BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149471.17 - phase: 0 /pseudo
         (1391 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...  1053  0.0
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...  1051  0.0
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...  1034  0.0
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia...   959  0.0
gb|AAU89728.1| putative retroelement pol polyprotein-like [Solan...   951  0.0
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...   949  0.0
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf...   946  0.0
gb|AAF79879.1| T7N9.5 [Arabidopsis thaliana]                          940  0.0
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...   930  0.0
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis...   918  0.0
gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|2...   872  0.0
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]               815  0.0
pir||G86301 probable retroelement polyprotein [imported] - Arabi...   795  0.0
gb|AAT40550.1| putative receptor kinase [Solanum demissum]            790  0.0
emb|CAA72989.1| unnamed protein product [Brassica oleracea] gi|7...   751  0.0
emb|CAB77940.1| putative polyprotein [Arabidopsis thaliana] gi|4...   731  0.0
gb|AAK43485.1| polyprotein, putative [Arabidopsis thaliana]           714  0.0
gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica ...   696  0.0
gb|AAU89779.1| gag-pol polyprotein-like [Solanum tuberosum]           696  0.0
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi...   675  0.0

>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
            (gb|U12626). [Arabidopsis thaliana]
            gi|25301690|pir||G96722 hypothetical protein F20P5.25
            [imported] - Arabidopsis thaliana
          Length = 1315

 Score = 1053 bits (2723), Expect = 0.0
 Identities = 576/1406 (40%), Positives = 838/1406 (58%), Gaps = 117/1406 (8%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            S+  KNKLGF++G IP PD DD     W RCN +V+SWL+NSVS  I  +I+++ TA  +
Sbjct: 4    SIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAI 63

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W DL  RF K    R+  LR  I++L+QG+  +  Y T  + LWEEL S + +P      
Sbjct: 64   WKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPR----- 118

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNN 183
                   +   I R  ++++ FL GLND +  VR+Q+L+   LPSL++V++++ Q+E+  
Sbjct: 119  -----TVEDLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMIDQDETQR 173

Query: 184  ASLSSLSVSDDSSIQINASDVRKFQGRGKNPSQPKPTRLCTFSNRTNHTVDFCYLKHGYP 243
            ++  S +    SS+    S+         +  Q K   +C++ +R  H  D CY KHGYP
Sbjct: 174  SARISTTPGMTSSV-FPVSNQSSQSALNGDTYQKKERPVCSYCSRPGHVEDTCYKKHGYP 232

Query: 244  NVNKAQ-----PRVNA---VTHEDVDAGTSSSIGQGSSTSSNAGFSQEQLVQLASLLQQA 295
               K++     P ++A   +  E+V   TS S G           +  Q+ QL S L  +
Sbjct: 233  TSFKSKQKFVKPSISANAAIGSEEVVNNTSVSTGD---------LTTSQIQQLVSFL--S 281

Query: 296  NLVVPASSSSQASSNHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSF 355
            + + P S+  Q   + IS        +S+  SSS+ + P                     
Sbjct: 282  SKLQPPSTPVQPEVHSIS--------VSSDPSSSSTVCP--------------------- 312

Query: 356  FSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESLS 415
                                    +G+V    +  L+ VL+ P F  NL+SV+ L +S+ 
Sbjct: 313  -----------------------ISGSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMG 349

Query: 416  YSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISC 475
              + F    C++QD     M+G+ KQ+  LY     S S     SS++            
Sbjct: 350  CRIWFDETSCVLQDATRELMVGMGKQVANLYIVDLDSLSHPGTDSSIT------------ 397

Query: 476  NSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDV-CDLCHFAKHKHLPFNSS 534
               +S+ S+ LWH RLGH S Q+L  MS L       NN D  C +CH +K KHLPF S 
Sbjct: 398  --VASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSH 455

Query: 535  ISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFI 594
             + +S  F+L+H+D WGP S+ +  G+RYFLTIVDD+SR  WV LL++K++V T +  F+
Sbjct: 456  NNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFV 515

Query: 595  TMIQTQFHITPKFIRTDNGPEFMLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVG 654
            TM++ QF  T K +R+DN PE   + FY S GI+   SC ETPQQN  VERKHQHILNV 
Sbjct: 516  TMVENQFETTIKGVRSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVA 575

Query: 655  RALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKVFGCLCY 714
            R+L FQS +P S+W   IL AV+LINR+P PIL ++ P+ VL   +P  +  KVFGCLCY
Sbjct: 576  RSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCY 635

Query: 715  ASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPYPHTSL 774
            AST    R K  PRA+   F+GY SGFKG+ L D+++  I VSRHV FHE   P+  + L
Sbjct: 636  ASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDL 695

Query: 775  STTPNWEYFSSSNFS-----DVSNQPTPINSPAIIDDILPPSPPINPPPPPPIPVVSPAS 829
            S      +F   N +       S+   P +S + ++ ILP + P N  P P +       
Sbjct: 696  SQEEQ-NFFPDLNPTPPMQRQSSDHVNPSDSSSSVE-ILPSANPTNNVPEPSV------- 746

Query: 830  RTSTRQTTTPSYLQDYVCNNIHTS-PYPINNYISHHNLSNNYSSFVMSLHTTTEPKSYAE 888
            +TS R+   P+YLQDY C+++ +S P+ I  ++S+  +++ Y +F+  L  T EP +Y E
Sbjct: 747  QTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTE 806

Query: 889  ASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSIERHKARLV 948
            A K   W+ AM  E   LE T TW++  LP++ + IGCRWI+K+KY++DGS+ER+KARLV
Sbjct: 807  AEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLV 866

Query: 949  AKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDLQEDVYML 1008
            A+GY Q EG+DY +T+SPVAKL +++L++ +++     L QLD++NAFL+GDL E++YM 
Sbjct: 867  AQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMR 926

Query: 1009 IPPGIKSNK-----PNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVK 1063
            +P G  S +     PN VC+L+KSLYGLKQASR+WY K +S L    +IQ+  DH+ F+K
Sbjct: 927  LPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLK 986

Query: 1064 KTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSKLGI 1123
             +   F  +LVY+DDIIIA ++      +KS + + FK++DLG+LKYFLG+E+  S  GI
Sbjct: 987  ISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGI 1046

Query: 1124 SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLLYLNTT 1183
             + QRKY LDLL ++G +  KP S P D S+    DS   + ++  YRRL+GRL+YLN T
Sbjct: 1047 HISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNIT 1106

Query: 1184 RPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWA 1243
            RPDITF   +L+QF   P +AH  A  ++L+Y+KG  G+GLF+   S + L+ +++AD+ 
Sbjct: 1107 RPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYN 1166

Query: 1244 GCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQWILYLLQDI 1303
             C D+RRS SG C FLG+SLI W+++KQ  VS+SS+EAEYR+L+ AT EL W+   L+++
Sbjct: 1167 SCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKEL 1226

Query: 1304 HISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQV 1363
             +   K  +L+CDN++A+HIA N VFHERTKH+E DCH VRE++  G+ +L  ++++ Q+
Sbjct: 1227 QVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQI 1286

Query: 1364 ADFFTKALLPKPFNILLSKMGLINIY 1389
            AD FTK L P  F+ L+SKMGL+NI+
Sbjct: 1287 ADPFTKPLYPSHFHRLISKMGLLNIF 1312


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
            gi|25301694|pir||E84535 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana
          Length = 1454

 Score = 1051 bits (2719), Expect = 0.0
 Identities = 581/1416 (41%), Positives = 838/1416 (59%), Gaps = 89/1416 (6%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            SL  KNK GFI+G +  P   DLN   W RCN +V+SWL+NSVS  I ++I+  + A ++
Sbjct: 94   SLDAKNKTGFIDGTLSRPLESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDI 153

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W DL  RF+  +  R  NL   I + +QG+ S+ +Y+T +K LW++L S   +       
Sbjct: 154  WRDLNSRFNVTNLPRTYNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDE----- 208

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNN 183
            PC C  +   +    + +I++FL GLN+ ++IVR Q++    LPSL +VY ++ Q+ S  
Sbjct: 209  PCTCGKAMRLQQKAEQAKIVKFLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQQ 268

Query: 184  ASLSSLSVSDDSSIQINASDVRK---------FQGRGKNPSQPKPTRLCTFSNRTNHTVD 234
             S S++ V+  ++ Q+  S++ +         +   G N  +P    +C+F NR  H  +
Sbjct: 269  -SFSNV-VAPPAAFQV--SEITQSPSMDPTVCYVQNGPNKGRP----ICSFYNRVGHIAE 320

Query: 235  FCYLKHGYPN--VNKAQPRVNAVTHEDVDAGTSSSIGQGSSTSSNAG-FSQEQLVQLASL 291
             CY KHG+P     K +        + + A  + S    +S  S  G  S+EQL Q  ++
Sbjct: 321  RCYKKHGFPPGFTPKGKAGEKLQKPKPLAANVAESSEVNTSLESMVGNLSKEQLQQFIAM 380

Query: 292  LQQANLVVPASSSSQASSNHISANPLISTTISAPESSSAGIIPKPSY------WLLDSGA 345
                    P S+ + AS+   S +  +    S    S  GI+    +      W++DSGA
Sbjct: 381  FSSQLQNTPPSTYATAST---SQSDNLGICFSPSTYSFIGILTVARHTLSSATWVIDSGA 437

Query: 346  NEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLI 405
              H+S + S FSS        V+LP    V +   GT+    +  L +VL+ P F  NLI
Sbjct: 438  THHVSHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDDILLKNVLFIPEFRLNLI 497

Query: 406  SVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHK 465
            S++ L + +   + F    C IQD +  +M+G  +++  LY               V  +
Sbjct: 498  SISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLY------------LLDVGDQ 545

Query: 466  SCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMS-LLYPNIISSNNKDVCDLCHFA 524
            S +V A +  +         +WH RLGH S QRL ++S  L      +   D C +CH A
Sbjct: 546  SISVNAVVDIS---------MWHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLA 596

Query: 525  KHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKA 584
            K + L F +S       F+LLH+D+WGP S+ +V G++YFLTIVDDHSR  W+ LLK+K+
Sbjct: 597  KQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKS 656

Query: 585  EVSTHVINFITMIQTQFHITPKFIRTDNGPEFMLSTFYASHGIIHQKSCVETPQQNGRVE 644
            EV T    FI  ++ Q+ +  K +R+DN PE   ++FYA  GI+   SC ETP+QN  VE
Sbjct: 657  EVLTVFPAFIQQVENQYKVKVKAVRSDNAPELKFTSFYAEKGIVSFHSCPETPEQNSVVE 716

Query: 645  RKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALN 704
            RKHQHILNV RAL+FQS++P S W   +L AVFLINR P+ +L N++PY +L    P   
Sbjct: 717  RKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYE 776

Query: 705  LFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHE 764
              + FGCLCY+ST    R K QPR+R  +FLGY SG+KG+ L D++S  +F+SR+V FHE
Sbjct: 777  QLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHE 836

Query: 765  TFLPYP-----HTSLSTTPNWEYFSSSNFSDVSNQPTPINSPAIIDDILPPSPPINPPPP 819
               P        +SL         SS   SD ++ P+ +  P+ I D+           P
Sbjct: 837  EVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSL--PSQISDL-----------P 883

Query: 820  PPIPVVSPASRTSTRQTTTPSYLQDYVCNNIHTS-PYPINNYISHHNLSNNYSSFVMSLH 878
            P I        +S R    P++L DY CN + +   YPI++ IS+  +S ++  ++ ++ 
Sbjct: 884  PQI--------SSQRVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNIT 935

Query: 879  TTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADG 938
                P +YAEA     W +A+  E+ A+EKT TW++  LP   K +GC+W++ +K+ ADG
Sbjct: 936  KIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADG 995

Query: 939  SIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLH 998
            ++ER+KARLVAKGY Q EGLDY DT+SPVAK+TTI+L++ +S+   W L QLDV+NAFL+
Sbjct: 996  NLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLN 1055

Query: 999  GDLQEDVYMLIPPGIKSNK-----PNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQ 1053
            G+L+E+++M IP G    K      N V +L++S+YGLKQASR+W++K +S L    + +
Sbjct: 1056 GELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKK 1115

Query: 1054 ASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLG 1113
               DH+LF+K     F I+LVYVDDI+IA  S      +   LD  FK++DLG LKYFLG
Sbjct: 1116 THGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLG 1175

Query: 1114 IEVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRL 1173
            +EVA +  GIS+CQRKY L+LL  +G +  KPVS P   ++K+ +D      DI  YRR+
Sbjct: 1176 LEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRI 1235

Query: 1174 VGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSIN 1233
            VG+L+YL  TRPDITF   +L QF S P   H TAA RVL+Y+KG  G+GLF+  +S + 
Sbjct: 1236 VGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLT 1295

Query: 1234 LQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCEL 1293
            L+GF+D+DWA C D+RRS +    F+G+SLISWR+KKQ TVSRSS+EAEYRALA ATCE+
Sbjct: 1296 LKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEM 1355

Query: 1294 QWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILK 1353
             W+  LL  +  S P +P+LY D+ +A++IA NPVFHERTKH+++DCH VRE++  G LK
Sbjct: 1356 VWLFTLLVSLQAS-PPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELK 1414

Query: 1354 LLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIY 1389
            LL V ++DQVAD  TK L P  F  L SKM ++NI+
Sbjct: 1415 LLHVRTEDQVADILTKPLFPYQFEHLKSKMSILNIF 1450


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
            gi|25301701|pir||E84589 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana
          Length = 1461

 Score = 1034 bits (2674), Expect = 0.0
 Identities = 580/1418 (40%), Positives = 833/1418 (57%), Gaps = 90/1418 (6%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            SL  KNKLGF++G +P P   D N   W RCN +V+SWL+NSVS  I ++I+  + A ++
Sbjct: 98   SLDAKNKLGFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDI 157

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W DL +RF+  +  R  NL   I +L+QG+ S+ +Y+T +K LW++L S   + +     
Sbjct: 158  WRDLFDRFNLTNLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQLDSTEALDD----- 212

Query: 124  PCRCEASKVAKIHRNEDQ--IMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEES 181
            PC C   K  ++++  ++  IM+FL GLN+ ++IVR Q++    LPSL +VY ++ Q+ S
Sbjct: 213  PCTC--GKAVRLYQKAEKAKIMKFLAGLNESYAIVRRQIIAKKALPSLAEVYHILDQDNS 270

Query: 182  NN------ASLSSLSVSDDSSIQINASDVRKFQGRGKNPSQPKPTRLCTFSNRTNHTVDF 235
                    A  ++  VS+ S   I + ++   Q     P++ +PT  C+F NR  H  + 
Sbjct: 271  QKGFFNVVAPPAAFQVSEVSHSPITSPEIMYVQS---GPNKGRPT--CSFCNRVGHIAER 325

Query: 236  CYLKHGYP-------NVNKAQPRVNAVTHEDVDAGTSSSIGQGSSTSSNAGFSQEQLVQL 288
            CY KHG+P         +   P+  AV  + V        GQ  + + N  FS +Q+  L
Sbjct: 326  CYKKHGFPPGFTPKGKSSDKPPKPQAVAAQ-VTLSPDKMTGQLETLAGN--FSPDQIQNL 382

Query: 289  ASLLQ---QANLVVPASSSSQASSNHISANPLISTTISAPESSSAGIIP------KPSYW 339
             +L     Q  +V P ++SSQ  ++   +        S       GI+           W
Sbjct: 383  IALFSSQLQPQIVSPQTASSQHEASSSQSVAPSGILFSPSTYCFIGILAVSHNSLSSDTW 442

Query: 340  LLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPA 399
            ++DSGA  H+S +   F +       +V+LP    V +   GTV    +  L +VL+ P 
Sbjct: 443  VIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGPNVRISGVGTVLINKDIILQNVLFIPE 502

Query: 400  FTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVF 459
            F  NLIS++ L   L   + F  + C IQD      +G  K++  LY     S +     
Sbjct: 503  FRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQSPAI---- 558

Query: 460  SSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDV-C 518
                  S N V  +S           +WH RLGH S  RL S+S +       N K   C
Sbjct: 559  ------SVNAVVDVS-----------VWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYC 601

Query: 519  DLCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVI 578
             +CH AK K L F S+ +  ++ FELLH+D+WGP S+ +V G++YFLTIVDDHSR  W+ 
Sbjct: 602  HVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIY 661

Query: 579  LLKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFMLSTFYASHGIIHQKSCVETPQ 638
            LLKSK++V T    FI +++ Q+    K +R+DN  E   + FY + GI+   SC ETP+
Sbjct: 662  LLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELAFTEFYKAKGIVSFHSCPETPE 721

Query: 639  QNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHH 698
            QN  VERKHQHILNV RAL+FQS +   +W   +L AVFLINR P+ +L N++P+ VL  
Sbjct: 722  QNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTG 781

Query: 699  QLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSR 758
            +LP  +  K FGCLCY+ST    R K  PR+R  +FLGY  GFKG+ L D++S  + +SR
Sbjct: 782  KLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISR 841

Query: 759  HVTFHETFLPYPHTSLSTTPNWEYFSSSNFSDVSNQPTPINSPAIIDDILPPSPPINPPP 818
            +V FHE   P   +  S T           SDV     P++S   I   LP         
Sbjct: 842  NVEFHEELFPLASSQQSAT---------TASDVFTPMDPLSSGNSITSHLPS-------- 884

Query: 819  PPPIPVVSPASRTSTRQTTT-PSYLQDYVCNNIHTSP-YPINNYISHHNLSNNYSSFVMS 876
                P +SP+++ S R+ T  P++LQDY C  ++    +PI++ +S+  +S ++  ++ +
Sbjct: 885  ----PQISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHPISSSLSYSQISPSHMLYINN 940

Query: 877  LHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHA 936
            +     P+SY EA     W  A+  E+ A+E+T TW++  LP   K +GC+W++ VK+HA
Sbjct: 941  ISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHA 1000

Query: 937  DGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAF 996
            DGS+ER KAR+VAKGY Q EGLDY +T+SPVAK+ T++L++ +S+   W+L+QLD++NAF
Sbjct: 1001 DGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAF 1060

Query: 997  LHGDLQEDVYMLIPPGIKSNK-----PNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHY 1051
            L+GDL+E +YM +P G    K     PN VC+L+KS+YGLKQASR+W+ K ++ L    +
Sbjct: 1061 LNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGF 1120

Query: 1052 IQASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYF 1111
             +   DH+LFV+   S F +LLVYVDDI+IA  +      +   L ASFK+++LG LKYF
Sbjct: 1121 EKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYF 1180

Query: 1112 LGIEVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYR 1171
            LG+EVA +  GISL QRKY L+LL  +  +D KP S P   +I+L ++      D   YR
Sbjct: 1181 LGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYR 1240

