BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149471.8 + phase: 0
(229 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_464444.1| KH domain-containing protein-like [Oryza sativa... 256 3e-67
ref|XP_474251.1| OSJNBa0087O24.9 [Oryza sativa (japonica cultiva... 243 4e-63
dbj|BAD35424.1| KH domain-containing protein / zinc finger prote... 234 2e-60
gb|AAM62964.1| unknown [Arabidopsis thaliana] gi|12322002|gb|AAG... 181 1e-44
dbj|BAB01961.1| unnamed protein product [Arabidopsis thaliana] 181 1e-44
gb|AAM63810.1| unknown [Arabidopsis thaliana] 176 6e-43
dbj|BAB09811.1| unnamed protein product [Arabidopsis thaliana] g... 176 6e-43
emb|CAC83362.1| similarity to the EST C99174 [Pinus pinaster] 59 8e-08
emb|CAC32255.2| hypothetical zf-CCCH protein L5213.07 [Leishmani... 51 2e-05
dbj|BAB02460.1| unnamed protein product [Arabidopsis thaliana] g... 51 3e-05
gb|AAH82435.1| C3H-1 protein [Xenopus laevis] gi|4580020|gb|AAD2... 50 5e-05
ref|XP_480201.1| putative zinc finger protein [Oryza sativa (jap... 50 6e-05
emb|CAA97707.1| TIS11 [Saccharomyces cerevisiae] gi|995702|emb|C... 48 2e-04
gb|AAP50256.1| FIP1-like protein [Trypanosoma cruzi] 47 3e-04
dbj|BAC42646.1| putative RING-H2 zinc finger protein ATL6 [Arabi... 47 3e-04
gb|AAL87363.1| At1g32359/F27G20.10 [Arabidopsis thaliana] gi|159... 47 3e-04
ref|XP_541624.1| PREDICTED: similar to tristetraprolin [Canis fa... 47 4e-04
emb|CAC38358.1| zinc finger protein [Pisum sativum] 47 4e-04
ref|XP_666758.1| hypothetical protein Chro.70136 [Cryptosporidiu... 47 4e-04
gb|EAK90681.1| 3CCCH domain containing protein (this domain expa... 47 4e-04
>ref|XP_464444.1| KH domain-containing protein-like [Oryza sativa (japonica
cultivar-group)] gi|46389843|dbj|BAD15406.1| KH
domain-containing protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 300
Score = 256 bits (655), Expect = 3e-67
Identities = 131/232 (56%), Positives = 161/232 (68%), Gaps = 11/232 (4%)
Query: 1 MINVGSSPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWE 60
M N+G PP GR P + + PDG P KTRLCNK+NTAEGCK+GDKCHFAHGE E
Sbjct: 70 MTNLGGPAIAPPPGRMP-MGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERE 128
Query: 61 LGRPTVPAYEDTRAMGQMQSSSVGGRIEPPP---PAHGAAAGFGVSATATVSINATLAGA 117
LG+P + MG + G PPP PA A FG SATA +S++A+LAG
Sbjct: 129 LGKPMLMDSSMPPPMGPRPT----GHFAPPPMPSPAMSTPASFGASATAKISVDASLAGG 184
Query: 118 IIGKNDVNSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSV 177
IIG+ VN+KQI +TGAKL+IR+H+SD NL+NIELEG+FDQIK ASAMV +LI+++
Sbjct: 185 IIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMVRELIVSIGGG 244
Query: 178 SGPPGKNI---TSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELRK 226
+ P GK + + P +NFKTKLCENFTKGSCTFG+RCHFAHG +ELRK
Sbjct: 245 APPQGKKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFAHGENELRK 296
Score = 43.9 bits (102), Expect = 0.004
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 176 SVSGPPGKNITSQT---SAPANNFKTKLCENF-TKGSCTFGERCHFAHGTDELRKP 227
+++ PPG+ P KT+LC + T C +G++CHFAHG EL KP
Sbjct: 77 AIAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERELGKP 132
>ref|XP_474251.1| OSJNBa0087O24.9 [Oryza sativa (japonica cultivar-group)]
gi|32488659|emb|CAE03586.1| OSJNBa0087O24.9 [Oryza
sativa (japonica cultivar-group)]
Length = 309
Score = 243 bits (619), Expect = 4e-63
Identities = 132/237 (55%), Positives = 164/237 (68%), Gaps = 17/237 (7%)
