BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149496.11 - phase: 0 /pseudo
(1173 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 1516 0.0
emb|CAB80804.1| putative retrotransposon protein [Arabidopsis th... 1195 0.0
gb|AAP44605.1| putative polyprotein [Oryza sativa (japonica cult... 1094 0.0
gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-... 871 0.0
gb|AAP52343.1| putative retroelement [Oryza sativa (japonica cul... 851 0.0
ref|XP_462979.1| putative polyprotein [Oryza sativa (japonica cu... 773 0.0
gb|AAR06328.1| putative polyprotein [Oryza sativa (japonica cult... 707 0.0
emb|CAD40806.1| OSJNBb0076A22.18 [Oryza sativa (japonica cultiva... 657 0.0
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 645 0.0
pir||T02206 hypothetical protein - common tobacco retrotransposo... 639 0.0
ref|XP_493793.1| unnamed protein product [Oryza sativa (japonica... 634 e-180
ref|NP_918918.1| putative retrovirus-related pol polyprotein fro... 634 e-180
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa (j... 632 e-179
ref|NP_918597.1| putative retrovirus-related pol polyprotein [Or... 632 e-179
ref|NP_918288.1| putative polyprotein [Oryza sativa (japonica cu... 632 e-179
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa (japonica cultivar... 632 e-179
gb|AAR01682.1| putative gag and pol protein [Oryza sativa (japon... 632 e-179
ref|XP_468569.1| Putative polyprotein from transposon TNT [Oryza... 631 e-179
ref|XP_475999.1| Putative polyprotein [Oryza sativa (japonica cu... 631 e-179
gb|AAU10767.1| hypothetical protein [Oryza sativa (japonica cult... 631 e-179
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 1516 bits (3925), Expect = 0.0
Identities = 748/1169 (63%), Positives = 906/1169 (76%), Gaps = 10/1169 (0%)
Query: 8 STKILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHA 67
ST LRS++EKEKL TNF+DW RN+RIVL E+K YVL+ P PE P A+A R
Sbjct: 8 STFNLRSILEKEKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATARRGFE 67
Query: 68 KHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTK 127
KH ND++++SC+MLA+M+PELQKQ+E A I+ L+ ++E QAR ERF+ SK+LF+ +
Sbjct: 68 KHTNDALDISCLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSLFACR 127
Query: 128 LSEGGPVGPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKT 187
L EG PV PHV+KMIGY E+L +LGF L QEL D++LQSLP S F+ N+ MN+MD+T
Sbjct: 128 LVEGNPVSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRT 187
Query: 188 LPQLAAMLRTAEKNMKGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALK 247
L +L ML+T E++++ G ++M+ N K K KK + +I + + K K
Sbjct: 188 LAELHGMLKTVEESIQKNGH--HVMMMQNAKRKPPVKKLCTKRKLTPDEIASASNAKKGK 245
Query: 248 PTGGVAKDDKCFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFVIEINMSTST--SWVL 305
G A D CFYC GHWK N KY+ED K T+++GI VI+IN++TS SWV
Sbjct: 246 K-GSAASDAVCFYCKETGHWKRNCKKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVF 304
Query: 306 DTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLPSGLLLNLENCY 365
DTG +H C +QG+R+SR L +GEV+LRVGNGA VA +AVGT L LPSGL+L L NCY
Sbjct: 305 DTGSVAHSCKSLQGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCY 364
Query: 366 YVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYVLDLDM-PIYNI 424
VP + +N+IS SCL G++F N CS+YL ++ Y +A L NGLYVL+L+ PIYNI
Sbjct: 365 CVPTLCQNVISASCLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNI 424
Query: 425 NAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRSCLLGKMTKAP 484
N +R N++NPT++WHCRLGHIN+ R+ KLHKDG L SFDFES+ETC SCLLGKMTKAP
Sbjct: 425 NTERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAP 484
Query: 485 FTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLMKHKSESFTFF 544
FTG ERASDLL L+HTDVCGP++ TARGG+ YFIT TDDFSR+GY+YLM+HKSESF F
Sbjct: 485 FTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKF 544
Query: 545 KEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTPQWNGVSERRN 604
KEFQNEV+N LGK IK LRSDRGGEY+S EF NHLK+CGI+ QLTPPGTPQWNGVSERRN
Sbjct: 545 KEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRN 604
Query: 605 RTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNGRKPNVGHFKI 664
RTLLDMVRSMMS ++LP WGYAL TAA TLNRVPSK+VEKTPYEIW G+ P++ KI
Sbjct: 605 RTLLDMVRSMMSQSDLPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKI 664
Query: 665 WGCEAYIKRLMSTKLEQKSEKCFFVGYPKETRGYYFYKPPEGTIVVAKTGVFLEKDFVSR 724
WGCEAY+KRL S KL KS+KCF VGYPKET+GYYFY + + VA+ GVFLEK+F+SR
Sbjct: 665 WGCEAYVKRLQSDKLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSR 724
Query: 725 RISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVTQEPRRSSRIRQEPERYGYL 784
R+SG +V L+E+Q+ T E Q+ Q+V P T PRRS R R+ P+RY
Sbjct: 725 RVSGIRVHLEEVQETPETVSATTEPQQEDQSVAP--PVVDTPAPRRSERSRRAPDRYTG- 781
Query: 785 ISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSMYTNQVWNLIDAPEGINPIG 844
+++ D+LL+D DEP TY EA+ G + KWL AMKSE++SMY NQVWNL+D P+G+ I
Sbjct: 782 -AEQRDILLLDNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIE 840
Query: 845 CKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDY 904
CKW+FKKK DMDG V YKARLVAKGFKQI GVDYDETFSPVAM+KSIRI+LAIAAY DY
Sbjct: 841 CKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDY 900
Query: 905 EIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDE 964
EIWQMDVKTAFLNGNL EDVYM QP+GF DP++ K+CKLQ+SIYGLKQASRSWN+RFDE
Sbjct: 901 EIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDE 960
Query: 965 TVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGNDIPTLQEIKTWLRKCFSMKD 1024
++ +GFIKNE+E CVYKKVSGS + FLILYVDDILLIGNDIP L+ +K+ L+ FSMKD
Sbjct: 961 VIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKD 1020
Query: 1025 LGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHESKKGFIPMSSGLNLSKTQSP 1084
LGEA+YILGIRIYRDRS+RL+GLSQ YIDKVL+RFNMH+SKKGF+PMS G+NLSK Q P
Sbjct: 1021 LGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCP 1080
Query: 1085 STDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSRYQSNPGNEYWIAVKNILKY 1144
T DER++M +PYASAIGSIMYAM+CTRPDVSYALSATSRYQS+PG +W AVKNILKY
Sbjct: 1081 QTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKY 1140
Query: 1145 LRRTKDTFLIYGG*EELSVIGYIDASFQT 1173
LRRTKD FL+YGG E+L V GY DASFQT
Sbjct: 1141 LRRTKDMFLVYGGEEDLVVSGYTDASFQT 1169
>emb|CAB80804.1| putative retrotransposon protein [Arabidopsis thaliana]
gi|3319362|gb|AAC26250.1| contains similarity to reverse
transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis
thaliana] gi|7488299|pir||T01860 reverse transcriptase
homolog T7M24.7 - Arabidopsis thaliana
Length = 964
Score = 1195 bits (3091), Expect = 0.0
Identities = 561/817 (68%), Positives = 669/817 (81%), Gaps = 1/817 (0%)
Query: 357 LLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYVLD 416
++L L+NCYYVPAI++NIIS+SCLD GF F+IKNKCCS D++ Y +A L NGL+VL+
Sbjct: 1 MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLN 60
Query: 417 LDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRSCL 476
MPIYNI K+ K N+LNPT+LWHCRLGHINE I KLH DG L+SFD+ESYETC SCL
Sbjct: 61 QSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCL 120
Query: 477 LGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLMKH 536
