BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149307.10 + phase: 0 /pseudo
(114 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 62 3e-09
emb|CAE03482.2| OSJNBa0065O17.7 [Oryza sativa (japonica cultivar... 46 2e-04
ref|XP_471543.1| OSJNBa0071G03.15 [Oryza sativa (japonica cultiv... 46 2e-04
gb|AAF63129.1| Similar to reverse transcriptase [Arabidopsis tha... 45 3e-04
gb|AAF63113.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 45 3e-04
ref|NP_175044.1| hypothetical protein [Arabidopsis thaliana] 45 3e-04
ref|XP_471041.1| OSJNBb0050O03.4 [Oryza sativa (japonica cultiva... 45 5e-04
ref|XP_472382.1| OSJNBb0118P14.10 [Oryza sativa (japonica cultiv... 42 0.003
pir||E84487 hypothetical protein At2g07670 [imported] - Arabidop... 42 0.003
gb|AAP44599.1| putative reverse transcriptase [Oryza sativa (jap... 42 0.004
ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (j... 42 0.004
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 42 0.004
emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa (japonica cultivar... 42 0.005
gb|AAX96619.1| retrotransposon protein, putative, LINE sub-class... 41 0.008
emb|CAE05820.1| OSJNBa0028M15.12 [Oryza sativa (japonica cultiva... 41 0.008
emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa (japonica cultivar... 41 0.008
gb|AAX96614.1| retrotransposon protein, putative, unclassified [... 40 0.013
emb|CAD40747.2| OSJNBa0072D21.1 [Oryza sativa (japonica cultivar... 40 0.013
emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar... 40 0.013
gb|AAR01724.1| hypothetical protein [Oryza sativa (japonica cult... 40 0.018
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 62.4 bits (150), Expect = 3e-09
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLSD 78
F FI++ L++ FTW+RG S SKLDR + +++P+ L+ SD
Sbjct: 34 FQNFINNMGLIEISPIKGFFTWFRGQ--SKSKLDRLFVQPEWLTSFPSLKLNILKRSPSD 91
Query: 79 HVHMVLRVDEENWGPRPLRMLKCWANFP 106
H ++ +NWGP+P R L CW P
Sbjct: 92 HCPLLAFSSHQNWGPKPFRFLNCWLTHP 119
>emb|CAE03482.2| OSJNBa0065O17.7 [Oryza sativa (japonica cultivar-group)]
gi|50927885|ref|XP_473470.1| OSJNBa0065O17.7 [Oryza
sativa (japonica cultivar-group)]
Length = 3331
Score = 46.2 bits (108), Expect = 2e-04
Identities = 28/91 (30%), Positives = 43/91 (46%), Gaps = 1/91 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F + ID+ L + P+ GR FTW + ++ KLDR L S + +P+C+ A S S
Sbjct: 835 FRRLIDELELRELPLDGRRFTWSNERESPTLVKLDRVLFSADWEELFPSCLLQAASSIAS 894
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
DH ++L + R W F G+
Sbjct: 895 DHCALLLHTCVTSPKAHRFRFEAFWPKFDGF 925
>ref|XP_471543.1| OSJNBa0071G03.15 [Oryza sativa (japonica cultivar-group)]
gi|38346611|emb|CAD39801.2| OSJNBa0071G03.15 [Oryza
sativa (japonica cultivar-group)]
gi|38346419|emb|CAD40206.2| OSJNBa0019J05.4 [Oryza
sativa (japonica cultivar-group)]
Length = 637
Score = 45.8 bits (107), Expect = 2e-04
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 14 HDADIFNKFIDDSFLVDFPICGRLFTWYR-GDGYSMSKLDRFLLSDNCYSTWPNCIQIAL 72
+D IFN+ I L++ P+ GR FTW + +LD S + T+PN I L
Sbjct: 102 NDIFIFNEIISSLGLLEIPLKGRRFTWSNMQQNPLLERLDWVFTSASWTLTFPNTTVIPL 161
Query: 73 QSGLSDHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
+SDHV V+++D + R W G+
Sbjct: 162 TRNISDHVPCVVKIDTKIPKSPIFRFENFWVEAEGF 197