Query: 1172 RLVGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSS 1231
            RLVG+L+YL  TRPDITF   +L QF S P  AH  A  +VL+Y+KG  G+GLF+     
Sbjct: 1241 RLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDD 1300

Query: 1232 INLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATC 1291
            + L+G++DADW  C D+RRS +G   F+G+SLISWR+KKQ TVSRSS+EAEYRALA A+C
Sbjct: 1301 LTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASC 1360

Query: 1292 ELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGI 1351
            E+ W+  LL  + +    +P+LY D+ +A++IA NPVFHERTKH+EIDCH VREK+  G 
Sbjct: 1361 EMAWLSTLLLALRVH-SGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQ 1419

Query: 1352 LKLLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIY 1389
            LKLL V ++DQVAD  TK L P  F  LLSKM + NI+
Sbjct: 1420 LKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSIQNIF 1457


>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7268497|emb|CAB78748.1| retrotransposon like protein
            [Arabidopsis thaliana] gi|7444421|pir||A71444 probable
            LTR retrotransposon - Arabidopsis thaliana
          Length = 1433

 Score =  959 bits (2480), Expect = 0.0
 Identities = 547/1431 (38%), Positives = 795/1431 (55%), Gaps = 137/1431 (9%)

Query: 1    VQRSLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTA 60
            ++ SL  KNKL F++G +P PD  D     W RCN +V++WL+N V+             
Sbjct: 97   MRMSLDAKNKLSFVDGSLPRPDVSDRMFKIWSRCNSMVKTWLLNVVT------------- 143

Query: 61   FEVWHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCS 120
             E+W+DL  RF   +  R   L  +I+ LKQG+  +  Y+T+ K LWE+LA+ R +    
Sbjct: 144  -EMWNDLFSRFRVSNLPRKYQLEQSIHTLKQGNLDLSTYYTKKKTLWEQLANTRVLT--- 199

Query: 121  CIHPCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEE 180
             +  C CE  K         +I+QFL GLND F+ +R Q+L + P P L ++Y+++ Q+E
Sbjct: 200  -VRKCNCEHVKELLEEAETSRIIQFLMGLNDNFAHIRGQILNMKPRPGLTEIYNMLDQDE 258

Query: 181  SNNASLSSLSVSDDSSIQINASDVRKFQGRGKNPSQPKPTRLCTFSNRTNHTVDFCYLKH 240
            S     +    +  ++ Q+ AS +   Q      S  KP   C++ N+  H VD CY KH
Sbjct: 259  SQRLVGNPTLSNPTAAFQVQASPIIDSQVNMAQGSYKKPK--CSYCNKLGHLVDKCYKKH 316

Query: 241  GYPNVNKAQPRVNAVTHEDVDAGTSSSIGQ--GSSTSSNAGFSQEQLVQLASLLQQANLV 298
            GYP  +K   +   +   ++ +     + +     T S   FS +Q+  + S L     +
Sbjct: 317  GYPPGSK-WTKGQTIGSTNLASTQLQPVNETPNEKTDSYEEFSTDQIQTMISYLSTKLHI 375

Query: 299  VPASSSSQASSNHISANP-----------------------LISTTISAPESSSAGIIPK 335
              AS     SS  ISA+P                       LIS+    P  S  G    
Sbjct: 376  ASASPMPTTSSASISASPSVPMISQISGTFLSLFSNAYYDMLISSVSQEPAVSPRG---- 431

Query: 336  PSYWLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVL 395
               W++DSGA  H++ N   + +F  +   +V LPN   V +   G +  +    L +VL
Sbjct: 432  ---WVIDSGATHHVTHNRDLYLNFRSLENTFVRLPNDCTVKIAGIGFIQLSDAISLHNVL 488

Query: 396  YSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSS 455
            Y P F  NLIS  +L + L                    MIG   Q+  LY         
Sbjct: 489  YIPEFKFNLIS--ELTKEL--------------------MIGRGSQVGNLYVL-----DF 521

Query: 456  NSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNK 515
            N    +VS K    +       SS +  +  WH RLGH ++ ++  +S +    +   NK
Sbjct: 522  NENNHTVSLKGTTSMCPEFSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVLNLKVKKINK 581

Query: 516  D------VCDLCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVD 569
            +      VC +CH +K KHL F S  +  S  F+L+H+D WGP S+ +            
Sbjct: 582  EHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAAFDLVHIDTWGPFSVPT------------ 629

Query: 570  DHSRFLWVILLKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFMLSTFYASHGIIH 629
              +   W+ LLK+K++V      FI M+ TQ+    K +R+DN  E   +  +A+HGI+ 
Sbjct: 630  --NDATWIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRSDNAHELKFTDLFAAHGIVA 687

Query: 630  QKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHN 689
              SC ETP+QN  VERKHQHILNV RALLFQS +P  FW   +L AVFLINR+PTP+L+N
Sbjct: 688  YHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNN 747

Query: 690  QSPYFVLHHQLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDI 749
            +SPY  L +  PA    K FGCLCY+ST    R K +PRAR  +FLGY  G+KG+ L DI
Sbjct: 748  KSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDI 807

Query: 750  QSREIFVSRHVTFHETFLPYPHTSLSTTPNWEYFSSSNFSDVSNQPTPINSPAIIDDI-L 808
            ++  + +SRHV FHE   P+              SS+   D+ +    +  PA  DD+ L
Sbjct: 808  ETHAVSISRHVIFHEDIFPF-------------ISSTIKDDIKDFFPLLQFPARTDDLPL 854

Query: 809  PPSPPINPPPPPPIP---VVSPASRTSTRQTTTPSYLQDYVCNNIHTSPYPINNYISHHN 865
              +  I+  P   +     + P    S RQ   P +LQD+ C N  T P+        H 
Sbjct: 855  EQTSIIDTHPHQDVSSSKALVPFDPLSKRQKKPPKHLQDFHCYNNTTEPF--------HA 906

Query: 866  LSNNYSSFVMSLHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIG 925
              NN ++ V+       P+ Y+EA     W  AM+ E+ A+ +T TW +V LP N K IG
Sbjct: 907  FINNITNAVI-------PQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIG 959

Query: 926  CRWIYKVKYHADGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNW 985
            C+W++ +K++ADGSIER+KARLVAKGY Q EGLDY +T+SPVAKLT++R+++ L++   W
Sbjct: 960  CKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKW 1019

Query: 986  HLHQLDVNNAFLHGDLQEDVYMLIPPGI-----KSNKPNQVCKLQKSLYGLKQASRKWYE 1040
             +HQLD++NAFL+GDL E++YM IPPG      ++  P+ +C+L KS+YGLKQASR+WY 
Sbjct: 1020 SVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYL 1079

Query: 1041 KLTSVLSHHHYIQASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASF 1100
            KL++ L    + ++++DH+LF+K  +     +LVYVDDI+I  +S        + L + F
Sbjct: 1080 KLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYF 1139

Query: 1101 KIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDS 1160
            K++DLG  KYFLGIE+A S+ GIS+CQRKY L+LL+ +G + SKP S P D S+KL+++ 
Sbjct: 1140 KLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKED 1199

Query: 1161 SPSYADIPSYRRLVGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCP 1220
                 D  SYR+LVG+L+YL  TRPDI +    L QF   PT  H +A  +VLRYLKG  
Sbjct: 1200 GVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTV 1259

Query: 1221 GRGLFFPRNSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSE 1280
            G+GLF+  +   +L+G++D+D+  C D+RR ++  C F+G+ L+SW++KKQ TVS S++E
Sbjct: 1260 GQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAE 1319

Query: 1281 AEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDC 1340
            AE+RA++  T E+ W+  L  D  +       LYCDN +ALHI  N VFHERTK +E+DC
Sbjct: 1320 AEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVELDC 1379

Query: 1341 HIVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIYQP 1391
            +  RE V++G LK + V + +QVAD  TKA+ P  F+ L+ KMG+ NI+ P
Sbjct: 1380 YKTREAVESGFLKTMFVETGEQVADPLTKAIHPAQFHKLIGKMGVCNIFAP 1430


>gb|AAU89728.1| putative retroelement pol polyprotein-like [Solanum tuberosum]
          Length = 1476

 Score =  951 bits (2458), Expect = 0.0
 Identities = 574/1485 (38%), Positives = 817/1485 (54%), Gaps = 155/1485 (10%)

Query: 1    VQRSLGTKNKLGFINGVIPIPD-ADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDT 59
            +Q +L TKNK+GFI+G +   D  ++L +  W+RCN +V SWL+N+VS  +   I+F   
Sbjct: 34   MQLTLLTKNKMGFIDGSLRRDDFKEELEKKQWDRCNAMVLSWLMNNVSTDLVSGILFRSN 93

Query: 60   AFEVWHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNC 119
            A  VW+DL+ERF KV+  RI +L   I    QG   V  Y++++K LW+E  S  P P+C
Sbjct: 94   ATLVWNDLKERFDKVNMSRIFHLHKAIVTHVQGVSPVSVYYSKLKDLWDEYDSILPPPSC 153

Query: 120  SCIHPCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQE 179
                   CE S          +++QFL GLND +   R+Q+L+++P PS+N+ Y+++VQ+
Sbjct: 154  D------CEKSVDYTDSMLRQKLLQFLMGLNDNYGQARSQILMMNPSPSVNQCYAMIVQD 207

Query: 180  ESNNASLSSLSVSDDSSIQINASDVRKF-----QGRGKNPSQPKPTRL------------ 222
            ES  +   S    D +++  +      F     QG G   S     R             
Sbjct: 208  ESQRSLSGSGQTIDPTALFTHRPGGSGFGSQGSQGSGNGSSNGNSHRFHKGGNIYCDFCN 267

Query: 223  --------------CTFSNRTNHTVDFCYLKHGYPNVNKAQPRVNAVT--------HEDV 260
                          CT  N   HT D CY   GYP   K + + N VT        H + 
Sbjct: 268  MKGHIRANCNKLKHCTHCNMQGHTKDTCYQLIGYPADYKGKKKANIVTAPSLPQMQHNNF 327

Query: 261  DAG-------TSSSIG------------QGSSTSSNAG------FSQEQLVQLASLLQQA 295
            +         T   IG             G S+ S AG        Q    Q  ++LQ  
Sbjct: 328  NNNLNYPMQYTGDGIGHFVSPMQFTGNTNGHSSGSIAGNFGPGSVPQFTPSQYNNILQML 387

Query: 296  NLVVPASSSSQASSNHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSF 355
            N  + + SS+  +     ++   S T S             S W++DSGA +H+  N + 
Sbjct: 388  NKPMLSESSANVAGIFAGSSHCNSNTHS-------------SAWIVDSGATDHMVSNTTL 434

Query: 356  FSSFYRIP-PVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESL 414
             +    +  P  V LP     +V ++G+   T    + +VL  P F  NL+SV+KL + L
Sbjct: 435  LNHGLSVSHPGKVQLPTGDSAVVTHSGSSQLTGGDVVKNVLCVPTFQFNLLSVSKLTKEL 494

Query: 415  SYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATIS 474
            +  + F     IIQD  + K+  + ++++GLY   P      S  +  + K C       
Sbjct: 495  NCCVIFFPDFFIIQDLFTGKVKEIGEEINGLYITRPHQHHDTSKKTLAAIKGCE------ 548

Query: 475  CNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDV---CDLCHFAKHKHLPF 531
                       +WH RLGH+    L  + +       S  K V   CD+C  A+   LPF
Sbjct: 549  --------EAEMWHKRLGHIPMSVLRKIKM-----FDSPQKLVLPSCDVCPLARQVRLPF 595

Query: 532  NSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVI 591
              S S +   F+L+HLD+WGP   A+ +  RYFLT+VDDHSR+ W+ L+  K++VST + 
Sbjct: 596  PISQSRSENCFDLIHLDVWGPYKAATHNKMRYFLTVVDDHSRWTWIFLMHLKSDVSTVLQ 655

Query: 592  NFITMIQTQFHITPKFIRTDNGPEF---MLSTFYASHGIIHQKSCVETPQQNGRVERKHQ 648
            NFI MI TQF    K  R+DNG EF        + SHGI+HQ SC  TPQQNG VER+H+
Sbjct: 656  NFILMIDTQFGQKIKIFRSDNGTEFFNAQCDGLFKSHGIVHQSSCPHTPQQNGVVERRHK 715

Query: 649  HILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKV 708
            HIL   RAL FQ  LP  FW   +L AV +INR+P+ +LHN+SP+ +++ + P L+  +V
Sbjct: 716  HILETARALRFQGHLPIRFWGECVLSAVHIINRIPSSVLHNKSPFELMYKRSPDLSYMRV 775

Query: 709  FGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLP 768
             GCLC+A+ L +  T+                 KG+ LYD++ +  FVSR + F+E   P
Sbjct: 776  IGCLCHATNLVNTSTQ-----------------KGYKLYDLEHQHFFVSRDMVFNEAVFP 818

Query: 769  YPHTSLSTTPNWEYF-----SSSNFSDV-SNQPTPINSPAIIDDILPPSPPINPPPPPPI 822
            +   +L+   +   F      SS+  D  + QP  I S  II    PPS   +    PP 
Sbjct: 819  FQSPALADPHDTPVFLASPPCSSHTEDADAVQPAIITSEEIIPVASPPSAVSDDHLHPP- 877

Query: 823  PVVSPASRTSTRQTTTPSYLQDYVCNNIHTSP---YPINNYISHHNLSNNYSSFVMSLHT 879
                P  R S R    P + +D++  +   S    YPI++ I +  LS+ Y  ++ S   
Sbjct: 878  ----PERRRSYRTGKPPIWQKDFITTSTSRSNHCLYPISDNIDYSCLSSTYQCYIASSSV 933

Query: 880  TTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGS 939
             TEP+ Y +A+    W  AM+ E+QALE   TW++V LP   K IGC+W+YK+KY A G 
Sbjct: 934  ETEPQFYYQAANDCRWVHAMKEEIQALEDNKTWEVVSLPKGKKAIGCKWVYKIKYKASGE 993

Query: 940  IERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHG 999
            IER KARLVAKGYNQ EGLDY +T+SPV K+ T+R V+ L+    W + Q+DV NAFL G
Sbjct: 994  IERFKARLVAKGYNQKEGLDYQETFSPVVKMVTLRTVLTLAVSKGWDIQQMDVYNAFLQG 1053

Query: 1000 DLQEDVYMLIPPGIKSNKPN--QVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSD 1057
            DL E+VYM +P G + +K    +VC+L KSLYGLKQASR+W  KLT+ L    + Q+  D
Sbjct: 1054 DLIEEVYMQLPQGFQYDKTGDPKVCRLLKSLYGLKQASRQWNVKLTTALLAAGFQQSHLD 1113

Query: 1058 HSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVA 1117
            +SL +K+T+    I+L+YVDD++I G SL      K VL A+FKIKDLG L+YFLG+E A
Sbjct: 1114 YSLMLKRTADGIVIVLIYVDDLLITGSSLQLIDDAKQVLKANFKIKDLGTLRYFLGMEFA 1173

Query: 1118 HSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIK-------LHQDSSPS---YADI 1167
             +  G+ + QRKY L+L++D G   SKP  TP +  +K       LH  SS +    AD 
Sbjct: 1174 RNASGMLMHQRKYALELISDLGLGGSKPSVTPVELHLKLTTREFDLHVGSSGADSLLADP 1233

Query: 1168 PSYRRLVGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFP 1227
              Y+RLVGRLLYL  TRPDI+F  Q LSQF+  P  +H  AA+RV++Y+K  PG GL+  
Sbjct: 1234 TEYQRLVGRLLYLTITRPDISFAVQHLSQFMHAPKVSHMEAAIRVVKYVKQAPGLGLYMA 1293

Query: 1228 RNSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALA 1287
              ++  LQ + DADW  C++TR+SI+G     G++L+SW++KKQ T+SRSS+EAEYR+LA
Sbjct: 1294 VQTADTLQAYCDADWGSCINTRKSITGYMIQFGSALLSWKSKKQPTISRSSAEAEYRSLA 1353

Query: 1288 SATCELQWILYLLQDIHISCPKLPV-LYCDNQSALHIAANPVFHERTKHLEIDCHIVREK 1346
            S   EL W+  L +++ +    LPV LYCD+++A+ IAANPVFHERTKH++IDCH +REK
Sbjct: 1354 STVAELVWLTGLFKELDMPL-SLPVSLYCDSKAAIQIAANPVFHERTKHIDIDCHFIREK 1412

Query: 1347 VQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIYQP 1391
            VQAG++ +  + +Q+Q AD  TK L     + L+SK+GL NI+ P
Sbjct: 1413 VQAGLVMIHYLPTQEQPADILTKGLSSAQHSYLVSKLGLKNIFIP 1457


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
            gi|25301698|pir||C84512 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana
          Length = 1501

 Score =  949 bits (2452), Expect = 0.0
 Identities = 550/1479 (37%), Positives = 814/1479 (54%), Gaps = 133/1479 (8%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            +L  K K GFING IP P  +D N   W   N ++  W+  S+   +  T+ F   A  +
Sbjct: 64   ALQAKRKTGFINGTIPRPPPNDPNYENWTAVNSMIVGWIRTSIEPKVKATVTFISDAHLL 123

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W DL++RFS  +++RI  +R+ +++ +Q  ++V++Y+  +  LWEE   ++P+  C+C  
Sbjct: 124  WKDLKQRFSVGNKVRIHQIRAQLSSCRQDGQAVIEYYGRLSNLWEEYNIYKPVTVCTC-G 182

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLND-QFSIVRTQVLLLDPLPSLNKVYSLVVQEESN 182
             CRC A+      R E++I QF+ GL++ +F  +   ++ +DPLPSL ++YS V++EE  
Sbjct: 183  LCRCGATSEPTKEREEEKIHQFVLGLDESRFGGLCATLINMDPLPSLGEIYSRVIREEQR 242

Query: 183  NASLSSLSVSD------------DSSIQINASDVR-KFQGRGKNPSQPKPTRLCTFSNRT 229
             AS+      +            D   +++AS  R +  G  ++ S  K    C+   RT
Sbjct: 243  LASVHVREQKEEAVGFLARREQLDHHSRVDASSSRSEHTGGSRSNSIIKGRVTCSNCGRT 302

Query: 230  NHTVDFCYLKHGYPNV-NKAQPRVNAVTHEDVDAGTSSSIGQGS-----STSSNAG---- 279
             H    C+   G+P+  ++      +        G++   GQG      +TSSN+     
Sbjct: 303  GHEKKECWQIVGFPDWWSERNGGRGSNGRGRGGRGSNGGRGQGQVMAAHATSSNSSVFPE 362

Query: 280  FSQEQLVQLASLLQQANLVVPASSSSQASSNHISANPLISTTISAPESSSAGIIPKPSYW 339
            F++E +  L+ L+++ +    + S+S  +S+ +S    +   I                 
Sbjct: 363  FTEEHMRVLSQLVKEKS---NSGSTSNNNSDRLSGKTKLGDII----------------- 402