LGKMTKAPFTG ERASDLLGLIHTDVCGP++ +ARG + YFIT TDDFSR+GYVYLMKH
Sbjct: 121 LGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKH 180
Query: 537 KSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTPQW 596
KS+SF FKEFQNEV+NQ GK IK LRSDRGGEYLS F +HL+ECGI+SQLTPPGTPQW
Sbjct: 181 KSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQW 240
Query: 597 NGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNGRK 656
NGVSERRNRTLLDMVRSMMSH +LP+ WGYAL T+A+ LNR PSK+VEKTPYEIW G+
Sbjct: 241 NGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKV 300
Query: 657 PNVGHFKIWGCEAYIKRLMSTKLEQKSEKCFFVGYPKETRGYYFYKPPEGTIVVAKTGVF 716
PN+ KIWGCE+Y KRL++ KL KS+KC+FVGYPKET+GYYFY P + + V + G F
Sbjct: 301 PNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAF 360
Query: 717 LEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVTQEPRRSSRIRQ 776
LE++F+S+ SGSKV L+E+++PQ ++P ++ P V E RRS R R
Sbjct: 361 LEREFLSKGTSGSKVLLEEVREPQG-DVPTSQEEHQLDLRRVVEPILVEPEVRRSERSRH 419
Query: 777 EPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSMYTNQVWNLIDA 836
EP+R+ + + + +++ DEP +Y EA+ GP+ +KWLEA KSEM+SM N+VW L+D
Sbjct: 420 EPDRFRDWVMDDHALFMIESDEPTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTLVDL 479
Query: 837 PEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILL 896
P+G+ PI CKW+FKKKIDMDG + YKA LVAKG+KQ+HG+DYDET+SPVAM+KSIRILL
Sbjct: 480 PDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILL 539
Query: 897 AIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASR 956
A AA++DYEIWQMDVKTAFLNGNL E VYMTQPEGF P+A +KVCKL RSIYGLKQASR
Sbjct: 540 ATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASR 599
Query: 957 SWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGNDIPTLQEIKTWL 1016
SWNLRF+E ++++ FI+NE+EPCVYKK SGS V+FL+LYVDDILL+GNDIP LQ +KTWL
Sbjct: 600 SWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWL 659
Query: 1017 RKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHESKKGFIPMSSGL 1076
CFSMKD+GEA+YILGIRIYRDR +++GLSQ YIDKVL RFNMH+SKKGFIPMS G+
Sbjct: 660 GSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGI 719
Query: 1077 NLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSRYQSNPGNEYWI 1136
LSKTQ PST DER+RM IPYASAIGSIMYAM+ TRPDV+ ALS TSRYQS+PG +WI
Sbjct: 720 TLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWI 779
Query: 1137 AVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASFQT 1173
V+NI KYLRRTKD FL+YGG EEL V GY DASFQT
Sbjct: 780 VVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQT 816
>gb|AAP44605.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|34896518|ref|NP_909603.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1161
Score = 1094 bits (2830), Expect = 0.0
Identities = 543/804 (67%), Positives = 636/804 (78%), Gaps = 37/804 (4%)
Query: 379 CLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYVLDLD-MPIYNINAKRLKPNELNPT 437
C + G+ F + CSVY ++I Y +A + NGLY+++LD +YNINAKR +PN LNPT
Sbjct: 256 CKETEGYGFRSVDNGCSVYYNDIFYFHAPMMNGLYIVNLDGCSVYNINAKRQRPNNLNPT 315
Query: 438 YLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRSCLLGKMTKAPFTGQGERASDLLG 497
++WHC LGHINE RI KLH+DG L SFDFES++TC SCLLGKMTKAPFTGQ ERAS+LLG
Sbjct: 316 FIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLG 375
Query: 498 LIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLMKHKSESFTFFKEFQNEVENQLGK 557
L+HTDVCGP++ TARGGF YFIT TD+FSR+GYVYLM+HKSESF F+EFQNEV+N LGK
Sbjct: 376 LVHTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGK 435
Query: 558 KIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSH 617
IK LRSDRGGEYLSLE+ NHLKECGI+ QLTPPGTPQWN VSERRNR LLDMVRSMMS
Sbjct: 436 TIKYLRSDRGGEYLSLEYGNHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQ 495
Query: 618 AELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNGRKPNVGHFKIWGCEAYIKRLMST 677
++P WGYAL TAA+TLNRVPSK+V+KTPYEIW G++P++ KIW CE
Sbjct: 496 TDMPLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWCCE--------- 546
Query: 678 KLEQKSEKCFFVGYPKETRGYYFYKPPEGTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQ 737
ET+GYYFY EG + VA+ GVFLEK+F+SR+ SGS V LKEIQ
Sbjct: 547 ----------------ETKGYYFYNREEGKVFVARHGVFLEKEFISRKDSGSMVRLKEIQ 590
Query: 738 DPQ-----STEIPVEEQG-QDTQTVMTENPAPVTQEP--RRSSRIRQEPERYGYLISQEG 789
+ ST+ VE+ Q + V+ E PV + P RRS RIR+ P RY L S +
Sbjct: 591 ETPENASTSTQPQVEQDVVQQVEQVVVE---PVVEAPASRRSERIRRTPARYALLTSGQR 647
Query: 790 DVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSMYTNQVWNLIDAPEGINPIGCKWVF 849
D+LL+D DEP TY EA+ GP+ EKWL AMKSE++SM+ NQVWNL+D P+G+ I CKW+F
Sbjct: 648 DILLLDNDEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIF 707
Query: 850 KKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDYEIWQM 909
KK D+DG V Y ARLVAKGF+QI GVDYDETFSPVAM+KSIRI+LAIAAY DYEIWQM
Sbjct: 708 KKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQM 767
Query: 910 DVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDETVQQY 969
DVKTAFLNGNL EDVYMTQP+GF DP++ KK+CKLQ+SIY LKQASRSWN+RFDE V+
Sbjct: 768 DVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKAL 827
Query: 970 GFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGNDIPTLQEIKTWLRKCFSMKDLGEAS 1029
GF+KNE+EPCVYKK+SGS + FLILYVDDILLIGNDIP L+ +KT L+ FSMKDLGEA+
Sbjct: 828 GFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAA 887
Query: 1030 YILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHESKKGFIPMSSGLNLSKTQSPSTDDE 1089
YILGIRIYRDRS+RL+GLSQ YIDKVL+RFNM +SKKGF+PMS G+NL K Q P T DE
Sbjct: 888 YILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDE 947
Query: 1090 RDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSRYQSNPGNEYWIAVKNILKYLRRTK 1149
R++M IPYASAIGSIMYAM+CTR DVSYALSATSRYQS+ G +WIAVKNILKYLRRTK
Sbjct: 948 RNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTK 1007
Query: 1150 DTFLIYGG*EELSVIGYIDASFQT 1173
D FL+YG EEL V GY DASFQT
Sbjct: 1008 DMFLVYGRQEELVVNGYTDASFQT 1031
Score = 230 bits (587), Expect = 2e-58
Identities = 119/255 (46%), Positives = 167/255 (64%), Gaps = 14/255 (5%)
Query: 12 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLN 71
LRS++EKEKLT TNF+DW RN+RIVL E K +VL P P P A AA R H K N
Sbjct: 11 LRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTEPFPANLPNNAPAAQRREHEKRCN 70
Query: 72 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 131
D +++SC+MLA+M+PELQ+Q+E + A +I L+ ++E+QAR ERF+ SK+LF+ +L+EG
Sbjct: 71 DYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEG 130
Query: 132 GPVGPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQL 191
V PHV+KMIGY+E+L +LGF L +EL DL+LQSLP S F+ NF MN++++TL +L
Sbjct: 131 NLVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAEL 190
Query: 192 AAMLRTAEKNMKGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGK-----IVAKPSTKAL 246
ML+TAE+++K ++ H +KPN K K K I + ++K
Sbjct: 191 HGMLKTAEESIKKNSNHVMVM---------HKRKPNNKKSGQKRKLNSDEITSTSNSKTK 241
Query: 247 KPTGGVAKDDKCFYC 261
G AKD +CF+C
Sbjct: 242 VQKTGSAKDAECFFC 256
>gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
gi|56382058|gb|AAV85747.1| Integrase core domain,
putative [Oryza sativa (japonica cultivar-group)]
Length = 1184