Query: 2 INVGSSPAIPPIGRNPNVPQSFPDGSSPPVA--KTRLCNKFNTAEGCKFGDKCHFAHGEW 59
+N+G+ PA+P R P G+S P + KTR+C K+NTAEGCKFGDKCHFAHGE
Sbjct: 75 LNLGN-PAVPAPARAPM--DHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGER 131
Query: 60 ELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPAH-GAAAG-FGVSATATVSINATLAGA 117
ELG+P ++E AM GGR EPPPPA G AG FG SATA +S++A+LAG
Sbjct: 132 ELGKPAYMSHES--AMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASATAKISVDASLAGG 189
Query: 118 IIGKNDVNSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSV 177
IIGK VN+KQIC +TG KLSIR+H+SD NL+NIELEG+FDQIKQAS MV +LI +S
Sbjct: 190 IIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNMVGELIATISPS 249
Query: 178 SGPPGKNITSQTSAPA--------NNFKTKLCENFTKGSCTFGERCHFAHGTDELRK 226
+ ++ +APA +N+KTKLCENF KG+CTFG+RCHFAHG +E RK
Sbjct: 250 TPAKKPAGSAAGAAPAGRGGPGGRSNYKTKLCENFVKGTCTFGDRCHFAHGENEQRK 306
Score = 47.0 bits (110), Expect = 4e-04
Identities = 26/67 (38%), Positives = 36/67 (52%), Gaps = 4/67 (5%)
Query: 165 AMVHDLILNVSSVSGP---PGKNITSQTSAPANNFKTKLCENF-TKGSCTFGERCHFAHG 220
A+ L L +V P P + S PA++ KT++C + T C FG++CHFAHG
Sbjct: 70 AVAKTLNLGNPAVPAPARAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHG 129
Query: 221 TDELRKP 227
EL KP
Sbjct: 130 ERELGKP 136
>dbj|BAD35424.1| KH domain-containing protein / zinc finger protein-like [Oryza
sativa (japonica cultivar-group)]
Length = 295
Score = 234 bits (596), Expect = 2e-60
Identities = 125/227 (55%), Positives = 155/227 (68%), Gaps = 13/227 (5%)
Query: 5 GSSPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRP 64
G++ A PP GR P P + P+G KTR+CNK+NTAEGCK+G KCHFAHGE ELG+P
Sbjct: 74 GTAVAAPP-GRMPLGPGA-PNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGERELGKP 131
Query: 65 TVPAYEDTRAMGQMQSSSVGGRIEPPPPAHGAA--AGFGVSATATVSINATLAGAIIGKN 122
+ MG M + PP P + FG SATA +S++A+LAG IIGK
Sbjct: 132 MLLDNSMPHPMGSMPFEA------PPMPGPDIVPPSTFGASATAKISVDASLAGGIIGKG 185
Query: 123 DVNSKQICHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPG 182
N+K I +TGAKL+IR+++S+PNL+NIELEG+FDQIK ASAMV +LI+ +S + PP
Sbjct: 186 GTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHASAMVTELIVRISG-NAPPA 244
Query: 183 KN--ITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELRKP 227
KN S P +NFKTKLCENF KGSCTFG+RCHFAHG ELRKP
Sbjct: 245 KNPGRGSHAGGPGSNFKTKLCENFNKGSCTFGDRCHFAHGESELRKP 291
Score = 48.1 bits (113), Expect = 2e-04
Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPA 68
KT+LC FN C FGD+CHFAHGE EL +P A
Sbjct: 261 KTKLCENFNKGS-CTFGDRCHFAHGESELRKPPAAA 295
Score = 34.7 bits (78), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 32 AKTRLCNKFNTAEGCKFGDKCHFAH 56
+K + C KF + GC FG CHF H
Sbjct: 33 SKLKPCTKFFSTSGCPFGSSCHFLH 57
>gb|AAM62964.1| unknown [Arabidopsis thaliana] gi|12322002|gb|AAG51040.1| unknown
protein; 15726-17646 [Arabidopsis thaliana]
gi|18399496|ref|NP_566412.1| KH domain-containing
protein / zinc finger (CCCH type) family protein
[Arabidopsis thaliana]
Length = 248
Score = 181 bits (459), Expect = 1e-44
Identities = 100/211 (47%), Positives = 132/211 (62%), Gaps = 13/211 (6%)
Query: 32 AKTRLCNKFNTAEGCKFGDKCHFAH----GEWELGRPTVPAYEDTRAMGQMQSSSVGGRI 87
+K++ C KF + GC FG+ CHF H G + + T + MQ S GGR
Sbjct: 37 SKSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRF 96
Query: 88 EPPPPAH-GAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDSDP 146
