BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149212.6 - phase: 0 /pseudo
(1684 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 301 1e-79
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 280 3e-73
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 279 5e-73
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 279 7e-73
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 278 9e-73
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 278 9e-73
gb|AAL35396.1| Opie2a pol [Zea mays] 278 1e-72
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 276 3e-72
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 276 3e-72
gb|AAP52819.1| putative retroelement [Oryza sativa (japonica cul... 276 3e-72
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 275 1e-71
gb|AAD09018.1| polyprotein [Zea mays] 273 3e-71
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 273 4e-71
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 272 8e-71
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 271 1e-70
ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cu... 271 1e-70
ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sati... 270 4e-70
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 269 5e-70
gb|AAP52089.1| putative polyprotein [Oryza sativa (japonica cult... 268 9e-70
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 268 1e-69
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 301 bits (772), Expect = 1e-79
Identities = 150/324 (46%), Positives = 211/324 (64%), Gaps = 14/324 (4%)
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
GAC +GK ++ K + + T++ L+L+H+DL G + T S+ G +Y V+VDD+SR+ WV
Sbjct: 775 GACNQGKQIRVQHKRVEGIQTTQVLDLIHMDLMGPMQTESIAGKRYVFVLVDDFSRYAWV 834
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
+FI+ K F Q+++EK++ I ++RSD GGEF NE F SFCE GI H++S+P
Sbjct: 835 RFIREKSETANSFKILALQLKNEKKMGIKQIRSDRGGEFMNEAFNSFCESQGIFHQYSAP 894
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
RTPQ NGVVERKNRTLQEMAR MIH N + + FWAEAI+T+CY+ NR+Y+R +KT YE
Sbjct: 895 RTPQSNGVVERKNRTLQEMARAMIHGNGVPEKFWAEAISTACYVINRVYVRLGSDKTPYE 954
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +PN+SYF FGC CYI+N KD L KFD++++ G FLGY+ S AYRV+N + +
Sbjct: 955 IWKGKKPNLSYFRVFGCVCYIMNDKDQLGKFDSRSEEGFFLGYATNSLAYRVWNKQRGKI 1014
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESSPE---AEIT 1055
EESM+V FDD GS Q I + +E Q S S H E + + +I
Sbjct: 1015 EESMNVVFDD---GSMPELQ-------IIVRNRNE-PQTSISNNHGEERNDNQFDNGDIN 1063
Query: 1056 PEAESNSEAEPSPEIQNENASEDI 1079
E + E P ++ ++AS+DI
Sbjct: 1064 KSGEESDEEVPPAQVHRDHASKDI 1087
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 280 bits (716), Expect = 3e-73
Identities = 157/356 (44%), Positives = 202/356 (56%), Gaps = 19/356 (5%)
Query: 760 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVK 819
ACQ GK V + K+I++T RPLELLH+DLFG + S+ GSKY LVIVDDYSR+TWV
Sbjct: 159 ACQAGKQVGTHHPHKNIMTTDRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWVF 218
Query: 820 FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPR 879
F++ K E F + Q+E L+I K+RSD+G EF+N ESF E+ GI HEFSSP
Sbjct: 219 FLQEKSQTQETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIESFLEEEGIKHEFSSPY 278
Query: 880 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYEL 939
TPQQNGVVERKNRTL +MARTM+ E FWAEA+NT+CY NR+Y+ +L+KT+YEL
Sbjct: 279 TPQQNGVVERKNRTLLDMARTMLDEYKTPDRFWAEAVNTACYAINRLYLHRILKKTSYEL 338
Query: 940 FKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVE 999