Score = 871 bits (2251), Expect = 0.0
Identities = 428/723 (59%), Positives = 538/723 (74%), Gaps = 33/723 (4%)
Query: 12 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLN 71
LRS++EKEKLT TN +DW RN+RIVL E K +VL P P P A AA R H K N
Sbjct: 11 LRSILEKEKLTGTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHEKRCN 70
Query: 72 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 131
D +++SC+MLA+M+PELQ+Q+E + A +I L+ ++E+QAR +RF+ SK+LF+ +L+EG
Sbjct: 71 DYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAKRFNTSKSLFACRLAEG 130
Query: 132 GPVGPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQL 191
PV PHV+KMIGY+E L +LGF L QEL DL+LQSLP S F+ NF MN+M++TL +L
Sbjct: 131 NPVSPHVIKMIGYNETLEKLGFPLSQELATDLILQSLPPSFEPFILNFNMNNMNRTLTKL 190
Query: 192 AAMLRTAEKNMKGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKPTGG 251
ML+TAE+++K ++ H +KPN K G
Sbjct: 191 PGMLKTAEESIKKNSNHVMVM---------HKRKPNNKKS-------------------G 222
Query: 252 VAKDDKCFYCNNAGHWK*NYPKYLED--KKNGNVPTTSAGIFVIEINMSTST--SWVLDT 307
AKD +CF+C AGHWK N KYLE +K + ++++GI VIEIN++TS+ SWV DT
Sbjct: 223 PAKDAECFFCKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDT 282
Query: 308 GCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLPSGLLLNLENCYYV 367
G +HIC +QGL++SR+LA+GEVD+RVGNGA+VAA+AVGT L+LPS L+L L N Y +
Sbjct: 283 GSVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCI 342
Query: 368 PAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYVLDLD-MPIYNINA 426
PA+ +N+IS SCL G+ F + CSVY ++I Y +A + +GLY+++L+ +YNINA
Sbjct: 343 PALCKNVISASCLQAEGYGFRSVDNDCSVYYNDIFYFHAPMMSGLYIVNLNGYSVYNINA 402
Query: 427 KRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRSCLLGKMTKAPFT 486
KR +PN+LNPT++WHCRLGHINE R+ K+H+DG L SFDFES+ETC SCLLGKMTKAPFT
Sbjct: 403 KRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFT 462
Query: 487 GQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLMKHKSESFTFFKE 546
GQ ERAS+LL L+HTDVCGP++ TARGGF YF T TDDFSR+GYVYLM+HKSESF FKE
Sbjct: 463 GQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKE 522
Query: 547 FQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTPQWNGVSERRNRT 606
F NEV+N LGK IK LRSDRGGEYLSLEF NHLKECGI+ QLTPPGTPQWNGVSE RNRT
Sbjct: 523 FHNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRT 582
Query: 607 LLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNGRKPNVGHFKIWG 666
LLDMVRSMMS L WGYAL T A+TLN VPSK+V+KTPYEIW G++P++ KIWG
Sbjct: 583 LLDMVRSMMSQTNLLLSFWGYALETTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWG 642
Query: 667 CEAYIKRLMSTKLEQKSEKCFFVGYPKETRGYYFYKPPEGTIVVAKTGVFLEKDFVSRRI 726
CE Y+KRL S KL KS+KCFFVGYPKET+GYYFY EG + VA+ GVFLEK+F+SR+
Sbjct: 643 CEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNQEEGKVFVARHGVFLEKEFISRKD 702
Query: 727 SGS 729
GS
Sbjct: 703 IGS 705
Score = 506 bits (1303), Expect = e-141
Identities = 249/323 (77%), Positives = 280/323 (86%)
Query: 850 KKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDYEIWQM 909
KKK D+DG V YKARLVAKGF+QI GVDYDETFSPVAM+K I I+LAIAAY DYEIWQM
Sbjct: 717 KKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKFIWIVLAIAAYFDYEIWQM 776
Query: 910 DVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDETVQQY 969
VKTAFLNGNL EDVYMTQP+GF DP++ KK+CKL +SIYGLKQASRSWN+RFDE V+
Sbjct: 777 YVKTAFLNGNLDEDVYMTQPKGFDDPQSAKKICKLHQSIYGLKQASRSWNIRFDEVVKAL 836
Query: 970 GFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGNDIPTLQEIKTWLRKCFSMKDLGEAS 1029
GF++NE+EPCVYKK+SGS + FLILYVDDILLIGNDI L+ +KT L+ FSMKDLGEA+
Sbjct: 837 GFVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLESVKTSLKNSFSMKDLGEAA 896
Query: 1030 YILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHESKKGFIPMSSGLNLSKTQSPSTDDE 1089
YILGIRIYRDRS+RL+GLSQ YIDKVL+RFNM +SKKGF+PMS G+NL K Q P T DE
Sbjct: 897 YILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDE 956
Query: 1090 RDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSRYQSNPGNEYWIAVKNILKYLRRTK 1149
R++M IPYASAIGSIMYAM+CTRPDVSYALSATSRYQS+PG +WIAVKNILKYLRRTK
Sbjct: 957 RNKMSVIPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTK 1016
Query: 1150 DTFLIYGG*EELSVIGYIDASFQ 1172
D FL YGG EEL V GY DASFQ
Sbjct: 1017 DMFLAYGGQEELVVNGYTDASFQ 1039
>gb|AAP52343.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531508|ref|NP_920056.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|21671887|gb|AAM74249.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 700
Score = 851 bits (2199), Expect = 0.0
Identities = 417/609 (68%), Positives = 491/609 (80%), Gaps = 9/609 (1%)
Query: 452 ISKLHKDGFLDSFDFESYETCRSCLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITA 511
+ KLH+DG L SFDFES+ETC SCLLGK+TKAPFTGQ ERAS+LL L+HTDVCGP++ TA
Sbjct: 1 MEKLHRDGLLHSFDFESFETCESCLLGKITKAPFTGQSERASELLRLVHTDVCGPMSSTA 60
Query: 512 RGGFHYFITLTDDFSRFGYVYLMKHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYL 571
RGGF YFI TDDFSR+GYVYLM+HKSESF FKEF NEV+N L K IK LRSDRGGEY
Sbjct: 61 RGGFGYFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYW 120
Query: 572 SLEFDNHLKECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLT 631
SLEF NHLKECGI+ QLTPPGTPQ NGVS+RRNRTLLDMVRSMMS +LP WGYAL T
Sbjct: 121 SLEFGNHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDLPLSFWGYALET 180
Query: 632 AAYTLNRVPSKAVEKTPYEIWNGRKPNVGHFKIWGCEAYIKRLMSTKL--EQKSEKCFFV 689
A +T+NRVPSK+++KTPYEIW G++P++ KIWGCE Y+KRL S KL + KS+KCFFV
Sbjct: 181 AVFTVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSKSDKCFFV 240
Query: 690 GYPKETRGYYFYKPPEGTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQ 749
GYPKET+GYYFY EG + VA+ GVFLEK F+SR+ SGS E + ST ++
Sbjct: 241 GYPKETKGYYFYNREEGKVFVARHGVFLEKKFISRKDSGSM----ETPENASTSTQPQQA 296
Query: 750 GQDT-QTVMTENPAPVTQEP--RRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAI 806
QD Q V PV + P RRS RIR+ P RY L + + D+LL+ DEP TY EA+
Sbjct: 297 EQDVVQQVEQVVVEPVVEAPASRRSERIRRTPARYALLTTGQCDILLLGNDEPTTYEEAM 356
Query: 807 TGPEFEKWLEAMKSEMDSMYTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARL 866
GP EKWL AMKS+++SM+ NQVWNL+D + + I CKWVFKKK D+DG V YKARL
Sbjct: 357 VGPGSEKWLGAMKSKIESMHVNQVWNLVDPLDSVKAIECKWVFKKKTDVDGNVHIYKARL 416
Query: 867 VAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYM 926
VAKGF+QI GV+YDETFSPVAM+KSIRI+LAIAAY DYEIWQMDVKTAFL+GNL EDVYM
Sbjct: 417 VAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYM 476
Query: 927 TQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSG 986
TQP+GF DP++ KK+CKLQ+SIYGLKQASRSWN+RFDE ++ GF+KNE+EPCVYKK++G
Sbjct: 477 TQPKGFVDPQSAKKICKLQKSIYGLKQASRSWNIRFDEVIKALGFVKNEEEPCVYKKING 536
Query: 987 SIVSFLILYVDDILLIGNDIPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLG 1046
S + FLILYVDDILLIGNDIP L+ +KT L+ FSMKDLGEA+YILGIRIYRDRS+RL+G
Sbjct: 537 SALMFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIG 596
Query: 1047 LSQGRYIDK 1055
LSQ YI+K
Sbjct: 597 LSQSTYINK 605
>ref|XP_462979.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|41393222|gb|AAS01945.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1084
Score = 773 bits (1997), Expect = 0.0
Identities = 398/733 (54%), Positives = 505/733 (68%), Gaps = 79/733 (10%)