+ G + FG SATA S++A+LAGAIIGK V+SKQIC TG KLSI++H+ DP
Sbjct: 97 SGRGESGPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDP 156
Query: 147 NLRNIELEGSFDQIKQASAMVHDLILNVSSVS-GPPGKNI-------TSQTSAPANNFKT 198
NL+NI LEG+ +QI +ASAMV DLI ++S + PPG + + P +NFKT
Sbjct: 157 NLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKT 216
Query: 199 KLCENFTKGSCTFGERCHFAHGTDELRKPGM 229
K+CE F+KG+CTFG+RCHFAHG ELRK G+
Sbjct: 217 KICERFSKGNCTFGDRCHFAHGEAELRKSGI 247
>dbj|BAB01961.1| unnamed protein product [Arabidopsis thaliana]
Length = 231
Score = 181 bits (459), Expect = 1e-44
Identities = 100/211 (47%), Positives = 132/211 (62%), Gaps = 13/211 (6%)
Query: 32 AKTRLCNKFNTAEGCKFGDKCHFAH----GEWELGRPTVPAYEDTRAMGQMQSSSVGGRI 87
+K++ C KF + GC FG+ CHF H G + + T + MQ S GGR
Sbjct: 20 SKSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRF 79
Query: 88 EPPPPAH-GAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDSDP 146
+ G + FG SATA S++A+LAGAIIGK V+SKQIC TG KLSI++H+ DP
Sbjct: 80 SGRGESGPGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDP 139
Query: 147 NLRNIELEGSFDQIKQASAMVHDLILNVSSVS-GPPGKNI-------TSQTSAPANNFKT 198
NL+NI LEG+ +QI +ASAMV DLI ++S + PPG + + P +NFKT
Sbjct: 140 NLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKT 199
Query: 199 KLCENFTKGSCTFGERCHFAHGTDELRKPGM 229
K+CE F+KG+CTFG+RCHFAHG ELRK G+
Sbjct: 200 KICERFSKGNCTFGDRCHFAHGEAELRKSGI 230
>gb|AAM63810.1| unknown [Arabidopsis thaliana]
Length = 240
Score = 176 bits (445), Expect = 6e-43
Identities = 95/208 (45%), Positives = 130/208 (61%), Gaps = 15/208 (7%)
Query: 32 AKTRLCNKFNTAEGCKFGDKCHFAH---------GEWELGRPTVPAYEDTRAMGQMQSSS 82
+K++ C KF + GC FGD CHF H + + RP P + +R M S
Sbjct: 37 SKSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMKNLRP--PVSQVSRNM--QGSGG 92
Query: 83 VGGRIEPP-PPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGAKLSIRE 141
GGR P G + FG S T+ +S++A+LAGAIIGK ++SKQIC TGAKLSI++
Sbjct: 93 PGGRFSGRGDPGSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKD 151
Query: 142 HDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLC 201
H+ DPNL+ IELEG+F+QI AS MV +LI + SV P G P +N+KTK+C
Sbjct: 152 HERDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPHPGSNYKTKIC 211
Query: 202 ENFTKGSCTFGERCHFAHGTDELRKPGM 229
+ ++KG+CT+G+RCHFAHG ELR+ G+
Sbjct: 212 DRYSKGNCTYGDRCHFAHGESELRRSGI 239
>dbj|BAB09811.1| unnamed protein product [Arabidopsis thaliana]
gi|26451009|dbj|BAC42611.1| unknown protein [Arabidopsis
thaliana] gi|28950801|gb|AAO63324.1| At5g06770
[Arabidopsis thaliana] gi|15240145|ref|NP_196295.1| KH
domain-containing protein / zinc finger (CCCH type)
family protein [Arabidopsis thaliana]
Length = 240
Score = 176 bits (445), Expect = 6e-43
Identities = 93/206 (45%), Positives = 128/206 (61%), Gaps = 11/206 (5%)
Query: 32 AKTRLCNKFNTAEGCKFGDKCHFAH-------GEWELGRPTVPAYEDTRAMGQMQSSSVG 84
+K++ C KF + GC FGD CHF H ++ P + +R M S G
Sbjct: 37 SKSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNM--QGSGGPG 94
Query: 85 GRIEPP-PPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGAKLSIREHD 143
GR P G + FG S T+ +S++A+LAGAIIGK ++SKQIC TGAKLSI++H+
Sbjct: 95 GRFSGRGDPGSGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHE 153
Query: 144 SDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCEN 203
DPNL+ IELEG+F+QI AS MV +LI + SV P G P +N+KTK+C+
