BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149211.1 + phase: 0
(141 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB16798.1| putative protein [Arabidopsis thaliana] gi|72706... 123 8e-28
ref|NP_568010.1| basic helix-loop-helix (bHLH) protein SPATULA (... 123 8e-28
gb|AAV33474.1| basic helix-loop-helix protein [Fragaria x ananassa] 118 3e-26
dbj|BAD67851.1| basic helix-loop-helix protein SPATULA-like [Ory... 117 6e-26
ref|XP_468285.1| hypothetical protein [Oryza sativa (japonica cu... 108 2e-23
gb|AAK98706.1| Putative SPATULA [Oryza sativa] 108 3e-23
dbj|BAD43719.1| putative bHLH transcription factor (bHLH073/ALCA... 105 2e-22
gb|AAM61195.1| unknown [Arabidopsis thaliana] 104 4e-22
dbj|BAB10945.1| unnamed protein product [Arabidopsis thaliana] g... 104 4e-22
gb|AAC33213.1| Unknown protein [Arabidopsis thaliana] gi|2644960... 100 7e-21
gb|AAC99771.1| phytochrome-associated protein 3 [Arabidopsis tha... 100 1e-20
gb|AAN78308.1| putative bHLH transcription factor [Arabidopsis t... 97 6e-20
gb|AAD24380.1| unknown protein [Arabidopsis thaliana] gi|2541196... 97 6e-20
ref|NP_849996.1| basic helix-loop-helix (bHLH) family protein [A... 97 6e-20
gb|AAU10768.1| hypothetical protein [Oryza sativa (japonica cult... 97 8e-20
dbj|BAD81566.1| putative BP-5 protein [Oryza sativa (japonica cu... 97 8e-20
ref|NP_911152.1| transcription factor BHLH9-like protein [Oryza ... 97 1e-19
emb|CAD29449.1| phytochrome interacting factor 4 [Arabidopsis th... 95 4e-19
pir||H84860 hypothetical protein At2g43010 [imported] - Arabidop... 95 4e-19
ref|NP_850381.1| phytochrome-interacting factor 4 (PIF4) / basic... 95 4e-19
>emb|CAB16798.1| putative protein [Arabidopsis thaliana] gi|7270642|emb|CAB80359.1|
putative protein [Arabidopsis thaliana]
gi|25407777|pir||B85436 hypothetical protein AT4g36930
[imported] - Arabidopsis thaliana
Length = 415
Score = 123 bits (309), Expect = 8e-28
Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 25 ELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDE 84
E PSSK+ P RSSSKR RAAE HNLSEKRRRS+INEK+KALQ+LIPNSNKTDKASMLDE
Sbjct: 179 EAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDE 238
Query: 85 AIEYLKQLQLQVQV 98
AIEYLKQLQLQVQ+
Sbjct: 239 AIEYLKQLQLQVQM 252
>ref|NP_568010.1| basic helix-loop-helix (bHLH) protein SPATULA (SPT) [Arabidopsis
thaliana] gi|11245494|gb|AAG33640.1| SPATULA
[Arabidopsis thaliana]
Length = 373
Score = 123 bits (309), Expect = 8e-28
Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 25 ELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDE 84
E PSSK+ P RSSSKR RAAE HNLSEKRRRS+INEK+KALQ+LIPNSNKTDKASMLDE
Sbjct: 179 EAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDE 238
Query: 85 AIEYLKQLQLQVQV 98
AIEYLKQLQLQVQ+
Sbjct: 239 AIEYLKQLQLQVQM 252
>gb|AAV33474.1| basic helix-loop-helix protein [Fragaria x ananassa]
Length = 298
Score = 118 bits (295), Expect = 3e-26
Identities = 68/99 (68%), Positives = 76/99 (76%), Gaps = 6/99 (6%)
Query: 16 FGLKNDEGSELPSSKAAPPP--RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNS 73
+ +++EG E +AA RSSSKRSRAAE HNLSEKRRRS+INEK+KALQNLIPNS
Sbjct: 115 YDCESEEGLEALVEEAAVKSGGRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNS 174
Query: 74 NKTDKASMLDEAIEYLKQLQLQVQVSFLSLKMNNQTLKH 112
NKTDKASMLDEAIEYLKQLQLQVQ+ L M N H
Sbjct: 175 NKTDKASMLDEAIEYLKQLQLQVQM----LSMRNGMSLH 209