G +PNISYF FG C+IL + KF K G LGY ++AYRV+N T VE
Sbjct: 339 LTGKKPNISYFRVFGSKCFILIKRGRKSKFAPKTVEGFLLGYDSNTRAYRVFNKSTGLVE 398
Query: 1000 ESMHVKFDDREPGSKT-----PEQSESNA----------GTIDSEDASESDQLSDSEKHS 1044
S V FD+ GS+ E E A G + +++ E D S
Sbjct: 399 VSCDVVFDETN-GSQVEQVDLDEIGEEQAPCIALRNMSIGDVCPKESEEPPSTQDQPSSS 457
Query: 1045 EVESSP---EAEITPEAESNSEAEPSPEIQNENASEDIQDNSQQAIQPKFKHKSSH 1097
S P E E + E N E EP + N+ + + +P+ H H
Sbjct: 458 MQASPPTQNEDEAQNDEEQNQEDEPPQDDSNDQGGDTNDQEKEDEEEPRPPHPRVH 513
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 279 bits (714), Expect = 5e-73
Identities = 151/333 (45%), Positives = 200/333 (59%), Gaps = 5/333 (1%)
Query: 760 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVK 819
ACQ GK V + K+I++T RPLELLH+DLFG + S+ GSKY LVIVDDYSR+TWV
Sbjct: 988 ACQAGKQVGTHHPHKNIMTTDRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWVF 1047
Query: 820 FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPR 879
F++ K E F + Q+E L+I K+RSD+G EF+N ESF E+ GI HEFSSP
Sbjct: 1048 FLQEKSQTQETLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIESFLEEEGIKHEFSSPY 1107
Query: 880 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYEL 939
TPQQNGVVERKNRTL +MARTM+ E FWAEA+NT+CY NR+Y+ +L+KT+YEL
Sbjct: 1108 TPQQNGVVERKNRTLLDMARTMLDEYKTPDRFWAEAVNTACYAINRLYLHRILKKTSYEL 1167
Query: 940 FKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVE 999
G +PNISYF FG C+IL + KF K G LGY ++AYRV+N T VE
Sbjct: 1168 LTGKKPNISYFRVFGSKCFILIKRGRKSKFAPKTVEGFLLGYDSNTRAYRVFNKSTGLVE 1227
Query: 1000 ESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESSPEAEITPEAE 1059
S V FD+ GS+ + G + + + E E P + P
Sbjct: 1228 VSCDVVFDETN-GSQVEQVDLDEIGEEQAPCIALRNMSIGDVCPKESEEPPSTQDQPP-- 1284
Query: 1060 SNSEAEPSPEIQNENASEDIQDNSQQAIQPKFK 1092
S + SP QNE+ +++ ++ +Q+ P+ K
Sbjct: 1285 --SSMQASPPTQNEDEAQNDEEQNQEVKPPQDK 1315
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 279 bits (713), Expect = 7e-73
Identities = 146/320 (45%), Positives = 193/320 (59%), Gaps = 11/320 (3%)
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
G CQ GK VK S + +TSR LELLH+DL G + SL G +Y V+VDD+SR+TWV
Sbjct: 729 GECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 788
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
FI+ K EVF ++Q EK+ I ++RSDHG EFEN F FC GI HEFS+
Sbjct: 789 NFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAA 848
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE
Sbjct: 849 ITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYE 908
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +P + +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V
Sbjct: 909 IWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTV 968
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSE-VESSPEAEITPE 1057
ES++V DD P K ++ + + D ++D+ K +E E+S A P
Sbjct: 969 MESINVVVDDLTPARKK---------DVEEDVRTSGDNVADTAKSAENAENSDSATDEPN 1019
Query: 1058 AESNSEAEPSPEIQNENASE 1077
+ + PS IQ + E
Sbjct: 1020 I-NQPDKRPSIRIQKMHPKE 1038
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 278 bits (712), Expect = 9e-73
Identities = 138/291 (47%), Positives = 185/291 (63%)
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
G CQ GK VK S + +TSR LELLH+DL G + SL G +Y V+VDD+SR+TWV
Sbjct: 728 GECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 787
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
FI+ K EVF ++Q EK+ I ++RSDHG EFEN F FC GI HEFS+
Sbjct: 788 NFIREKSGTFEVFKKLSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAA 847
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE
Sbjct: 848 ITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYE 907
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +P++ +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V
Sbjct: 908 IWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTV 967
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESS 1049
ES++V DD P K + + + DA++S + +++ + ES+
Sbjct: 968 MESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESN 1018
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 278 bits (712), Expect = 9e-73
Identities = 138/291 (47%), Positives = 185/291 (63%)
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
G CQ GK VK S + +TSR LELLH+DL G + SL G +Y V+VDD+SR+TWV
Sbjct: 726 GECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 785
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
KFI+ K EVF ++Q EK+ I ++RSDHG EFEN FC GI HEFS+
Sbjct: 786 KFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRLTEFCTSEGITHEFSAA 845
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE
Sbjct: 846 ITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYE 905
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +P++ +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V
Sbjct: 906 IWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTV 965
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESS 1049
ES++V DD P K + + + DA++S + +++ + ES+
Sbjct: 966 MESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESN 1016
>gb|AAL35396.1| Opie2a pol [Zea mays]
Length = 1048
Score = 278 bits (711), Expect = 1e-72
Identities = 145/335 (43%), Positives = 203/335 (60%), Gaps = 9/335 (2%)
Query: 760 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVK 819
ACQ GK V+ S +K++++TSRPLE+LH+DLFG V S+ GSKYGLVIVDD+SR+TWV
Sbjct: 161 ACQAGKQVRGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVF 220
Query: 820 FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPR 879
F++ K + + Q+E ELK+ K+RSD+G EF+N E F + GI HEFS+P
Sbjct: 221 FLQDKSETQGTLKRYLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLVEEGIKHEFSAPY 280
Query: 880 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYEL 939
TPQQNGVVERKNRTL +MARTM+ E + FW+EA+NT+C+ NR+Y+ +L+ T+YEL
Sbjct: 281 TPQQNGVVERKNRTLMDMARTMLGEFKTPERFWSEAVNTACHSINRVYLHRLLKNTSYEL 340
Query: 940 FKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVE 999
G +PN+SYF FG CYIL K KF KA G LGY +KAYRV+N + VE
Sbjct: 341 LTGNKPNVSYFRVFGSKCYILVKKGRTSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVE 400
Query: 1000 ESMHVKFDDREPGSKTPEQSESNAGTIDSED----ASESDQLSDSEKHSEVESSPEAEIT 1055
S V FD+ + + N +D ED A + + D +E + T
Sbjct: 401 VSSDVVFDETNGSLR---EQVVNLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQPSSTT 457
Query: 1056 PEAESNSEAEPSPEI--QNENASEDIQDNSQQAIQ 1088
+ E +P++ ++ ++D+Q ++A Q
Sbjct: 458 MVHPPTQDDEQAPQVGAHDQGGAQDVQVEEEEAPQ 492
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 276 bits (707), Expect = 3e-72
Identities = 138/291 (47%), Positives = 185/291 (63%)
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
G CQ GK VK S + +TSR LELLH+DL G + SL G +Y V+VDD+SR+TWV
Sbjct: 728 GECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 787
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
FI+ K EVF ++Q EK+ I ++RSDHG EFEN F FC GI HEFS+
Sbjct: 788 NFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAA 847
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE
Sbjct: 848 ITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYE 907