Query: 340  LLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPA 399
             LDSGA+ H++  LS  ++   +PP  V   + +       G ++ ++   L++VL+ P+
Sbjct: 403  -LDSGASHHMTGTLSSLTNVVPVPPCPVGFADGSKAFALSVGVLTLSNTVSLTNVLFVPS 461

Query: 400  FTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVF 459
                LISV+KL +       FT   C +QD  S  +IG  ++  G+Y  T          
Sbjct: 462  LNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVYYLTD--------- 512

Query: 460  SSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDVCD 519
                      V     ++++     ALWH RLGH S   L S+ L +    S+     CD
Sbjct: 513  ----------VTPAKIHTANVDSDQALWHQRLGHPSFSVLSSLPL-FSKTSSTVTSHSCD 561

Query: 520  LCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVIL 579
            +C  AK     F  SI+     F L+H D+WGP  + +  G  YFLTIVDD+SR +W  L
Sbjct: 562  VCFRAKQTREVFPESINKTEECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYL 621

Query: 580  LKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFM-LSTFYASHGIIHQKSCVETPQ 638
            L  K+EV   + NF+   + QF  T K +R+DNG EFM LS+++  +GIIHQ SCV TPQ
Sbjct: 622  LLEKSEVRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMCLSSYFRENGIIHQTSCVGTPQ 681

Query: 639  QNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHH 698
            QNGRVERKH+HILNV RALLFQ+ LP  FW  +IL A +LINR P+ IL  ++PY VLH 
Sbjct: 682  QNGRVERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSSILSGRTPYEVLHG 741

Query: 699  QLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSR 758
              P  +  +VFG  CY   +   + K   R+R  IF+GY  G KG+ +YDI+  E  VSR
Sbjct: 742  SKPVYSQLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSR 801

Query: 759  HVTFHETFLPYPHTSLS-------------------------------------TTPNWE 781
             V F E   PY   + S                                     TT    
Sbjct: 802  DVIFREEVFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSIDSVETERVVCTTDEVV 861

Query: 782  YFSSSNFSDVSNQ-----PTPINSPAIIDDILPPSPPINP---PPPPPIPVVSPASRTST 833
              +S + S++ NQ      TP +SP  +     P+ P  P   P   PIPV  P  R S 
Sbjct: 862  LDTSVSDSEIPNQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVPVASPIPVSPPKQRKSK 921

Query: 834  RQTTTPSYLQDYVCNN-------IHTSP--------------YPINNYISHHNLSNNYSS 872
            R T  P  L DYV  N       IH  P              +P+ +Y+S    S+++ +
Sbjct: 922  RATHPPPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPGKSLFPLTDYVSDAAFSSSHRA 981

Query: 873  FVMSLHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKV 932
            ++ ++    EPK + EA +   W  AM  E+ ALE   TW +VDLP     IG +W++K 
Sbjct: 982  YLAAITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKT 1041

Query: 933  KYHADGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDV 992
            KY++DG++ER+KARLV +G  Q+EG DY +T++PV ++TT+R ++   + + W ++Q+DV
Sbjct: 1042 KYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDV 1101

Query: 993  NNAFLHGDLQEDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYI 1052
            +NAFLHGDL+E+VYM +PPG + + P++VC+L+KSLYGLKQA R W++KL+  L    ++
Sbjct: 1102 HNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFV 1161

Query: 1053 QASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFL 1112
            Q+  D+SLF    ++    +L+YVDD++I G+        K  L   F +KDLG+LKYFL
Sbjct: 1162 QSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFL 1221

Query: 1113 GIEVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRR 1172
            GIEV+    GI L QRKY LD++ADSG + S+P  TP + +  L  D  P  +D   YRR
Sbjct: 1222 GIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRR 1281

Query: 1173 LVGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSI 1232
            LVGRLLYL  TRP++++    L+QF+  P +AH  AALRV+RYLKG PG+G+    +  +
Sbjct: 1282 LVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDL 1341

Query: 1233 NLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCE 1292
             L+ + D+DW  C  TRRSIS     LG S ISW+TKKQ TVS SS+EAEYRA++ A  E
Sbjct: 1342 TLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKE 1401

Query: 1293 LQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGIL 1352
            ++W+  LL+++ I       LYCD+++A+HIAANPVFHERTKH+E DCH VR+ V+ GI+
Sbjct: 1402 IKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGII 1461

Query: 1353 KLLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIYQP 1391
                V + +Q+AD FTKAL    F  L+SK+G+ N++ P
Sbjct: 1462 TTQHVRTTEQLADVFTKALGRNQFLYLMSKLGVQNLHTP 1500


>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
            11.19) [Arabidopsis thaliana] gi|7486705|pir||T01879
            hypothetical protein F8M12.17 - Arabidopsis thaliana
          Length = 1633

 Score =  946 bits (2445), Expect = 0.0
 Identities = 549/1459 (37%), Positives = 805/1459 (54%), Gaps = 177/1459 (12%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            +L  +NKLGFI+G I  P  D  +  AW RCN  V +WL+NSVS  I Q+++F  TA  +
Sbjct: 68   ALNVRNKLGFIDGTIVKPPLDHRDYGAWSRCNDTVSTWLMNSVSKKIGQSLLFIPTAEGI 127

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W ++  RF + D  R+ ++   ++ ++QGS  +  Y+TE++ LWEE  ++  +P C+C  
Sbjct: 128  WKNMLSRFKQDDAPRVYDIEQRLSKIEQGSMDISAYYTELQTLWEEHKNYVDLPVCTCGR 187

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNN 183
             C C+A+   +  +    + +FL GLN+ +   R  +L+L P+ ++ + +++V Q+E   
Sbjct: 188  -CECDAAVKWERLQQRSHVTKFLMGLNESYEQTRRHILMLKPIRTIEEAFNIVTQDERQK 246

Query: 184  ASLSSLSVSDDSSIQINASDVRKFQGRGKNPSQPKPTRLCTFSNRTNHTVDFCYLKHGYP 243
            A   +  V +   +++                      LCT   +  HTV  CY   GYP
Sbjct: 247  AIRPTPKVDNQDQLKLP---------------------LCTNCGKVGHTVQKCYKIIGYP 285

Query: 244  NVNKAQPRVNAVTHEDVDAGTSSSIGQGSSTSSNAGFSQEQLVQ-LASLLQQANLVVPAS 302
               KA     A ++      T   +            SQ ++ Q +  L+ Q N  V   
Sbjct: 286  PGYKA-----ATSYRQPQIQTQPRMQMPQQ-------SQPRMQQPIQHLISQFNAQVRVQ 333

Query: 303  SSSQASSNHISANPLISTTISAPESSSAGIIPKPSY------------------------ 338
              +  S    S    I+      ++S++G IP PS                         
Sbjct: 334  EPAATSIYTSSPTATITEHGLMAQTSTSGTIPFPSTSLKYENNNLTFQNHTLSSLQNVLS 393

Query: 339  ---WLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVL 395
               W++DSGA+ H+  +L+ F     +  V V+LPN T V + + GT+  TS   L +VL
Sbjct: 394  SDAWIIDSGASSHVCSDLTMFRELIHVSGVTVTLPNGTRVAITHTGTICITSTLILHNVL 453

Query: 396  YSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSS 455
              P F  NLISV                 C ++ T  L MIG  K  + LY         
Sbjct: 454  LVPDFKFNLISV-----------------CCLELTRGL-MIGRGKTYNNLY--------- 486

Query: 456  NSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIIS-SNN 514
                         ++ T   + S S+P+    H  L  L  Q+L S     P++ S S+ 
Sbjct: 487  -------------ILETQRTSFSPSLPAATSRHPSLPAL--QKLVSS---IPSLKSVSST 528

Query: 515  KDVCDLCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRF 574
               C +   AK K L + S  + AS+ F+L+HLDIWGP SI SV G RYFLT+VDD +R 
Sbjct: 529  ASHCRISPLAKQKRLAYVSHNNLASSPFDLIHLDIWGPFSIESVDGFRYFLTLVDDCTRT 588

Query: 575  LWVILLKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFMLSTFYASHGIIHQKSCV 634
             WV ++K+K+EVS     F+ +I TQ++   K IR+DN  E   + F    G+IHQ SC 
Sbjct: 589  TWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKELAFTKFVKEQGMIHQFSCA 648

Query: 635  ETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYF 694
             TPQQN  VERKHQH+LN+ R+LLFQS +P  +WS  +L A +LINR+P+P+L N++P+ 
Sbjct: 649  YTPQQNSVVERKHQHLLNIARSLLFQSNVPLQYWSDCVLTAAYLINRLPSPLLDNKTPFE 708

Query: 695  VLHHQLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREI 754
            +L  ++P   L K   CLCYAST    R K  PRAR  +FLGY SG+KG+ + D++S  I
Sbjct: 709  LLLKKIPDYTLLK--SCLCYASTNVHDRNKFSPRARPCVFLGYPSGYKGYKVLDLESHSI 766

Query: 755  FVSRHVTFHETFLPY-------------PHTSLSTTPNWEYFSSSNFSDV----SNQPTP 797
             ++R+V FHET  P+             P++ L       +  S    D      N  + 
Sbjct: 767  SITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFVESMPLDDDLRADDNNAST 826

Query: 798  INSPAIIDDILPPSPPINPPPPPPIPVVS---PASRTSTRQTTTPSYLQDYVCNNIH--- 851
             NS +    I P    +N      + + +   P +R   R    P+YL +Y CN++    
Sbjct: 827  SNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPK-RNAKAPAYLSEYHCNSVPFLS 885

Query: 852  ----------------------TSPYPINNYISHHNLSNNYSSFVMSLHTTTEPKSYAEA 889
                                  T+PYP++  IS+  L+  + S++ + +  TEPK++ +A
Sbjct: 886  SLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTPLFHSYICAYNVETEPKAFTQA 945

Query: 890  SKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSIERHKARLVA 949
             K + W +A   EL ALE+  TW +  L      +GC+W++ +KY+ DGSIER+KARLVA
Sbjct: 946  MKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTIKYNPDGSIERYKARLVA 1005

Query: 950  KGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDLQEDVYMLI 1009
            +G+ Q EG+DY +T+SPVAK  +++L++ L++   W L Q+DV+NAFLHG+L E++YM +
Sbjct: 1006 QGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYMSL 1065

Query: 1010 PPGIK-----SNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKK 1064
            P G       S     VC+L KSLYGLKQASR+WY++L+SV    ++IQ+ +D+++FVK 
Sbjct: 1066 PQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMFVKV 1125

Query: 1065 TSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSKLGIS 1124
            + +S  ++LVYVDD++IA +  +    +K +L + FKIKDLG  ++FLG+E+A S  GIS
Sbjct: 1126 SCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEGIS 1185

Query: 1125 LCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLLYLNTTR 1184
            +CQRKY  +LL D G    KP S P D ++ L ++      +  SYR LVGRLLYL  TR
Sbjct: 1186 VCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITR 1245

Query: 1185 PDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWAG 1244
            PDITF    LSQFLS PT  H  AA +VLRYLKG PG+                DADW  
Sbjct: 1246 PDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQ----------------DADWGT 1289

Query: 1245 CLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQWILYLLQDIH 1304
            C D+RRS++G C +LG SLI+W++KKQ  VSRSS+E+EYR+LA ATCE+ W+  LL+D+H
Sbjct: 1290 CKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLH 1349

Query: 1305 ISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVA 1364
            ++      L+CDN+SALH+A NPVFHERTKH+EIDCH VR++++AG LK L V + +Q+A
Sbjct: 1350 VTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGNQLA 1409

Query: 1365 DFFTKALLPKPFNILLSKM 1383
            D  TK L P PF+ LL ++
Sbjct: 1410 DILTKPLHPGPFHSLLKRI 1428


>gb|AAF79879.1| T7N9.5 [Arabidopsis thaliana]
          Length = 1436

 Score =  940 bits (2430), Expect = 0.0
 Identities = 554/1450 (38%), Positives = 779/1450 (53%), Gaps = 169/1450 (11%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            SL  KNKLGF++G +  P  DD     W RCN +V                         
Sbjct: 90   SLDAKNKLGFVDGSLLRPSVDDSTFRIWSRCNSMV------------------------- 124

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
             ++L  R+          L   +  L+QG   +  YFT+ K LWE+LA+ +       + 
Sbjct: 125  -NNLPRRYQ---------LEQAVMTLQQGKLDLSTYFTKKKTLWEQLANTKS----RSVK 170

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNN 183
             C C+  K         +++QFL GL+D F+ +R+Q+  + P P LN++Y+++ Q+ES  
Sbjct: 171  KCDCDQVKELLEEAETSRVIQFLMGLSDDFNTIRSQIFNMKPRPGLNEIYNMLDQDESQR 230

Query: 184  -ASLSSLSVSDDSSIQINASDVRKFQGR----GKNPSQPKPTRLCTFSNRTNHTVDFCYL 238
                ++ SV   S        V   Q        N  +PK    CT  NR  HTVD CY 
Sbjct: 231  LVGFAAKSVPSPSPAAFQTQGVLNDQNTILLAQGNFKKPK----CTHCNRIGHTVDKCYK 286

Query: 239  KHGYPNVNKAQPRVNAVTHEDVD--AGTSSSIGQGSSTSSNAG---FSQEQLVQLASLLQ 293
             HGYP      PR    T+      A T     Q   T S  G    S + + QL S L 
Sbjct: 287  VHGYP---PGHPRAKENTYVGSTNLASTDQIETQAPPTMSATGHETMSNDHIQQLISYLS 343

Query: 294  QANLVVPASSSSQASSNHISANPLISTTISAPESSSAGIIPKPSY--------------- 338
               L  P+ +S    +   S+NP+ S +    ++ ++   P PS                
Sbjct: 344  -TKLQSPSITSCFDKAIASSSNPVPSISQITDKAIASSSNPVPSISQITGTFFSLYDSTY 402

Query: 339  ------------------WLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYA 380
                              W++DSGA+ H++   + + ++  +   +V LPN   V ++  
Sbjct: 403  YEMLTSSIPIETELSLRAWVIDSGASHHVTHERNLYHTYKALDRTFVRLPNGHTVKIEGT 462

Query: 381  GTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAK 440
            G +  T    L +VL+ P F  NL+SV+ L ++L   + FTS  C+IQ      M+G   
Sbjct: 463  GFIQLTDALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGS 522

Query: 441  QLDGLYKYT-------PSSCSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGH 493
            Q+  LY           SS    SV SSV ++S                   +WH RLGH
Sbjct: 523  QVGNLYILNLDKSLVDVSSFPGKSVCSSVKNES------------------EMWHKRLGH 564

Query: 494  LSHQRLHSMS--LLYPNIISSNNKDVCDLCHFAKHKHLPFNSSISHASTNFELLHLDIWG 551
             S  ++ ++S  L+ P    + +   C +CH +K KHLPF S        FEL+H+D WG
Sbjct: 565  PSFAKIDTLSDVLMLPKQKINKDSSHCHVCHLSKQKHLPFKSVNHIREKAFELVHIDTWG 624

Query: 552  PLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFITMIQTQFHITPKFIRTD 611
            P S+ +V  +RYFLTIVDD SR  W+ LLK K++V T   +F+ M++TQ+H     +R+D
Sbjct: 625  PFSVPTVDSYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSD 684

Query: 612  NGPEFMLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYA 671
            N  E   +  +A  GI     C ETP+QN  VERKHQH+LNV RAL+FQS +P  +W   
Sbjct: 685  NAHELKFNELFAKEGIKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDC 744

Query: 672  ILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKVFGCLCYASTLQSHRTKLQPRARK 731
            +L AVFLINR+ +P+++N++PY  L    P  +  K FGCLCY ST    RTK  PRA+ 
Sbjct: 745  VLTAVFLINRLLSPVINNETPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKA 804

Query: 732  SIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPYPHTSLSTTPNWEYFSSSNFSDV 791
             IFLGY  G+KG+ L DI++  + +SRHV F+E   P              F+SSN +D 
Sbjct: 805  CIFLGYPMGYKGYKLLDIETYSVSISRHVIFYEDIFP--------------FASSNITDA 850

Query: 792  SNQPTP-INSPAIIDDILPPSPPINPPPP-----PPIPVVSPASRTSTRQTTTPSYLQDY 845
            +    P I  PA  +D   P    +   P         +  P+   STRQ   PS+LQD+
Sbjct: 851  AKDFFPHIYLPAPNNDEHLPLVQSSSDAPHNHDESSSMIFVPSEPKSTRQRKLPSHLQDF 910

Query: 846  VCNN-----IHTSPYPINNYISHHNLSNNYSSFVMSLHTTTEPKSYAEASKHDCWKQAMQ 900
             C N       TSPYP+ NYIS+  LS  + +F+  +  T  P+ Y+EA     W  AM 
Sbjct: 911  HCYNNTPTTTKTSPYPLTNYISYSYLSEPFGAFINIITATKLPQKYSEARLDKVWNDAMG 970

Query: 901  VELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSIERHKARLVAKGYNQIEGLDY 960
             E+ A  +TGTW + DLP+    +GC+WI  +K+ ADGSIERHKARLVAKGY Q EG+D+
Sbjct: 971  KEISAFVRTGTWSICDLPAGKVAVGCKWIITIKFLADGSIERHKARLVAKGYTQQEGIDF 1030

Query: 961  FDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDLQEDVYMLIPPGIKSNKPNQ 1020
            F+T+SPVAK+ T++++++L+    W+LHQLD++NA L+GDL+E++YM +PPG    +  +
Sbjct: 1031 FNTFSPVAKMVTVKVLLSLAPKMKWYLHQLDISNALLNGDLEEEIYMKLPPGYSEIQGQE 1090

Query: 1021 VCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTSSSFTILLVYVDDII 1080
            V    K                              DH+LFVK     F ++LVYVDDI+
Sbjct: 1091 VSPNAK---------------------------CHGDHTLFVKAQDGFFLVVLVYVDDIL 1123

Query: 1081 IAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADSGT 1140
            IA  +      + S L + F+++DLG+ K+FLGIE+A +  GISLCQRKY LDLLA S  
Sbjct: 1124 IASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLCQRKYVLDLLASSDF 1183

Query: 1141 IDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLLYLNTTRPDITFITQQLSQFLSQ 1200
             D KP S P + + KL +D+     D   YRR++G+L YL  TRPDI F   +L+Q+ S 
Sbjct: 1184 SDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPDINFAVSKLAQYSSA 1243

Query: 1201 PTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWAGCLDTRRSISGQCFFLG 1260
            PT  H  A  ++LRYLKG  G+GLF+  +++ +L+GFSD+DW  C DTRR ++G   F+G
Sbjct: 1244 PTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVG 1303

Query: 1261 NSLISWRTKKQITVSRSSSEAEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSA 1320
            NSL+SWR+KKQ  VS SS+EAEYRA++ AT EL W+ Y+L    I       LYCDN++A
Sbjct: 1304 NSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWLGYILTAFKIPFTHPAYLYCDNEAA 1363