>dbj|BAD67851.1| basic helix-loop-helix protein SPATULA-like [Oryza sativa (japonica
cultivar-group)]
Length = 315
Score = 117 bits (293), Expect = 6e-26
Identities = 67/95 (70%), Positives = 72/95 (75%), Gaps = 6/95 (6%)
Query: 23 GSELPSSKAAPPPR--SSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKAS 80
GS P + A PR S SKRSRAAE HNLSEKRRRSKINEK+KALQ+LIPNSNKTDKAS
Sbjct: 81 GSSEPEAAAGARPRGGSGSKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKAS 140
Query: 81 MLDEAIEYLKQLQLQVQVSFLSLKMNNQTLKHVKY 115
MLDEAIEYLKQLQLQVQ+ L M N + Y
Sbjct: 141 MLDEAIEYLKQLQLQVQM----LSMRNGVYLNPSY 171
>ref|XP_468285.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|47497385|dbj|BAD19423.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 110
Score = 108 bits (271), Expect = 2e-23
Identities = 55/73 (75%), Positives = 63/73 (85%)
Query: 28 SSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIE 87
S + P R KRSRAAE HNLSEKRRRS+INEK+KALQ+LIPNS+KTDKASMLD+AIE
Sbjct: 17 SEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLDDAIE 76
Query: 88 YLKQLQLQVQVSF 100
YLKQLQLQVQ+ +
Sbjct: 77 YLKQLQLQVQMIY 89
>gb|AAK98706.1| Putative SPATULA [Oryza sativa]
Length = 298
Score = 108 bits (270), Expect = 3e-23
Identities = 55/71 (77%), Positives = 62/71 (86%)
Query: 28 SSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIE 87
S + P R KRSRAAE HNLSEKRRRS+INEK+KALQ+LIPNS+KTDKASMLD+AIE
Sbjct: 17 SEQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKTDKASMLDDAIE 76
Query: 88 YLKQLQLQVQV 98
YLKQLQLQVQ+
Sbjct: 77 YLKQLQLQVQM 87
>dbj|BAD43719.1| putative bHLH transcription factor (bHLH073/ALCATRAZ) [Arabidopsis
thaliana]
Length = 210
Score = 105 bits (263), Expect = 2e-22
Identities = 54/62 (87%), Positives = 58/62 (93%)
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 95
R+S KRS A+FHNLSEK+RRSKINEK+KALQ LIPNSNKTDKASMLDEAIEYLKQLQLQ
Sbjct: 86 RNSLKRSIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQ 145
Query: 96 VQ 97
VQ
Sbjct: 146 VQ 147
>gb|AAM61195.1| unknown [Arabidopsis thaliana]
Length = 210
Score = 104 bits (260), Expect = 4e-22
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 95
R+S KR+ A+FHNLSEK+RRSKINEK+KALQ LIPNSNKTDKASMLDEAIEYLKQLQLQ
Sbjct: 86 RNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQ 145
Query: 96 VQ 97
VQ
Sbjct: 146 VQ 147
>dbj|BAB10945.1| unnamed protein product [Arabidopsis thaliana]
gi|15240202|ref|NP_201512.1| basic helix-loop-helix
(bHLH) family protein [Arabidopsis thaliana]
Length = 210
Score = 104 bits (260), Expect = 4e-22
Identities = 53/62 (85%), Positives = 58/62 (93%)
Query: 36 RSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQ 95
R+S KR+ A+FHNLSEK+RRSKINEK+KALQ LIPNSNKTDKASMLDEAIEYLKQLQLQ
Sbjct: 86 RNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQ 145
Query: 96 VQ 97
VQ
Sbjct: 146 VQ 147
>gb|AAC33213.1| Unknown protein [Arabidopsis thaliana] gi|26449609|dbj|BAC41930.1|
putative transcription factor BHLH8 [Arabidopsis
thaliana] gi|18026964|gb|AAL55715.1| putative
transcription factor BHLH8 [Arabidopsis thaliana]
gi|30681206|ref|NP_849626.1| phytochrome interacting
factor 3 (PIF3) [Arabidopsis thaliana]
gi|15217533|ref|NP_172424.1| phytochrome interacting
factor 3 (PIF3) [Arabidopsis thaliana]
gi|3929586|gb|AAC95156.1| phytochrome interacting factor
3 [Arabidopsis thaliana] gi|25402552|pir||H86228
hypothetical protein [imported] - Arabidopsis thaliana
gi|20532207|sp|O80536|PIF3_ARATH Phytochrome-interacting