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +P++ +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V
Sbjct: 908 IWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTV 967
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESS 1049
ES++V DD P K + + + DA++S + +++ + ES+
Sbjct: 968 MESINVVVDDLSPARKKDVEEDVRTLGDNVADAAKSGENAENSDSATDESN 1018
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 276 bits (707), Expect = 3e-72
Identities = 149/342 (43%), Positives = 200/342 (57%), Gaps = 10/342 (2%)
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
G CQ GK VK S + +TS LELLH+DL G + SL G +Y V+VDD+SR+TWV
Sbjct: 728 GECQIGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWV 787
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
FI+ K EVF ++Q EK+ I ++RSDHG EFEN F FC GI HEFS+
Sbjct: 788 NFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAA 847
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNG+VERKNRTLQE R M+H L + WAEA+NT+CYI NR+ +R T YE
Sbjct: 848 ITPQQNGIVERKNRTLQEATRVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYE 907
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +P + +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V
Sbjct: 908 IWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTV 967
Query: 999 EESMHVKFDDREPGSKTPEQ-----SESNAGTI--DSEDASESDQLSDSEKHSEVESSPE 1051
ES++V DD P K + SE N +E+A +SD +D ++ + SP
Sbjct: 968 MESINVVVDDLTPARKKDVEEDVRTSEDNVADTAKSAENAEKSDSTTDEPNINQPDKSPF 1027
Query: 1052 AEITP-EAESNSEAEPSPEIQNENASEDIQDNS--QQAIQPK 1090
I + + +P+ + + +I NS I+PK
Sbjct: 1028 IRIQKMQPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPK 1069
>gb|AAP52819.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532460|ref|NP_920532.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|20043059|gb|AAM08867.1| Putative retroelement [Oryza
sativa]
Length = 1061
Score = 276 bits (707), Expect = 3e-72
Identities = 146/335 (43%), Positives = 204/335 (60%), Gaps = 7/335 (2%)
Query: 744 KRIKFLKNPS*NPFSGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSK 803
K +KF K+ ACQ GK S +K I+STSRPLELLH+DLFG S+ G+
Sbjct: 636 KDVKFEKDK----LCSACQAGKQFACSHPTKSIMSTSRPLELLHMDLFGPTTYKSIGGNS 691
Query: 804 YGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFE 863
+ LVIVDDYSR+TWV F+ K E+F F + Q+E ++K+RSD+G EF+N E
Sbjct: 692 HCLVIVDDYSRYTWVFFLHDKSIVAELFKKFAKRAQNEFSCTLVKIRSDNGSEFKNTNIE 751
Query: 864 SFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQ 923
+C+ GI H+ S+ +PQQNG+VERKNRTL EMARTM+ E ++ FWAEAINT+C+
Sbjct: 752 DYCDDLGIKHKLSATYSPQQNGIVERKNRTLIEMARTMLDEYGVSDSFWAEAINTACHAT 811
Query: 924 NRIYIRPMLEKTAYELFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSE 983
NR+Y+ +L+KT+YEL G +PN++YF FGC CYI L KF+++ G LGY+
Sbjct: 812 NRLYLHRLLKKTSYELIVGRKPNVAYFRVFGCKCYIYRKGVGLTKFESRCDEGFLLGYAS 871
Query: 984 RSKAYRVYNSETHCVEESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKH 1043
+KAYRVYN VEE+ V+FDD GS+ ++ + G A ++ + D K
Sbjct: 872 NNKAYRVYNKNKGIVEETTDVQFDDTN-GSQEGHENLDDVGDEGLMRAMKNMSIGD-VKP 929
Query: 1044 SEVESSPEAEITPE-AESNSEAEPSPEIQNENASE 1077
EVE P E + S + ++ E++ E A +
Sbjct: 930 IEVEDKPSTSTQDEPSTSATPSQAQVEVEEEKAQD 964
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 275 bits (702), Expect = 1e-71
Identities = 146/328 (44%), Positives = 199/328 (60%), Gaps = 14/328 (4%)
Query: 760 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVK 819
ACQ GK V S +K++++TSRPLE+LH+DLFG V S+ GSKYGLVIVDD+SR+TWV
Sbjct: 181 ACQAGKQVGGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVF 240