Query: 7 ASTKILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAH 66
AS LRS+IEKEKLT TNF+DW H
Sbjct: 20 ASNFNLRSIIEKEKLTGTNFMDWE-----------------------------------H 44
Query: 67 AKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFST 126
K ND +++SC+MLA+M+P+LQ+Q+E + A +I L+ + E+QAR ER + SK+LF+
Sbjct: 45 EKRCNDYLDISCLMLATMSPKLQRQYEALDAHTIITGLRNMSEDQARAERSNTSKSLFAC 104
Query: 127 KLSEGGPVGPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDK 186
+L+EG PV PHV+KMIGY+E+L +LGF L +ELV DL+LQSLP S F+ NF MN++++
Sbjct: 105 RLAEGNPVSPHVIKMIGYTESLDKLGFPLNRELVTDLILQSLPPSFEPFIMNFNMNNLNR 164
Query: 187 TLPQLAAMLRTAEKNMKGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGK-----IVAKP 241
TL +L ML+TAE+++K ++ H +KPN K K K I +
Sbjct: 165 TLAELHGMLKTAEESIKKNSNHVMVM---------HKRKPNNKKSGQKRKLNSDEITSTS 215
Query: 242 STKALKPTGGVAKDDKCFYCNNAGHWK*NYPKYLED--KKNGNVPTTSAGIFVIEINMST 299
++K G AKD +CF+C GHWK NY KYLE +K + ++++GI VIEIN++T
Sbjct: 216 NSKTKVQKTGPAKDAECFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEINLAT 275
Query: 300 ST--SWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLPSGL 357
S+ SWV DT +HIC +QGL++SR+LA+GEVD+RVGNGA+VAA+AVGT L+LPSG+
Sbjct: 276 SSTDSWVFDTESVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGI 335
Query: 358 LLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYVLDL 417
+L L NCY + A+ +N+IS SCL G+ F + CSVY ++I Y + + NGLY+++L
Sbjct: 336 VLELNNCYCIRALCKNVISASCLQAEGYGFRSVDNGCSVYYNDIFYFHVPMMNGLYIVNL 395
Query: 418 D-MPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRSCL 476
D +YNINAKR PN LNPT++WHCRLGHINE R+ KLH+DG L SFDFES++T SCL
Sbjct: 396 DGCSVYNINAKRQCPNYLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCL 455
Query: 477 LGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLMKH 536
LGKMTK PFTGQ ERAS+LLGL+HTDVCGP++ TARGGF YFIT TDDFS++GYVYLM+H
Sbjct: 456 LGKMTKGPFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSKYGYVYLMRH 515
Query: 537 KSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTPQW 596
KSESF FKEFQNEV+N LGK IK LRSDRGGEYLSLEF NH KECGI+ QLTPPGTPQW
Sbjct: 516 KSESFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHRKECGIVPQLTPPGTPQW 575
Query: 597 NGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNGRK 656
N VSERRNRTLLDMVRSMMS LP GYAL T A+TLN VPSK+V+KTPYEIW G +
Sbjct: 576 NAVSERRNRTLLDMVRSMMSQTNLPLSFSGYALETTAFTLNWVPSKSVDKTPYEIWTGNR 635
Query: 657 PNVGHFKIWGCEAYIKRLMSTKLEQKSEKCFFVGYPKETRGYYFYKPPEGTIVVAKTGVF 716
P++ KIWG E ET+GYYFY EG + VA+ GVF
Sbjct: 636 PSLSFLKIWGYE-------------------------ETKGYYFYNREEGKVFVARHGVF 670
Query: 717 LEKDFVSRRISGS 729
LEK+F+SR+ SGS
Sbjct: 671 LEKEFISRKDSGS 683
Score = 511 bits (1315), Expect = e-143
Identities = 249/334 (74%), Positives = 285/334 (84%)
Query: 840 INPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIA 899
+ I CKW FKKK D+DG V YKARLVAKGF+QI GVDYDETF PVAM+KSIRI+LAIA
Sbjct: 701 LRAIECKWFFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIA 760
Query: 900 AYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWN 959
AY DYEIWQMDVKTAFLNGNL EDVYMTQP+GF DP++ KK+CKLQ+SIYGLKQASRSWN
Sbjct: 761 AYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWN 820
Query: 960 LRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGNDIPTLQEIKTWLRKC 1019
+RFDE V+ GF+KNE+ PCVYKK+SGS + FLILYVDDILLIGNDIP L+ + L+
Sbjct: 821 IRFDEVVKALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNS 880
Query: 1020 FSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHESKKGFIPMSSGLNLS 1079
FSMKDLGEA+YILGIRIYRD S+RL+GLS+ YIDKVL+ FNM +SKKGF+PMS G+NL+
Sbjct: 881 FSMKDLGEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLN 940
Query: 1080 KTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSRYQSNPGNEYWIAVK 1139
K Q T +E+++M IPYASAIGSIMYAM+CTRPDVSY LSATSRYQS+P +WIAVK
Sbjct: 941 KNQCLQTTNEQNKMSVIPYASAIGSIMYAMLCTRPDVSYVLSATSRYQSDPSESHWIAVK 1000
Query: 1140 NILKYLRRTKDTFLIYGG*EELSVIGYIDASFQT 1173
NILKYLRRTKD FL+YGG EEL V GY DASFQT
Sbjct: 1001 NILKYLRRTKDMFLVYGGQEELVVNGYTDASFQT 1034
>gb|AAR06328.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50901300|ref|XP_463083.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1063
Score = 707 bits (1824), Expect = 0.0
Identities = 349/610 (57%), Positives = 450/610 (73%), Gaps = 19/610 (3%)
Query: 12 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLN 71
LR ++EKEKLT TN +DW RN+RIVL E K +VL P P P A AA R H +
Sbjct: 103 LRYILEKEKLTRTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHERRCK 162
Query: 72 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 131
+ +++SC+MLA+M+PELQ+Q+E + A +I L+ ++E+QAR ERF+ SK+LF+ +L+EG
Sbjct: 163 EYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEG 222
Query: 132 GPVGPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQL 191
PV PHV+KMIGY+E+L +LGF L +EL DL+LQSLP S F+ NF MN++++TL +L
Sbjct: 223 NPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTLAEL 282
Query: 192 AAMLRTAEKNMKGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGK-----IVAKPSTKAL 246
ML+TAE+++K ++ H +KPN K K K I + ++K
Sbjct: 283 HGMLKTAEESIKKNSNHVMVM---------HKRKPNNKKSGQKRKLNSDEITSTSNSKTK 333
Query: 247 KPTGGVAKDDKCFYCNNAGHWK*NYPKYLED--KKNGNVPTTSAGIFVIEINMSTST--S 302
G AKD +CF+ GHWK N KYLE +K + ++++GI VIEIN++TS+ S
Sbjct: 334 VQKTGPAKDAECFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDS 393
Query: 303 WVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLPSGLLLNLE 362
WV DTG +HIC +QGL++SR+LA+G VD+RVGNG +VA +AVGT L+LPSGL+L L
Sbjct: 394 WVFDTGSVAHICKSLQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELN 453
Query: 363 NCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYVLDLD-MPI 421
NCY +PA+ +N+IS SCL G+ F + CSVY +++ Y +A + NGLY+++LD +
Sbjct: 454 NCYCIPALCKNVISASCLQAEGYGFRSMDNGCSVYYNDLFYFHAPMMNGLYIVNLDGCSV 513
Query: 422 YNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRSCLLGKMT 481
YNINAKR PN+LNPT++WHCRLGHINE R+ KLH+DG L SFDFES+ETC SCLLGKMT
Sbjct: 514 YNINAKRQHPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMT 573
Query: 482 KAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLMKHKSESF 541
KAPFTGQ +RAS+LLGL+HTDVCGP++ TARGGF YFIT TDDFSR GYVYLM+HKSES
Sbjct: 574 KAPFTGQSKRASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESV 633
Query: 542 TFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTPQWNGVSE 601
FK+FQNE +N LGK IK LRSDRGGEYLSLEF NHLKECGI+ QLTPPGTPQWNGVSE
Sbjct: 634 EKFKKFQNEEQNYLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSE 693
Query: 602 RRNRTLLDMV 611
RRNRTLLDM+
Sbjct: 694 RRNRTLLDML 703
Score = 506 bits (1304), Expect = e-141
Identities = 245/330 (74%), Positives = 285/330 (86%)
Query: 802 YTEAITGPEFEKWLEAMKSEMDSMYTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVST 861
+ A+ G + EK L AMKSE++SM+ NQVWNL+D P+G+ I CKWVFKKK D+DG V
Sbjct: 718 HLRAMVGLDSEKCLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKTDVDGNVHI 777
Query: 862 YKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLL 921
YKARLVAKGF+QI GVDYDETFSPVAM+KSIRI+LAIAAY DYEIWQM+VKTAFLNGN
Sbjct: 778 YKARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMEVKTAFLNGNHD 837
Query: 922 EDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVY 981
EDVYMTQP+GF D ++ K +CKLQ+SIYGLKQASRSWN+RFDE V+ GF+KNE+EPCVY
Sbjct: 838 EDVYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGFLKNEEEPCVY 897
Query: 982 KKVSGSIVSFLILYVDDILLIGNDIPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRS 1041
KK+SGS + FLILYVDDILLIGNDIP L+ +KT L+ FSMKDLGEA+YILGIRIYRDRS
Sbjct: 898 KKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYILGIRIYRDRS 957
Query: 1042 QRLLGLSQGRYIDKVLRRFNMHESKKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASA 1101
+RL+GLSQ YIDK+L+RFNM +SKKGF+PMS G+NL K Q P T DER++M IPYASA
Sbjct: 958 KRLIGLSQSTYIDKMLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVIPYASA 1017
Query: 1102 IGSIMYAMICTRPDVSYALSATSRYQSNPG 1131
IGSIMYAM+CTRPDVSYALSATSRYQS+PG
Sbjct: 1018 IGSIMYAMLCTRPDVSYALSATSRYQSDPG 1047
>emb|CAD40806.1| OSJNBb0076A22.18 [Oryza sativa (japonica cultivar-group)]
gi|50923613|ref|XP_472167.1| OSJNBb0076A22.18 [Oryza
sativa (japonica cultivar-group)]
Length = 1296
Score = 657 bits (1696), Expect = 0.0
Identities = 412/1096 (37%), Positives = 598/1096 (53%), Gaps = 91/1096 (8%)
Query: 99 DMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPVGPHVLKMIGYSENLARLGFVLEQE 158
+ +E +K+ + ++ + K L T+ GG V H+L++ + L + + +
Sbjct: 122 EYLERIKSQFTGSSKTYATQLIKQLV-TERYHGGGVRDHILRISNMASKLKPMDLGITDD 180
Query: 159 LVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAMLRTAEKNMKGKGKVAAILMVNNGK 218
+V LV+ SLP+ + F+ N+ ++ +L A E+ + + +I V + K
Sbjct: 181 FLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERIN-ESNGGSINYVKDKK 239
Query: 219 FKKHHKKPNKSKGNGKGKIVAKPSTKALKPTGGVAKDDKCFYCNNAGHWK*NYPKYLE-- 276
K+HK P SKG K S + + D+C +C GH+K + P +L+
Sbjct: 240 --KNHKSPT-SKG--------KQSQHLPQQQQFAVEKDQCLHCKKTGHYKRDCPDFLKMI 288
Query: 277 -DKKNGNVPTTSAGIFVIE---INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVD 332
KK N+ T FV E + S ST W+ D+G H C ++ R +R + E
Sbjct: 289 MAKKGENIIT-----FVNESHYVGYSRSTWWI-DSGATIHACNCLKAFRSTRTTQRREST 342
Query: 333 LRVGNGAKVAALAVGTYVLTLPSGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNK 392
+RV NG + AVG L L +G +L L + +YVP++ RN+IS+S LD G++ +
Sbjct: 343 IRVANGVEEKVEAVGDLPLELANGFILLLRDVFYVPSLQRNLISVSKLDFDGYDCRFGSG 402
Query: 393 CCSVYLDNILYANANLSNGLYVLDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRI 452
C ++ +N A L + LY+L L + N+ + K N+ + RI
Sbjct: 403 KCELWHNNACIGLAVLRDELYLLSLSENV-NVVSSLTKENKKR-------------KGRI 448
Query: 453 SKLHKDGFLDSFDFESYETCRSCLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITAR 512
+L K+ L F E C C+ GK K+ G +R++ +L +IHTD+CGP + +
Sbjct: 449 ERLVKNEILPPLGFS--EQCIECIKGKFVKSIKKG-AKRSAGILEIIHTDICGPFPVKSV 505
Query: 513 GGFHYFITLTDDFSRFGYVYLMKHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLS 572
G+ FIT TDD+SR+GY+Y +K +SE+ FK F+ EVENQ KIK++RS+RGGEY
Sbjct: 506 DGYDSFITFTDDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDIKIKVVRSNRGGEYYG 565
Query: 573 LE---------FDNHLKECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHAELPNF 623
F L E GI++Q + PG PQ NGV+ERRNRTL+DMVRS+MS++ LP
Sbjct: 566 RHTPYGQVPGPFARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSIMSYSTLPLG 625
Query: 624 LWGYALLTAAYTLNRVPSKAVEKTPYEIWNGRKPNVGHFKIWGC--EAYIKRLMSTKLEQ 681
LW AL TA + LNRVPSK+V KTPYE+W GR P++ H ++WG EA + KL+
Sbjct: 626 LWMEALKTAIHILNRVPSKSVPKTPYELWIGRVPSLTHLRVWGSPTEAKVFNPNIGKLDP 685
Query: 682 KSEKCFFVGYPKETRGYYFYKPPEGT-IVVAKTGVFLEKDFVSRRISGSKVDLKEIQ--- 737
K+ C F+GYP+ ++GY FY P T V + VFLE + + ++DL+E +
Sbjct: 686 KTVSCHFIGYPERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSV 745
Query: 738 DPQSTEIPVEEQGQDTQTVMT--ENPAPVTQEPRRSSRIRQEPERYGYLISQEGDVLLMD 795
ST+ P D M E P PV P + +EP +
Sbjct: 746 PAPSTQEPFFSLPADVVPAMPVIEVPTPVVTPPVATMNESEEP---------------VI 790
Query: 796 QDEPVTYTEAITGPEFEKWLEAMKSEMDSMYTNQVWNLIDAPEGINPIGCKWVFKKKIDM 855
QD TE + PE E+ + + T+Q + D P P
Sbjct: 791 QDS----TEMVATPE-EELQQPQIDNVPVQETHQEPQVQDVPNVQAP------------R 833
Query: 856 DGKVSTYKARLVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAF 915
G + +KARLVAKGF Q G+DY+ETFSPV+ S RI++A+ A++D E+ Q+DVKTAF
Sbjct: 834 RGNIEKFKARLVAKGFTQREGIDYNETFSPVSCKDSFRIIMALVAHYDLELHQLDVKTAF 893
Query: 916 LNGNLLEDVYMTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDETVQQYGFIKNE 975
LNG+L E VYM QP+GF C+L+RSIYGLKQASR W L+FD T++++GF +N
Sbjct: 894 LNGDLEEKVYMAQPKGFVMKGNENMGCRLKRSIYGLKQASRQWYLKFDGTIKKFGFQENV 953
Query: 976 DEPCVYKKVSGSIVSFLILYVDDILLIGNDIPTLQEIKTWLRKCFSMKDLGEASYILGIR 1035
++ C+Y K FLILYVDDILL +D+ LQE K +L F MKDLGEASY+LGI
Sbjct: 954 EDNCIYSKFKNGRFIFLILYVDDILLASSDVSLLQETKKFLSSNFDMKDLGEASYVLGIE 1013
Query: 1036 IYRDRSQRLLGLSQGRYIDKVLRRFNMHESKKGFIPMSSGLNLSKTQSPSTDDERDRMRD 1095
I+RDR++ LGLSQ YI+KVL++FNM+ P+ G +Q P E + M+
Sbjct: 1014 IHRDRTKYALGLSQKTYIEKVLKKFNMYRCSATPAPIMKGEKYGASQCPRNQYELNEMKT 1073
Query: 1096 IPYASAIGSIMYAMICTRPDVSYALSATSRYQSNPGNEYWIAVKNILKYLRRTKDTFLIY 1155
PYASA+GS+ YA +CTRPD+++ R+QSNPG E+W VK +L+YL+ TK L Y
Sbjct: 1074 KPYASAVGSLQYAQVCTRPDLAFVTGLLGRFQSNPGLEHWKLVKKVLRYLQGTKGLMLSY 1133
Query: 1156 GG*EELSVIGYIDASF 1171
E L ++GY D+ F
Sbjct: 1134 KRSESLQIVGYSDSDF 1149
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 645 bits (1665), Expect = 0.0
Identities = 418/1205 (34%), Positives = 631/1205 (51%), Gaps = 95/1205 (7%)
Query: 23 ETNFIDWSRNMRIVLTHE--KKLYVLDGPIPETPPAGASAALRNAHAK----HLNDSVEV 76
+ F W R MR +L + K+ +D P+T A A L A HL+D V
Sbjct: 14 DNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVN 73
Query: 77 SCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPVGP 136
+ I + TA + L++LY + + + K L++ +SEG
Sbjct: 74 NII-------------DEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 137 HVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAMLR 196
H+ G LA LG +E+E L+L SLP S + L L + + L
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALL 180
Query: 197 TAEKNMKGKGKVAAILMVNNGKFKKHHKKPN---KSKGNGKGKIVAKPSTKALKPTGGVA 253
EK M+ K + ++ G+ + + + N +S GK K +K +
Sbjct: 181 LNEK-MRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVR--------- 230
Query: 254 KDDKCFYCNNAGHWK*NYPKYLEDKKNG----NVPTTSAGI-----FVIEIN-------- 296
C+ CN GH+K + P + K N T+A + V+ IN
Sbjct: 231 ---NCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHL 287
Query: 297 MSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLPSG 356
+ WV+DT SH T V+ L R +A +++GN + +G + G
Sbjct: 288 SGPESEWVVDTAA-SHHATPVRDLF-CRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVG 345
Query: 357 LLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYVLD 416
L L++ +VP + N+IS LD+ G+E N+ + +++ A LY +
Sbjct: 346 CTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTN 405
Query: 417 LDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRSCL 476
++ +NA + +E++ LWH R+GH++E + L K + + + C CL
Sbjct: 406 AEICQGELNAAQ---DEISVD-LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCL 461
Query: 477 LGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLMKH 536
GK + F ER ++L L+++DVCGP+ I + GG YF+T DD SR +VY++K
Sbjct: 462 FGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKT 521