factor 3 (Phytochrome-associated protein 3) (Basic
helix-loop-helix protein 8) (bHLH8) (AtbHLH008)
Length = 524
Score = 100 bits (249), Expect = 7e-21
Identities = 52/71 (73%), Positives = 59/71 (82%), Gaps = 2/71 (2%)
Query: 30 KAAPPPRSS--SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIE 87
K A P R+ SKRSR+AE HNLSE+RRR +INEK++ALQ LIPN NK DKASMLDEAIE
Sbjct: 328 KEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIE 387
Query: 88 YLKQLQLQVQV 98
YLK LQLQVQ+
Sbjct: 388 YLKSLQLQVQI 398
>gb|AAC99771.1| phytochrome-associated protein 3 [Arabidopsis thaliana]
Length = 524
Score = 99.8 bits (247), Expect = 1e-20
Identities = 52/71 (73%), Positives = 58/71 (81%), Gaps = 2/71 (2%)
Query: 30 KAAPPPRSS--SKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIE 87
K A P R+ SKRSR AE HNLSE+RRR +INEK++ALQ LIPN NK DKASMLDEAIE
Sbjct: 328 KEAGPSRTGLGSKRSRLAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIE 387
Query: 88 YLKQLQLQVQV 98
YLK LQLQVQ+
Sbjct: 388 YLKSLQLQVQI 398
>gb|AAN78308.1| putative bHLH transcription factor [Arabidopsis thaliana]
gi|28372351|dbj|BAC56979.1| PIF3 like basic Helix Loop
Helix protein [Arabidopsis thaliana]
gi|30680909|ref|NP_179608.2| basic helix-loop-helix
(bHLH) family protein [Arabidopsis thaliana]
Length = 478
Score = 97.4 bits (241), Expect = 6e-20
Identities = 49/82 (59%), Positives = 62/82 (74%)
Query: 24 SELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLD 83
S +K A +S+KRSRAAE HNLSE++RR +INE++KALQ LIP NK+DKASMLD
Sbjct: 265 SRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLD 324
Query: 84 EAIEYLKQLQLQVQVSFLSLKM 105
EAIEY+K LQLQ+Q+ + M
Sbjct: 325 EAIEYMKSLQLQIQMMSMGCGM 346
>gb|AAD24380.1| unknown protein [Arabidopsis thaliana] gi|25411969|pir||A84586
hypothetical protein At2g20180 [imported] - Arabidopsis
thaliana
Length = 490
Score = 97.4 bits (241), Expect = 6e-20
Identities = 49/82 (59%), Positives = 62/82 (74%)
Query: 24 SELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLD 83
S +K A +S+KRSRAAE HNLSE++RR +INE++KALQ LIP NK+DKASMLD
Sbjct: 265 SRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLD 324
Query: 84 EAIEYLKQLQLQVQVSFLSLKM 105
EAIEY+K LQLQ+Q+ + M
Sbjct: 325 EAIEYMKSLQLQIQMMSMGCGM 346
>ref|NP_849996.1| basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana]
Length = 407
Score = 97.4 bits (241), Expect = 6e-20
Identities = 49/82 (59%), Positives = 62/82 (74%)
Query: 24 SELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLD 83
S +K A +S+KRSRAAE HNLSE++RR +INE++KALQ LIP NK+DKASMLD
Sbjct: 194 SRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLD 253
Query: 84 EAIEYLKQLQLQVQVSFLSLKM 105
EAIEY+K LQLQ+Q+ + M
Sbjct: 254 EAIEYMKSLQLQIQMMSMGCGM 275
>gb|AAU10768.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|50511445|gb|AAT77368.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 505
Score = 97.1 bits (240), Expect = 8e-20
Identities = 49/68 (72%), Positives = 56/68 (82%)
Query: 38 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
SSKRSR AE HNLSE+RRR +INEK++ALQ LIPN NK DKASML+EAIEYLK LQLQVQ
Sbjct: 330 SSKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQ 389
Query: 98 VSFLSLKM 105
+ + M
Sbjct: 390 MMSMGTGM 397
>dbj|BAD81566.1| putative BP-5 protein [Oryza sativa (japonica cultivar-group)]
Length = 565
Score = 97.1 bits (240), Expect = 8e-20
Identities = 48/61 (78%), Positives = 54/61 (87%)