Query: 820 FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPR 879
F++ K F + Q+E ELK+ K+RSD+G EF+N E F E+ GI HEFS+P
Sbjct: 241 FLQEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPY 300
Query: 880 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYEL 939
TPQQNGVVERKNRTL +MARTM+ E + FW EA+NT+C+ NR+Y+ +L+ T+YEL
Sbjct: 301 TPQQNGVVERKNRTLIDMARTMLGEFKTPECFWTEAVNTACHAINRVYLHRILKNTSYEL 360
Query: 940 FKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVE 999
G +PN+SYF FG CYIL K KF KA G LGY +KAYRV+N + VE
Sbjct: 361 LTGNKPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVE 420
Query: 1000 ESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESSPEAEITPEAE 1059
S V FD+ + +P + + +D ED + + + E+ P+ E
Sbjct: 421 VSGDVVFDET---NGSPREQVVDCDDVDEEDIPT----------AAIRTMAIGEVRPQ-E 466
Query: 1060 SNSEAEPSPEIQNENASEDIQDNSQQAI 1087
+ +PSP ++D + QQ +
Sbjct: 467 QDEREQPSPSTMVHPPTQDDEQVHQQEV 494
>gb|AAD09018.1| polyprotein [Zea mays]
Length = 476
Score = 273 bits (699), Expect = 3e-71
Identities = 144/316 (45%), Positives = 195/316 (61%), Gaps = 7/316 (2%)
Query: 760 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVK 819
ACQ GK V + SK++++TSRPLELLH+DLFG V S+ GSKYGLVIVDD+SR+TWV
Sbjct: 161 ACQAGKQVGGAHHSKNVMTTSRPLELLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVF 220
Query: 820 FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPR 879
F++ K F + Q+E ELK+ K+RSD+G EF+N E F E+ GI HEFS+P
Sbjct: 221 FLQDKSKTQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPY 280
Query: 880 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYEL 939
TPQQNGVVERKNRTL +MAR M+ E + FW+EA+NT+C+ NR+Y+ +L+KT+YEL
Sbjct: 281 TPQQNGVVERKNRTLIDMARIMLGEFKTPERFWSEAMNTACHAINRVYLHRLLKKTSYEL 340
Query: 940 FKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVE 999
G +PN+SYF FG CYIL K KF KA G LGY +KAYRV+N + VE
Sbjct: 341 LTGNKPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVE 400
Query: 1000 ESMHVKFDDREPGSKTPEQSESNAGTIDSED----ASESDQLSDSEKHSEVESSPEAEIT 1055
S V FD+ + +P + + +D ED A + + D ++E + T
Sbjct: 401 VSSDVVFDET---NGSPREQVVDLDDVDEEDVPTAAIRTMAIGDVRPQEQLEQDQLSSST 457
Query: 1056 PEAESNSEAEPSPEIQ 1071
+ E P+++
Sbjct: 458 MVHPPTQDNEQVPQVE 473
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 273 bits (698), Expect = 4e-71
Identities = 149/337 (44%), Positives = 203/337 (60%), Gaps = 11/337 (3%)
Query: 744 KRIKFLKNPS*NPFSGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSK 803
K +KF K+ ACQ GK V S +K I+STSRPLELLH+DLFG S+ G+
Sbjct: 682 KDVKFEKDK----LCSACQAGKQVACSHPTKSIMSTSRPLELLHMDLFGPTTYKSIGGNS 737
Query: 804 YGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFE 863
+ LVIVDDYSR+TWV F+ K E+F + Q+E ++K+RSD+G EF+N E
Sbjct: 738 HCLVIVDDYSRYTWVFFLHDKSIVAELFKKIAKRAQNEFSCTLVKIRSDNGSEFKNTNIE 797
Query: 864 SFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQ 923
+C+ GI HE S+ +PQQNGVVERKNRTL EMARTM+ E ++ FWAEAINT+C+
Sbjct: 798 DYCDDLGIKHELSATYSPQQNGVVERKNRTLIEMARTMLDEYGVSDSFWAEAINTACHAT 857
Query: 924 NRIYIRPMLEKTAYELFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSE 983
NR Y+ +L+ T+YEL G +PN++YF FGC CYI L KF+++ G LGY+
Sbjct: 858 NRFYLHRLLKNTSYELIVGRKPNVAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYAS 917
Query: 984 RSKAYRVYNSETHCVEESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKH 1043
SKAYRVYN VEE+ V+FD+ GS+ ++ + G A ++ D K
Sbjct: 918 NSKAYRVYNKNKGTVEETADVQFDETN-GSQEGHENLDDVGDEGLIRAMKNMSFGD-VKP 975
Query: 1044 SEVESSPEAEITPEAESNSEAEPSP---EIQNENASE 1077
EVE P + + E ++ A PS E++ E A +
