BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149305.9 - phase: 0 /pseudo
(136 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 74 8e-13
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 70 1e-11
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 67 1e-10
dbj|BAB01814.1| unnamed protein product [Arabidopsis thaliana] 65 4e-10
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 65 5e-10
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 65 5e-10
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 64 8e-10
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 63 2e-09
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ... 63 2e-09
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 62 3e-09
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 60 1e-08
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 60 1e-08
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 59 3e-08
emb|CAB77868.1| putative reverse transcriptase [Arabidopsis thal... 59 3e-08
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 59 3e-08
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 59 3e-08
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 58 4e-08
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 58 4e-08
ref|XP_475066.1| hypothetical protein [Oryza sativa (japonica cu... 58 4e-08
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 58 4e-08
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 73.9 bits (180), Expect = 8e-13
Identities = 41/116 (35%), Positives = 65/116 (55%), Gaps = 3/116 (2%)
Query: 20 LINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K* 79
L +LA WK R L+ RV L +VL+SIP + M +A +D L+K SF+
Sbjct: 297 LTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMST--IALPKSTLDGLDKVSRSFLWGS 354
Query: 80 S-TNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
S T + +++ W ++ K + GGLG+R + N ALL K+ W L+ + LW++I+
Sbjct: 355 SVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIM 410
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 69.7 bits (169), Expect = 1e-11
Identities = 37/114 (32%), Positives = 63/114 (54%), Gaps = 3/114 (2%)
Query: 22 NKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*ST 81
++LA W+ R L+ R+ L +VL S+P + M L +D L++ SF+ +
Sbjct: 22 SRLAGWRGRFLSLAGRLTLTKAVLASLPVHTMTTIVLPK--STLDKLDQLSRSFLWGSTP 79
Query: 82 NKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
K ++++ WD++ K GGLG+R R N+ALL K+ W L+ LW+++L
Sbjct: 80 EKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVL 133
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 66.6 bits (161), Expect = 1e-10
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+LA WK R L+ R+ L +VL+SIP + M L + +D L++ +F+ +
Sbjct: 638 RLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLP--VSTLDTLDRYSRTFLWGSTME 695
Query: 83 KG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
K +++ W KI K K GG+G+R R N AL+ K+ W LL LW++++
Sbjct: 696 KKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVV 748
>dbj|BAB01814.1| unnamed protein product [Arabidopsis thaliana]
Length = 170
Score = 65.1 bits (157), Expect = 4e-10
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 11 KLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNK 70
K+ S V L N++ W + L+K + +++ V T++P Y M L I L
Sbjct: 17 KMFSFVRDRLQNRINGWSAKFLSKGGKEVMIKLVATALPTYVMSCFTLPKTIT--SKLTS 74
Query: 71 TVHSFI*K*S-TNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHL 129
+ F + ++GM+ + WDK+ +K GGLG R V N ALL K +W L+ N L
Sbjct: 75 AIPKFWWSSNGESRGMHWMAWDKVCYSKSEGGLGFRSVDNFNSALLAKQLWRLITVPNSL 134
Query: 130 WSQI 133
++++
Sbjct: 135 FARV 138
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 64.7 bits (156), Expect = 5e-10
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 22 NKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*ST 81
++LA WK R L+ R+ L SVL+ IP + M L ++ L+K F+ S
Sbjct: 451 SRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQ--STLEGLDKLARVFLLGSSA 508
Query: 82 NKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
K +++V WD++ K GGLG+R + N AL+ K+ W L+ LW++IL
Sbjct: 509 EKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARIL 562
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 64.7 bits (156), Expect = 5e-10
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 24 LASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*S-TN 82
L W+ LL++ R+ILVN+VL+S+P Y M L VI+ ++K +F T
Sbjct: 780 LTGWEASLLSQAERLILVNAVLSSVPVYAMSAFKLPPK--VIEAIDKRRRAFFWTGDDTC 837
Query: 83 KGMN-MVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMP----TNHLWSQ 132