Sbjct: 154 RDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPHPGSNYKTKICDR 213
Query: 204 FTKGSCTFGERCHFAHGTDELRKPGM 229
++KG+CT+G+RCHFAHG ELR+ G+
Sbjct: 214 YSKGNCTYGDRCHFAHGESELRRSGI 239
>emb|CAC83362.1| similarity to the EST C99174 [Pinus pinaster]
Length = 80
Score = 59.3 bits (142), Expect = 8e-08
Identities = 31/56 (55%), Positives = 36/56 (63%), Gaps = 3/56 (5%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAY--EDTRAMGQMQSS-SVGG 85
KTRLC+ F T GC+FGDKCHFAHGE ELG+ A+ +D A G S VGG
Sbjct: 5 KTRLCSNFGTDTGCRFGDKCHFAHGEKELGKVNAVAHNLKDDLATGPFGSRFPVGG 60
Score = 49.3 bits (116), Expect = 8e-05
Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 193 ANNFKTKLCENF-TKGSCTFGERCHFAHGTDELRK 226
A+N+KT+LC NF T C FG++CHFAHG EL K
Sbjct: 1 ASNYKTRLCSNFGTDTGCRFGDKCHFAHGEKELGK 35
>emb|CAC32255.2| hypothetical zf-CCCH protein L5213.07 [Leishmania major]
Length = 364
Score = 51.2 bits (121), Expect = 2e-05
Identities = 19/34 (55%), Positives = 26/34 (75%)
Query: 195 NFKTKLCENFTKGSCTFGERCHFAHGTDELRKPG 228
N+KT+LC+ F +G C G +C+FAHG ELR+PG
Sbjct: 208 NYKTRLCKGFAEGHCNRGNQCNFAHGVGELRQPG 241
Score = 38.9 bits (89), Expect = 0.11
Identities = 28/69 (40%), Positives = 34/69 (48%), Gaps = 10/69 (14%)
Query: 33 KTRLCNKFNTAEG-CKFGDKCHFAHGEWEL-----GRPTVPAYEDTRAMGQM--QSSSVG 84
KTRLC F AEG C G++C+FAHG EL G P P + + M Q +
Sbjct: 210 KTRLCKGF--AEGHCNRGNQCNFAHGVGELRQPGGGEPIPPPPQQQQHMPQQLPPAGLAA 267
Query: 85 GRIEPPPPA 93
G PPP A
Sbjct: 268 GGSAPPPMA 276
>dbj|BAB02460.1| unnamed protein product [Arabidopsis thaliana]
gi|19548069|gb|AAL87398.1| AT3g19360/MLD14_8
[Arabidopsis thaliana] gi|14335094|gb|AAK59826.1|
AT3g19360/MLD14_8 [Arabidopsis thaliana]
gi|18402211|ref|NP_566631.1| zinc finger (CCCH-type)
family protein [Arabidopsis thaliana]
Length = 386
Score = 50.8 bits (120), Expect = 3e-05
Identities = 30/74 (40%), Positives = 38/74 (50%), Gaps = 13/74 (17%)
Query: 1 MINVGSSPAIPPIGRNPNVPQSFPDGSSPPVA-------------KTRLCNKFNTAEGCK 47
+I+VG++ A P N+ + GS P A KTRLC KF+ C
Sbjct: 226 VISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCP 285
Query: 48 FGDKCHFAHGEWEL 61
FGDKCHFAHG+ EL
Sbjct: 286 FGDKCHFAHGQAEL 299
Score = 50.8 bits (120), Expect = 3e-05
Identities = 59/224 (26%), Positives = 80/224 (35%), Gaps = 28/224 (12%)
Query: 20 PQSFPDGSSPPVAK--------TRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYE- 70
P P + PPV K TR+C KF A C+ G+ C+FAHG +L +P E
Sbjct: 85 PWMVPSLNPPPVNKGTANIFYKTRMCAKFR-AGTCRNGELCNFAHGIEDLRQPPSNWQEI 143
Query: 71 -DTRAMGQMQSSSVGGRIEPPPPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQI 129
GQ + E P+ + + L +
Sbjct: 144 VGPPPAGQDRERERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDR 203
Query: 130 CHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQT 189
C+ LS DS + + Q S +LI V+ P
Sbjct: 204 CNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLI-EVNRQGSIP-------V 255
Query: 190 SAPANN--------FKTKLCENFT-KGSCTFGERCHFAHGTDEL 224
AP NN +KT+LC F G C FG++CHFAHG EL
Sbjct: 256 PAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299
Score = 46.2 bits (108), Expect = 7e-04
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 166 MVHDLILN-VSSVSGPPGKN---ITSQTSAPANN------FKTKLCENFTKGSCTFGERC 215
+V D + N SS P N + S P N +KT++C F G+C GE C
Sbjct: 65 LVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCRNGELC 124
Query: 216 HFAHGTDELRKP 227
+FAHG ++LR+P
Sbjct: 125 NFAHGIEDLRQP 136