Query: 1321 LHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILL 1380
            LHIA N VFHERTKH+E DCH VRE ++AGILK + V + +Q+AD  TK L PKPF    
Sbjct: 1364 LHIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRTDNQLADTLTKPLYPKPFRENN 1423

Query: 1381 SKMGLINIYQ 1390
            SK+GL+NIY+
Sbjct: 1424 SKLGLLNIYE 1433


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score =  930 bits (2403), Expect = 0.0
 Identities = 550/1468 (37%), Positives = 806/1468 (54%), Gaps = 116/1468 (7%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            +L  K K GFING I  P  D+ +   W+  N ++  W+  S+   +  T+ F   A ++
Sbjct: 59   ALQAKRKTGFINGSISKPPLDNPDYENWQAVNSMIVGWIRASIEPKVKSTVTFISDAHQL 118

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W +L++RFS  +++R+  +++ +   +Q  + V+DY+  +  LWEE   ++PI  C C  
Sbjct: 119  WSELKQRFSVGNKVRVHQIKAQLAACRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKC-G 177

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLND-QFSIVRTQVLLLDPLPSLNKVYSLVVQEESN 182
             C C A+      R E++I QF+ GL+D +F  +   ++ +DP PSL ++YS VV+EE  
Sbjct: 178  LCTCGATLEPSKEREEEKIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQR 237

Query: 183  NASLSSLSVSDDSSIQINASDVRKFQGRGKNPSQPKPTR--LCTFSNRTNHTVDFCYLKH 240
             AS+        +   +         GR  +       R  LC+   R+ H    C+   
Sbjct: 238  LASVQIREQQQSAIGFLTRQSEVTADGRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIV 297

Query: 241  GYPNVNKAQPRVNAVTHEDVDAGTSSSIGQG--SSTSSNAGFSQEQLVQLASLLQQANLV 298
            G+P+      R N           SSS G+G  SS S+N+G  + Q+   A+    +NL 
Sbjct: 298  GFPDW--WTERTNG------GGRGSSSRGRGGRSSGSNNSGRGRGQVT--AAHATTSNL- 346

Query: 299  VPASSSSQASSNHISA-NPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFS 357
               SS  + + + +     +I    +      +G + K    +LD+GA+ H++  LS  +
Sbjct: 347  ---SSFPEFTPDQLRVITQMIQNKNNGTSDKLSGKM-KLGDVILDTGASHHMTGQLSLLT 402

Query: 358  SFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESLSYS 417
            +   IP   V   +         GT   +    LS+VLY PA   +LISV+KL + +   
Sbjct: 403  NIVTIPSCSVGFADDRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCL 462

Query: 418  LHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISCNS 477
              FT   C++QD  S  +IG  ++ DG+Y  T +                   AT + + 
Sbjct: 463  ALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDA-------------------ATTTVHK 503

Query: 478  SSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDVCDLCHFAKHKHLPFNSSISH 537
                  +ALWH RLGH S   L S+ L   +  S +++  CD+C  AK     F  S + 
Sbjct: 504  VDVTTDHALWHQRLGHPSFSVLSSLPLFSGSSCSVSSRS-CDVCFRAKQTREVFPDSSNK 562

Query: 538  ASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFITMI 597
            ++  F L+H D+WGP  + S  G  YFLTIVDD SR +W  LL +K+EV + + NF+   
Sbjct: 563  STDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYT 622

Query: 598  QTQFHITPKFIRTDNGPEFM-LSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRA 656
            + QF  + K IR+DNG EFM LS+++   GI+HQ SCV TPQQNGRVERKH+HILNV RA
Sbjct: 623  EKQFGKSVKIIRSDNGTEFMCLSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHILNVSRA 682

Query: 657  LLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKVFGCLCYAS 716
            LLFQ+ LP  FW  A++ A +LINR P+ I +  SPY +LH   P  +  +VFG  CYA 
Sbjct: 683  LLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELLHGCKPDYDQLRVFGSACYAH 742

Query: 717  TLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPYP------ 770
             +   + K   R+R  IF+GY  G KG+ +YD+ + E  VSR V F E   PY       
Sbjct: 743  RVTRDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYATNEGDT 802

Query: 771  -HTSLSTTP-----NWEYFSS-----SNFSDVSNQP--------------TPINSPAIID 805
             +T   T P     +W  F++     S+ + +S+ P              TP + P  +D
Sbjct: 803  IYTPPVTCPITYDEDWLPFTTLEDRGSDENSLSDPPVCVTDVSESDTEHDTPQSLPTPVD 862

Query: 806  DILPPSPPINPPPPP--------PIPVVSPASRTST------------RQTTTPSYLQDY 845
            D L PS  + P   P        P   VSP  + +T            RQ    + L+DY
Sbjct: 863  DPLSPSTSVTPTQTPTNSSSSTSPSTNVSPPQQDTTPIIENTPPRQGKRQVQQLARLKDY 922

Query: 846  VCNNIHTSP----------------------YPINNYISHHNLSNNYSSFVMSLHTTTEP 883
            +  N   +P                      YP+ +YI     S  +  F+ ++    EP
Sbjct: 923  ILYNASCTPNTPHVLSPSTSQSSSSIQGNSQYPLTDYIFDECFSAGHKVFLAAITANDEP 982

Query: 884  KSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSIERH 943
            K + EA K   W  AM  E+ ALE   TW +VDLP+    IG +W+YK K++ADG++ER+
Sbjct: 983  KHFKEAVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERY 1042

Query: 944  KARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDLQE 1003
            KARLV +G NQIEG DY +T++PV K+TT+R ++ L + + W ++Q+DV+NAFLHGDL+E
Sbjct: 1043 KARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEE 1102

Query: 1004 DVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVK 1063
            +VYM +PPG + + P++VC+L+KSLYGLKQA R W++KL+  L    +IQ   D+S F  
Sbjct: 1103 EVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSY 1162

Query: 1064 KTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSKLGI 1123
                    +LVYVDD+II G+        K  L   F +KDLG+LKYFLGIEV+    GI
Sbjct: 1163 SCKGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGPDGI 1222

Query: 1124 SLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLLYLNTT 1183
             L QRKY LD+++DSGT+ ++P  TP + +  L  D  P   D   +RRLVGRLLYL  T
Sbjct: 1223 FLSQRKYALDIISDSGTLGARPAYTPLEQNHHLASDDGPLLQDPKPFRRLVGRLLYLLHT 1282

Query: 1184 RPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWA 1243
            RP++++    LSQF+  P +AH  AA+R++RYLKG PG+G+    N  + L+ + D+D+ 
Sbjct: 1283 RPELSYSVHVLSQFMQAPREAHLEAAMRIVRYLKGSPGQGILLSSNKDLTLEVYCDSDFQ 1342

Query: 1244 GCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQWILYLLQDI 1303
             C  TRRS+S     LG S ISW+TKKQ TVS SS+EAEYRA++ A  E++W+  LL+++
Sbjct: 1343 SCPLTRRSLSAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKEL 1402

Query: 1304 HISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQV 1363
             I+      L+CD+++A+ IAANPVFHERTKH+E DCH VR+ V+ GI+    V + +Q+
Sbjct: 1403 GITLAAPTRLFCDSKAAISIAANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQL 1462

Query: 1364 ADFFTKALLPKPFNILLSKMGLINIYQP 1391
            AD FTKAL    F  L+SK+G+ N++ P
Sbjct: 1463 ADIFTKALGRNQFIYLMSKLGIQNLHTP 1490


>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
            gi|7268152|emb|CAB78488.1| retrovirus-related like
            polyprotein [Arabidopsis thaliana] gi|7488175|pir||G71406
            probable retrovirus-related polyprotein - Arabidopsis
            thaliana
          Length = 1489

 Score =  918 bits (2373), Expect = 0.0
 Identities = 551/1537 (35%), Positives = 808/1537 (51%), Gaps = 269/1537 (17%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            +L  +NKLGFING I  P  D  +  AW RCN +V +WL+NSV   I Q++++  T   +
Sbjct: 67   ALNVRNKLGFINGTITKPPEDHRDFGAWSRCNDIVSTWLMNSVDKKIGQSLLYIATVQGI 126

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W++L  RF + D  RI ++   ++ ++QGS  +  Y+T +  LWEE  ++  +P C+C  
Sbjct: 127  WNNLLSRFKQDDAPRIFDIEQKLSKIEQGSMDISTYYTALLTLWEEHRNYVELPVCTCGR 186

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNN 183
             C C+A+   +  +   ++ +FL  LN+ F   R  +L+L P+P++ + +++V Q+E   
Sbjct: 187  -CECDAAVKWEHLQQRSRVTKFLKELNEGFDQTRRHILMLKPIPTIKEAFNMVTQDERQR 245

Query: 184  ASLSSLSVSDDSSIQINASDVRKFQGR---GKNPSQPKPTRLCTFSNRTNHTVDFCYLKH 240
             ++  L+  D  + Q N S + + +       N  +P    +CT   +  HT+  CY  H
Sbjct: 246  -NVKPLTRVDSVAFQ-NTSMINEDENAYVAAYNTVRPNQKPICTHCGKVGHTIQKCYKVH 303

Query: 241  GYPNVNK-------------------------------AQPRVNAVTHEDVDAGTSSSIG 269
            GYP   K                               AQP  N++   +V A   +  G
Sbjct: 304  GYPPGMKTGNTGYTYKPNPQLHVQPRMPMMPQPRMQFPAQPYTNSMQKANVVAQVYAETG 363

Query: 270  -------------------------QGSSTSSNAGFSQEQLVQLASLLQ-QANLVVPASS 303
                                      G +  S   F+ +Q+ Q+ S  Q Q  +  PA+S
Sbjct: 364  AYPSEGYSQAPMMNPYGSYPMPHITHGGNNLSLQDFTPQQIEQMISQFQAQVQVPEPAAS 423

Query: 304  SSQASSNHISANPLISTT---ISAPESSSAGIIPKPSY---------------------- 338
            SS  S       PL + +     A  S+S  IIP PS                       
Sbjct: 424  SSNPS-------PLATVSEHGFMALTSTSGTIIPFPSTSLKYENNDLKFQNHTLSALQKF 476

Query: 339  -----WLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSH 393
                 W++DSGA+ H+  +L+ F                   L   +GTV  T    L +
Sbjct: 477  LPSDAWIIDSGASSHVCSDLAMFRE-----------------LKSVSGTVHITQKLILHN 519

Query: 394  VLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSC 453
            VL+ P F  NL+SV+ L +++S S HF    C+IQ+     MIG  +    LY     + 
Sbjct: 520  VLHVPDFKFNLMSVSSLVKTISCSAHFYVDCCLIQELSQGLMIGRGRLYHNLYILETENT 579

Query: 454  SSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSN 513
            S     S+ +  +C    ++       +    LWH RLGH S   L  +           
Sbjct: 580  SP----STSTPAACLFTGSV-------LNDGHLWHQRLGHPSSVVLQKL----------- 617

Query: 514  NKDVCDLCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSR 573
                         K L + S  + AS  F+L+HLDIWGP SI S+ G RYFLT+VDD +R
Sbjct: 618  -------------KRLAYISHNNLASNPFDLVHLDIWGPFSIESIEGFRYFLTVVDDCTR 664

Query: 574  FLWVILLKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFMLSTFYASHGIIHQKSC 633
              WV +L++K +VS+    FI ++ TQF+   K IR+DN PE   +     HG++H  SC
Sbjct: 665  TTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAPELGFTEIVKEHGMLHHFSC 724

Query: 634  VETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPY 693
              TPQQN  VERKHQHILNV RALLFQS +P  +WS  +  AVFLINR+P+P+L+N+SPY
Sbjct: 725  AYTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSPLLNNKSPY 784

Query: 694  FVLHHQLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSRE 753
             ++ ++ P  +L K FGCLC+ ST    RTK  PRAR  +FLGY SG+KG+ + D++S  
Sbjct: 785  ELILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYKVLDLESHS 844

Query: 754  IFVSRHVTFHETFLPYPHTSLSTTPNWEYFSSSNFSDVSNQPTPIN----SPAIIDDILP 809
            + VSR+V F E   P+  TS       + F +S    +   P P++     P I +D L 
Sbjct: 845  VTVSRNVVFKEHVFPF-KTSELLNKAVDMFPNS----ILPLPAPLHFVETMPLIDEDSLI 899

Query: 810  PSPPIN-------PPPPPPIP-VVSPASRTST--------------RQTTTPSYLQDYVC 847
            P+   +             +P ++ P+S T T              R T  PSYL +Y C
Sbjct: 900  PTTTDSRTADNHASSSSSALPSIIPPSSNTETQDIDSNAVPITRSKRTTRAPSYLSEYHC 959

Query: 848  NNI----------------------------HTSPYPINNYISHHNLSNNYSSFVMSLHT 879
            + +                             T+PYPI+  +S+   +    S++ + +T
Sbjct: 960  SLVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIFAYNT 1019

Query: 880  TTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGS 939
             TEPK++++A K + W +    ELQA+E   TW +  LP +   +GC+W++ +KY+ DG+
Sbjct: 1020 ETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYNPDGT 1079

Query: 940  IERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHG 999
            +ER+KARLVA+G+ Q EG+D+ DT+SPVAKLT+ ++++ L++I  W L Q+DV++AFLHG
Sbjct: 1080 VERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDAFLHG 1139

Query: 1000 DLQEDVYMLIPPGIKSN-----KPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQA 1054
            DL E+++M +P G          PN VC+L KS+YGLKQASR+WY++             
Sbjct: 1140 DLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKR------------- 1186

Query: 1055 SSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGI 1114
                          F   LVY+DDI+IA ++  E   +K++L + FKIKDLG  ++FLG+
Sbjct: 1187 --------------FVAALVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARFFLGL 1232

Query: 1115 EVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLV 1174
                                      +  KP S P D ++ L +D      +  +YR+L+
Sbjct: 1233 --------------------------LGCKPSSIPMDPTLHLVRDMGTPLPNPTAYRKLI 1266

Query: 1175 GRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINL 1234
            GRLLYL  TRPDIT+   QLSQF+S P+  H  AA +VLRY+K  PG+GL +  +  I L
Sbjct: 1267 GRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSADYEICL 1326

Query: 1235 QGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQ 1294
             GFSDADWA C DTRRSISG C +LG SLISW++KKQ   SRSS+E+EYR++A ATCE+ 
Sbjct: 1327 NGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCEII 1386

Query: 1295 WILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKL 1354
            W+  LL+D+HI       L+CDN+SALH + NPVFHERTKH+EIDCH VR++++AG LK 
Sbjct: 1387 WLQQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNLKA 1446

Query: 1355 LPVSSQDQVADFFTKALLPKPFNILLSKMGLINIYQP 1391
            L V +++Q AD  TKAL P PF+ LL +M L +++ P
Sbjct: 1447 LHVPTENQHADILTKALHPGPFHHLLRQMSLSSLFLP 1483


>gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|25301686|pir||F96610
            probable polyprotein T8L23.26 [imported] - Arabidopsis
            thaliana
          Length = 1468

 Score =  872 bits (2252), Expect = 0.0
 Identities = 519/1471 (35%), Positives = 795/1471 (53%), Gaps = 139/1471 (9%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            +L ++ K GF++G IP P     +   W   N L+ SW+  ++   +   I   D A ++
Sbjct: 53   ALRSRKKFGFLDGTIPQPLDGSPDLEDWLTINALLVSWMKMTIDSELLTNISHRDVARDL 112

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W  +++RFS  +  +   +++ +   KQ   +V  Y+ ++  +W+ + S+RP+  C C  
Sbjct: 113  WEQIRKRFSVSNGPKNQKMKADLATCKQEGMTVEGYYGKLNKIWDNINSYRPLRICKCGR 172

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLND-QFSIVRTQVLLLDPLPSLNKVYSLVVQEES- 181
             C C      + +R +D + Q+L GLN+ +F  +R+ +    PLP L +VY++V QEE  
Sbjct: 173  -CICNLGTDQEKYREDDMVHQYLYGLNETKFHTIRSSLTSRVPLPGLEEVYNIVRQEEDM 231

Query: 182  -NNASLSSLSVSDDSSIQINASDVRK------FQGRGKNPSQPKPTRLCTFSNRTNHTVD 234
             NN S      S++    + A  V+          +  N  + +  +LCT  NR  H+ +
Sbjct: 232  VNNRS------SNEERTDVTAFAVQMRPRSEVISEKFANSEKLQNKKLCTHCNRGGHSPE 285

Query: 235  FCYLKHGYPNVNKAQPRVNAVTHEDVDAGTSSSIGQGS-STSSNAGFSQEQLVQLASL-- 291
             C++  GYP     +PR  +      ++  S+S G+G      N G  +   V +     
Sbjct: 286  NCFVLIGYPEWWGDRPRGKS------NSNGSTSRGRGRFGPGFNGGQPRPTYVNVVMTGP 339

Query: 292  ---LQQANLVVPASSSSQASSNHISA--------NPLISTTISAPESSSAGIIPKPSYWL 340
                +  N V+  S     S              N   S   S    + +G     + W+
Sbjct: 340  FPSSEHVNRVITDSDRDAVSGLTDEQWRGVVKLLNAGRSDNKSNAHETQSGTCSLFTSWI 399

Query: 341  LDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAF 400
            LD+GA+ H++ NL   S    + PV + L +    +    GTV   S+  L  V Y    
Sbjct: 400  LDTGASHHMTGNLELLSDMRSMSPVLIILADGNKRVAVSEGTVRLGSHLILKSVFYVKEL 459

Query: 401  THNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFS 460
              +LISV ++ +           HC+ + T  +  IG  K+ +G      S C      +
Sbjct: 460  ESDLISVGQMMDE---------NHCVDRTTRMVTRIG--KRENG------SFCFRGMENA 502

Query: 461  SVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNK---DV 517
            +  H S                   LWH RLGH S +    ++LL   ++SS  +   +V
Sbjct: 503  AAVHTSVKAPFD-------------LWHRRLGHASDK---IVNLLPRELLSSGKEILENV 546

Query: 518  CDLCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWV 577
            CD C  AK     F  S + +  +F+L+H D+WGP    S  G RYFLTIVDD+SR +WV
Sbjct: 547  CDTCMRAKQTRDTFPLSDNRSMDSFQLIHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWV 606

Query: 578  ILLKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFMLSTFYASH-GIIHQKSCVET 636
             L+  K+E   H+ +FI +++ QF    K +R+DNG EF+    Y  H GI H+ SCV T
Sbjct: 607  YLMTDKSETQKHLKDFIALVERQFDTEIKIVRSDNGTEFLCMREYFLHKGIAHETSCVGT 666

Query: 637  PQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVL 696
            P QNGRVERKH+HILN+ RAL FQS LP  FW   IL A +LINR P+ +L  +SPY +L
Sbjct: 667  PHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYEML 726

