BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149491.7 - phase: 0
(114 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAS88753.1| At3g16980 [Arabidopsis thaliana] gi|45752612|gb|A... 229 2e-59
gb|AAM61507.1| RNA Polymerase II subunit 14.5 kD, putative [Arab... 228 2e-59
ref|XP_479163.1| putative RNA Polymerase II subunit 14.5 kD [Ory... 162 2e-39
ref|XP_214895.2| PREDICTED: similar to DNA-directed RNA polymera... 156 1e-37
gb|AAH90238.1| Unknown (protein for MGC:85139) [Xenopus laevis] 154 4e-37
ref|XP_423952.1| PREDICTED: similar to DNA-directed RNA polymera... 154 5e-37
emb|CAG02857.1| unnamed protein product [Tetraodon nigroviridis] 153 8e-37
gb|AAH83411.1| Zgc:103515 [Danio rerio] gi|54400528|ref|NP_00100... 152 1e-36
gb|AAF55045.1| CG3284-PA [Drosophila melanogaster] gi|24646802|r... 152 2e-36
gb|EAL27791.1| GA17176-PA [Drosophila pseudoobscura] 152 2e-36
ref|XP_317057.2| ENSANGP00000019703 [Anopheles gambiae str. PEST... 150 9e-36
gb|AAB29028.2| RNA polymerase II subunit 9 [Drosophila melanogas... 149 2e-35
ref|XP_396002.1| PREDICTED: similar to ENSANGP00000019703 [Apis ... 149 2e-35
gb|AAB21674.1| RNA polymerase II 15-kda subunit [Drosophila mela... 147 8e-35
ref|XP_533686.1| PREDICTED: similar to DNA-directed RNA polymera... 139 2e-32
gb|AAK85514.1| Hypothetical protein Y97E10AR.5 [Caenorhabditis e... 136 1e-31
ref|XP_647216.1| RNA polymerase II core subunit [Dictyostelium d... 131 3e-30
gb|AAW27034.1| unknown [Schistosoma japonicum] 128 3e-29
emb|CAE66160.1| Hypothetical protein CBG11394 [Caenorhabditis br... 126 1e-28
gb|AAS55920.1| DNA-directed RNA polymerase II [Sus scrofa] 124 7e-28
>gb|AAS88753.1| At3g16980 [Arabidopsis thaliana] gi|45752612|gb|AAS76204.1|
At3g16980 [Arabidopsis thaliana]
gi|15228929|ref|NP_188323.1| DNA-directed RNA polymerase
II, putative [Arabidopsis thaliana]
Length = 114
Score = 229 bits (583), Expect = 2e-59
Identities = 101/114 (88%), Positives = 108/114 (94%)
Query: 1 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
MSTMKFCRECNNILYPKED+EQKILLYACRNCDHQE ADN CVYRNE+HHSV+ERTQ+L
Sbjct: 1 MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60
Query: 61 DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114
DVA+DPTLPRTKAVRC +C H EAVFFQATARGEEGMTLFFVCCNPNCGHRWR+
Sbjct: 61 DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114
>gb|AAM61507.1| RNA Polymerase II subunit 14.5 kD, putative [Arabidopsis thaliana]
gi|18414627|ref|NP_567490.1| DNA-directed RNA polymerase
II, putative [Arabidopsis thaliana]
Length = 114
Score = 228 bits (582), Expect = 2e-59
Identities = 100/114 (87%), Positives = 108/114 (94%)
Query: 1 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
MSTMKFCRECNNILYPKED+EQ ILLYACRNCDHQEAADN CVYRNE+HHSV+E+TQ+L
Sbjct: 1 MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60
Query: 61 DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114
DVA+DPTLPRTKAVRC +C HGEAVFFQATARGEEGMTLFFVCCNPNC HRWR+
Sbjct: 61 DVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCSHRWRE 114
>ref|XP_479163.1| putative RNA Polymerase II subunit 14.5 kD [Oryza sativa (japonica
cultivar-group)] gi|23237936|dbj|BAC16509.1| putative
RNA Polymerase II subunit 14.5 kD [Oryza sativa
(japonica cultivar-group)] gi|24060023|dbj|BAC21480.1|
putative RNA Polymerase II subunit 14.5 kD [Oryza sativa
(japonica cultivar-group)]
Length = 116
Score = 162 bits (409), Expect = 2e-39
Identities = 64/114 (56%), Positives = 86/114 (75%)
Query: 1 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60
MS +KFC EC+N+LYP+ED+E LLYAC +C+HQE A + CVY+ + E +L+
Sbjct: 3 MSALKFCGECSNMLYPREDKETHTLLYACNSCEHQEPATDTCVYKRVLRKPAGEPKDILK 62
Query: 61 DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114