>gb|AAH82435.1| C3H-1 protein [Xenopus laevis] gi|4580020|gb|AAD24207.1| CCCH zinc
finger protein C3H-1 [Xenopus laevis]
Length = 313
Score = 50.1 bits (118), Expect = 5e-05
Identities = 22/49 (44%), Positives = 31/49 (62%), Gaps = 1/49 (2%)
Query: 180 PPGKNITSQTSAPANNFKTKLCENFTK-GSCTFGERCHFAHGTDELRKP 227
PP K AP+ +KT+LC F++ G+C +G +C FAHG ELR+P
Sbjct: 88 PPLKTALPALPAPSPRYKTELCRTFSETGTCKYGAKCQFAHGKIELREP 136
Score = 43.9 bits (102), Expect = 0.004
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 8 PAIPPIGRNPNVPQSFPDGSSP-PVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRP 64
PA PP P + + P +P P KT LC F+ CK+G KC FAHG+ EL P
Sbjct: 81 PAPPP--GFPPLKTALPALPAPSPRYKTELCRTFSETGTCKYGAKCQFAHGKIELREP 136
Score = 35.4 bits (80), Expect = 1.2
Identities = 25/75 (33%), Positives = 30/75 (39%), Gaps = 13/75 (17%)
Query: 30 PVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGG---- 85
P KT LC+KF C +G +C+F H P + T QS S G
Sbjct: 140 PKYKTELCHKFYLYGECPYGSRCNFIHH---------PREQGTSQHILRQSLSYSGVPTR 190
Query: 86 RIEPPPPAHGAAAGF 100
R PPPP A F
Sbjct: 191 RGSPPPPGLPDPAAF 205
>ref|XP_480201.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)] gi|37806157|dbj|BAC99662.1| putative
zinc finger protein [Oryza sativa (japonica
cultivar-group)] gi|29467558|dbj|BAC66728.1| putative
zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 367
Score = 49.7 bits (117), Expect = 6e-05
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 25/206 (12%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPT------VPAYEDTRAMGQMQSSSVGGR 86
KT+LC KF A C + C+FAHG EL +P V A+E+ + +
Sbjct: 89 KTKLCCKFR-AGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEAREEHQIPIMTS 147
Query: 87 IEPPPPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDS-- 144
P G G + + + + RE +
Sbjct: 148 SGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAIS 207
Query: 145 -DPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCEN 203
P++ GS++ A+A + ++ +GP K +N+KT++C
Sbjct: 208 LSPSVGGGGGGGSYNSAAAAAASA-----SAAAGNGPMQK---------PSNWKTRICNK 253
Query: 204 FTK-GSCTFGERCHFAHGTDELRKPG 228
+ G C FG +CHFAHG EL K G
Sbjct: 254 WEMTGYCPFGSKCHFAHGAAELHKYG 279
Score = 48.1 bits (113), Expect = 2e-04
Identities = 22/49 (44%), Positives = 28/49 (56%)
Query: 179 GPPGKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELRKP 227
G G N + + FKTKLC F G+C + C+FAHG +ELRKP
Sbjct: 71 GEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKP 119
Score = 44.3 bits (103), Expect = 0.003
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWEL 61
KTR+CNK+ C FG KCHFAHG EL
Sbjct: 247 KTRICNKWEMTGYCPFGSKCHFAHGAAEL 275
Score = 42.4 bits (98), Expect = 0.010
Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 26 GSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGG 85
G S K R C KF T EGC +GD C F H E R +V S SVGG
Sbjct: 164 GGSGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARESVAI---------SLSPSVGG 214
Query: 86 RIEPPPPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICH 131
G + +A A S +A + K +IC+
Sbjct: 215 --------GGGGGSYNSAAAAAASASAAAGNGPMQKPSNWKTRICN 252
>emb|CAA97707.1| TIS11 [Saccharomyces cerevisiae] gi|995702|emb|CAA62651.1| L3143
[Saccharomyces cerevisiae] gi|914206|gb|AAB33266.1|
Ytis11p [Saccharomyces cerevisiae]
gi|6323165|ref|NP_013237.1| mRNA-binding protein
expressed during iron starvation; binds to a sequence