Query: 697  HHQLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFV 756
            +   P  +  +VFG LCYA        K   R+R+ +F+GY  G KG+ L+D++ ++ FV
Sbjct: 727  YKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKFFV 786

Query: 757  SRHVTFHETFLPY---------------------------PHT-------------SLST 776
            SR V F ET  PY                           P T             +++T
Sbjct: 787  SRDVIFQETEFPYSKMSCNEEDERVLVDCVGPPFIEEAIGPRTIIGRNIGEATVGPNVAT 846

Query: 777  TP-----NWEYFSSSNFSDVSN-QPTPINSPAIIDDILPPSPPINPPPPPPIPVVSPASR 830
             P     N E  S S F  +S+  P   +S     D+     P++   P PI +     R
Sbjct: 847  GPIIPEINQESSSPSEFVSLSSLDPFLASSTVQTADL-----PLSSTTPAPIQL-----R 896

Query: 831  TSTRQTTTPSYLQDYVCNNI----------HTSPYPINNYISHHNLSNNYSSFVMSLHTT 880
             S+RQT  P  L+++V N +           +S YPI  Y+  H  ++++ +F+ ++   
Sbjct: 897  RSSRQTQKPMKLKNFVTNTVSVESISPEASSSSLYPIEKYVDCHRFTSSHKAFLAAVTAG 956

Query: 881  TEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSI 940
             EP +Y EA     W++AM  E+++L    T+ +V+LP   + +G +W+YK+KY +DG+I
Sbjct: 957  MEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAI 1016

Query: 941  ERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGD 1000
            ER+KARLV  G  Q EG+DY +T++PVAK++T+RL + +++  +WH+HQ+DV+NAFLHGD
Sbjct: 1017 ERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGD 1076

Query: 1001 LQEDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSL 1060
            L+E+VYM +P G + + P++VC+L KSLYGLKQA R W+ KL+S L  + + Q+ SD+SL
Sbjct: 1077 LKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSL 1136

Query: 1061 FVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSK 1120
            F       F  +LVYVDD+II+G         KS L++ F +KDLG LKYFLGIEV+ + 
Sbjct: 1137 FSYNNDGIFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNA 1196

Query: 1121 LGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLLYL 1180
             G  L QRKY LD++++ G + ++P + P + + KL   +SP  +D   YRRLVGRL+YL
Sbjct: 1197 QGFYLSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYL 1256

Query: 1181 NTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDA 1240
              TRP++++    L+QF+  P Q H  AA+RV+RYLK  PG+G+     S++ + G+ D+
Sbjct: 1257 VVTRPELSYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDS 1316

Query: 1241 DWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQWILYLL 1300
            D+A C  TRRS++G    LG++ ISW+TKKQ TVSRSS+EAEYRA+A  T EL W+  +L
Sbjct: 1317 DYAACPLTRRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVL 1376

Query: 1301 QDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQ 1360
             D+ +S  +   ++ D++SA+ ++ NPV HERTKH+E+DCH +R+ +  GI+    V S 
Sbjct: 1377 YDLGVSHVQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSH 1436

Query: 1361 DQVADFFTKALLPKPFNILLSKMGLINIYQP 1391
             Q+AD  TKAL  K     L K+G+++++ P
Sbjct: 1437 KQLADILTKALGEKEVRYFLRKLGILDVHAP 1467


>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score =  815 bits (2106), Expect = 0.0
 Identities = 514/1412 (36%), Positives = 757/1412 (53%), Gaps = 102/1412 (7%)

Query: 8    KNKLGFINGVIPIP----DADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            K   G+++G   +P    + D ++   WE  N  + +W+ N V  SI   +  Y+TA EV
Sbjct: 35   KKMWGYVSGTYVVPKNTEEGDTVSIDTWEANNAKIITWINNYVEHSIGTQLAKYETAKEV 94

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W  LQ  F++ +  +   L + I  L Q + S+ ++++ M  LW++LA    +   +C  
Sbjct: 95   WDHLQRLFTQSNFAKQYQLENDIRALHQKNMSIQEFYSAMTDLWDQLALTESVELKAC-- 152

Query: 124  PCRCEASKVAKIHRNEDQ-IMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESN 182
                     A I R E Q ++QFLT L   F  +R  +L   PLPS++ V S ++ EE  
Sbjct: 153  --------GAYIERREQQRLVQFLTALRSDFEGLRGSILHRSPLPSVDSVVSELLAEEIR 204

Query: 183  NASLSSLSVSDDSSIQINASDVRKFQGRGKNPSQPKPTRLCTFSNRTNHTVDFCYLKHGY 242
              S S   +   S+  + A   + F      P        C+F  +  H    C      
Sbjct: 205  LQSYSEKGILSASNPSVLAVPSKPFSNHQNKPYTRVGFDECSFCKQKGHWKAQC------ 258

Query: 243  PNVNKAQPRVNAVTHEDVDAGTSSSIGQGSSTSSNAGFSQEQLVQLASLLQQANLVVPAS 302
                   P++     +   A  S S  Q ++  S  G+        A++    ++  P +
Sbjct: 259  -------PKLR----QQNQAWKSGSQSQSNAHRSPQGYKPPHH-NTAAVASPGSITDPNT 306

Query: 303  SSSQASSNHISANP--LISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSSFY 360
             + Q     +S  P  + +++I     SS+GI    S W+LDSGA+ H+S + S F+S  
Sbjct: 307  LAEQFQK-FLSLQPQAMSASSIGQLPHSSSGI--SHSEWVLDSGASHHMSPDSSSFTSVS 363

Query: 361  RIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESLSYSLHF 420
             +  + V   + T + +   G+V  T +  L +V   P    NL S+ ++C+S  Y + F
Sbjct: 364  PLSSIPVMTADGTPMPLAGVGSV-VTLHLSLPNVYLIPKLKLNLASIGQICDSGDYLVMF 422

Query: 421  TSAHCIIQDTMSLKMIGLAKQLDGLYKY----TPSSCSSNSVFSSVSHKSCNVVATISCN 476
            + + C +QD  S K+IG  ++ +GLY       P   ++ +V  S    S          
Sbjct: 423  SGSFCCVQDLQSQKLIGTGRRENGLYILDELKVPVVVAATTVDLSFFRLSL--------- 473

Query: 477  SSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDVCDL-----CHFAKHKHLPF 531
            SSSS     LWH RLGH+S  RL  ++    +  +  N   CD+     C  AK   LPF
Sbjct: 474  SSSSF---YLWHSRLGHVSSSRLRFLA----STGALGNLKTCDISDCSGCKLAKFSALPF 526

Query: 532  NSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVI 591
            N S S +S+ F+L+H D+WGP  +++  G RY+++ +DDH+R+ WV L+K ++E      
Sbjct: 527  NRSTSVSSSPFDLIHSDVWGPSPVSTKGGSRYYVSFIDDHTRYCWVYLMKHRSEFFEIYA 586

Query: 592  NFITMIQTQFHITPKFIRTDNGPEFMLSTF---YASHGIIHQKSCVETPQQNGRVERKHQ 648
             F  +I+TQ     K  R D G E+  + F    A  G IHQ SC +TP+QNG  ERKH+
Sbjct: 587  AFRALIKTQHSAVIKCFRCDLGGEYTSNKFCQMLALDGTIHQTSCTDTPEQNGVAERKHR 646

Query: 649  HILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKV 708
            HI+   R+LL  + +   FW  A+L AV LIN +P+      SP+  L+  +P  + F+V
Sbjct: 647  HIVETARSLLLSAFVLSEFWGEAVLTAVSLINTIPSSHSSGLSPFEKLYGHVPDYSSFRV 706

Query: 709  FGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTF--HETF 766
            FGC  +       R KL  R+   +FLGY  G KG+  +D  +++++VS HV F  H  F
Sbjct: 707  FGCTYFVLHPHVERNKLSSRSAICVFLGYGEGKKGYRCFDPITQKLYVSHHVVFLEHIPF 766

Query: 767  LPYPHTSLSTTPN----WEYFSSSNFSDVSNQPTPI--NSPAIIDDILPPSPPIN---PP 817
               P T+ S T +     + FS  + +D S     I  ++ A    +L  +P  +     
Sbjct: 767  FSIPSTTHSLTKSDLIHIDPFSEDSGNDTSPYVRSICTHNSAGTGTLLSGTPEASFSSTA 826

Query: 818  PPPPIPVVSPASRTSTR---QTTTPSYLQDYVCNNIHTSPYPINNYISHHNLSNNYSSFV 874
            P     +V P  R S R    T  P +   Y C                   S++++SF+
Sbjct: 827  PQASSEIVDPPPRQSIRIRKSTKLPDFA--YSC------------------YSSSFTSFL 866

Query: 875  MSLHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKY 934
              +H   EP SY EA      +QAM  EL AL KT TW LV LP     +GCRW+YK+K 
Sbjct: 867  AYIHCLFEPSSYKEAILDPLGQQAMDEELSALHKTDTWDLVPLPPGKSVVGCRWVYKIKT 926

Query: 935  HADGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNN 994
            ++DGSIER+KARLVAKGY+Q  G+DY +T++P+AK+TTIR +IA++SI  WH+ QLDV N
Sbjct: 927  NSDGSIERYKARLVAKGYSQQYGMDYEETFAPIAKMTTIRTLIAVASIRQWHISQLDVKN 986

Query: 995  AFLHGDLQEDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQA 1054
            AFL+GDLQE+VYM  PPGI S+    VCKL+K+LYGLKQA R W+EK + V+S   ++ +
Sbjct: 987  AFLNGDLQEEVYMAPPPGI-SHDSGYVCKLKKALYGLKQAPRAWFEKFSIVISSLGFVSS 1045

Query: 1055 SSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGI 1114
            S D +LF+K T +   IL +YVDD+II GD +   + +K+ L   F++KDLG L+YFLGI
Sbjct: 1046 SHDSALFIKCTDAGRIILSLYVDDMIITGDDIDGISVLKTELARRFEMKDLGYLRYFLGI 1105

Query: 1115 EVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLV 1174
            EVA+S  G  L Q KY  ++L  +   D+K V TP + + +          D   YR +V
Sbjct: 1106 EVAYSPRGYLLSQSKYVANILERARLTDNKTVDTPIEVNARYSSSDGLPLIDPTLYRTIV 1165

Query: 1175 GRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINL 1234
            G L+YL  T PDI +    +SQF++ PT  H  A LR+LRYL+G   + L     SS+ L
Sbjct: 1166 GSLVYLTITHPDIAYAVHVVSQFVASPTTIHWAAVLRILRYLRGTVFQSLLLSSTSSLEL 1225

Query: 1235 QGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQ 1294
            + +SDAD       R+S++G C FLG+SLISW++KKQ  VS+SS+EAEY A+AS T E+ 
Sbjct: 1226 RAYSDADHGSDPTDRKSVTGFCIFLGDSLISWKSKKQSIVSQSSTEAEYCAMASTTKEIV 1285

Query: 1295 WILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKL 1354
            W  +LL D+ IS   L  +YCDNQS++ IA N VFHERTKH+EIDCH+ R  ++ G + L
Sbjct: 1286 WSRWLLADMGISFSHLTPMYCDNQSSIQIAHNSVFHERTKHIEIDCHLTRHHLKHGTIAL 1345

Query: 1355 LPVSSQDQVADFFTKALLPKPFNILLSKMGLI 1386
              V S  Q+ADFFTKA     F  L+ K+ ++
Sbjct: 1346 PFVPSSLQIADFFTKAHSISRFCFLVGKLSML 1377


>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
            gi|9989054|gb|AAG10817.1| Putative retroelement
            polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  795 bits (2053), Expect = 0.0
 Identities = 399/869 (45%), Positives = 567/869 (64%), Gaps = 33/869 (3%)

Query: 509  IISSNNKDV--CDLCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLT 566
            I  + NK +  CD+C  AK K L + S  +     F+LLH+D+WGP S  +  G+ YFLT
Sbjct: 555  IFKTKNKGLLHCDICQRAKQKKLTYPSRHNICLAPFDLLHIDVWGPFSEPTQEGYHYFLT 614

Query: 567  IVDDHSRFLWVILLKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFMLSTFYASHG 626
            IVDDH+R  WV L+K K++V T   +FITM++TQ+    K +R+DN PE      Y   G
Sbjct: 615  IVDDHTRVTWVYLMKYKSDVLTIFPDFITMVETQYDTKVKAVRSDNAPELKFEELYRRKG 674

Query: 627  IIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPI 686
            I+   SC ETP+QN  VERKHQHILNV RALLFQS++P S+W   IL AVF+INR P+P+
Sbjct: 675  IVAYHSCPETPEQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPV 734

Query: 687  LHNQSPYFVLHHQLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTL 746
            + N++ + +L  ++P     K FGCLCYAST    R K + RAR   FLGY SG+KG+ L
Sbjct: 735  ISNKTLFEMLTKKVPDYTHLKSFGCLCYASTSPKQRHKFEDRARTCAFLGYPSGYKGYKL 794

Query: 747  YDIQSREIFVSRHVTFHETFLPYPHTSLSTTPNWEYFSSSNFSDVSNQPTPINSPAIIDD 806
             D++S  IF+SR+V F+E   P+      T P              N+ + +  P I  D
Sbjct: 795  LDLESHTIFISRNVVFYEDLFPF-----KTKP------------AENEESSVFFPHIYVD 837

Query: 807  ILPPSPPINPPPPPPIPVVS----PASRTSTRQTTTPSYLQDYVCNNIHTSP-YPINNYI 861
                    +P  P P+   S    PA + ++R +  P+YL+DY CN++ +S  +PI+  +
Sbjct: 838  ----RNDSHPSQPLPVQETSASNVPAEKQNSRVSRPPAYLKDYHCNSVTSSTDHPISEVL 893

Query: 862  SHHNLSNNYSSFVMSLHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNI 921
            S+ +LS+ Y  F+ +++   EP +YA+A +   W  AM +E+ ALE  GTW +  LP   
Sbjct: 894  SYSSLSDPYMIFINAVNKIPEPHTYAQARQIKEWCDAMGMEITALEDNGTWVVCSLPVGK 953

Query: 922  KPIGCRWIYKVKYHADGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSS 981
            K +GC+W+YK+K +ADGS+ER+KARLVAKGY Q EGLDY DT+SPVAKLTT++L+IA+++
Sbjct: 954  KAVGCKWVYKIKLNADGSLERYKARLVAKGYTQTEGLDYVDTFSPVAKLTTVKLLIAVAA 1013

Query: 982  IHNWHLHQLDVNNAFLHGDLQEDVYMLIPPGIKSNK-----PNQVCKLQKSLYGLKQASR 1036
               W L QLD++NAFL+G L E++YM +PPG    +     PN VC+L+KSLYGLKQASR
Sbjct: 1014 AKGWSLSQLDISNAFLNGSLDEEIYMTLPPGYSPRQGDSFPPNAVCRLKKSLYGLKQASR 1073

Query: 1037 KWYEKLTSVLSHHHYIQASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVL 1096
            +WY K +  L    + Q+S DH+LF +K+ +S+  +LVYVDDIIIA     E   ++  L
Sbjct: 1074 QWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLVYVDDIIIASSCDRETELLRDAL 1133

Query: 1097 DASFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKL 1156
              S K++DLG L+YFLG+E+A +  GIS+CQRKY L+LLA++G +  K  S P + + KL
Sbjct: 1134 QRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLELLAETGLLGCKSSSVPMEPNQKL 1193

Query: 1157 HQDSSPSYADIPSYRRLVGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYL 1216
             Q+      D   YR+LVG+L+YL  TRPDIT+   +L QF S P   H  A  +++ YL
Sbjct: 1194 SQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQFTSAPRVPHLKAVYKIIYYL 1253

Query: 1217 KGCPGRGLFFPRNSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSR 1276
            KG  G+GLF+  N  + L GF+D+D++ C D+R+  +G C FLG SL++W++KKQ  +S 
Sbjct: 1254 KGTVGQGLFYSANVDLKLSGFADSDFSSCSDSRKLTTGYCMFLGTSLVAWKSKKQEVISM 1313

Query: 1277 SSSEAEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHL 1336
            SS+EAEY+A++ A  E+ W+ +LL+D+ I   +  VLYCDN +A+HIA NPVFHERTKH+
Sbjct: 1314 SSAEAEYKAMSMAVREMMWLRFLLEDLWIDVSEASVLYCDNTAAIHIANNPVFHERTKHI 1373

Query: 1337 EIDCHIVREKVQAGILKLLPVSSQDQVAD 1365
            E D H +REK+  G+++ L V +++Q+AD
Sbjct: 1374 ERDYHHIREKIILGLIRTLHVRTENQLAD 1402



 Score =  198 bits (503), Expect = 1e-48
 Identities = 138/472 (29%), Positives = 223/472 (47%), Gaps = 28/472 (5%)

Query: 4   SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
           +L  KNK+ FI+G  P P+  +     W RCN +V+SW++NSV+  I  +I+ +D A ++
Sbjct: 86  ALDAKNKIAFIDGSCPRPEEGNHLLRIWSRCNSMVKSWILNSVNREIYGSILSFDDAAQI 145

Query: 64  WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
           W+DL  RF   +  R   L   I +L+QGS ++  Y+T +K L + L        C C  
Sbjct: 146 WNDLHNRFHMTNLPRTFQLVQQIQDLRQGSMNLSTYYTTLKTLRDNLDGAEASVPCHCCK 205

Query: 124 PCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEE--- 180
              CE+   AK + N  +I++FL GLN+++SI+R Q+++  PLP L +VY+++ Q++   
Sbjct: 206 KSTCESQIFAKSNVNRGRIIKFLAGLNEKYSIIRGQIIMKKPLPDLAEVYNILDQDDSQR 265

Query: 181 --SNNASLSSLSVS-DDSSIQINASDVRKFQGRGKNPSQPKPTR-LCTFSNRTNHTVDFC 236
             SNN + ++  V+ DD      AS     Q       Q K  + +C+    T HT + C
Sbjct: 266 QFSNNVASAAFQVTKDDVQPGALASSSNMPQPGMLGAVQKKDKKSICSHYGYTGHTSERC 325

Query: 237 YLKHGYP-----NVNKAQPRVNAVTHEDVDAGTSSSIGQGSSTSSNAGFSQEQLVQLASL 291
           Y  HGYP       +  +    A          S+   Q +  S N     E L+   S 
Sbjct: 326 YKLHGYPVGWKKGKSFYEKIAQASQSSQAPKPNSAVTAQVTGNSQNTPAGLESLIGNMSK 385

Query: 292 LQQANLVVPASSSSQASSNHISANPLIST--------TISAPESSSAGIIP------KPS 337
            Q  NL+   SS  Q +S  ++  P+ ++        T S+   S  GI+          
Sbjct: 386 DQIQNLIALFSSQLQPASPVLNTAPMSTSHNNDPSGITFSSSTFSFIGILTVSETEMTHG 445