Query: 537 KSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTPQW 596
K + F F++F VE + G+K+K LRSD GGEY S EF+ + GI + T PGTPQ
Sbjct: 522 KDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQH 581
Query: 597 NGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVE-KTPYEIWNGR 655
NGV+ER NRT+++ VRSM+ A+LP WG A+ TA Y +NR PS + + P +W +
Sbjct: 582 NGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNK 641
Query: 656 KPNVGHFKIWGCEAY--IKRLMSTKLEQKSEKCFFVGYPKETRGYYFYKPPEGTIVVAKT 713
+ + H K++GC A+ + + TKL+ KS C F+GY E GY + P + ++ ++
Sbjct: 642 EVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRD 701
Query: 714 GVFLEKDFVSRRISGSKVDLKEIQD-------------PQSTEIPVEEQGQDTQTVM--- 757
VF E + + KV I + +ST V EQG+ V+
Sbjct: 702 VVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQG 761
Query: 758 ---------TENPAPVTQEP---RRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEA 805
E+P ++ RRS R R E RY VL+ D EP + E
Sbjct: 762 EQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRY----PSTEYVLISDDREPESLKEV 817
Query: 806 ITGPEFEKWLEAMKSEMDSMYTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKAR 865
++ PE + ++AM+ EM+S+ N + L++ P+G P+ CKWVFK K D D K+ YKAR
Sbjct: 818 LSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKAR 877
Query: 866 LVAKGFKQIHGVDYDETFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVY 925
LV KGF+Q G+D+DE FSPV + SIR +L++AA D E+ Q+DVKTAFL+G+L E++Y
Sbjct: 878 LVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIY 937
Query: 926 MTQPEGFGDPKATKKVCKLQRSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVY-KKV 984
M QPEGF VCKL +S+YGLKQA R W ++FD ++ ++K +PCVY K+
Sbjct: 938 MEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRF 997
Query: 985 SGSIVSFLILYVDDILLIGNDIPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRL 1044
S + L+LYVDD+L++G D + ++K L K F MKDLG A ILG++I R+R+ R
Sbjct: 998 SENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRK 1057
Query: 1045 LGLSQGRYIDKVLRRFNMHESKKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGS 1104
L LSQ +YI++VL RFNM +K P++ L LSK P+T +E+ M +PY+SA+GS
Sbjct: 1058 LWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGS 1117
Query: 1105 IMYAMICTRPDVSYALSATSRYQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVI 1164
+MYAM+CTRPD+++A+ SR+ NPG E+W AVK IL+YLR T L +GG + + +
Sbjct: 1118 LMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LK 1176
Query: 1165 GYIDA 1169
GY DA
Sbjct: 1177 GYTDA 1181
>pir||T02206 hypothetical protein - common tobacco retrotransposon Tto1
gi|1167523|dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana
tabacum]
Length = 1338
Score = 639 bits (1649), Expect = 0.0
Identities = 403/1129 (35%), Positives = 605/1129 (52%), Gaps = 91/1129 (8%)
Query: 102 EHLKTLYEEQARHERFDVSKALFSTKLSEGGPVGPHVLKMIGYSENLARLGFVLEQELVV 161
+ L+ LY + + + L K EG V H+ ++ G + L+ +G + E++
Sbjct: 84 DKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQGIVDQLSGMGIKFDDEVLA 143
Query: 162 DLVLQSLPES---LNGFVHNFLMNDMDKTLPQLAAMLRTAEKNMKGKGKVAA---ILMVN 215
+VL +LPES L + N N + + + + + E + +G ++ +L V
Sbjct: 144 LMVLATLPESWETLKVSITNSAPNGV-VNMETVKSGILNEEMRRRSQGTSSSQSEVLAVT 202
Query: 216 NGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKPTGGVAKDDKCFYCNNAGH--------- 266
++ + N+ K GK A +C YC GH
Sbjct: 203 TRGRSQNKSQSNRDKSRGKSNKFANV---------------ECHYCKKKGHIKRFCRQFQ 247
Query: 267 --WK*NYPKYLEDKKNGNVPTTSAGIFVIE-----INMSTST-SWVLDTGCGSHICTDVQ 318
K N K ++ +++ + T S G F + IN++T +WV+D+G H T +
Sbjct: 248 NDQKKNKGKKVKPEESSDDETNSFGEFNVVYDDDIINLTTQEMTWVIDSGATIH-ATPRR 306
Query: 319 GLRKSRALAK-GEVDLRVGNGAKVAALAVGTYVLTLPSGLLLNLENCYYVPAISRNIISI 377
L S L G V ++GN + G L +G+ L L + +VP + N+IS+
Sbjct: 307 ELFSSYTLGDFGRV--KMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISV 364
Query: 378 SCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYVLDLDMPIYNINAKRLKPNELNPT 437
LD+ G+ T N + +++ A + LYV + IN N
Sbjct: 365 DKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLYVTQASISQQVINVAENDSN----I 420
Query: 438 YLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRSCLLGKMTKAPFTG-QGERASDLL 496
LWH RLGH++E +++L K L + + C CL GK + F R ++L
Sbjct: 421 KLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRRQNVL 480
Query: 497 GLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLMKHKSESFTFFKEFQNEVENQLG 556
L+H+DVCGP + GG YF+T DD SR +VY +K K + F FK+F VE + G
Sbjct: 481 DLVHSDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETG 539
Query: 557 KKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMS 616
KK+K +R+D GGEY +FD + KE GI Q TPP TPQ NG++ER NRTL++ R ++S
Sbjct: 540 KKLKCIRTDNGGEYQG-QFDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTLIERTRCLLS 598
Query: 617 HAELPNFLWGYALLTAAYTLNRVPSKAVE-KTPYEIWNGRKPNVGHFKIWGCEAYIK--R 673
H++LP WG AL+TAAY LN P ++ K P +IW GR + +++GC+AY+ +
Sbjct: 599 HSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCKAYVHVPK 658
Query: 674 LMSTKLEQKSEKCFFVGYPKETRGYYFYKPPEGTIVVAKTGVFLEKDFVSR--RISGSKV 731
+KL+ K+ +C F+GY ++ GY FY P E +V ++ VF+E + ++ S
Sbjct: 659 DERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDKVEKSTD 718
Query: 732 DLKE---------------IQD--PQSTEIPVEEQ----------GQDTQTVMTENPAPV 764
D E +QD P++ +P E++ G D + P+
Sbjct: 719 DSAEFELPPTVVPRQVGDDVQDNQPEAPGLPNEDELADTEGNEDNGDDDADEEDQPQPPI 778
Query: 765 TQEP---RRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSE 821
P RS R+ Q+ RY S VLL D EP ++ EAI EKW+EAM+ E
Sbjct: 779 LNNPPYHTRSGRVVQQSTRY----SPHEYVLLTDGGEPDSFEEAIDDEHKEKWIEAMQDE 834
Query: 822 MDSMYTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDE 881
+ S++ N+ + L+ P+G + KWVFK K D + +KARLV KGF Q G+D+DE
Sbjct: 835 IKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDE 894
Query: 882 TFSPVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKV 941
FSPV + SIR +L +AA + E+ QMDVKTAFL+G+L E++YM QP+GF V
Sbjct: 895 IFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGKEDYV 954
Query: 942 CKLQRSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVY-KKVSGSIVSFLILYVDDIL 1000
C+L++S+YGLKQA R W +F+ + Q+G+ K + CV+ +K S L+LYVDD+L
Sbjct: 955 CRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDML 1014
Query: 1001 LIGNDIPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRF 1060
++G ++ + +K L K F+MKDLG A ILG+RI RDR + L LSQ +YI+KVL+RF
Sbjct: 1015 IVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRF 1074
Query: 1061 NMHESKKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYAL 1120
NM ++K P+++ LS QSPSTDDER +M IPYASA+GS+MYAM+CTRPD+++A+
Sbjct: 1075 NMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAV 1134
Query: 1121 SATSRYQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDA 1169
SR+ SNPG E+W AVK IL+YLR T L +G + ++GY DA
Sbjct: 1135 GVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGE-DNPVLVGYTDA 1182
>ref|XP_493793.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 634 bits (1636), Expect = e-180
Identities = 411/1187 (34%), Positives = 622/1187 (51%), Gaps = 72/1187 (6%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGNRLVEVYMHMTDAKELWDALNTKFGATDGSNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+T DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ ++TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIYEMTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRI-SGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPV 764