element in the 3'-untranslated regions of specific mRNAs
to mediate their degradation; involved in iron
homeostasis; Tis11p [Saccharomyces cerevisiae]
gi|1706181|sp|P47977|CTH2_YEAST Zinc finger protein CTH2
(YTIS11 protein) gi|45270310|gb|AAS56536.1| YLR136C
[Saccharomyces cerevisiae] gi|1256907|gb|AAB82400.1|
Tis11p [Saccharomyces cerevisiae]
gi|1020085|gb|AAB39898.1| zinc finger protein
[Saccharomyces cerevisiae]
Length = 285
Score = 47.8 bits (112), Expect = 2e-04
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 176 SVSGPPGKNITSQTSAPANNFKTKLCENFT-KGSCTFGERCHFAHGTDELR 225
S + P K+ +T P +KT+LCE+FT KGSC +G +C FAHG EL+
Sbjct: 152 SSAQPKVKSQVQET--PKQLYKTELCESFTLKGSCPYGSKCQFAHGLGELK 200
Score = 37.0 bits (84), Expect = 0.43
Identities = 15/29 (51%), Positives = 16/29 (54%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWEL 61
KT LC F C +G KC FAHG EL
Sbjct: 171 KTELCESFTLKGSCPYGSKCQFAHGLGEL 199
Score = 36.6 bits (83), Expect = 0.56
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 195 NFKTKLCENFTK-GSCTFGERCHFAHGTD 222
NF+TK C N+ K G C +G RC F HG D
Sbjct: 207 NFRTKPCVNWEKLGYCPYGRRCCFKHGDD 235
>gb|AAP50256.1| FIP1-like protein [Trypanosoma cruzi]
Length = 280
Score = 47.4 bits (111), Expect = 3e-04
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 180 PPGKNITSQTSAPANNF-KTKLCENFTKGSCTFGERCHFAHGTDELR 225
PP + + +AP +NF KTKLC+ F G C G++C +AHG ELR
Sbjct: 163 PPQGSSHAYYAAPRDNFLKTKLCQRFALGRCVKGDQCSYAHGHGELR 209
Score = 34.3 bits (77), Expect = 2.8
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 5 GSSPAIPPIGRNPNVPQSFPDGSSPPVAKTRLCNKFNTAEGCKFGDKCHFAHGEWELGRP 64
G+S +PP G + ++ KT+LC +F C GD+C +AHG EL R
Sbjct: 157 GASYYVPPQGSS----HAYYAAPRDNFLKTKLCQRFALGR-CVKGDQCSYAHGHGEL-RS 210
Query: 65 TVPAYEDTRAMGQMQSSSVGGRIEPPPPAH---GAAAGFGVSATATVSINATLAG 116
P + + Q S + PP H G G+ T + T+AG
Sbjct: 211 APPVQQQQQQQQQPPSCIL-------PPFHVEQGYMPSMGMPPTGV--LEPTVAG 256
>dbj|BAC42646.1| putative RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana]
gi|18398397|ref|NP_564396.1| zinc finger (CCCH-type)
family protein [Arabidopsis thaliana]
gi|25513554|pir||D86448 F5D14.12 protein - Arabidopsis
thaliana gi|12597862|gb|AAG60171.1| unknown protein
[Arabidopsis thaliana] gi|8920610|gb|AAF81332.1|
Contains similarity to an unknown protein At2g35430
gi|3608145 from Arabidopsis thaliana BAC T32F12
gb|AC005314. It contains a zinc finger C-x8-C-x5-C-x3-H
type domain PF|00642. ESTs gb|AV557765 and gb|AV544407
come from this gene
Length = 384
Score = 47.4 bits (111), Expect = 3e-04
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 20/99 (20%)
Query: 146 PNLRNIELEGSFDQIKQASAMVHDLILNVSSVS-GPPGKNI--------TSQTSAPANN- 195
PNL + + + D +A AM D N S + GPP K + TSA +N
Sbjct: 28 PNLGDSAVWATEDDYNRAWAMNPD---NTSGDNNGPPNKKTRGSPSSSSATTTSAASNRT 84
Query: 196 -------FKTKLCENFTKGSCTFGERCHFAHGTDELRKP 227
FKTKLC F G+C + C+FAH +ELR+P
Sbjct: 85 KAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRP 123
Score = 44.7 bits (104), Expect = 0.002
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGR 63
KTR+CNK+ C FG KCHFAHG EL R
Sbjct: 262 KTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 42.7 bits (99), Expect = 0.008
Identities = 54/215 (25%), Positives = 86/215 (39%), Gaps = 32/215 (14%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPP 92
KT+LC KF A C + C+FAH EL RP P +++ A + + S G + P