D A DPTLPRT++++C C H EA FFQA +GE+G+TL+F+CCNP+CGHRWRD
Sbjct: 63 DAATDPTLPRTRSIKCYNCGHPEAAFFQAPTKGEKGLTLYFICCNPSCGHRWRD 116
>ref|XP_214895.2| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa
polypeptide (RPB9) (RPB14.5) [Rattus norvegicus]
gi|38541317|gb|AAH62812.1| Polr2i protein [Mus musculus]
gi|397150|emb|CAA80649.1| RNA Polymerase II subunit 14.5
kD [Homo sapiens] gi|24528347|emb|CAD56045.1| RNA
polymerase II polypeptide I, 14.5kDa [Sus scrofa]
gi|1905901|gb|AAB51181.1| HUMAN DNA-DIRECTED RNA
POLYMERASE II 14.5 KD SUBUNIT [Homo sapiens]
gi|45709621|gb|AAH67794.1| DNA directed RNA polymerase
II polypeptide I [Homo sapiens]
gi|16877749|gb|AAH17112.1| DNA directed RNA polymerase
II polypeptide I [Homo sapiens]
gi|46396569|sp|P60899|RPB9_PIG DNA-directed RNA
polymerase II 14.5 kDa polypeptide (RPB9) (RPB14.5)
gi|46396717|sp|P60898|RPB9_MOUSE DNA-directed RNA
polymerase II 14.5 kDa polypeptide (RPB9) (RPB14.5)
gi|548702|sp|P36954|RPB9_HUMAN DNA-directed RNA
polymerase II 14.5 kDa polypeptide (RPB9) (RPB14.5)
gi|28477935|ref|XP_133304.3| PREDICTED: polymerase (RNA)
II (DNA directed) polypeptide I [Mus musculus]
gi|5453930|ref|NP_006224.1| DNA directed RNA polymerase
II polypeptide I [Homo sapiens]
Length = 125
Score = 156 bits (395), Expect = 1e-37
Identities = 67/112 (59%), Positives = 89/112 (78%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E +ILLYACRNCD+Q+ ADN C+Y N+I H V E TQ++ DV+
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
DPTLPRT+ C +C H EAVFFQ+ +AR E+ M L++VC P+CGHRW +
Sbjct: 74 QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>gb|AAH90238.1| Unknown (protein for MGC:85139) [Xenopus laevis]
Length = 125
Score = 154 bits (390), Expect = 4e-37
Identities = 65/112 (58%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E +ILLYACRNCD+Q+ ADN C+Y N+I H + E TQ++ DVA
Sbjct: 14 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEIDELTQIIADVA 73
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
+PTLPRT+ C +C H EAVFFQ+ +A+ E+ M L++VC P+CGHRW +
Sbjct: 74 QEPTLPRTEDHPCSKCGHKEAVFFQSHSAKSEDAMRLYYVCTAPHCGHRWTE 125
>ref|XP_423952.1| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa
polypeptide (RPB9) (RPB14.5) [Gallus gallus]
Length = 203
Score = 154 bits (389), Expect = 5e-37
Identities = 65/112 (58%), Positives = 89/112 (79%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E ++LLYACRNCD+Q+ AD+ C+Y N+I H V E TQ++ DV+
Sbjct: 92 IRFCQECNNMLYPKEDKESRVLLYACRNCDYQQEADSSCIYVNKITHEVDELTQIIADVS 151
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
DPTLPRT+ C +C H EAVFFQ+ +AR E+ M L++VC P+CGHRW +
Sbjct: 152 QDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 203
>emb|CAG02857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 126
Score = 153 bits (387), Expect = 8e-37
Identities = 65/112 (58%), Positives = 88/112 (78%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E +ILLYACRNCD+Q+ ADN C+Y N+I H V E TQ++ DV+
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 74
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
DPTLPRT+ C +C H EAVFFQ+ + + E+ M L++VC P+CGHRW +
Sbjct: 75 QDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gb|AAH83411.1| Zgc:103515 [Danio rerio] gi|54400528|ref|NP_001006013.1| zgc:103515
[Danio rerio]
Length = 126
Score = 152 bits (385), Expect = 1e-36
Identities = 65/112 (58%), Positives = 88/112 (78%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E +ILLYACRNCD+Q+ ADN C++ N+I H V E TQ++ DVA
Sbjct: 15 IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIHVNKITHEVDELTQIIADVA 74
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
DPTLPRT+ C +C H EAVFFQ+ + + E+ M L++VC P+CGHRW +
Sbjct: 75 QDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRWTE 126