>gb|AAF63129.1| Similar to reverse transcriptase [Arabidopsis thaliana]
Length = 602
Score = 45.4 bits (106), Expect = 3e-04
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 19 FNKFIDDSFLVDFPICGRLFTW--YRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
F + DS LVD P G +TW ++ D + KLDR + + + +S++P+ I + SG+
Sbjct: 188 FQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGV 247
Query: 77 SDHVHMVLRVDEENWGPRPLRMLKCWANF 105
SDH ++ ++ P R KC+ F
Sbjct: 248 SDHSPCIIILEN-----LPKRSKKCFRYF 271
>gb|AAF63113.1| Hypothetical protein [Arabidopsis thaliana] gi|25405137|pir||C96501
hypothetical protein F28H19.1 [imported] - Arabidopsis
thaliana
Length = 668
Score = 45.4 bits (106), Expect = 3e-04
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 19 FNKFIDDSFLVDFPICGRLFTW--YRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
F + DS LVD P G +TW ++ D + KLDR + + + +S++P+ I + SG+
Sbjct: 188 FQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGV 247
Query: 77 SDHVHMVLRVDEENWGPRPLRMLKCWANF 105
SDH ++ ++ P R KC+ F
Sbjct: 248 SDHSPCIIILEN-----LPKRSKKCFRYF 271
>ref|NP_175044.1| hypothetical protein [Arabidopsis thaliana]
Length = 626
Score = 45.4 bits (106), Expect = 3e-04
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 19 FNKFIDDSFLVDFPICGRLFTW--YRGDGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
F + DS LVD P G +TW ++ D + KLDR + + + +S++P+ I + SG+
Sbjct: 252 FQNCLRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGV 311
Query: 77 SDHVHMVLRVDEENWGPRPLRMLKCWANF 105
SDH ++ ++ P R KC+ F
Sbjct: 312 SDHSPCIIILEN-----LPKRSKKCFRYF 335
>ref|XP_471041.1| OSJNBb0050O03.4 [Oryza sativa (japonica cultivar-group)]
gi|38344107|emb|CAE01714.2| OSJNBb0050O03.4 [Oryza
sativa (japonica cultivar-group)]
Length = 1199
Score = 44.7 bits (104), Expect = 5e-04
Identities = 28/97 (28%), Positives = 45/97 (45%), Gaps = 1/97 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F + +D+ L + P GR FTW + ++ KLDR L S + +P+C+ A S S
Sbjct: 513 FRRLVDELELRELPPHGRRFTWSNERESPTLVKLDRVLFSADWEELFPSCLLQAASSIAS 572
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGYALFVRE 114
DH ++L + R W F G+ V++
Sbjct: 573 DHCALLLHTCVTSPKAHCFRFEAFWPKFDGFLQVVQD 609
>ref|XP_472382.1| OSJNBb0118P14.10 [Oryza sativa (japonica cultivar-group)]
gi|38569170|emb|CAE05360.3| OJ000315_02.5 [Oryza sativa
(japonica cultivar-group)] gi|38346150|emb|CAD40674.2|
OSJNBb0118P14.10 [Oryza sativa (japonica
cultivar-group)]
Length = 934
Score = 42.4 bits (98), Expect = 0.003
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 18 IFNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
+FN I+++ L + + G+ FTW ++ KLDR L +D +P L+
Sbjct: 617 MFNSIIENANLREMALEGKKFTWANNKQSVTLEKLDRILFNDKWEIKFPLACGRVLERIY 676
Query: 77 SDHVHMVLRVDEENW 91
SDH +++ V+ E W
Sbjct: 677 SDHTPLLINVEGEKW 691
>pir||E84487 hypothetical protein At2g07670 [imported] - Arabidopsis thaliana
Length = 913
Score = 42.4 bits (98), Expect = 0.003
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 4 RKSRGSSFRQHDADIFNKFIDDSFLVDFPICGRLFTWYRG---DGYSMSKLDRFLLSDNC 60
RK+ G+ D+ F ++I++ L+D G FTW RG + +LDR L
Sbjct: 617 RKNGGNGGLSPDSLAFGEWINELSLIDMGFKGNKFTWKRGRVESTFVAKRLDRVLCRPQT 676
Query: 61 YSTWPNCIQIALQSGLSDHVHMVLRVDEE---NWGPRPLRMLKCWANFPGY 108
W L SDH + ++++ E N RP R W G+
Sbjct: 677 RLKWQEASVTHLPFFASDHAPIYIQLEPEVRSNPLRRPFRFEAAWLTHSGF 727