G +V WD++ AK+ GGLG++ ++ QN ALL K ++NL TN +W +
Sbjct: 838 SGAKCLVAWDEVCTAKEKGGLGIKSLKTQNEALLLKRLFNLFSDNSSWTNWIWKE 892
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 63.9 bits (154), Expect = 8e-10
Identities = 37/114 (32%), Positives = 62/114 (53%), Gaps = 3/114 (2%)
Query: 22 NKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*ST 81
++L+ WK R L+ R+ L +VL SIP + M L +++ L+K +F+ +
Sbjct: 572 SRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLP--ASLLEQLDKVSRNFLWGSTV 629
Query: 82 NKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
K +++ W K+ + K GGLG+R + N ALL K+ W LL LW+++L
Sbjct: 630 EKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVL 683
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 62.8 bits (151), Expect = 2e-09
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+ ASW + L+ + IL+ SV ++P Y M L I + + + +F + ++N
Sbjct: 396 RTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGI--VSEIESLLMNFWWEKASN 453
Query: 83 K-GMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
K G+ V W ++ +KK GGLG R + K N ALL K W ++ N L+++++ A
Sbjct: 454 KRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKA 508
>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1197
Score = 62.8 bits (151), Expect = 2e-09
Identities = 38/113 (33%), Positives = 58/113 (50%), Gaps = 3/113 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*-K*ST 81
K SW R L+ + +++ SVLT+IP Y M L +C D + T+ F K
Sbjct: 605 KAISWSSRFLSGAGKQVMLQSVLTAIPVYAMSCFLLPLSLC--DRIQSTLTRFWWDKTDQ 662
Query: 82 NKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQIL 134
+ M VGWD++ K GGLG + + N+ALL K W +L + L +++L
Sbjct: 663 QRKMCWVGWDRLAVPKVRGGLGFKNFKAYNVALLAKQSWRVLPHPSCLLARVL 715
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 62.0 bits (149), Expect = 3e-09
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 11 KLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNK 70
K+ S V L +++ W + L+K + +++ SV ++P Y M L + L
Sbjct: 547 KVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPK--AITSKLTS 604
Query: 71 TVHSFI*K*S-TNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHL 129
V F + ++GM+ + WDK+ +K +GGLG R V N ALL K +W L+ + L
Sbjct: 605 AVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSL 664
Query: 130 WSQI 133
++++
Sbjct: 665 FAKV 668
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 60.1 bits (144), Expect = 1e-08
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+ ++W R L+ + I++ SV ++P Y M L I + + + +F + ++N
Sbjct: 1157 RTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGI--VSEIESLLMNFWWEKASN 1214
Query: 83 -KGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
+G+ V W ++ +KK GGLG R + K N ALL K W L+ N L+++++ A
Sbjct: 1215 QRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKA 1269
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 60.1 bits (144), Expect = 1e-08
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+ ++W R L+ + I++ SV ++P Y M L I + + + +F + ++N
Sbjct: 931 RTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGI--VSEIESLLMNFWWEKASN 988
Query: 83 -KGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
+G+ V W ++ +KK GGLG R + K N ALL K W L+ N L+++++ A
Sbjct: 989 QRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKA 1043
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 58.9 bits (141), Expect = 3e-08
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 23 KLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTVHSFI*K*STN 82
+L W LL+ + +L+ SV+ +IP Y M I L +C + L K +F
Sbjct: 286 RLIIWGENLLSSGGKEVLIKSVIQTIPVYVMGIFNLPESVC--EELTKLTRNFWW--GVE 341
Query: 83 KGMNMV---GWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWSQILSA 136
KG W+ +T+ K NGGLG R R N ALL + W L++ + L +++L A
Sbjct: 342 KGKRKTHWKSWECLTRPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKA 398
>emb|CAB77868.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|3377824|gb|AAC28197.1| contains similarity to reverse
transcriptases [Arabidopsis thaliana]
gi|7487391|pir||T01474 hypothetical protein T24H24.17 -
Arabidopsis thaliana
Length = 1077
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/123 (30%), Positives = 62/123 (49%), Gaps = 1/123 (0%)
Query: 12 LISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKT 71
L + + + + SW R L+ ++ ++ SVL+++P Y M L +C T
Sbjct: 699 LFTAIVDRIKQRALSWSSRFLSSAGKLTMLKSVLSTMPTYTMSCFQLPLSLCKRIQSTLT 758
Query: 72 VHSFI*K*STNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWS 131
+ K K M+ + W K+T + K+GGLG R V+ N ALL KL W LL + L +