>gb|AAF55045.1| CG3284-PA [Drosophila melanogaster] gi|24646802|ref|NP_731898.1|
CG3284-PA [Drosophila melanogaster]
gi|542563|pir||S39445 DNA-directed RNA polymerase (EC
2.7.7.6) II chain 9, 15K - fruit fly (Drosophila
melanogaster)
Length = 129
Score = 152 bits (383), Expect = 2e-36
Identities = 66/112 (58%), Positives = 87/112 (76%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E KILLYACRNCD+++ AD+ C+Y N+I H + E T ++ DV
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
+DPTLPRT+ C +C+H EAVFFQA T R EE M L++VC N NC HRW +
Sbjct: 78 SDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>gb|EAL27791.1| GA17176-PA [Drosophila pseudoobscura]
Length = 129
Score = 152 bits (383), Expect = 2e-36
Identities = 66/112 (58%), Positives = 87/112 (76%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E KILLYACRNCD+++ AD+ C+Y N+I H + E T ++ DV
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
+DPTLPRT+ C +C+H EAVFFQA T R EE M L++VC N NC HRW +
Sbjct: 78 SDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>ref|XP_317057.2| ENSANGP00000019703 [Anopheles gambiae str. PEST]
gi|55237295|gb|EAA12329.2| ENSANGP00000019703 [Anopheles
gambiae str. PEST]
Length = 128
Score = 150 bits (378), Expect = 9e-36
Identities = 65/112 (58%), Positives = 87/112 (77%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E KILLYACRNCD+++ AD+ C+Y N+I H + E T ++ DV
Sbjct: 17 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 76
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
+DPTLPRT+ C +C+H EAVFFQA T R EE M L++VC N +C HRW +
Sbjct: 77 SDPTLPRTEEHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNSSCCHRWTE 128
>gb|AAB29028.2| RNA polymerase II subunit 9 [Drosophila melanogaster]
Length = 129
Score = 149 bits (375), Expect = 2e-35
Identities = 65/112 (58%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E KILLYACRNCD+++ AD+ C+Y N+I H + E T ++ DV
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
+DPTLPRT+ C +C+H EAV FQA T R EE M L++VC N NC HRW +
Sbjct: 78 SDPTLPRTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>ref|XP_396002.1| PREDICTED: similar to ENSANGP00000019703 [Apis mellifera]
Length = 130
Score = 149 bits (375), Expect = 2e-35
Identities = 64/112 (57%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E K+L+YACRNCD ++ AD+ C+Y N+I H + E T ++ DV
Sbjct: 19 IRFCQECNNMLYPKEDKENKVLMYACRNCDFKQLADSNCIYVNKIMHEIDELTHIVADVI 78
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
+DPTLPRT+ C +CNH EAVFFQA T R EE M L++VC N +C HRW +
Sbjct: 79 SDPTLPRTEDHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCCHRWTE 130
>gb|AAB21674.1| RNA polymerase II 15-kda subunit [Drosophila melanogaster]
gi|548819|sp|P36958|RPB9_DROME DNA-directed RNA
polymerase II 15.1 kDa polypeptide
Length = 129
Score = 147 bits (370), Expect = 8e-35
Identities = 63/112 (56%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
++FC+ECNN+LYPKED+E KILLYACRNCD+++ ++ C+Y N+I H + E T ++ DV
Sbjct: 18 IRFCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKIMHEIDELTHIVPDVI 77
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
+DPTLPRT+ C +C+H EAVFF+A T R EE M L++VC N NC HRW +
Sbjct: 78 SDPTLPRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>ref|XP_533686.1| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa
polypeptide (RPB9) (RPB14.5) [Canis familiaris]
Length = 103
Score = 139 bits (350), Expect = 2e-32
Identities = 61/103 (59%), Positives = 80/103 (77%), Gaps = 1/103 (0%)
Query: 13 ILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTK 72
+LYPKED+E +ILLYACRNCD+Q+ ADN C+Y N+I H V E TQ++ DV+ DPTLPRT+
Sbjct: 1 MLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTE 60
Query: 73 AVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
