaliana]
gi|28393037|gb|AAO41953.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
gi|20197338|gb|AAM15031.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
gi|15226967|ref|NP_178351.1| PHD finger family protein
[Arabidopsis thaliana] gi|25346628|pir||A84437 probable
PHD-type zinc finger protein [imported] - Arabidopsis
thaliana
Length = 256
Score = 77.4 bits (189), Expect = 8e-14
Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 12/92 (13%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE----LAKYSKP 56
KRLF IN+LPTIFEVV+G+A KQ+K+ SV+++NS SG K+R SE +AK S P
Sbjct: 121 KRLFQMINELPTIFEVVSGNA-KQSKDL-SVNNNNSKSKPSGVKSRQSESLSKVAKMSSP 178
Query: 57 PAKEDDEEVDD-----EEEYQGE-CTACGENY 82
P KE++EE D+ E++ QG C ACG+NY
Sbjct: 179 PPKEEEEEEDESEDESEDDEQGAVCGACGDNY 210
>pir||T00616 probable nucleic acid-binding protein T8K22.23 - Arabidopsis
thaliana (fragment)
Length = 142
Score = 77.4 bits (189), Expect = 8e-14
Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 12/92 (13%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE----LAKYSKP 56
KRLF IN+LPTIFEVV+G+A KQ+K+ SV+++NS SG K+R SE +AK S P
Sbjct: 7 KRLFQMINELPTIFEVVSGNA-KQSKDL-SVNNNNSKSKPSGVKSRQSESLSKVAKMSSP 64
Query: 57 PAKEDDEEVDD-----EEEYQGE-CTACGENY 82
P KE++EE D+ E++ QG C ACG+NY
Sbjct: 65 PPKEEEEEEDESEDESEDDEQGAVCGACGDNY 96
>gb|AAY27262.1| putative alfin-like transcription factor [Solanum tuberosum]
Length = 248
Score = 76.6 bits (187), Expect = 1e-13
Identities = 51/95 (53%), Positives = 62/95 (64%), Gaps = 13/95 (13%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE---LAKYSKPP 57
KRLF INDLPT+FEVVTG+A KQT++ P +NSNKSKS K R E A PP
Sbjct: 118 KRLFQMINDLPTVFEVVTGAA-KQTRDPP---HNNSNKSKSSGKPRQPESQLKAVKVSPP 173
Query: 58 AKEDD--EEVDDEEEYQGE--CTACGENYVSASDE 88
E+D EE ++EE+ QG C ACG+NY A+DE
Sbjct: 174 KMENDSGEEEEEEEDEQGATLCGACGDNY--ATDE 206
>gb|AAX95841.1| probable zinc finger protein - alfalfa (fragment) [Oryza sativa
(japonica cultivar-group)] gi|62701860|gb|AAX92933.1|
probable zinc finger protein - alfalfa (fragment) [Oryza
sativa (japonica cultivar-group)]
Length = 264
Score = 75.5 bits (184), Expect = 3e-13
Identities = 43/88 (48%), Positives = 57/88 (63%), Gaps = 6/88 (6%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKS--KSGSKARGSELAKYSKPPA 58
KRLF+ IN+LPTI+EVVTG+AKKQ+KEK +S SNKS K + + PP
Sbjct: 119 KRLFSMINNLPTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKMPPPK 178
Query: 59 KEDD---EEVDDEEEYQGE-CTACGENY 82
EDD EE ++EE+++ C ACG+NY
Sbjct: 179 DEDDSGGEEEEEEEDHENTLCGACGDNY 206
>ref|NP_915084.1| nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)] gi|56785247|dbj|BAD82135.1| nucleic
acid binding protein [Oryza sativa (japonica
cultivar-group)] gi|20804953|dbj|BAB92630.1| nucleic
acid binding protein [Oryza sativa (japonica
cultivar-group)] gi|4091117|gb|AAC98969.1| nucleic acid
binding protein [Oryza sativa] gi|7489518|pir||T02745
nucleic acid binding protein - rice
Length = 272
Score = 72.4 bits (176), Expect = 3e-12
Identities = 44/87 (50%), Positives = 54/87 (61%), Gaps = 6/87 (6%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNK--SKSGSKARGSELAKYSKPPA 58
+RLF IN+LPTIFEVVTG+AKKQ KEK SS SNK SK SKA +K S P
Sbjct: 139 RRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKD 198
Query: 59 KE---DDEEVDDEEEYQGE-CTACGEN 81
+E DDE ++E+++ C CG N
Sbjct: 199 EEGSGDDEGEEEEDDHDNTLCGTCGTN 225
>gb|AAD31844.1| nucleic acid binding protein [Oryza sativa] gi|11281498|pir||T51145
nucleic acid binding protein [imported] - rice
Length = 273
Score = 72.4 bits (176), Expect = 3e-12
Identities = 44/87 (50%), Positives = 54/87 (61%), Gaps = 6/87 (6%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNK--SKSGSKARGSELAKYSKPPA 58
+RLF IN+LPTIFEVVTG+AKKQ KEK SS SNK SK SKA +K S P
Sbjct: 140 RRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVQSKAESRSKSKLSAPKD 199
Query: 59 KE---DDEEVDDEEEYQGE-CTACGEN 81
+E DDE ++E+++ C CG N
Sbjct: 200 EEGSGDDEGEEEEDDHDNTLCGTCGTN 226
>gb|AAC98962.1| nucleic acid binding protein [Oryza sativa]
Length = 271
Score = 71.2 bits (173), Expect = 6e-12
Identities = 43/86 (50%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNK-SKSGSKARGSELAKYSKPPAK 59
+RLF IN+LPTIFEVVTG+AKKQ KEK SS SNK S SKA +K S P +
Sbjct: 139 RRLFNMINNLPTIFEVVTGAAKKQAKEKTPNSSSKSNKPSSKVSKAESRSKSKLSAPKDE 198