Query: 338 YWLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYS 397
            W++DSGA  H+      F +       +V+LP  T + V   G ++  ++  L +VLY 
Sbjct: 446 TWIVDSGATHHVCHVKDMFLNLDTSVQHHVNLPTGTTIRVGGVGNIAVNADLILKNVLYI 505

Query: 398 PAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIG--LAKQLDGLYK 447
           P F  NL+SV+ L   +   + F    C++ D      IG  L   + G++K
Sbjct: 506 PEFRLNLLSVSALTTDIGARVVFDPTCCVVHDLTKGSTIGSDLLTDVLGIFK 557


>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
          Length = 1358

 Score =  790 bits (2040), Expect = 0.0
 Identities = 493/1396 (35%), Positives = 742/1396 (52%), Gaps = 120/1396 (8%)

Query: 22   DADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEVWHDLQERFSKVDRIRIAN 81
            + D   +A WE+ +  + S L  S+   +      + T + VW   +  ++  D  R  +
Sbjct: 56   EEDAKAKAQWEKVDAQLCSLLWRSIDFKLMPLFRPFQTCYTVWEKARALYTN-DISRFYD 114

Query: 82   LRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIHPCRCEASKVAKIHRNEDQ 141
            + S + NLK+    +  Y  +++A+ EE  +  P+              +  + HR    
Sbjct: 115  VISRLTNLKKQESDMSTYLGQVQAVMEEFDTLMPVTT----------NVEKQQEHRQTLF 164

Query: 142  IMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNNASLSSLSVSDDSSIQINA 201
            ++  L GL      VR Q+L    +P++++++S +++  +  +     S + DSSI  + 
Sbjct: 165  LVLTLAGLPPDHDSVRDQILASPTVPTIDELFSRLLRLAAPPSHKVVSSPTVDSSILASQ 224

Query: 202  SDVRK----FQGRGKNPSQPKPTRLCTFSNRTNHTVDFCYLKHGYPNVNK--AQPRVNAV 255
            +  ++     + R       KP   C+  ++  HT D CY+ HG P           N  
Sbjct: 225  TFEKRTYQSMENRRGGGRFGKPRSKCSHCHKPGHTRDICYILHGPPPSYDPIVLKEYNEF 284

Query: 256  THEDVDAGTSSSIGQGSST---SSNAGFSQ---EQLVQLASLLQQANLVVPASSSSQASS 309
                    TS  +  G+     S+NA  +Q   ++ +Q  +  Q +  VV  +    + +
Sbjct: 285  LRNRASKQTSPPVAYGAQPNQPSNNAHIAQTEYDEFLQYRANKQTSPQVVSVAQPDVSVA 344

Query: 310  NHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSSF-YRIPPVYVS 368
             +  A    S+T+                W++DSGA++HIS N S  S   Y      ++
Sbjct: 345  GNSFACVSQSSTLGT--------------WVMDSGASDHISGNKSLLSDIVYSQSLPAIT 390

Query: 369  LPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQ 428
            L N      +  G     S+  L  VLY P    NL SV++L ++L  S+ F     ++Q
Sbjct: 391  LANGIQTKPKGVGKAKPLSSVTLDSVLYVPGSPFNLASVSRLTKALHCSITFFDDFFLMQ 450

Query: 429  DTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWH 488
            D  + +MIG   +  GLY  T    SSNS+       +C++             S  L H
Sbjct: 451  DRSTGQMIGTGHESQGLYYLT----SSNSL------AACSIT-----------DSPDLIH 489

Query: 489  FRLGHLSHQRLHSMSLLYPNIISSNNKDVCDLCHFAKHKHLPFNSSISHASTN-FELLHL 547
             RLGH S  +L  M    P++ S +  D C+ C   KH    F+ S    S + F L+H 
Sbjct: 490  KRLGHSSLSKLQKM---VPSLSSLSTLD-CESCQLGKHTRATFSRSTEGRSESIFSLVHS 545

Query: 548  DIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFITMIQTQFHITPKF 607
            DIWGP  ++S  G RYF++ +DD+S+  WV L+K ++E+ +   +F   IQ QF ++ + 
Sbjct: 546  DIWGPSRVSSTLGFRYFVSFIDDYSKCTWVFLMKDRSELFSIFKSFFAEIQNQFGVSIRT 605

Query: 608  IRTDNGPEFMLSTF--YASH-GIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLP 664
             R+DN  E++ S F  + +H GIIHQ +C  TPQQNG  ERK++H++   R LL +S +P
Sbjct: 606  FRSDNALEYLSSQFREFMTHQGIIHQTTCPYTPQQNGVAERKNRHLIETARTLLLESNVP 665

Query: 665  PSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLF----KVFGCLCYASTLQS 720
              FW  A+L + +LINR+P+  + NQ P+ +L    P  +L+    +VFG  C+   L  
Sbjct: 666  LRFWGDAVLTSCYLINRMPSSSIQNQVPHSIL---FPQSHLYPIPPRVFGSTCFVHNLAP 722

Query: 721  HRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPYPHTSLSTTPNW 780
             + KL PRA K +FLGY    KG+  Y        +S  VTF E+               
Sbjct: 723  GKDKLAPRALKCVFLGYSRVQKGYRCYSHDLHRYLMSADVTFFES--------------Q 768

Query: 781  EYFSSSNFSDVSNQPTPINSPAIIDDILPPSPPINPPPPPPIPVVSPASRTSTRQTTTPS 840
             Y++SSN  DVS              +LP       P   P+P    ++ TST     P 
Sbjct: 769  PYYTSSNHPDVSM-------------VLPI------PQVLPVPTFVESTVTSTSPVVVPP 809

Query: 841  YLQDYVCNNIHTSPYPINNYISHHNLSNNYSSFVMSLHTTTEPKSY--AEASKHDCWKQA 898
             L        H  P P    +   +      +    L   ++P +    EA  H  W+QA
Sbjct: 810  LL------TYHRRPRP--TLVPDDSCHAPDPAPTADLPPPSQPLALQKGEALSHSGWRQA 861

Query: 899  MQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSIERHKARLVAKGYNQIEGL 958
            M  E+ AL K+GTW+LV LP+    +GCRW+Y VK   DG ++R KARLVAKGY QI GL
Sbjct: 862  MVDEMSALHKSGTWELVSLPAGKSTVGCRWVYAVKIGPDGQVDRLKARLVAKGYTQIFGL 921

Query: 959  DYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDLQEDVYMLIPPGI--KSN 1016
            DY DT++PVAK+ ++RL ++++++ +W LHQLD+ NAFLHGDL+E+VYM  PPG   +  
Sbjct: 922  DYSDTFAPVAKIASVRLFLSMAAVRHWPLHQLDIKNAFLHGDLEEEVYMEQPPGFVAQGE 981

Query: 1017 KPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKKTSSSFTI-LLVY 1075
              + VC+L++SLYGLKQ+ R W+ K ++V+      ++ +DHS+F + ++ S  I L+VY
Sbjct: 982  SSSLVCRLRRSLYGLKQSPRAWFGKFSTVIQEFGMTRSGADHSVFYRHSAPSRCIYLVVY 1041

Query: 1076 VDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLL 1135
            VDDI+I G+     T +K  L   F+ KDLG+LKYFLGIEVA S+ GI + QRKY LD+L
Sbjct: 1042 VDDIVITGNDQDGITDLKQHLFKHFQTKDLGRLKYFLGIEVAQSRSGIVISQRKYALDIL 1101

Query: 1136 ADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLLYLNTTRPDITFITQQLS 1195
             ++G +  +PV TP D ++KL        ++   YRRLVG+L YL  TRPDI+F    +S
Sbjct: 1102 EETGMMGCRPVDTPMDPNVKLLPGQGEPLSNPERYRRLVGKLNYLTVTRPDISFPVSVVS 1161

Query: 1196 QFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDADWAGCLDTRRSISGQ 1255
            QF++ P  +H  A +R+LRY+K  PG+GL F      ++ G++DADWAG    RRS SG 
Sbjct: 1162 QFMTSPCDSHWEAVVRILRYIKSAPGKGLLFEDQGHEHIIGYTDADWAGSPSDRRSTSGY 1221

Query: 1256 CFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQWILYLLQDIHISCPKLPVLYC 1315
            C  +G +L+SW++KKQ  V+RSS+E+EYRA+A+ATCEL WI  LL ++         L C
Sbjct: 1222 CVLVGGNLVSWKSKKQNVVARSSAESEYRAMATATCELVWIKQLLGELKFGKVDKMELVC 1281

Query: 1316 DNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVSSQDQVADFFTKALLPKP 1375
            DNQ+ALHIA+NPVFHERTKH+EIDCH VREK+ +G +    V S DQ+AD FTK+L    
Sbjct: 1282 DNQAALHIASNPVFHERTKHIEIDCHFVREKILSGDIVTKFVKSNDQLADIFTKSLTCPR 1341

Query: 1376 FNILLSKMGLINIYQP 1391
             N + +K+G  ++Y P
Sbjct: 1342 INYICNKLGTYDLYAP 1357


>emb|CAA72989.1| unnamed protein product [Brassica oleracea] gi|7488558|pir||T14517
            hypothetical protein 1 - wild cabbage transposon Melmoth
          Length = 1131

 Score =  751 bits (1939), Expect = 0.0
 Identities = 429/1136 (37%), Positives = 639/1136 (55%), Gaps = 81/1136 (7%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            +L  KNK+GF++G +  PD  D     W RCN +V+SWL+NSVS  I ++I+  + A ++
Sbjct: 47   ALDAKNKIGFVDGTLTRPDTSDPTFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDAADI 106

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W DL  RF   +  R  NL   I +LKQGS S+ DY+T +K LW+ L S           
Sbjct: 107  WRDLHGRFHMTNLPRTFNLTQEIQDLKQGSMSLSDYYTTLKTLWDNLESVDEPDT----- 161

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNN 183
            PC C  ++  +   +  +I++FL GLND ++I+R Q+++   LPSL +VY+++ Q++S  
Sbjct: 162  PCVCGNAEKLQKKVDRAKIVKFLAGLNDSYAIIRRQIIMKKVLPSLVEVYNILDQDDSQK 221

Query: 184  ASLSSLS-----VSDDSSIQINASDVRKFQGRGKNPSQPKPTRLCTFSNRTNHTVDFCYL 238
               ++++     VS++    +  + +   Q  G N  +P    +C+F NR  H  + CY 
Sbjct: 222  GFSTAITPAAFNVSENVPPPMAEAGICYVQ-TGPNKGRP----ICSFCNRVGHIAERCYK 276

Query: 239  KHGYP----NVNKAQPRVNAVTH-EDVDAGTSSS---IGQGSSTSSN--AGFSQEQLVQL 288
            KHG+P    +  K+Q   + +   + V A  S S    GQ   T  +     S+EQL Q 
Sbjct: 277  KHGFPPGFVSKYKSQSSGDRLQKPKQVAAQVSFSPPNSGQSPMTMDHLVGNHSKEQLQQF 336

Query: 289  ASLL--QQANLVV---PASSSSQASSNH-ISANPLISTTISAPESSSAGIIPKPSYWLLD 342
             +L   Q  N+ +    ASSS Q   N  IS NP     I     S   +  +   W++D
Sbjct: 337  IALFSSQLPNVTMGSNEASSSKQPMDNSGISFNPTTLVFIGLLTVSRHTLANET--WIID 394

Query: 343  SGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTH 402
            SGA  H+  + S ++S        V+LPN   V +   G V    +  L +VLY P F  
Sbjct: 395  SGATHHVCHDRSMYTSIDITTTSNVNLPNGMIVKISGVGIVQLNEHITLHNVLYIPEFRL 454

Query: 403  NLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSV 462
            NL+S++ L   +   + F  + C IQD      IG  +++  LY     S          
Sbjct: 455  NLLSISSLTSDIGSQVIFDVSSCAIQDPTKGWTIGQGRRVANLYVLDVKS---------- 504

Query: 463  SHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDV-CDLC 521
            S    N V  IS           LWH RLGH S+ RL  +S         N  D  C +C
Sbjct: 505  SPMKINAVVDIS-----------LWHKRLGHPSYTRLDKISEALGTTKHKNKGDAHCHVC 553

Query: 522  HFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLK 581
            H AK K L ++S     + +F+LLH+D+WGP S+ ++ G++YFLTIVDDHSR  W+ LL+
Sbjct: 554  HLAKQKKLSYSSQNHICTASFQLLHVDVWGPFSVETLEGYKYFLTIVDDHSRATWIYLLQ 613

Query: 582  SKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFMLSTFYASHGIIHQKSCVETPQQNG 641
            SK++V      F+  I+TQ++   K +R DN PE   +  +   GI+   SC ET +QN 
Sbjct: 614  SKSDVLHIFPTFVNQIETQYNTKIKSVRRDNAPELSFTELFKEKGIVSYHSCPETLEQNS 673

Query: 642  RVERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLP 701
             +ERKHQH+LNV RAL+FQS++P  +W   +L A FLINR P+P+L N+SPY VL  + P
Sbjct: 674  VLERKHQHLLNVARALMFQSQVPLQYWGDCVLTAAFLINRTPSPLLANKSPYEVLMGKAP 733

Query: 702  ALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVT 761
              +  + FGCLCY ST    R K  PR+R  +FLGY SG+KG+ L D++S +I++SR+VT
Sbjct: 734  QYDQLRTFGCLCYGSTSPKQRHKFMPRSRACVFLGYPSGYKGYKLLDLESNKIYISRNVT 793

Query: 762  FHETFLPYPHTSLSTTPNWEYFSSSNFSDVSNQPTPINSPAIIDDILPPSPPINPPPPPP 821
            FHE   P          +  +F           P  +  P+       PSP I+     P
Sbjct: 794  FHEDIFPMAKHQKMDESSLHFF-----------PPKVTVPS------APSPNIS---SSP 833

Query: 822  IPVVSPASRTSTRQTTTPSYLQDYVCNNIHTSPYPINNYISHHNLSNNYSSFVMSLHTTT 881
               +SP  + S RQ T P++L+D+ C ++H S YPI++ +S+  +S+++ +++ S+    
Sbjct: 834  FSTLSP--QISKRQRTVPAHLKDFHCYSVHDSAYPISSTLSYSQISSHHLAYINSITNIP 891

Query: 882  EPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSIE 941
             P+SYAE  +   W ++   EL A+E+  TW +V LP   K IGCRW++ +K++ADG++E
Sbjct: 892  IPQSYAEVRQSKEWTESADKELDAMEENDTWDVVPLPKGKKAIGCRWVHTLKFNADGTLE 951

Query: 942  RHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDL 1001
            R K+RLV KGY Q EGLDY +T+SPVAK+ T++L++ + +   W LHQLD++NAFL+G+L
Sbjct: 952  RRKSRLVGKGYTQKEGLDYIETFSPVAKMATVKLLLKVGASKKWFLHQLDISNAFLNGEL 1011

Query: 1002 QEDVYMLIPPGIKSNK----PNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSD 1057
             E++YM +P G    K    PN VCKL+KS+YGLKQASR+W++K ++ L    + +A  D
Sbjct: 1012 DEEIYMKLPEGYAERKGDLPPNAVCKLKKSIYGLKQASRQWFKKFSTSLFQLGFQKAHGD 1071

Query: 1058 HSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLG 1113
            H+LFV++T + F  +LVYVDDI+IA         +KS L + FK++DLG LKYF G
Sbjct: 1072 HTLFVRQTENDFVAVLVYVDDIVIASTDDAVAVKLKSDLKSFFKLRDLGSLKYFFG 1127


>emb|CAB77940.1| putative polyprotein [Arabidopsis thaliana] gi|4325355|gb|AAD17352.1|
            contains similarity to retrovirus-related polyproteins
            [Arabidopsis thaliana] gi|25301678|pir||C85077 probable
            polyprotein [imported] - Arabidopsis thaliana
          Length = 1366

 Score =  731 bits (1887), Expect = 0.0
 Identities = 478/1434 (33%), Positives = 724/1434 (50%), Gaps = 221/1434 (15%)

Query: 47   SDSIAQTIVFYDTAFEVWHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKAL 106
            S  +   +V++  A  +W  L+ R  + +  +I ++++ ++ L QGS  +  Y+T +   
Sbjct: 64   SGDLGSGMVYFYDAHLLWLKLEGRSRQSNLSKIYSVQNQLDRLHQGSLDLSAYYTRLTVT 123

Query: 107  --------WEELASHRPIPNCSCIHPCRCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRT 158
                    WEEL +   +P+C+C   C C ++        +  I++FL  LN+ F   R 
Sbjct: 124  FIRSQCLSWEELKNFEELPSCTC-GKCTCGSNDRWIQLYEKHNIVRFLMRLNESFIQARR 182

Query: 159  QVLLLDPLPSLNKVYSLVVQEESNNASLSSLSVSDDSSIQINASDVRK--FQGRGKNPSQ 216
            Q+L++DPLP    +Y+ + Q++    S +S+  ++    Q + +  +   F  +GK  S+
Sbjct: 183  QILMMDPLPEFTNLYNFISQDDQQR-SFNSMPTTEKPVFQASITQQKPKFFNQQGK--SR 239

Query: 217  PKPTRLCTFSNRTNHTVDFCYLKHGYPN---------VNKAQPRVNAVTHEDV------- 260
            P    LCT+     HT   CY  HGYP           N  + R     H  +       
Sbjct: 240  P----LCTYCGLLGHTNARCYKLHGYPPGYKVPVGTCYNNDKSRGQPYPHNGIHMSHLIT 295

Query: 261  -DAGTSSSIGQGSSTSSNAGFSQEQLVQLASLLQQ--ANLVVPASSSSQASSNHISANPL 317
             +  + + I Q ++ +  A ++Q       + + Q  A   + +  SS ++ N  S +P 
Sbjct: 296  YNGNSYAPIVQANNNAPYALYNQAYNGNSYAPMAQNFAGNHIISDGSSMSAGNVTSESPT 355

Query: 318  ISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSSFYRIPPVYVSLPNKTCVLV 377
            ++ +++   +S  G +   S+        E ++  ++  ++  +  P  V  P     + 
Sbjct: 356  VNHSVNMM-NSGRGFLGSSSH------GREQVNQMVTQLNTQLQGSPYQVIRPP---TVS 405

Query: 378  QYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIG 437
            Q  G++S            SP  +H             Y   F     I Q+T SL    
Sbjct: 406  QNHGSISAQG--------MSPIPSH-------------YISAFEPCLIIPQNTWSLDT-- 442

Query: 438  LAKQLDGLYKYTPSSCSSNSVFSSVSHK-------------SCNVVATISCNSSSS---- 480
                     + +   C   S+F +V H              S N+  T+  N        
Sbjct: 443  ---------RASCHICCDLSLFCNVYHIDHTNITLPNNIKISINIAETVKLNDRLILHLV 493