Sbjct: 976 IEVEDKPST--STQDEPSTFATPSQAQVEVEEEKAQD 1010
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 272 bits (695), Expect = 8e-71
Identities = 144/320 (45%), Positives = 191/320 (59%), Gaps = 11/320 (3%)
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
G CQ GK VK S + +TSR LELLH+DL G + SL +Y V+VDD+SR+TWV
Sbjct: 702 GECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWV 761
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
FI+ K EVF ++Q EK+ I ++RSDHG EFEN F FC GI HEFS+
Sbjct: 762 NFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAA 821
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE
Sbjct: 822 ITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYE 881
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
++KG +P + +FH G CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T V
Sbjct: 882 IWKGRKPTVKHFHICGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTV 941
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSE-VESSPEAEITPE 1057
ES++V DD P K ++ + + D ++D+ K +E E+S A P
Sbjct: 942 MESINVVVDDLTPARKK---------DVEEDVRTSGDNVADTAKSAENAENSDSATDEPN 992
Query: 1058 AESNSEAEPSPEIQNENASE 1077
+ + PS IQ + E
Sbjct: 993 I-NQPDKRPSIRIQKMHPKE 1011
>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2011
Score = 271 bits (693), Expect = 1e-70
Identities = 144/335 (42%), Positives = 203/335 (59%), Gaps = 7/335 (2%)
Query: 744 KRIKFLKNPS*NPFSGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSK 803
K +KF K+ ACQ GK V S +K I+STSRPLELLH++ FG S+ G+
Sbjct: 716 KDVKFEKDK----LCSACQAGKQVACSHPTKSIMSTSRPLELLHMEFFGPTTYKSIGGNS 771
Query: 804 YGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFE 863
+ LVIVDDYSR+TW+ F+ K E+F F + Q+E ++K+RSD+G +F+N E
Sbjct: 772 HCLVIVDDYSRYTWMFFLHDKSIVAELFKKFAKRGQNEFNCTLVKIRSDNGSKFKNTNIE 831
Query: 864 SFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQ 923
+C+ GI HE S+ +PQQNGVVE KNRTL EMARTM+ E ++ FWAEAINT+C+
Sbjct: 832 DYCDDLGIKHELSATYSPQQNGVVEMKNRTLIEMARTMLDEYGVSDSFWAEAINTACHAT 891
Query: 924 NRIYIRPMLEKTAYELFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSE 983
NR+Y+ +L+KT+YEL G +PN++YF FGC CYI L KF+++ G LGY+
Sbjct: 892 NRLYLHRLLKKTSYELIVGRKPNVAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYAS 951
Query: 984 RSKAYRVYNSETHCVEESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKH 1043
SKAYRVYN VEE+ V+FD+ GS+ ++ + G A ++ + D K
Sbjct: 952 NSKAYRVYNKNKGIVEETADVQFDETN-GSQEGHENLDDVGDEGLMRAMKNMSIGD-VKP 1009
Query: 1044 SEVESSPEAEITPE-AESNSEAEPSPEIQNENASE 1077
EVE P E + S + ++ E++ E A +
Sbjct: 1010 IEVEDKPSTSTQDEPSTSATPSQAQVEVEEEKAQD 1044
>ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209450|gb|AAO37468.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1128
Score = 271 bits (693), Expect = 1e-70
Identities = 146/335 (43%), Positives = 202/335 (59%), Gaps = 7/335 (2%)
Query: 744 KRIKFLKNPS*NPFSGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSK 803
K +KF K+ ACQ K V S +K I+STSRPLELLH+DLFG S+ G+
Sbjct: 240 KDVKFEKDK----LCSACQASKQVACSHPTKSIMSTSRPLELLHMDLFGPTTYKSIGGNS 295
Query: 804 YGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFE 863
+ LVIVDDYS +TWV F+ K E+F F + Q+E ++K+RSD+G +F+N E
Sbjct: 296 HCLVIVDDYSCYTWVFFLHDKCIVAELFKKFAKRAQNEFSCTLVKIRSDNGSKFKNTNIE 355
Query: 864 SFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQ 923
+C+ I HE S+ +PQQNGVVERKNRTL EMARTM+ E ++ FWAEAINT+C+
Sbjct: 356 DYCDDLSIKHELSATYSPQQNGVVERKNRTLIEMARTMLDEYGVSDSFWAEAINTACHAT 415
Query: 924 NRIYIRPMLEKTAYELFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSE 983