GTI+ ++ +F E F + SGS + I P S P EQ + T +++E V
Sbjct: 709 GTIMESRDAIFFESFFPMKDTHSGSNQPFEII--PSSITPP--EQTEHTHELVSEED--V 762
Query: 765 TQEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDS 824
++ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS
Sbjct: 763 SEAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDS 816
Query: 825 MYTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFS 884
+ N W +I+ P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+S
Sbjct: 817 IIANGTWEVIERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYS 876
Query: 885 PVAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKL 944
PVA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF +KVCKL
Sbjct: 877 PVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQERKVCKL 936
Query: 945 QRSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGN 1004
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G
Sbjct: 937 LKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGT 996
Query: 1005 DIPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHE 1064
++ + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +
Sbjct: 997 NLEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYID 1054
Query: 1065 SKKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATS 1124
SK P L L K ++R + Y+ IGS+MY TRPD+S+A+S S
Sbjct: 1055 SKPSPTPYDPSLLLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLS 1107
Query: 1125 RYQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
R+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1108 RFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAV-LEGYSDSNW 1153
>ref|NP_918918.1| putative retrovirus-related pol polyprotein from transposon TNT 1-94
[Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 634 bits (1634), Expect = e-180
Identities = 411/1186 (34%), Positives = 618/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIL-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+TL DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI P S P EQ + T +++E V+
Sbjct: 709 GTIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPP--EQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRNGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
I + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +S
Sbjct: 998 IEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P S L+L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDSSLSLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAV-LEGYSDSNW 1153
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|50900582|ref|XP_462724.1| putative
Gag and Pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|34913798|ref|NP_918246.1| putative
polyprotein from transposon TNT 1-94 [Oryza sativa
(japonica cultivar-group)]
Length = 1302
Score = 632 bits (1631), Expect = e-179
Identities = 410/1186 (34%), Positives = 617/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+TL DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI P S P EQ + T +++E V+
Sbjct: 709 GTIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPP--EQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
I + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +S
Sbjct: 998 IEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P L+L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDPSLSLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAV-LEGYSDSNW 1153
>ref|NP_918597.1| putative retrovirus-related pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1302
Score = 632 bits (1631), Expect = e-179
Identities = 410/1186 (34%), Positives = 617/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+TL DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI P S P EQ + T +++E V+
Sbjct: 709 GTIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPP--EQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
I + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +S
Sbjct: 998 IEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P L+L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDPSLSLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAV-LEGYSDSNW 1153
>ref|NP_918288.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|62734723|gb|AAX96832.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1320
Score = 632 bits (1631), Expect = e-179
Identities = 410/1186 (34%), Positives = 617/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+TL DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI P S P EQ + T +++E V+
Sbjct: 709 GTIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPP--EQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
I + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +S
Sbjct: 998 IEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P L+L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDPSLSLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAV-LEGYSDSNW 1153
>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa (japonica cultivar-group)]
gi|50921919|ref|XP_471320.1| OSJNBb0018J12.5 [Oryza
sativa (japonica cultivar-group)]
Length = 1320
Score = 632 bits (1631), Expect = e-179
Identities = 409/1186 (34%), Positives = 614/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQIGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+T DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFYKPPE------- 705
RKP++ + +IWGC A + ++ K L K+ C F+GY + Y F
Sbjct: 649 RKPSLSYLRIWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI P S P EQ + T +++E V+
Sbjct: 709 GTIIESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPP--EQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
+ + E+K++L K F MKDLG A IL I++ R ++ + L Q Y++K+L RF +S
Sbjct: 998 LEVINEVKSFLSKNFDMKDLGVADVILNIKLIRGENE--ITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P L L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDPSLLLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAV-LEGYSDSNW 1153
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa (japonica cultivar-group)]
gi|50918819|ref|XP_469806.1| putative gag and pol protein
[Oryza sativa (japonica cultivar-group)]
Length = 1302
Score = 632 bits (1629), Expect = e-179
Identities = 409/1186 (34%), Positives = 617/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+TL DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI P S P EQ + T +++E V+
Sbjct: 709 GTIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPP--EQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
+ + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +S
Sbjct: 998 LEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P L+L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDPSLSLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAV-LEGYSDSNW 1153
>ref|XP_468569.1| Putative polyprotein from transposon TNT [Oryza sativa (japonica
cultivar-group)] gi|24431600|gb|AAN61480.1| Putative