Query: 481  --IPSNALWHF----RLGHLSHQRLHSMS--LLYPNIISSNNKDVCDLCHFAKHKHLPFN 532
              +PS   +HF    RLGH S  R+ ++S  L  P  +S  +   C +CH +K K L F 
Sbjct: 494  FYVPS---FHFNLISRLGHPSMSRVQALSSNLHIPQKLSEFH---CKICHLSKQKCLSFV 547

Query: 533  SSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVIN 592
            S+       F L+H+D                                   ++V+T    
Sbjct: 548  SNNKIYEEPFPLIHID-----------------------------------SDVTTIFPE 572

Query: 593  FITMIQTQFHITPKFIRTDNGPEFMLSTFYASHGIIHQKSCVETPQQNGRVERKHQHILN 652
            F+ ++QTQF  T K IR+DN PE       A+ GI H  SC  TPQQN  VER HQH+LN
Sbjct: 573  FLKLVQTQFGCTVKSIRSDNAPELQFKDLLATFGIFHYHSCAYTPQQNYVVERNHQHLLN 632

Query: 653  VGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKVFGCL 712
            V R+L FQS +P ++W   +  A FLINR PTP L ++SPY VL+ +LP  N  +VF CL
Sbjct: 633  VARSLYFQSNIPLAYWPECVSTAAFLINRTPTPNLEHKSPYEVLYKKLPDYNSLRVFCCL 692

Query: 713  CYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPYPHT 772
            CYAST Q  R K   RA   +F+GY+SGFKG+ + D++S  + V+R+V FHET  P+   
Sbjct: 693  CYASTHQHERHKFTERATSCVFIGYESGFKGYKILDLESNTVSVTRNVVFHETIFPF--I 750

Query: 773  SLSTTPNWEYFSSSNFSDVSNQPTPINSPAIID-------DILPPSPPINPPPPPPIPVV 825
               +T N  +F  S       Q    N   I D       ++ P   P   P       +
Sbjct: 751  DKHSTQNVSFFDDSVLPISEKQKE--NRFQIYDYFNVLNLEVCPVIEPTTVPAHTHTRSL 808

Query: 826  SPASRTST---------------RQTTTPSYLQDYVCNNI--------HTSPYPINNYIS 862
            +P S T T               ++T  PSYL  Y C+N+        H + + +++++S
Sbjct: 809  APLSTTVTNDQFGNDMDNTLMPRKETRAPSYLSQYHCSNVLKEPSSSLHGTAHSLSSHLS 868

Query: 863  HHNLSNNYSSFVMSLHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIK 922
            +  LSN Y  F  ++    EP ++ EA+    W  AM VEL AL  T T ++  L    +
Sbjct: 869  YDKLSNEYRLFCFAIIAEKEPTTFKEAALLQKWLDAMNVELDALVSTSTREICSLHDGKR 928

Query: 923  PIGCRWIYKVKYHADGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSI 982
             IGC+W++K+KY +DG+IER+KARLVA GY Q EG+DY DT+SP+AKLT++RL++AL++I
Sbjct: 929  AIGCKWVFKIKYKSDGTIERYKARLVANGYTQQEGVDYIDTFSPIAKLTSVRLILALAAI 988

Query: 983  HNWHLHQLDVNNAFLHGDLQEDVYMLIPPGIKSNK-----PNQVCKLQKSLYGLKQASRK 1037
            HNW + Q+DV NAFLHGD +E++YM +P G    K        VC+L KSLYGLKQASR+
Sbjct: 989  HNWSISQMDVTNAFLHGDFEEEIYMQLPQGYTPRKGELLPKRPVCRLVKSLYGLKQASRQ 1048

Query: 1038 WYEKLTSVLSHHHYIQASSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLD 1097
            W+ K + VL  + ++Q+  D +LFV+    +F  LLVYVDDI++  +  +    +K +L 
Sbjct: 1049 WFHKFSGVLIQNGFMQSLFDPTLFVRVREDTFLALLVYVDDIMLVSNKDSAVIEVKQILA 1108

Query: 1098 ASFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLH 1157
              FK+KDLGQ +YFLG+E+A SK GIS+ QRKY L+LL + G +  KPV TP + ++KL 
Sbjct: 1109 KEFKLKDLGQKRYFLGLEIARSKEGISISQRKYALELLEEFGFLGCKPVPTPMELNLKLS 1168

Query: 1158 QDSSPSYADIPSYRRLVGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLK 1217
            Q+      D   YR+L+GRL+YL  TRPDI F   +L+Q++S P + H  AA R+LRYLK
Sbjct: 1169 QEDGALLLDASHYRKLIGRLVYLTVTRPDICFAVNKLNQYMSAPREPHLMAARRILRYLK 1228

Query: 1218 GCPGRGLFFPRNSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRS 1277
              PG+G+F+P +S++  + F+DADW+ C ++  SIS         ++ W         + 
Sbjct: 1229 NDPGQGVFYPASSTLTFRAFADADWSNCPESSISIS---------IVFWL--------KL 1271

Query: 1278 SSEAEYRALASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLE 1337
            S+EA             W++       +S P    +Y D++SALHIA N VFHE TK+  
Sbjct: 1272 STEA-------------WLV-------LSLPDTIFVYYDDESALHIAKNSVFHESTKNFL 1311

Query: 1338 IDCHIVREKVQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIYQP 1391
             D H+VREKV  G +K L V ++  + D  TK L    FN LLSKMGL ++Y P
Sbjct: 1312 HDIHVVREKVAVGFIKTLHVDTEHNIVDLLTKPLTALRFNYLLSKMGLHHLYSP 1365


>gb|AAK43485.1| polyprotein, putative [Arabidopsis thaliana]
          Length = 1459

 Score =  714 bits (1842), Expect = 0.0
 Identities = 483/1467 (32%), Positives = 721/1467 (48%), Gaps = 169/1467 (11%)

Query: 15   NGVIPIPDADDLNRAA--------WERCNHLVQSWLINSVSDSIAQTIVFYDTAFEVWHD 66
            N V+  P+   +N           W+R + L+ S LI ++S ++   +     + ++W  
Sbjct: 60   NSVVIPPETTTINSVVSANPSFTLWKRQDKLIFSALIGAISPAVQSLVSRATNSSQIWST 119

Query: 67   LQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIHPCR 126
            L   ++K     I  LR  I  L +G+K++ +Y        ++LA               
Sbjct: 120  LNNTYAKPSYGHIKQLRQQIQRLTKGTKTIDEYVQSHTTRLDQLAI-------------- 165

Query: 127  CEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNNASL 186
                 + K   +E+Q+   L GL +++  V  Q+   D  P++ +++  ++  ES   S 
Sbjct: 166  -----LGKPMEHEEQVEHILKGLPEEYKTVVDQIEGKDNTPTITEIHERLINHESKLLS- 219

Query: 187  SSLSVSDDSSIQINASDVRKFQGRGKNPSQPKPTRLCTFSNRTNHTVDFCYLKHGYPNVN 246
              +  S    +  NA   R F             +  T +N TN                
Sbjct: 220  DEVPPSSSFPMSANAVQQRNFNNNCNQNQHKNRYQGNTHNNNTN---------------T 264

Query: 247  KAQPRVNAVTHEDVDAGTSSSIGQGSSTSSNAGFSQEQLVQLASLLQQANLVVPASSSSQ 306
             +QP     T+      T           S  G S  +  QL ++       +PASSS  
Sbjct: 265  NSQPS----TYNKSGQRTFKPYLGKCQICSVQGHSARRCPQLQAMQ------LPASSS-- 312

Query: 307  ASSNHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSSFYRIPP-V 365
            A S      P  +  I +P +++         WLLDSGA  HI+ +L+  S         
Sbjct: 313  AHSPFTPWQPRANLAIGSPYAANP--------WLLDSGATHHITSDLNALSLHQPYNGGE 364

Query: 366  YVSLPNKTCVLVQYAGTVSFTS---NFYLSHVLYSPAFTHNLISVAKLCESLSYSLHFTS 422
            YV + + T + ++  G+    S   +  L  VLY P    NLISV +LC +   S+ F  
Sbjct: 365  YVMIADGTGLTIKQTGSTFLPSQNRDLALHKVLYVPDIRKNLISVYRLCNTNQVSVEFFP 424

Query: 423  AHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISCNSSSSIP 482
            A   ++D  +  ++   +  D LY++  ++  + ++F+S S K+     T+S        
Sbjct: 425  ASFQVKDLNTGTLLLQGRTKDDLYEWPVTNPPATALFTSPSPKT-----TLSS------- 472

Query: 483  SNALWHFRLGHLSHQRLHSMSLLY--PNIISSNNKDVCDLCHFAKHKHLPFNSSISHAST 540
                WH RLGH S   L+++   +  P  ++S+NK  C  C   K   LPF +S  H+S+
Sbjct: 473  ----WHSRLGHPSASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFATSSIHSSS 528

Query: 541  NFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFITMIQTQ 600
              E +  D+W    I S   ++Y+L +VD ++R+ W+  L+ K++V    I F  +++ +
Sbjct: 529  PLEYIFTDVWTS-PIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVENR 587

Query: 601  FHITPKFIRTDNGPEFM-LSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLF 659
            F    + + +DNG EF+ L  F  S+GI H  S   TP+ NG  ERKH+HI+  G  LL 
Sbjct: 588  FQAKIRTLYSDNGGEFIALRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLT 647

Query: 660  QSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKVFGCLCYASTLQ 719
            Q+ +P  +W+YA   AV+LINR+PTP+L  QSP+  L    P     +VFGCLC+     
Sbjct: 648  QASVPREYWTYAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNYQRLRVFGCLCFPWLRP 707

Query: 720  SHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPY---------- 769
              R KL+ R+++ +FLGY      +   D+ +  ++ SRHV F E+  P+          
Sbjct: 708  YTRNKLEERSKRCVFLGYSLTQTAYLCLDVDNNRLYTSRHVMFDESTYPFAASIREQSQS 767

Query: 770  -----PHTSLSTTPNWEYFSSS---------------------NFSDVS----NQPTPIN 799
                 P +S S++P    F  S                     N S VS      PTP +
Sbjct: 768  SLVTPPESSSSSSPANSGFPCSVLRLQSPPASSPETPSPPQQQNDSPVSPRQTGSPTPSH 827

Query: 800  SPAIIDDILPPSPPI-------------------NP------PPPPPIPVVSPAS----R 830
               + D  L PSP +                   NP      P P P P  +P+S    R
Sbjct: 828  HSQVRDSTLSPSPSVSNSEPTAPHENGPEPEAQSNPNSPFIGPLPNPNPETNPSSSIEQR 887

Query: 831  TSTRQTTT---PSYLQDYVCNNIHTSPYPINNYISHHNLSNNYS--------SFVMSLHT 879
               + TTT   P+       +N  + P P NN+       NN +        +  ++   
Sbjct: 888  PVDKSTTTALPPNQTTIAATSNSRSQP-PKNNHQMKTRSKNNITKPKTKTSLTVALTQPH 946

Query: 880  TTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGS 939
             +EP +  +A K   W+ AM  E  A ++  TW LV        +GCRW++K+KY  +G 
Sbjct: 947  LSEPNTVTQALKDKKWRFAMSDEFDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGL 1006

Query: 940  IERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHG 999
            I+++KARLVAKG+NQ  G+DY +T+SPV K TTIR+V+ ++   NW L QLDVNNAFL G
Sbjct: 1007 IDKYKARLVAKGFNQQYGVDYAETFSPVIKATTIRVVLDVAVKKNWPLKQLDVNNAFLQG 1066

Query: 1000 DLQEDVYMLIPPG-IKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDH 1058
             L E+VYM  PPG +  ++P+ VC+L+K++YGLKQA R WY +L   L +  ++ + +D 
Sbjct: 1067 TLTEEVYMAQPPGFVDKDRPSHVCRLRKAIYGLKQAPRAWYMELKQHLLNIGFVNSLADT 1126

Query: 1059 SLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAH 1118
            SLF+    ++   LLVYVDDII+ G      + + S L   F IKD   L YFLGIE   
Sbjct: 1127 SLFIYSHGTTLLYLLVYVDDIIVTGSDHKSVSAVLSSLAERFSIKDPTDLHYFLGIEATR 1186

Query: 1119 SKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLL 1178
            +  G+ L QRKY  DLLA    +D+KPV+TP  +S KL         D   YR +VG L 
Sbjct: 1187 TNTGLHLMQRKYMTDLLAKHNMLDAKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQ 1246

Query: 1179 YLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFS 1238
            YL  TRPDI F   +LSQF+ QPT  H  AA RVLRYL G    G+F   +S I+L  FS
Sbjct: 1247 YLAFTRPDIAFAVNRLSQFMHQPTSDHWQAAKRVLRYLAGTTTHGIFLNSSSPIHLHAFS 1306

Query: 1239 DADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQWILY 1298
            DADWAG      S +    +LG + ISW +KKQ  VSRSS+E+EYRA+A+A  E++W+  
Sbjct: 1307 DADWAGDSADYVSTNAYVIYLGRNPISWSSKKQRGVSRSSTESEYRAVANAASEIRWLCS 1366

Query: 1299 LLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKLLPVS 1358
            LL ++HI  P  P ++CDN  A +I ANPVFH R KH+ +D H VR  +Q+  L++  VS
Sbjct: 1367 LLTELHIRLPHGPTIFCDNIGATYICANPVFHSRMKHIALDYHFVRGMIQSRALRVSHVS 1426

Query: 1359 SQDQVADFFTKALLPKPFNILLSKMGL 1385
            + DQ+AD  TK+L    F    SK+G+
Sbjct: 1427 TNDQLADALTKSLSRPHFLSARSKIGV 1453


>gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|37534632|ref|NP_921618.1| putative pol polyprotein
            [Oryza sativa (japonica cultivar-group)]
          Length = 1688

 Score =  696 bits (1797), Expect = 0.0
 Identities = 426/1111 (38%), Positives = 605/1111 (54%), Gaps = 73/1111 (6%)

Query: 327  SSSAGIIPKPSY-WLLDSGANEHISCNLSFFSSFYRIPP-VYVSLPNKTCVLVQYAGTVS 384
            SS + + P  S  W+LDSGA+ H+S + S+ +S   +     V   N T   V + G++S
Sbjct: 171  SSISTVTPIASQPWILDSGASFHMSFDDSWLTSCRLVKNGATVHTANGTLCKVTHQGSIS 230

Query: 385  FTSNFYLSHVLYSPAFTHNLISVAKLCESLSYSLHFTSAHCIIQDTMSLKMIGLA---KQ 441
             +  F + +V   P  + NLISV +L ++  + + F    C +QD  +  +IG     K+
Sbjct: 231  -SPQFTVPNVSLVPKLSMNLISVGQLTDTNCF-VGFDDTSCFVQDRHTGAVIGTGHRQKR 288

Query: 442  LDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISCNSSSSIPSNALWHFRLGHLSHQRLHS 501
              GLY     S  S+S          N  +  S   S++  S   WH RLGHL   RL  
Sbjct: 289  SCGLYILDSLSLPSSST---------NTPSVYSPMCSTACKSFPQWHHRLGHLCGSRL-- 337

Query: 502  MSLLYPNIISSNNKD---VCDLCHFAKHKHLPFNSSISHASTNFELLHLDIWGPLSIASV 558
             +L+   ++ S   D   VC  C   K   LP+ SS S +S  F+L+H D+WG     S 
Sbjct: 338  ATLINQGVLGSVPVDTTFVCKGCKLGKQVQLPYPSSTSRSSRPFDLVHSDVWGKSPFPSK 397

Query: 559  HGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFITMIQTQFHITPKFIRTDNGPEFML 618
             GH Y++  VDD+SR+ W+  +K ++++ +   +F  MI TQF    +  R+D+G E+M 
Sbjct: 398  GGHNYYVIFVDDYSRYTWIYFMKHRSQLISIYQSFAQMIHTQFSSAIRIFRSDSGGEYMS 457

Query: 619  STF---YASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPPSFWSYAILHA 675
            + F     S G + Q SC     QNG  ERKH+HI+   R LL  S +P  FW+ AI  A
Sbjct: 458  NAFREFLVSQGTLPQLSCPGAHAQNGVAERKHRHIIETARTLLIASFVPAHFWAEAISTA 517

Query: 676  VFLINRVPTPILHNQSPYFVLHHQLPALNLFKVFGCLCYASTLQSHRTKLQPRARKSIFL 735
            V+LIN  P+  L  +SP  VL    P  +  +VFGC CY       RTKL  ++ + +FL
Sbjct: 518  VYLINMQPSSSLQGRSPGEVLFGSPPRYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFL 577

Query: 736  GYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPYPHTSLSTTPNWEYFSSSNFSDVSNQP 795
            GY    KG+  YD  +R I +SR VTF E   P+ ++S +   + E  +S +F  +   P
Sbjct: 578  GYSLEHKGYRCYDPSARRIRISRDVTFDEN-KPFFYSSTNQPSSPE--NSISFLYLPPIP 634

Query: 796  TPINSPAIIDDILPPSPPINP--------PPPPPIPVVSPAS------------------ 829
            +P + P+    I P   PI P        PPPPP P  SP S                  
Sbjct: 635  SPESLPS--SPITPSPSPIPPSVPSPTYVPPPPPSPSPSPVSPPPSHIPASSSPPHVPST 692

Query: 830  ------------RTSTRQTTTPSY--LQDYVCNNIHTSPYPINNYISHHNL-SNNYSSFV 874
                        R      + PS   L+D  C+   +SP P  N  +   L + N   FV
Sbjct: 693  ITLDTFPFHYSRRPKIPNESQPSQPTLEDPTCSVDDSSPAPRYNLRARDALRAPNRDDFV 752

Query: 875  MSLHTTTEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKY 934
            + +    EP +Y EA     WK AM  EL ALE+T TW +V LPS+  PI C+W+YKVK 
Sbjct: 753  VGV--VFEPSTYQEAIVLPHWKLAMSEELAALERTNTWDVVPLPSHAVPITCKWVYKVKT 810

Query: 935  HADGSIERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNN 994
             +DG +ER+KARLVA+G+ Q  G DY +T++PVA +TT+R +IA+++  +W + Q+DV N
Sbjct: 811  KSDGQVERYKARLVARGFQQAHGRDYDETFAPVAHMTTVRTLIAVAATRSWTISQMDVKN 870

Query: 995  AFLHGDLQEDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQA 1054
            AFLHGDL E+VYM  PPG+++  P  V +L+++LYGLKQA R W+ + +SV+    +  +
Sbjct: 871  AFLHGDLHEEVYMHPPPGVEA-PPGHVFRLRRALYGLKQAPRAWFARFSSVVLAAGFSPS 929

Query: 1055 SSDHSLFVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGI 1114
              D +LF+  +S   T+LL+YVDD++I GD L    ++K  L   F + DLG L YFLGI
Sbjct: 930  DHDPALFIHTSSRGRTLLLLYVDDMLITGDDLEYIAFVKGKLSEQFMMSDLGPLSYFLGI 989