NR+Y+ +L+KT+YEL G +PN++YF FGC CYI L KF+++ G LGY+
Sbjct: 416 NRLYLHRLLKKTSYELIVGRKPNVAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYAS 475
Query: 984 RSKAYRVYNSETHCVEESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKH 1043
SKAYRVYN VEE+ V+FD+ GS+ ++ + G A ++ + D K
Sbjct: 476 NSKAYRVYNKNKGIVEETADVQFDETN-GSQEGHENLDDVGDEGLMRAMKNMSIGD-VKP 533
Query: 1044 SEVESSPEAEITPE-AESNSEAEPSPEIQNENASE 1077
EVE P E + S S ++ E++ E A +
Sbjct: 534 IEVEDKPSTSTQDEPSTSASPSQAQVEVEKEKAQD 568
>ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|29126367|gb|AAO66559.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 270 bits (689), Expect = 4e-70
Identities = 141/329 (42%), Positives = 194/329 (58%), Gaps = 9/329 (2%)
Query: 760 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVK 819
ACQ GK + + K++++T+R LELLH+DLFG + S+ G+KYGLVIVDD+SR+TWV
Sbjct: 857 ACQAGKQIGAHHPVKNVMTTTRALELLHMDLFGPIAYLSIGGNKYGLVIVDDFSRFTWVF 916
Query: 820 FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPR 879
F+ K +F F + Q+E +LKI +RSD+G EF+N ESF ++ GI HEFS+P
Sbjct: 917 FLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNGKEFKNTCIESFLDEEGIKHEFSAPY 976
Query: 880 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYEL 939
+PQQNGV ERKNRTL EMA+TM+ E + FWAEA+NT+C+ NR+Y+ +L+KT YEL
Sbjct: 977 SPQQNGVAERKNRTLIEMAKTMLDEYKTSDRFWAEAVNTACHAINRLYLHRLLKKTPYEL 1036
Query: 940 FKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVE 999
G +PN+SYF FG CYILN K KF K G LGY AYRV+N + VE
Sbjct: 1037 LTGNKPNVSYFRVFGSKCYILNKKARSSKFSPKVDEGFLLGYGSNECAYRVFNKTSSIVE 1096
Query: 1000 ESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESSPEAEITPEAE 1059
+ V FD E + +DS E + S++ K + E
Sbjct: 1097 IARDVTFD---------ETNGFQVEQVDSHVLGEEEDPSEAIKRLALGDVLPREPQQGVS 1147
Query: 1060 SNSEAEPSPEIQNENASEDIQDNSQQAIQ 1088
S+++ EP Q ++ S I D ++ Q
Sbjct: 1148 SSTQVEPPTSTQADDPSISILDQDEEGEQ 1176
>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
Length = 2319
Score = 269 bits (688), Expect = 5e-70
Identities = 150/359 (41%), Positives = 204/359 (56%), Gaps = 18/359 (5%)
Query: 759 GACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWV 818
GACQ GK +SK++V+T RPLELLH+DLFG V S+ GSKYGLVIVDD+SR+TWV
Sbjct: 903 GACQAGKQHGVPHQSKNVVTTKRPLELLHMDLFGPVAYISIGGSKYGLVIVDDFSRFTWV 962
Query: 819 KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSP 878
F+ K E+ F + Q+E ELKI KVRSD+G EF+N E F + GI HEFS P
Sbjct: 963 FFLSDKGETQEILKKFMRRAQNEFELKIKKVRSDNGTEFKNTGVEEFLGEEGIKHEFSVP 1022
Query: 879 RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYE 938
TPQQNGVVERKNRTL E ARTM+ E +FWAEA+NT+C+ NR+Y+ + +KTAYE
Sbjct: 1023 YTPQQNGVVERKNRTLIEAARTMLDEYKTPDNFWAEAVNTACHAINRLYLHKIYKKTAYE 1082
Query: 939 LFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCV 998
L G +P + YF FGC C+ILN K KF + G LGY+ + YRV+N+ T V
Sbjct: 1083 LLTGNKPKVDYFRVFGCKCFILNKKVKSSKFAPRVDEGFLLGYASNAHGYRVFNNSTGLV 1142
Query: 999 EESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESSPEAEITPEA 1058
E ++ V FD +S + G + ++ +S K + E+ P+
Sbjct: 1143 EIAIDVTFD----------ESNGSQGHVSNDTVGNEKLPCESIKKLAI-----GEVRPQE 1187
Query: 1059 ESNSEAE--PSPEIQNENASEDIQDNSQQAIQPKFKHKSSHLRS*SLEAKIVLEEQDHI 1115
+ E + E+ + A + DN P +H + +V +EQ++I
Sbjct: 1188 RDDEEGTLWMTNEVVDVGA-RVVSDNVSTQANPSTSSHPNHEENHQRMPTVVEDEQENI 1245
>gb|AAP52089.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531000|ref|NP_919802.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16519476|gb|AAL25185.1| Putative polyprotein [Oryza
sativa]
Length = 1407