>gb|AAP44599.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|34896540|ref|NP_909614.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 502
Score = 42.0 bits (97), Expect = 0.004
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 14 HDADIFNKFIDDSFLVDFPICGRLFTWYR-GDGYSMSKLDRFLLSDNCYSTWPNCIQIAL 72
+D +FN I + L++ P+ R FTW D + +LD +S + ++PN + +++
Sbjct: 2 NDIFLFNDMISNLGLIEIPLKDRSFTWSNMHDSPLLEQLDWVFISPSWLISYPNTLALSM 61
Query: 73 QSGLSDHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
+SDHV + ++V R W G+
Sbjct: 62 IKHISDHVPLKVQVQTAIPRANVCRFENFWVQHEGF 97
>ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29893671|gb|AAP06925.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 870
Score = 42.0 bits (97), Expect = 0.004
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGYS-MSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F ID L + P+ R FTW + + KLDR ++ +P+ + AL +G S
Sbjct: 168 FRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHALPTGPS 227
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
DH +VL + PR + W PG+
Sbjct: 228 DHCPLVLSNPQGPHRPRTFKFENFWTRVPGF 258
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 42.0 bits (97), Expect = 0.004
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGYS-MSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F ID L + P+ R FTW + + KLDR ++ +P+ + AL +G S
Sbjct: 168 FRAVIDRCELHEIPLQNRKFTWSNERRKATLVKLDRCFCNEEWDLAFPHHVLHALPTGPS 227
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
DH +VL + PR + W PG+
Sbjct: 228 DHYPLVLSNPQGPHRPRTFKFENFWTRVPGF 258
>emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa (japonica cultivar-group)]
gi|50926570|ref|XP_473232.1| OSJNBa0038O10.4 [Oryza
sativa (japonica cultivar-group)]
Length = 1045
Score = 41.6 bits (96), Expect = 0.005
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGY-SMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F ID L + P+ R FTW + ++ KLDR ++N + + + AL +G S
Sbjct: 168 FRATIDRCELHEIPLQNRRFTWSNERQWPTLVKLDRCFCNENWDLAFHHHVLHALPTGPS 227
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGYALFVR 113
DH +VL PR R W PG+ V+
Sbjct: 228 DHCPLVLSNPAAPRKPRTFRFENFWTCIPGFKDMVK 263
>gb|AAX96619.1| retrotransposon protein, putative, LINE sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 660
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 1 MEERKSRGSSFRQHDADIFNKFIDDSFLVDFPICGRLFTWYR-GDGYSMSKLDRFLLSDN 59
+ +R G+ +D IFN I L+D P+ GR FTW + +LD S
Sbjct: 280 VHDRNKAGADM--NDIFIFNDIISSLGLLDIPLKGRKFTWSNMQHNPLLGRLDWVFTSAP 337
Query: 60 CYSTWPNCIQIALQSGLSDHVHMVLRVDEENWGPRPLRMLKCWANFPGYALFVRE 114
+PN + L +SD V V+++D + R W G+ V++
Sbjct: 338 WTLDFPNTTVVPLTRNISDQVPCVVKIDTKIPKSPIFRFENYWVEMEGFFDIVQQ 392
>emb|CAE05820.1| OSJNBa0028M15.12 [Oryza sativa (japonica cultivar-group)]
gi|50930947|ref|XP_475001.1| OSJNBa0028M15.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1200
Score = 40.8 bits (94), Expect = 0.008
Identities = 27/68 (39%), Positives = 35/68 (50%), Gaps = 2/68 (2%)
Query: 18 IFNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
+FN ID SF + + GR FTW + KLDR L+S S +P AL GL
Sbjct: 916 LFNAVID-SFDLRVDLTGRQFTWANSLSSPTFEKLDRVLMSTEWESKYPLVSVHALDRGL 974
Query: 77 SDHVHMVL 84
SDH ++L
Sbjct: 975 SDHTPLLL 982
>emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa (japonica cultivar-group)]