Query: 1115 EVAHSKLGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLV 1174
            EV  +  G  L Q +Y  DLLA SG  DS+  +TP +  ++L         D   YR LV
Sbjct: 990  EVTSTVDGYYLSQHRYIEDLLAQSGLTDSRTTTTPMELHVRLRSTDGTPLDDPSRYRHLV 1049

Query: 1175 GRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINL 1234
            G L+YL  TRPDI +    LSQF+S P   H+   LRVLRYL+G   + LF+  +S + L
Sbjct: 1050 GSLVYLTVTRPDIAYAVHILSQFVSAPISVHYGHLLRVLRYLRGTTTQCLFYAASSPLQL 1109

Query: 1235 QGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRALASATCELQ 1294
            + FSD+ WA     RRS++G C FLG SL++W++KKQ  VSRSS+EAE RALA+ T E+ 
Sbjct: 1110 RAFSDSTWASDPIDRRSVTGYCIFLGTSLLTWKSKKQTAVSRSSTEAELRALATTTSEIV 1169

Query: 1295 WILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKVQAGILKL 1354
            W+ +LL D  +SC     L CDN  A+ IA +P+ HE TKH+ +D    R   Q   + L
Sbjct: 1170 WLRWLLADFGVSCDVPTPLLCDNTGAIQIANDPIKHELTKHIGVDASFTRSHCQQSTIAL 1229

Query: 1355 LPVSSQDQVADFFTKALLPKPFNILLSKMGL 1385
              V S+ QVADFFTKA   +   + L K+ +
Sbjct: 1230 HYVPSELQVADFFTKAQTREHHRLHLLKLNV 1260


>gb|AAU89779.1| gag-pol polyprotein-like [Solanum tuberosum]
          Length = 1212

 Score =  696 bits (1795), Expect = 0.0
 Identities = 429/1280 (33%), Positives = 661/1280 (51%), Gaps = 133/1280 (10%)

Query: 8    KNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEVWHDL 67
            K   G+I+G  P P  D      W+  +  V +W++ S+   I   +  Y T   +W  L
Sbjct: 32   KELWGYIDGSDPAP-TDATKLGEWKIKDARVMTWILGSIDPLIVLNLRPYKTVKAMWDYL 90

Query: 68   QERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELAS--HRPIPNCSCIHPC 125
            Q+ +++ +  R   L   I N  QG   V DYF+  + LW E     +  IP        
Sbjct: 91   QKVYNQDNSARRFQLEYEIANYSQGGLFVQDYFSGFQNLWAEFTDIVYAKIPT------- 143

Query: 126  RCEASKVAKIHRNEDQIMQFLTGLNDQFSIVRTQVLLLDPLPSLNKVYSLVVQEESNNAS 185
              E+  V +    + +  QFL  L   F  +R+ ++  DP PSL+  +  +++EE    +
Sbjct: 144  --ESLSVIQAVHEQSKRDQFLMKLRSDFESIRSNLMNRDPSPSLDVCFRELLREEQRLVT 201

Query: 186  LSSLSVSDDSSIQINASDVRKFQGRGKNPSQPK--------------PTRLCTFSNRTNH 231
             +     +D ++   A      +G+G++ S+ +                +   +  +  H
Sbjct: 202  QNVFKKENDVTVAFAAQG----KGKGRDMSRTQCYSCKEYGHIASNCSKKFYNYCKQQGH 257

Query: 232  TVDFCYLKHGYPNVNKAQPRVNAVTHEDVDAGTSSSIGQGSSTSSNAGFSQEQLVQLASL 291
             +  C ++     +N  Q R+N  T ++      SS+GQ               V    +
Sbjct: 258  IIKECPMRPQNRRINAFQARINGSTDDN------SSLGQ---------------VLTPEM 296

Query: 292  LQQANLVVPASSSSQASSNHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISC 351
            +QQ  ++V A S+     N +++N                      +W++DSGA+ H++ 
Sbjct: 297  VQQ--MIVSAFSALGLQGNDVTSN----------------------FWIVDSGASNHMTN 332

Query: 352  NLSFFSSFYRIP-PVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKL 410
            + S   +  +   P  + + N + + +   G ++ T      +V  SP  + +LISV +L
Sbjct: 333  STSILKNVRKYQGPSQIQIANGSNLPITKVGDITPT----FKNVFVSPKLSTSLISVGQL 388

Query: 411  CESLSYSLHFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVV 470
             ++ +  ++F+   C++QD +S  +I    ++  L+                 H S   V
Sbjct: 389  VDN-NCDVNFSRNGCLVQDQVSGTIIAKGPKVGRLFPI---------------HFSIPPV 432

Query: 471  ATISCNSSSSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDV-----CDLCHFAK 525
             + +C S++S     +WH RLGH +   L  +S     ++ + NK       C  C   K
Sbjct: 433  LSFACTSTAS--KTEVWHKRLGHPNSVVLSHIS--NSGLLGNKNKFSVASIDCSTCKLGK 488

Query: 526  HKHLPFNSSISHASTNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAE 585
             K LPF +  S A+  F+++H D+WG   I S    +YF+T +DD+SRF WV  L+SK+E
Sbjct: 489  SKTLPFPNFGSRATKCFDVIHSDVWGISPIISHAHFKYFMTFIDDYSRFTWVYFLRSKSE 548

Query: 586  VSTHVINFITMIQTQFHITPKFIRTDNGPEFM---LSTFYASHGIIHQKSCVETPQQNGR 642
            V +    F+  I+TQF    K +R+D+G E+M      F    GI+ Q SC  TPQQNG 
Sbjct: 549  VFSMFKTFLAYIETQFSTCIKLLRSDSGGEYMSYEFKKFLLDKGIVSQHSCPYTPQQNGV 608

Query: 643  VERKHQHILNVGRALLFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPA 702
             ERK++H+L+V R LL +S +P  +W  A+  AV+LINR+P+ +L+ +SPYF L+HQ P 
Sbjct: 609  AERKNRHLLDVTRTLLIESSVPSKYWVEALSTAVYLINRLPSKVLNLESPYFRLYHQNPN 668

Query: 703  LNLFKVFGCLCYASTLQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTF 762
             + F  FGC+C+     S   KL  ++ K  F+GY +  KGF  YD  S +  +SR+V F
Sbjct: 669  YSDFHTFGCVCFVHLPPSQCNKLSVQSTKCAFMGYSTSQKGFICYDPCSHKFRISRNVVF 728

Query: 763  HET--FLPYPHTSLSTTPNWEYFSSSNFSDVSNQPTPINSPAIIDDILPPSPPINPPPPP 820
             E   F P      S +P         F D+S+         + +   P  P  N  PPP
Sbjct: 729  FENQYFFPTIVDLSSVSP-----LLPTFEDLSSSFKRFKPGFVYERRRPTLPYPNTDPPP 783

Query: 821  PIPVVSPASRTSTRQTTTPSYLQDYVCNNIHTSPYPINNYISHHNLSNNYSSFVMSLHTT 880
                            T P    +   N+  + P       +  + + N+  F  +L   
Sbjct: 784  E---------------TAPQLESE---NSSRSGPLEPTRRSTRVSRTPNWYGFSSTLSNI 825

Query: 881  TEPKSYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSI 940
            + P  Y++ASKH+CW++AM+ EL AL++  TW +V  PSN++PIGC+W+Y +K H+DG++
Sbjct: 826  SVPSCYSQASKHECWQKAMEEELLALKENDTWDIVSCPSNVRPIGCKWVYSIKLHSDGTL 885

Query: 941  ERHKARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGD 1000
            +R+KARLV  G  Q  G+DY +T++PVAK+TT+R +IA+++  NW L+Q DV NAFLHGD
Sbjct: 886  DRYKARLVVLGNRQEYGVDYEETFAPVAKMTTVRTIIAIAASQNWSLYQKDVKNAFLHGD 945

Query: 1001 LQEDVYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSL 1060
            L+ED+YM  PP + S+  + VCKL++SLYGLKQA R W++K  S L    +  +  D SL
Sbjct: 946  LKEDIYMKPPPDLFSSPTSDVCKLKRSLYGLKQAPRAWFDKFRSTLLQFSFELSKYDSSL 1005

Query: 1061 FVKKTSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVAHSK 1120
            F++KTS+S  +LLVYVDDIII G   +  T ++  L  SF +KDLG L YFLG+EV +  
Sbjct: 1006 FLRKTSTSCVLLLVYVDDIIITGTDSSLITCLQQQLKDSFHMKDLGTLTYFLGLEVHNVA 1065

Query: 1121 LGISLCQRKYCLDLLADSGTIDSKPVSTPSDSSIKLHQDSSPSYADIPSYRRLVGRLLYL 1180
             G+ L Q KY  DL++ +G   S  V TP + ++K  ++      D   +R+LVG L YL
Sbjct: 1066 SGVFLNQHKYTQDLISLAGLQVSSSVDTPLEMNVKYRREEGDLLPDPTIFRQLVGSLNYL 1125

Query: 1181 NTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFFPRNSSINLQGFSDA 1240
              TRPDI+F  QQ+SQF+  P   H  A   ++RYL G   RGLFFP  S I L  FSD+
Sbjct: 1126 TITRPDISFAVQQVSQFMQAPRHLHLVAVCHIIRYLLGTSTRGLFFPSGSPIRLNAFSDS 1185

Query: 1241 DWAGCLDTRRSISGQCFFLG 1260
            DWAGC DTRRS+SG C FLG
Sbjct: 1186 DWAGCPDTRRSVSGWCMFLG 1205


>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
            gi|25301695|pir||D84481 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana
          Length = 1413

 Score =  675 bits (1741), Expect = 0.0
 Identities = 414/1193 (34%), Positives = 610/1193 (50%), Gaps = 114/1193 (9%)

Query: 4    SLGTKNKLGFINGVIPIPDADDLNRAAWERCNHLVQSWLINSVSDSIAQTIVFYDTAFEV 63
            +L  K K GFING I  P  D+ +   W+  N ++  W+  S+   +  T+ F   A ++
Sbjct: 59   ALQAKRKTGFINGSISKPPLDNPDYENWQAVNSMIVGWIRASIEPKVKSTVTFICDAHQL 118

Query: 64   WHDLQERFSKVDRIRIANLRSTINNLKQGSKSVLDYFTEMKALWEELASHRPIPNCSCIH 123
            W +L++RFS  +++ +  +++ +   +Q  + V+DY+  +  LWEE   ++PI  C C  
Sbjct: 119  WSELKQRFSVGNKVHVHQIKTQLAACRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKC-G 177

Query: 124  PCRCEASKVAKIHRNEDQIMQFLTGLND-QFSIVRTQVLLLDPLPSLNKVYSLVVQEESN 182
             C C A+      R E++I QF+ GL+D +F  +   ++ +DP PSL ++YS VV+EE  
Sbjct: 178  LCTCGATLEPSKEREEEKIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQR 237

Query: 183  NASLSSLSVSDDSSIQINASDVRKFQGRGKNPSQPKPTR--LCTFSNRTNHTVDFCYLKH 240
             AS+        +   +         GR  +       R  LC+   R+ H    C+   
Sbjct: 238  LASVQIREQQQSAIGFLTRQSEVTADGRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIV 297

Query: 241  GYPNVNKAQPRVNAVTHEDVDAGTSSSIGQG--SSTSSNAGFSQEQLVQLASLLQQANLV 298
            G+P+      R N           SSS G+G  SS S+N+G  + Q+    +     +  
Sbjct: 298  GFPDW--WTERTNG------GGRGSSSRGRGGRSSGSNNSGRGRGQVTAAHATTSNLSPF 349

Query: 299  VPASSSSQASSNHISANPLISTTISAPESSSAGIIPKPSYWLLDSGANEHISCNLSFFSS 358
               +         +  N    T+         G +      +LD+GA+ H++  LS  ++
Sbjct: 350  PEFTPDQLRVITQMIQNKNNGTSDKLSGKMKLGDV------ILDTGASHHMTGQLSLLTN 403

Query: 359  FYRIPPVYVSLPNKTCVLVQYAGTVSFTSNFYLSHVLYSPAFTHNLISVAKLCESLSYSL 418
               IP   V   +         GT   +    LS+VLY PA   +LISV+KL + +    
Sbjct: 404  IVTIPSCSVGFADGRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCLA 463

Query: 419  HFTSAHCIIQDTMSLKMIGLAKQLDGLYKYTPSSCSSNSVFSSVSHKSCNVVATISCNSS 478
             FT   C++QD  S  +IG  ++ DG+Y  T +                   AT + +  
Sbjct: 464  LFTDTICVLQDRFSRTLIGTGEERDGVYYLTDA-------------------ATTTVHKV 504

Query: 479  SSIPSNALWHFRLGHLSHQRLHSMSLLYPNIISSNNKDVCDLCHFAKHKHLPFNSSISHA 538
                 +ALWH RLGH S   L S+ L   +  S +++  CD+C  AK     F  S + +
Sbjct: 505  DITTDHALWHQRLGHPSFSVLSSLPLFSGSSCSVSSRS-CDVCFRAKQTREVFPDSSNKS 563

Query: 539  STNFELLHLDIWGPLSIASVHGHRYFLTIVDDHSRFLWVILLKSKAEVSTHVINFITMIQ 598
            +  F L+H D+WGP  + S  G  YFLTIVDD SR +W  LL +K+EV + + NF+   +
Sbjct: 564  TDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTE 623

Query: 599  TQFHITPKFIRTDNGPEFM-LSTFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRAL 657
             QF  + K IR+DNG EFM LS+++   GI+HQ SCV TPQQNGRVERKH+HILNV RAL
Sbjct: 624  KQFGKSVKIIRSDNGTEFMCLSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHILNVSRAL 683

Query: 658  LFQSKLPPSFWSYAILHAVFLINRVPTPILHNQSPYFVLHHQLPALNLFKVFGCLCYAST 717
            LFQ+ LP  FW  A++ A +LINR P+ I +  SPY +LH   P  +  +VFG  CYA  
Sbjct: 684  LFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELLHGCKPDYDQLRVFGSACYAHR 743

Query: 718  LQSHRTKLQPRARKSIFLGYKSGFKGFTLYDIQSREIFVSRHVTFHETFLPY-------- 769
            +   + K   R+R  IF+GY  G KG+ +YD+ + E  VSR V F E   PY        
Sbjct: 744  VTRDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYATNEGDTI 803

Query: 770  ----------------PHTSLSTTPNWEYFSS------SNFSDVSNQ-PTPINSPAIIDD 806
                            P T+L    + E + S      +N S+   +  TP + P  +DD
Sbjct: 804  YTPPVTCPITYDEDWLPFTTLEDRGSDENYLSDPPVCVTNVSESDTEHDTPQSLPTPVDD 863

Query: 807  ILPPSPPINPPPPP--------PIPVVSPASRTST------------RQTTTPSYLQDYV 846
             L PS  + P   P        P   VSP  + +T            RQ   P+ L+DY+
Sbjct: 864  PLSPSTSVTPTQTPTNSSSSTSPSTNVSPPQQDTTPIIENTPPRQGKRQVQQPARLKDYI 923

Query: 847  CNNIHTSP----------------------YPINNYISHHNLSNNYSSFVMSLHTTTEPK 884
              N   +P                      YP+ +YIS    S  +  F+ ++    EPK
Sbjct: 924  LYNASCTPNTPHVLSPSTSQSSSSIQGNLQYPLTDYISDECFSAGHKVFLAAITANDEPK 983

Query: 885  SYAEASKHDCWKQAMQVELQALEKTGTWQLVDLPSNIKPIGCRWIYKVKYHADGSIERHK 944
             + E  K   W  AM  E+ ALE   TW +VDLP+    IG +W+YK K++ADG++ER+K
Sbjct: 984  HFKEDVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNADGTVERYK 1043

Query: 945  ARLVAKGYNQIEGLDYFDTYSPVAKLTTIRLVIALSSIHNWHLHQLDVNNAFLHGDLQED 1004
            ARLV +G NQIEG DY +T++PV K+TT+R ++ L + + W ++Q+DV+NAFLHGDL+E+
Sbjct: 1044 ARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAFLHGDLEEE 1103

Query: 1005 VYMLIPPGIKSNKPNQVCKLQKSLYGLKQASRKWYEKLTSVLSHHHYIQASSDHSLFVKK 1064
            VYM +PPG + + P++VC+L+KSLYGLKQA R W++KL+  L    +IQ   D+S F   
Sbjct: 1104 VYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGYEDYSFFSYS 1163

Query: 1065 TSSSFTILLVYVDDIIIAGDSLTEFTYIKSVLDASFKIKDLGQLKYFLGIEVA 1117
                   +LVYVDD+II G+        K  L   F +KDLG+LKYFLGIEV+
Sbjct: 1164 CKGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIEVS 1216



 Score =  191 bits (485), Expect = 1e-46
 Identities = 97/225 (43%), Positives = 146/225 (64%)

Query: 1167 IPSYRRLVGRLLYLNTTRPDITFITQQLSQFLSQPTQAHHTAALRVLRYLKGCPGRGLFF 1226
            +  ++  +GR   +        F+  ++S+    P +AH  AA+R++RYLKG PG+G+  
Sbjct: 1188 VQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGPDAPREAHLEAAMRIVRYLKGSPGQGILL 1247

Query: 1227 PRNSSINLQGFSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQITVSRSSSEAEYRAL 1286
              N  + L+ + D+D+  C  TRRS+S     LG S ISW+TKKQ TVS SS+EAEYRA+
Sbjct: 1248 SANKDLTLEVYCDSDFQSCPLTRRSLSAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAM 1307

Query: 1287 ASATCELQWILYLLQDIHISCPKLPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREK 1346
            + A  E++W+  LL+++ I+      L+CD+++A+ IAANPVFHERTKH+E DCH VR+ 
Sbjct: 1308 SVALKEIKWLNKLLKELGITLAAPTRLFCDSKAAISIAANPVFHERTKHIERDCHSVRDA 1367

Query: 1347 VQAGILKLLPVSSQDQVADFFTKALLPKPFNILLSKMGLINIYQP 1391
            V+ GI+    V + +Q+AD FTKAL    F  L+SK+G+ N++ P
Sbjct: 1368 VRDGIITTHHVRTSEQLADIFTKALGRNQFIYLMSKLGIQNLHTP 1412


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.320    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,378,843,032
Number of Sequences: 2540612
Number of extensions: 103064760
Number of successful extensions: 536819
Number of sequences better than 10.0: 2992
Number of HSP's better than 10.0 without gapping: 1873
Number of HSP's successfully gapped in prelim test: 1177
Number of HSP's that attempted gapping in prelim test: 510874
Number of HSP's gapped (non-prelim): 10289
length of query: 1391
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1250
effective length of database: 505,134,102
effective search space: 631417627500
effective search space used: 631417627500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)