Sbjct: 93 KTKLCCKFR-AGTCPYITNCNFAHTVEELRRPP-PNWQEIVAAHEEERS---GGMGTPTV 147
Query: 93 AHGAAAGFGVSATATVSINATLAGAIIGKN--DVNSKQICHITGAKLSIREHDSDPNLRN 150
+ + VS A + G++ +++ C G + ++ N +
Sbjct: 148 SVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPY-GESCTFLHDEASRNRES 206
Query: 151 IELE----------------GSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPAN 194
+ + GS +S +V V G G Q P+N
Sbjct: 207 VAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVV------VLGGGGGSGSGSGIQILKPSN 260
Query: 195 NFKTKLCENFT-KGSCTFGERCHFAHGTDELRKPG 228
+KT++C + G C FG +CHFAHG EL + G
Sbjct: 261 -WKTRICNKWEITGYCPFGAKCHFAHGAAELHRFG 294
>gb|AAL87363.1| At1g32359/F27G20.10 [Arabidopsis thaliana]
gi|15912259|gb|AAL08263.1| At1g32359/F27G20.10
[Arabidopsis thaliana]
Length = 384
Score = 47.4 bits (111), Expect = 3e-04
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 20/99 (20%)
Query: 146 PNLRNIELEGSFDQIKQASAMVHDLILNVSSVS-GPPGKNI--------TSQTSAPANN- 195
PNL + + + D +A AM D N S + GPP K + TSA +N
Sbjct: 28 PNLGDSAVWATEDDYNRAWAMNPD---NTSGDNNGPPNKKTRGSPSSSSATTTSAASNRT 84
Query: 196 -------FKTKLCENFTKGSCTFGERCHFAHGTDELRKP 227
FKTKLC F G+C + C+FAH +ELR+P
Sbjct: 85 KAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRP 123
Score = 44.7 bits (104), Expect = 0.002
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGR 63
KTR+CNK+ C FG KCHFAHG EL R
Sbjct: 262 KTRICNKWEITGYCPFGAKCHFAHGAAELHR 292
Score = 42.7 bits (99), Expect = 0.008
Identities = 54/215 (25%), Positives = 86/215 (39%), Gaps = 32/215 (14%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPP 92
KT+LC KF A C + C+FAH EL RP P +++ A + + S G + P
Sbjct: 93 KTKLCCKFR-AGTCPYITNCNFAHTVEELRRPP-PNWQEIVAAHEEERS---GGMGTPTV 147
Query: 93 AHGAAAGFGVSATATVSINATLAGAIIGKN--DVNSKQICHITGAKLSIREHDSDPNLRN 150
+ + VS A + G++ +++ C G + ++ N +
Sbjct: 148 SVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPY-GESCTFLHDEASRNRES 206
Query: 151 IELE----------------GSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPAN 194
+ + GS +S +V V G G Q P+N
Sbjct: 207 VAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVV------VLGGGGGSGSGSGIQILKPSN 260
Query: 195 NFKTKLCENFT-KGSCTFGERCHFAHGTDELRKPG 228
+KT++C + G C FG +CHFAHG EL + G
Sbjct: 261 -WKTRICNKWEITGYCPFGAKCHFAHGAAELHRFG 294
>ref|XP_541624.1| PREDICTED: similar to tristetraprolin [Canis familiaris]
Length = 292
Score = 47.0 bits (110), Expect = 4e-04
Identities = 31/94 (32%), Positives = 43/94 (44%), Gaps = 13/94 (13%)
Query: 11 PPIGRNPNVPQSFPDGSSPPVA-----------KTRLCNKFNTAEGCKFGDKCHFAHGEW 59
PP G P P+ P+ S P + KT LC F+ + C++G KC FAHG
Sbjct: 75 PPPGFAPLAPRPGPELSPSPTSPTATPTTSSRYKTELCRTFSESGRCRYGAKCQFAHGLG 134
Query: 60 ELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPA 93
EL + + T+++ S GR PPPA
Sbjct: 135 ELRQASRHPKYKTKSIS--FSGLPSGRRPSPPPA 166
Score = 43.9 bits (102), Expect = 0.004
Identities = 20/44 (45%), Positives = 30/44 (67%), Gaps = 3/44 (6%)
Query: 186 TSQTSAP--ANNFKTKLCENFTK-GSCTFGERCHFAHGTDELRK 226
TS T+ P ++ +KT+LC F++ G C +G +C FAHG ELR+
Sbjct: 95 TSPTATPTTSSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 138
>emb|CAC38358.1| zinc finger protein [Pisum sativum]
Length = 207
Score = 47.0 bits (110), Expect = 4e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 196 FKTKLCENFTKGSCTFGERCHFAHGTDELRKP 227
FKT++C F GSC GE C +AHG DE+R+P
Sbjct: 45 FKTRICTKFGLGSCRNGENCTYAHGADEIRQP 76