Query: 38 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
S+KRSR AE HNLSE+RRR +INEK++ALQ LIPN NK DKASMLDEAIEYLK LQLQVQ
Sbjct: 307 STKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQ 366
Query: 98 V 98
+
Sbjct: 367 M 367
>ref|NP_911152.1| transcription factor BHLH9-like protein [Oryza sativa (japonica
cultivar-group)] gi|24059945|dbj|BAC21408.1|
transcription factor BHLH9-like protein [Oryza sativa
(japonica cultivar-group)] gi|23495742|dbj|BAC19953.1|
transcription factor BHLH9-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 417
Score = 96.7 bits (239), Expect = 1e-19
Identities = 47/82 (57%), Positives = 63/82 (76%)
Query: 21 DEGSELPSSKAAPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKAS 80
D SE+ ++ +R+RAAE HNLSE+RRR +INEKL+ALQ L+P+ NKTDKAS
Sbjct: 206 DSLSEVADETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKTDKAS 265
Query: 81 MLDEAIEYLKQLQLQVQVSFLS 102
+LDEAIEYLK LQ+QVQ+ +++
Sbjct: 266 ILDEAIEYLKSLQMQVQIMWMT 287
>emb|CAD29449.1| phytochrome interacting factor 4 [Arabidopsis thaliana]
gi|18026966|gb|AAL55716.1| putative transcription factor
BHLH9 [Arabidopsis thaliana]
gi|28201855|sp|Q8W2F3|PIF4_ARATH Phytochrome-interacting
factor 4 (Basic helix-loop-helix protein 9) (bHLH9)
(AtbHLH009) (Short under red-light 2)
gi|30689218|ref|NP_565991.2| phytochrome-interacting
factor 4 (PIF4) / basic helix-loop-helix protein 9
(bHLH9) / short under red-light 2 (SRL2) [Arabidopsis
thaliana]
Length = 430
Score = 94.7 bits (234), Expect = 4e-19
Identities = 46/68 (67%), Positives = 59/68 (86%)
Query: 38 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
S++RSRAAE HNLSE+RRR +INE++KALQ LIP+ +KTDKAS+LDEAI+YLK LQLQ+Q
Sbjct: 252 SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
Query: 98 VSFLSLKM 105
V ++ M
Sbjct: 312 VMWMGSGM 319
>pir||H84860 hypothetical protein At2g43010 [imported] - Arabidopsis thaliana
Length = 423
Score = 94.7 bits (234), Expect = 4e-19
Identities = 46/68 (67%), Positives = 59/68 (86%)
Query: 38 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
S++RSRAAE HNLSE+RRR +INE++KALQ LIP+ +KTDKAS+LDEAI+YLK LQLQ+Q
Sbjct: 247 SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 306
Query: 98 VSFLSLKM 105
V ++ M
Sbjct: 307 VMWMGSGM 314
>ref|NP_850381.1| phytochrome-interacting factor 4 (PIF4) / basic helix-loop-helix
protein 9 (bHLH9) / short under red-light 2 (SRL2)
[Arabidopsis thaliana]
Length = 428
Score = 94.7 bits (234), Expect = 4e-19
Identities = 46/68 (67%), Positives = 59/68 (86%)
Query: 38 SSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQ 97
S++RSRAAE HNLSE+RRR +INE++KALQ LIP+ +KTDKAS+LDEAI+YLK LQLQ+Q
Sbjct: 252 SNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQ 311
Query: 98 VSFLSLKM 105
V ++ M
Sbjct: 312 VMWMGSGM 319
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,117,177
Number of Sequences: 2540612
Number of extensions: 7715803
Number of successful extensions: 42655
Number of sequences better than 10.0: 2164
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 990
Number of HSP's that attempted gapping in prelim test: 41041
Number of HSP's gapped (non-prelim): 2295
length of query: 141
length of database: 863,360,394
effective HSP length: 117
effective length of query: 24
effective length of database: 566,108,790
effective search space: 13586610960
effective search space used: 13586610960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC149211.1