Score = 268 bits (686), Expect = 9e-70
Identities = 142/329 (43%), Positives = 194/329 (58%), Gaps = 9/329 (2%)
Query: 760 ACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSLYGSKYGLVIVDDYSRWTWVK 819
ACQ K + + K++++T+RPLE LH+DLFG + S+ G+KYGLVIVDD+SR+TWV
Sbjct: 870 ACQARKQIGAHHPVKNVMTTTRPLEFLHMDLFGPIAYLSIGGNKYGLVIVDDFSRFTWVF 929
Query: 820 FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENETFESFCEKHGILHEFSSPR 879
F+ K +F F + Q+E +LKI +RSD+G EF+N ESF ++ GI HEFS+
Sbjct: 930 FLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNGKEFKNMCIESFLDEEGIKHEFSAAY 989
Query: 880 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTSCYIQNRIYIRPMLEKTAYEL 939
+PQQNGV ERKNRTL EMARTM+ E + HFWAEA+NT+C+ NR+Y+ +L+KT YEL
Sbjct: 990 SPQQNGVAERKNRTLIEMARTMLDEYKTSDHFWAEAVNTACHAINRLYLHRLLKKTPYEL 1049
Query: 940 FKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETHCVE 999
G +PN+S F FG CYILN K KF K G LGY AYRV+N + VE
Sbjct: 1050 LTGNKPNVSCFRVFGSKCYILNKKARSSKFAPKVDEGFLLGYGSNECAYRVFNKTSGIVE 1109
Query: 1000 ESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSDSEKHSEVESSPEAEITPEAE 1059
+ V FD E + S +DS E + S++ K + E A
Sbjct: 1110 IARDVTFD---------ETNGSQVEQVDSHVLGEEEDPSEAIKRLALGDVRPREPQQGAS 1160
Query: 1060 SNSEAEPSPEIQNENASEDIQDNSQQAIQ 1088
S+++ EPS Q +N S + ++ Q
Sbjct: 1161 SSTQVEPSTSTQVDNPSTSSLNQGEEGEQ 1189
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 268 bits (685), Expect = 1e-69
Identities = 143/339 (42%), Positives = 203/339 (59%), Gaps = 7/339 (2%)
Query: 740 ISSAKRIKFLKNPS*NPFSGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGQVNTTSL 799
+ K +KF K+ ACQ GK V S +K I+STS+PLELLH+DLF S+
Sbjct: 703 VMGLKDVKFEKDK----LCSACQAGKQVACSHPTKSIMSTSKPLELLHMDLFDPTTYKSI 758
Query: 800 YGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFEN 859
G+ + LVIVDDYSR+TWV F+ K ++F F + Q+E ++K+RS+ G EF+N
Sbjct: 759 GGNSHCLVIVDDYSRYTWVFFLHDKSIVADLFKKFAKRAQNEFSCTLVKIRSNIGSEFKN 818
Query: 860 ETFESFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAINTS 919
E +C+ GI HE + +PQQNGVVERKNRTL EMARTM+ E ++ FWAEAINT+
Sbjct: 819 TNIEDYCDDLGIKHELFATYSPQQNGVVERKNRTLIEMARTMLDEYGVSDSFWAEAINTA 878
Query: 920 CYIQNRIYIRPMLEKTAYELFKGTRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFL 979
C+ NR+Y+ +L+KT+YE+ G +PNI+YF FGC CYI L KF+++ G L
Sbjct: 879 CHATNRLYLHRVLKKTSYEVIVGRKPNIAYFRVFGCKCYIHRKGVRLTKFESRCDEGFLL 938
Query: 980 GYSERSKAYRVYNSETHCVEESMHVKFDDREPGSKTPEQSESNAGTIDSEDASESDQLSD 1039
GY+ +SKAYRVYN VEE+ V+FD+ GS+ ++ + G ++ + D
Sbjct: 939 GYASKSKAYRVYNKNKGIVEETADVQFDETN-GSQEGHENLDDVGDEGLMRVMKNMSIGD 997
Query: 1040 SEKHSEVESSPEAEITPEAESNS-EAEPSPEIQNENASE 1077
K EVE P E +++ ++ E++ E A E
Sbjct: 998 -VKPIEVEDKPSTSTQDEPSTSAMPSQAQVEVEEEKAQE 1035
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.359 0.159 0.563
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,190,655,583
Number of Sequences: 2540612
Number of extensions: 78546372
Number of successful extensions: 509786
Number of sequences better than 10.0: 4061
Number of HSP's better than 10.0 without gapping: 2987
Number of HSP's successfully gapped in prelim test: 1140
Number of HSP's that attempted gapping in prelim test: 484541
Number of HSP's gapped (non-prelim): 14099
length of query: 1684
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1542
effective length of database: 502,593,490
effective search space: 774999161580
effective search space used: 774999161580
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 82 (36.2 bits)
Medicago: description of AC149212.6