gi|50928243|ref|XP_473649.1| OSJNBa0088A01.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 40.8 bits (94), Expect = 0.008
Identities = 26/91 (28%), Positives = 41/91 (44%), Gaps = 1/91 (1%)
Query: 19 FNKFIDDSFLVDFPICGRLFTWYRGDGY-SMSKLDRFLLSDNCYSTWPNCIQIALQSGLS 77
F I+ L + + R FTW + +M +LDRF ++N + + I L SG S
Sbjct: 620 FRAAINHCELKEIHLQNRKFTWTNERRHPTMVRLDRFFCNENWDLAFGHHILHTLSSGTS 679
Query: 78 DHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
DH ++L + PR + W PG+
Sbjct: 680 DHCPLLLSNPQGPQRPRTFKFENFWTKLPGF 710
>gb|AAX96614.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1427
Score = 40.0 bits (92), Expect = 0.013
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 14 HDADIFNKFIDDSFLVDFPICGRLFTWYR-GDGYSMSKLDRFLLSDNCYSTWPNCIQIAL 72
+D +FN I D LV+ P+ GR FTW + +LD F S T+P+ + L
Sbjct: 2 NDIFLFNAMISDLGLVELPLKGRAFTWSNMQHSPLLEQLDWFFTSTVWTLTFPHTLVKPL 61
Query: 73 QSGLSDHVHMVLRVDEENWGPRPLRMLKCWANFPGY 108
SDH V+++ + R W G+
Sbjct: 62 ARSTSDHTPCVVQIGTDIPKADIFRFENFWVEHNGF 97
>emb|CAD40747.2| OSJNBa0072D21.1 [Oryza sativa (japonica cultivar-group)]
gi|50923755|ref|XP_472238.1| OSJNBa0072D21.1 [Oryza
sativa (japonica cultivar-group)]
Length = 710
Score = 40.0 bits (92), Expect = 0.013
Identities = 24/68 (35%), Positives = 32/68 (46%), Gaps = 1/68 (1%)
Query: 18 IFNKFIDDSFLVDFPICGRLFTWYRGDGY-SMSKLDRFLLSDNCYSTWPNCIQIALQSGL 76
+FN ID L + + GR FTW + KLDR L+S +P AL L
Sbjct: 259 LFNAVIDSLDLRELELTGRKFTWANSSSKPTFEKLDRILMSTEWEQKYPLSTARALSREL 318
Query: 77 SDHVHMVL 84
SDH ++L
Sbjct: 319 SDHTPLLL 326
>emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar-group)]
gi|50921821|ref|XP_471271.1| OSJNBb0043H09.5 [Oryza
sativa (japonica cultivar-group)]
Length = 858
Score = 40.0 bits (92), Expect = 0.013
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 14 HDADIFNKFIDDSFLVDFPICGRLFTWYRGDGYS-MSKLDRFLLSDNCYSTWPNCIQIAL 72
+D +FN+ I + L + P+ GR +TW + +LD F S + +PN + AL
Sbjct: 2 NDIMVFNELISNIDLQELPLKGRTYTWSNMQSQPLLQQLDWFFTSPSWTVLYPNTMVTAL 61
Query: 73 QSGLSDHVHMVLRVDEENWGPRP--LRMLKCWANFPGYALFVR 113
+SDH E P+ R W PG+ V+
Sbjct: 62 SKCISDHT----PYPSETTVPKTDIFRFENFWVELPGFIEVVK 100
>gb|AAR01724.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|50900576|ref|XP_462721.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 961
Score = 39.7 bits (91), Expect = 0.018
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 9 SSFRQHDADIFNKFIDDSFLVDFPICGRLFTWYRG-DGYSMSKLDRFLLSDNCYSTWPNC 67
S+F +FN ID L++ + GR FTW + KLDR L+S +P
Sbjct: 789 SNFDDRWPFLFNAIIDGLCLMELQMSGRNFTWANNLANPTYEKLDRVLMSTEWEHNFPLA 848
Query: 68 IQIALQSGLSDHVHMVLRVDEEN 90
+AL +S+H ++L + +
Sbjct: 849 SVVALNRDISNHTPLLLNTNSSS 871
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.142 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,688,214
Number of Sequences: 2540612
Number of extensions: 7825568
Number of successful extensions: 15836
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 15791
Number of HSP's gapped (non-prelim): 94
length of query: 114
length of database: 863,360,394
effective HSP length: 90
effective length of query: 24
effective length of database: 634,705,314
effective search space: 15232927536
effective search space used: 15232927536
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC149307.10