C +C H EAVFFQ+ +AR E+ M L++VC P+CGHRW +
Sbjct: 61 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 103
>gb|AAK85514.1| Hypothetical protein Y97E10AR.5 [Caenorhabditis elegans]
gi|17566332|ref|NP_505062.1| RNA polymerase II (5I492)
[Caenorhabditis elegans]
Length = 167
Score = 136 bits (343), Expect = 1e-31
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
+KFC ECNN+LYP+ED+E ++L+Y+CRNC+H+E A N C+Y N++ H + E TQ++ D+
Sbjct: 56 IKFCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVGDII 115
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
DPTLP+T+ +C C +AVFFQA T + EE M L++VC + +C HRW +
Sbjct: 116 HDPTLPKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWTE 167
>ref|XP_647216.1| RNA polymerase II core subunit [Dictyostelium discoideum]
gi|60475671|gb|EAL73606.1| RNA polymerase II core
subunit [Dictyostelium discoideum]
Length = 112
Score = 131 bits (330), Expect = 3e-30
Identities = 62/102 (60%), Positives = 73/102 (70%), Gaps = 3/102 (2%)
Query: 11 NNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPR 70
NN+LYPK D+ K LL ACR CDH+E A N CVYRNEI HSV E+TQ+ QD+A+DPTLPR
Sbjct: 8 NNMLYPKADKANKTLLLACRICDHKEEATNNCVYRNEIRHSVMEKTQISQDIASDPTLPR 67
Query: 71 TKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRW 112
TKA +C C EA FFQ+ GMTLF+VC +CG RW
Sbjct: 68 TKAAKCPSCGGREAAFFQSMT-AANGMTLFYVCA--SCGERW 106
>gb|AAW27034.1| unknown [Schistosoma japonicum]
Length = 126
Score = 128 bits (322), Expect = 3e-29
Identities = 58/110 (52%), Positives = 74/110 (66%), Gaps = 1/110 (0%)
Query: 6 FCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAAD 65
FC ECNN+LYPKED+ K L YACRNCD+ + ADN CVY N++ V E ++ DV D
Sbjct: 17 FCSECNNMLYPKEDKRTKTLFYACRNCDYSQEADNPCVYINKLEQEVDELALIVPDVVHD 76
Query: 66 PTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
PTLPRT+ C +C EAVFFQ+ T + EE M L++VC N C H+W +
Sbjct: 77 PTLPRTEDHICRRCGKQEAVFFQSQTLKAEENMRLYYVCTNVECLHKWTE 126
>emb|CAE66160.1| Hypothetical protein CBG11394 [Caenorhabditis briggsae]
Length = 144
Score = 126 bits (317), Expect = 1e-28
Identities = 55/112 (49%), Positives = 80/112 (71%), Gaps = 3/112 (2%)
Query: 4 MKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVA 63
+KFC ECNN+LYP+ED+E ++L+Y+CRNC+H+E A N C+Y N++ H + E TQ++ D+
Sbjct: 35 IKFCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVADII 94
Query: 64 ADPTLPRTKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
DPTLP+T+ C +C +AVFFQA T + EE M L++VC C RW +
Sbjct: 95 HDPTLPKTEEHSCPKCTKRKAVFFQAQTKKAEEEMRLYYVCM--YCQFRWTE 144
>gb|AAS55920.1| DNA-directed RNA polymerase II [Sus scrofa]
Length = 105
Score = 124 bits (310), Expect = 7e-28
Identities = 56/105 (53%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 11 NNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPR 70
NN+LYPKED+E +ILL RNCD+Q+ DN C+Y N+I V E TQ++ DV+ DPTLPR
Sbjct: 1 NNMLYPKEDKENRILLSVSRNCDYQQEGDNSCIYVNKITPEVGELTQIIADVSQDPTLPR 60
Query: 71 TKAVRCVQCNHGEAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRD 114
+ C + H EAVFFQ+ +AR E+ M L++VC P+CGHRW +
Sbjct: 61 NEDHPCQKRGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 105
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.137 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,506,324
Number of Sequences: 2540612
Number of extensions: 5937982
Number of successful extensions: 18761
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 18592
Number of HSP's gapped (non-prelim): 166
length of query: 114
length of database: 863,360,394
effective HSP length: 90
effective length of query: 24
effective length of database: 634,705,314
effective search space: 15232927536
effective search space used: 15232927536
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC149491.7