Score = 38.5 bits (88), Expect = 0.15
Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 46/193 (23%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPP 92
KTR+C KF C+ G+ C +AHG E I PPP
Sbjct: 46 KTRICTKFGLGS-CRNGENCTYAHGADE--------------------------IRQPPP 78
Query: 93 AHGAAAGFGVSATATVSINATLAGAIIGKNDVNSK----QICHITGAKLSIREHDSDPNL 148
G + N II K + K +IC G + H++
Sbjct: 79 NWQELVGPRTEERLQLGANWNDDEKIIQKMKLCKKYCNGEICPY-GNNCNFL-HENPAKF 136
Query: 149 RNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCENFTK-G 207
R+ + +++SA +++ + + G S+ +KTK+C + G
Sbjct: 137 RDDPWK-----TRESSA------ISIETCNNLEGSRAGSKQER-GTYWKTKICLRWKNTG 184
Query: 208 SCTFGERCHFAHG 220
SC FG CHFAHG
Sbjct: 185 SCPFGNGCHFAHG 197
Score = 36.6 bits (83), Expect = 0.56
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGE 58
KT++C ++ C FG+ CHFAHG+
Sbjct: 173 KTKICLRWKNTGSCPFGNGCHFAHGD 198
>ref|XP_666758.1| hypothetical protein Chro.70136 [Cryptosporidium hominis]
gi|54657808|gb|EAL36525.1| hypothetical protein
Chro.70136 [Cryptosporidium hominis]
Length = 577
Score = 47.0 bits (110), Expect = 4e-04
Identities = 20/46 (43%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 184 NITSQTSAPANN--FKTKLCENFTKGSCTFGERCHFAHGTDELRKP 227
++ ++ S ++N +KTKLC F+KG+C G+ C FAHG+++LR P
Sbjct: 67 DVDTEGSEESHNQYWKTKLCLMFSKGACKNGDNCRFAHGSEDLRTP 112
Score = 43.9 bits (102), Expect = 0.004
Identities = 19/34 (55%), Positives = 22/34 (63%)
Query: 192 PANNFKTKLCENFTKGSCTFGERCHFAHGTDELR 225
P N KTKLC + +C+ GE C FAHGT ELR
Sbjct: 112 PVNLKKTKLCPFWLSSACSIGENCPFAHGTTELR 145
Score = 34.7 bits (78), Expect = 2.1
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRP 64
KT+LC F+ CK GD C FAHG +L P
Sbjct: 82 KTKLCLMFSKG-ACKNGDNCRFAHGSEDLRTP 112
>gb|EAK90681.1| 3CCCH domain containing protein (this domain expanded in
plasmodium), transcripts identified by EST
[Cryptosporidium parvum] gi|66362664|ref|XP_628298.1|
3CCCH domain containing protein (this domain expanded in
plasmodium), [Cryptosporidium parvum]
Length = 591
Score = 47.0 bits (110), Expect = 4e-04
Identities = 20/46 (43%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 184 NITSQTSAPANN--FKTKLCENFTKGSCTFGERCHFAHGTDELRKP 227
++ ++ S ++N +KTKLC F+KG+C G+ C FAHG+++LR P
Sbjct: 79 DVDTEGSEESHNQYWKTKLCLMFSKGACKNGDNCRFAHGSEDLRTP 124
Score = 43.9 bits (102), Expect = 0.004
Identities = 19/34 (55%), Positives = 22/34 (63%)
Query: 192 PANNFKTKLCENFTKGSCTFGERCHFAHGTDELR 225
P N KTKLC + +C+ GE C FAHGT ELR
Sbjct: 124 PVNLKKTKLCPFWLSSACSIGENCPFAHGTTELR 157
Score = 34.7 bits (78), Expect = 2.1
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 33 KTRLCNKFNTAEGCKFGDKCHFAHGEWELGRP 64
KT+LC F+ CK GD C FAHG +L P
Sbjct: 94 KTKLCLMFSKG-ACKNGDNCRFAHGSEDLRTP 124
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,347,721
Number of Sequences: 2540612
Number of extensions: 18039703
Number of successful extensions: 46901
Number of sequences better than 10.0: 558
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 45395
Number of HSP's gapped (non-prelim): 1702
length of query: 229
length of database: 863,360,394
effective HSP length: 124
effective length of query: 105
effective length of database: 548,324,506
effective search space: 57574073130
effective search space used: 57574073130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 73 (32.7 bits)
Medicago: description of AC149471.8