polyprotein from transposon TNT [Oryza sativa (japonica
cultivar-group)]
Length = 1911
Score = 631 bits (1628), Expect = e-179
Identities = 410/1186 (34%), Positives = 617/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+TL DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI P S P EQ + T +++E V+
Sbjct: 709 GTIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPP--EQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLTFAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
I + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +S
Sbjct: 998 IEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P L+L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDPSLSLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAV-LEGYSDSNW 1153
>ref|XP_475999.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|47777367|gb|AAT38001.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1297
Score = 631 bits (1627), Expect = e-179
Identities = 409/1186 (34%), Positives = 615/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTSMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAWEKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFVIEI------------ 295
+D++ CF C GH P+ K + SA + + I
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNIGDGSGYGNLPTV 291
Query: 296 -NMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + T +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDETNVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K P ER L L+H+D+C + +GG YF+TL DD +RF YVYL+
Sbjct: 469 CVQSKQPHKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEIPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI T EQ + T +++E V+
Sbjct: 709 GTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSLITP---PEQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
+ + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +S
Sbjct: 998 LEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P L L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDHSLLLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTVELGLHYTG-YPVVLEGYSDSNW 1153
>gb|AAU10767.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|50511444|gb|AAT77367.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1320
Score = 631 bits (1627), Expect = e-179
Identities = 409/1186 (34%), Positives = 616/1186 (51%), Gaps = 70/1186 (5%)
Query: 16 IEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPETPPAGASAALRNAHAKHLNDSVE 75
+ +K T +F W + + LT K +V G P G A + + ++
Sbjct: 8 LRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGK-----PEGVLTAEQQKQFEEAT-TLF 61
Query: 76 VSCIMLASMTPELQKQHEGMT-AFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEGGPV 134
V CI L+ + L + + MT A ++ + L T + + + K+++ V
Sbjct: 62 VGCI-LSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120
Query: 135 GPHVLKMIGYSENLARLGFVLEQELVVDLVLQSLPESLNGFVHNFLMNDMDKTLPQLAAM 194
++ ++ L L VL + V ++ LP S F + ++ L A
Sbjct: 121 VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180
Query: 195 LRTAEKNM------KGKGKVAAILMVNNGKFKKHHKKPNKSKGNGKGKIVAKPSTKALKP 248
L EK KG G ++ +V HK NKSKG K + K K
Sbjct: 181 LDVEEKAREKDAASKGDGGQSSANVV--------HKAQNKSKGKYKAQQTTN-FKKQKKN 231
Query: 249 TGGVAKDDK-CFYCNNAGHWK*NYPKYLEDKKNGNVPTTSAGIFV-------------IE 294
+D++ CF C GH P+ K + SA + +
Sbjct: 232 NNNPNQDERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGNLPTV 291
Query: 295 INMSTSTSWVLDTGCGSHICTDVQGLRKSRALAKGEVDLRVGNGAKVAALAVGTYVLTLP 354
+++ ST+W +DTG H+C D+ L S +A+G L +GNG+ + VGT L
Sbjct: 292 FSVNQSTNWWVDTGANVHVCADIS-LFSSYQVARGSTVL-MGNGSHASVHGVGTVDLKFT 349
Query: 355 SGLLLNLENCYYVPAISRNIISISCLDKAGFEFTIKNKCCSVYLDNILYANANLSNGLYV 414
SG ++ L+N +VP+I RN++S S L + GF+ ++ V GL+
Sbjct: 350 SGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGLFR 409
Query: 415 LDLDMPIYNINAKRLKPNELNPTYLWHCRLGHINENRISKLHKDGFLDSFDFESYETCRS 474
L N + + + + +WH RL HIN +S+L + F C S
Sbjct: 410 FSLS-DFCNKSVNHICGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHS 468
Query: 475 CLLGKMTKAPFTGQGERASDLLGLIHTDVCGPLNITARGGFHYFITLTDDFSRFGYVYLM 534
C+ K + P ER L L+H+D+C + +GG YF+TL DD +RF YVYL+
Sbjct: 469 CVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLL 528
Query: 535 KHKSESFTFFKEFQNEVENQLGKKIKMLRSDRGGEYLSLEFDNHLKECGILSQLTPPGTP 594
K K E+ +FK ++ EVENQL +KIK LRSDRGGE+ S EFD +E GI+ + TPP +P
Sbjct: 529 KTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSP 588
Query: 595 QWNGVSERRNRTLLDMVRSMMSHAELPNFLWGYALLTAAYTLNRVPSKAVEKTPYEIWNG 654
+ NG++ER+NRTL D+V +M+ A LP WG ALLT+ + LNRVP++ +KTPYEIW G
Sbjct: 589 ESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIG 648
Query: 655 RKPNVGHFKIWGCEAYIKRLMSTK--LEQKSEKCFFVGYPKETRGYYFY----KPPE--- 705
RKP++ + + WGC A + ++ K L K+ C F+GY + Y F + P+
Sbjct: 649 RKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHV 708
Query: 706 GTIVVAKTGVFLEKDFVSRRISGSKVDLKEIQDPQSTEIPVEEQGQDTQTVMTENPAPVT 765
GTI+ ++ F E F + EI P S P EQ + T +++E V+
Sbjct: 709 GTIMESRDATFFESFFPMKDTHSGSNQPSEII-PSSITPP--EQTEHTHELVSEED--VS 763
Query: 766 QEPRRSSRIRQEPERYGYLISQEGDVLLMDQDEPVTYTEAITGPEFEKWLEAMKSEMDSM 825
+ PRRS R +R + V L+D D P + +EA P+ + W EA++SEMDS+
Sbjct: 764 EAPRRSKR-----QRTAKSFGDDFTVYLVD-DTPKSISEAYASPDADYWKEAVRSEMDSI 817
Query: 826 YTNQVWNLIDAPEGINPIGCKWVFKKKIDMDGKVSTYKARLVAKGFKQIHGVDYDETFSP 885
N W + + P G P+GCKWVFKKK+ DG + YKARLVAKG+ Q G D+ +T+SP
Sbjct: 818 IANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSP 877
Query: 886 VAMIKSIRILLAIAAYHDYEIWQMDVKTAFLNGNLLEDVYMTQPEGFGDPKATKKVCKLQ 945
VA + +IR+LL++AA H + QMDVKTAFLNG L E++YM QP+GF KVCKL
Sbjct: 878 VARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLL 937
Query: 946 RSIYGLKQASRSWNLRFDETVQQYGFIKNEDEPCVYKKVSGSIVSFLILYVDDILLIGND 1005
+S+YGLKQA + W+ +FD+T+ GF NE + CVY + G L LYVDDIL+ G +
Sbjct: 938 KSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTN 997
Query: 1006 IPTLQEIKTWLRKCFSMKDLGEASYILGIRIYRDRSQRLLGLSQGRYIDKVLRRFNMHES 1065
+ + E+K++L + F MKDLG A IL I++ R + + L Q Y++K+L RF +S
Sbjct: 998 LEVINEVKSFLSQNFDMKDLGVADVILNIKLI--RGENGITLLQSHYVEKILNRFGYIDS 1055
Query: 1066 KKGFIPMSSGLNLSKTQSPSTDDERDRMRDIPYASAIGSIMYAMICTRPDVSYALSATSR 1125
K P L L K ++R + Y+ IGS+MY TRPD+S+A+S SR
Sbjct: 1056 KPSPTPYDPSLLLRK-------NKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSR 1108
Query: 1126 YQSNPGNEYWIAVKNILKYLRRTKDTFLIYGG*EELSVIGYIDASF 1171
+ SNPG+++W A++ +++YL+ T + L Y G + + GY D+++
Sbjct: 1109 FTSNPGDDHWRALERVMRYLKGTMELGLHYTGYPAV-LEGYSDSNW 1153
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,045,995,994
Number of Sequences: 2540612
Number of extensions: 90869622
Number of successful extensions: 216922
Number of sequences better than 10.0: 2641
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 939
Number of HSP's that attempted gapping in prelim test: 208869
Number of HSP's gapped (non-prelim): 4453
length of query: 1173
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1034
effective length of database: 510,215,326
effective search space: 527562647084
effective search space used: 527562647084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)
Medicago: description of AC149496.11