Query: 60 E---DDEEVDDEEEYQGE-CTACGEN 81
E DDE ++E+++ C CG N
Sbjct: 199 EGSGDDEGEEEEDDHDNTLCGTCGTN 224
>ref|XP_466276.1| putative nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)] gi|51964096|ref|XP_506831.1| PREDICTED
OJ1712_E04.22 gene product [Oryza sativa (japonica
cultivar-group)] gi|46390349|dbj|BAD15814.1| putative
nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)] gi|46390153|dbj|BAD15587.1| putative
nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 267
Score = 69.3 bits (168), Expect = 2e-11
Identities = 40/88 (45%), Positives = 53/88 (59%), Gaps = 6/88 (6%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
+RLFT IN LPT++EVVTG AKKQT K S S SNKS + + +K +KPP +
Sbjct: 138 RRLFTMINGLPTVYEVVTGIAKKQT--KVSNGSSKSNKSNPKPSKQSNSNSKPAKPPQPK 195
Query: 61 DDE----EVDDEEEYQGECTACGENYVS 84
D+E E ++E+ C ACGE Y +
Sbjct: 196 DEEDSGPEGTEDEDQAYMCGACGETYAN 223
>gb|AAA20093.2| Alfin-1 [Medicago sativa] gi|7488751|pir||T09646 probable zinc
finger protein - alfalfa (fragment)
Length = 257
Score = 68.2 bits (165), Expect = 5e-11
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSEL----AKYSKP 56
KRLF INDLPT+FE+ TG+AK+ + + ++ +++K KS K+R SE K S P
Sbjct: 122 KRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAP 181
Query: 57 PAKEDD---EEVDDEEEYQGECTACGENY 82
+E D EE +D++E C ACG+NY
Sbjct: 182 VKEEVDSGEEEEEDDDEQGATCGACGDNY 210
>ref|XP_479105.1| putative nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)] gi|50509861|dbj|BAD32033.1| putative
nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)] gi|34394182|dbj|BAC84634.1| putative
nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 278
Score = 65.9 bits (159), Expect = 3e-10
Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 25/104 (24%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE-LAKYSK---- 55
KRLF INDLPTIFEVV+G +K + PS ++H+++KSKS +K + SE AK K
Sbjct: 119 KRLFGMINDLPTIFEVVSGKSK---AKPPSANNHSNSKSKSSNKTKSSEPRAKQPKPQPQ 175
Query: 56 PPAKEDDEE----VDDE-----------EEYQGE--CTACGENY 82
PP K + E DDE EE GE C ACGE+Y
Sbjct: 176 PPVKNEGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACGESY 219
>gb|AAK55785.1| Putative nucleic acid binding protein [Oryza sativa]
Length = 369
Score = 65.9 bits (159), Expect = 3e-10
Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 25/104 (24%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSE-LAKYSK---- 55
KRLF INDLPTIFEVV+G +K + PS ++H+++KSKS +K + SE AK K
Sbjct: 119 KRLFGMINDLPTIFEVVSGKSK---AKPPSANNHSNSKSKSSNKTKSSEPRAKQPKPQPQ 175
Query: 56 PPAKEDDEE----VDDE-----------EEYQGE--CTACGENY 82
PP K + E DDE EE GE C ACGE+Y
Sbjct: 176 PPVKNEGREEEGGPDDEEGGGGGGGGGREEEHGETLCGACGESY 219
>gb|AAF01506.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|23505823|gb|AAN28771.1| At3g11200/F11B9.12
[Arabidopsis thaliana] gi|21537350|gb|AAM61691.1|
putative nucleic acid binding protein [Arabidopsis
thaliana] gi|16604430|gb|AAL24221.1| At3g11200/F11B9.12
[Arabidopsis thaliana] gi|12321890|gb|AAG50986.1|
PHD-finger protein, putative; 47584-45553 [Arabidopsis
thaliana] gi|15229696|ref|NP_187729.1| PHD finger family
protein [Arabidopsis thaliana]
Length = 246
Score = 61.2 bits (147), Expect = 6e-09
Identities = 36/86 (41%), Positives = 52/86 (59%), Gaps = 5/86 (5%)
Query: 1 KRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKE 60
KRLF+ INDLPT+F+VVTG K KP SS + +KS++G+K K S P E
Sbjct: 120 KRLFSLINDLPTLFDVVTG-RKAMKDNKP--SSDSGSKSRNGTKRSIDGQTKSSTPKLME 176
Query: 61 DDEEVDDEEEYQGE--CTACGENYVS 84
+ E ++EE+ G+ C +CG +Y +
Sbjct: 177 ESYEEEEEEDEHGDTLCGSCGGHYTN 202
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.299 0.121 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,409,744
Number of Sequences: 2540612
Number of extensions: 5875884
Number of successful extensions: 46897
Number of sequences better than 10.0: 385
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 45729
Number of HSP's gapped (non-prelim): 963
length of query: 88
length of database: 863,360,394
effective HSP length: 64
effective length of query: 24
effective length of database: 700,761,226
effective search space: 16818269424
effective search space used: 16818269424
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC149574.9