Sbjct: 759 RFWWDSKPDQRK-MSWISWQKMTLSFKSGGLGFRDVQTFNKALLAKLSWRLLQNPSCLLA 817
Query: 132 QIL 134
++L
Sbjct: 818 KLL 820
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/128 (29%), Positives = 67/128 (51%), Gaps = 5/128 (3%)
Query: 11 KLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNK 70
K+ S + + ++ WK +LL++ + IL+ +V IP + M L +C D ++K
Sbjct: 964 KIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLC--DQISK 1021
Query: 71 TVHSF--I*K*STNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNH 128
+ + + NK M+ + W+K+T K GGLG R + N+A+L K W L+ +
Sbjct: 1022 MIAKYWWSNQEKDNK-MHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDS 1080
Query: 129 LWSQILSA 136
L S++L A
Sbjct: 1081 LCSRVLRA 1088
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 58.5 bits (140), Expect = 3e-08
Identities = 35/124 (28%), Positives = 62/124 (49%), Gaps = 3/124 (2%)
Query: 11 KLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNK 70
++ S V L ++ W + L+K + +++ SV+ +P Y M L I L
Sbjct: 613 RIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTIT--SKLTS 670
Query: 71 TVHSFI*K*S-TNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHL 129
V F ++GM+ + W+K+ +K +GGLG R V N ALL K +W L+ + L
Sbjct: 671 AVAKFWWSSDGESRGMHWMAWNKLCSSKADGGLGFRSVNDFNSALLAKQLWRLITVPDSL 730
Query: 130 WSQI 133
++++
Sbjct: 731 FAKV 734
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 58.2 bits (139), Expect = 4e-08
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 16 VCGFLINKLA----SWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKT 71
+ G +I+K+ SW R L++ + +++ +VL S+P Y M L +C T
Sbjct: 659 IFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLT 718
Query: 72 VHSFI*K*STNKGMNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLWS 131
+ K K + V W K+T K GGLG R + + N +LL KL W LL L S
Sbjct: 719 RFWWDTKPDVRK-TSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLS 777
Query: 132 QIL 134
+IL
Sbjct: 778 RIL 780
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 58.2 bits (139), Expect = 4e-08
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 1 EKTNHFNIIFKLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAH 60
+K + FN I + + + +SW + L+ + I++ SV S+P Y M L
Sbjct: 1122 KKRDMFNYIIERVK-------KRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLP- 1173
Query: 61 YICVIDHLNKTVHSFI*K*STNKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLV 119
+ ++ + + +F + + K + + W ++ +KK GGLG R + K N ALL K V
Sbjct: 1174 -LNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQV 1232
Query: 120 WNLLMPTNHLWSQILSA 136
W ++ N L+++I+ A
Sbjct: 1233 WRMINNPNSLFARIMKA 1249
>ref|XP_475066.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 959
Score = 58.2 bits (139), Expect = 4e-08
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 13 ISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAHYICVIDHLNKTV 72
I L+ L LA WK +LL+ +R+ L+ VL ++P Y M + L + I+ + K
Sbjct: 773 IQLMMDRLAKNLAGWKPKLLSPDARLALIKHVLMALPLYFMSVLELPAW--AINEIEKKC 830
Query: 73 HSFI*K*STNKG--MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLVWNLLMPTNHLW 130
FI K + ++V W+K+ + + GGLG+R +R IAL + +W W
Sbjct: 831 WGFIWKGDEDAAGSCSLVAWEKLCLSIEQGGLGIRNLRLMGIALRTRWIWLCRAEPECSW 890
Query: 131 SQI 133
++I
Sbjct: 891 TRI 893
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 58.2 bits (139), Expect = 4e-08
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 1 EKTNHFNIIFKLISLVCGFLINKLASWKCRLLNKPSRVILVNSVLTSIPAYKMQIH*LAH 60
+K + FN I + + + +SW + L+ + I++ SV S+P Y M L
Sbjct: 1142 KKRDMFNYIIERVK-------KRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLP- 1193
Query: 61 YICVIDHLNKTVHSFI*K*STNKG-MNMVGWDKITKAKKNGGLGVRVVRKQNIALLGKLV 119
+ ++ + + +F + + K + + W ++ +KK GGLG R + K N ALL K V
Sbjct: 1194 -LNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQV 1252
Query: 120 WNLLMPTNHLWSQILSA 136
W ++ N L+++I+ A
Sbjct: 1253 WRMINNPNSLFARIMKA 1269
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.337 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,283,197
Number of Sequences: 2540612
Number of extensions: 7039193
Number of successful extensions: 21134
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 20849
Number of HSP's gapped (non-prelim): 195
length of query: 136
length of database: 863,360,394
effective HSP length: 112
effective length of query: 24
effective length of database: 578,811,850
effective search space: 13891484400
effective search space used: 13891484400
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC149305.9