BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149210.5 + phase: 0
(128 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAU94411.1| At5g59800 [Arabidopsis thaliana] gi|9757900|dbj|B... 64 8e-10
ref|XP_480617.1| unknown protein [Oryza sativa (japonica cultiva... 52 4e-06
dbj|BAA97474.1| unnamed protein product [Arabidopsis thaliana] g... 45 3e-04
emb|CAE05215.3| OSJNBa0070C17.22 [Oryza sativa (japonica cultiva... 42 0.003
gb|AAW56446.1| methyl-binding domain protein MBD113 [Zea mays] 42 0.004
dbj|BAA97061.1| unnamed protein product [Arabidopsis thaliana] 39 0.028
ref|NP_188116.1| PHD finger transcription factor, putative [Arab... 39 0.028
ref|XP_512241.1| PREDICTED: similar to methyl-CpG binding domain... 38 0.048
emb|CAD39866.2| OSJNBb0058J09.3 [Oryza sativa (japonica cultivar... 38 0.063
gb|AAC68877.1| methyl-CpG binding domain-containing protein MBD3... 37 0.11
ref|XP_343163.2| PREDICTED: similar to methyl-CpG binding domain... 37 0.11
emb|CAB62328.1| putative protein [Arabidopsis thaliana] gi|23296... 37 0.14
gb|AAM63666.1| unknown [Arabidopsis thaliana] 37 0.14
dbj|BAD29189.1| hypothetical protein [Oryza sativa (japonica cul... 36 0.18
gb|AAQ97812.1| methyl-CpG binding domain protein 3 [Danio rerio]... 35 0.53
ref|XP_588804.1| PREDICTED: similar to methyl-CpG binding domain... 35 0.53
gb|AAN15545.1| unknown protein [Arabidopsis thaliana] gi|2253113... 35 0.53
dbj|BAA97466.1| unnamed protein product [Arabidopsis thaliana] g... 35 0.53
gb|AAH71531.1| Methyl-CpG binding domain protein 3a [Danio rerio] 35 0.53
gb|AAK40309.1| putative methyl-binding domain protein MBD108 [Ze... 34 0.91
>gb|AAU94411.1| At5g59800 [Arabidopsis thaliana] gi|9757900|dbj|BAB08347.1| unnamed
protein product [Arabidopsis thaliana]
gi|50198785|gb|AAT70426.1| At5g59800 [Arabidopsis
thaliana] gi|15238536|ref|NP_200788.1|
methyl-CpG-binding domain-containing protein
[Arabidopsis thaliana]
Length = 306
Score = 63.9 bits (154), Expect = 8e-10
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 3 RSMDVEMEHLNLNRNVMNLREKELQIVVQSPSKVEVPDGWLVEQRPRPSNPNHIDRYYIE 62
RS+ +L +RN + + + LQ +PDGW+VE++PR S+ +HIDR YIE
Sbjct: 147 RSLVSVERYLRESRNSIEQQLRVLQNRRGHSKDFRLPDGWIVEEKPRRSS-SHIDRSYIE 205
Query: 63 PHTGQKFRSLVSVQRYL 79
P TG KFRS+ +V+RYL
Sbjct: 206 PGTGNKFRSMAAVERYL 222
Score = 58.5 bits (140), Expect = 3e-08
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 22 REKELQIVVQSPSK-VEVPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLN 80
R K+ V+ SK +P GW VE+ PR N ++ID+YY+E TG++FRSLVSV+RYL
Sbjct: 99 RTKQDHCGVEYASKGFRLPRGWSVEEVPR-KNSHYIDKYYVERKTGKRFRSLVSVERYLR 157
Query: 81 GGETGDYLPTQRIISENNNNVSSNF 105
E+ + + Q + +N S +F
Sbjct: 158 --ESRNSIEQQLRVLQNRRGHSKDF 180
Score = 53.9 bits (128), Expect = 8e-07
Identities = 28/65 (43%), Positives = 39/65 (59%), Gaps = 1/65 (1%)
Query: 22 REKELQIVVQSPSKVEVPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNG 81
RE +LQI + ++ GW V RPR SN +D Y+IEP TG++F SL ++ R+L
Sbjct: 15 RETQLQIADPTSFCGKIMPGWTVVNRPRSSNNGVVDTYFIEPGTGRQFSSLEAIHRHL-A 73
Query: 82 GETGD 86
GE D
Sbjct: 74 GEVND 78
>ref|XP_480617.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|45735807|dbj|BAD12843.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|42761315|dbj|BAD11558.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 422
Score = 51.6 bits (122), Expect = 4e-06
Identities = 31/74 (41%), Positives = 42/74 (55%), Gaps = 8/74 (10%)
Query: 38 VPDGWLVEQRPRPSNPN-HIDRYYIEPHTGQKFRSLVSVQRYLNGGETGDYL--PTQRII 94
+PDGW E RPR + N D YYI+P +G +FRSL V R+L G+ + P +R I
Sbjct: 343 LPDGWWKEDRPRKNGSNLKTDPYYIDPVSGYEFRSLKDVHRFLKSGDIYKCIVRPRKRTI 402
Query: 95 S-----ENNNNVSS 103
EN ++VSS
Sbjct: 403 QDPCTIENQSHVSS 416
>dbj|BAA97474.1| unnamed protein product [Arabidopsis thaliana]
gi|28416643|gb|AAO42852.1| At5g59380 [Arabidopsis
thaliana] gi|15238389|ref|NP_200746.1|
methyl-CpG-binding domain-containing protein
[Arabidopsis thaliana]
Length = 225
Score = 45.4 bits (106), Expect = 3e-04
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 32 SPSKVEVPDGWLVEQRPRPSNPN--HIDRYYIEPHTGQKFRSLVSVQRYLNGG 82
+P +P GW VE + R S +D+YY EP+TG+KFRS V YL G
Sbjct: 75 APGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLEHG 127
>emb|CAE05215.3| OSJNBa0070C17.22 [Oryza sativa (japonica cultivar-group)]
gi|50928693|ref|XP_473874.1| OSJNBa0070C17.22 [Oryza
sativa (japonica cultivar-group)]
Length = 438
Score = 42.0 bits (97), Expect = 0.003
Identities = 22/54 (40%), Positives = 29/54 (52%), Gaps = 3/54 (5%)
Query: 33 PSKVEVPDGWLVEQRPRPSNPNHI---DRYYIEPHTGQKFRSLVSVQRYLNGGE 83
P+ +P GWL E RPR + D +YI+P +FRS VQRYL G+
Sbjct: 30 PAGEGLPHGWLKEYRPRKNQSGSRVKGDTFYIDPTNMYEFRSQKDVQRYLESGD 83
>gb|AAW56446.1| methyl-binding domain protein MBD113 [Zea mays]
Length = 292
Score = 41.6 bits (96), Expect = 0.004
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 38 VPDGWLVEQRPRPSNPN-HIDRYYIEPHTGQKFRSLVSVQRYLNGGETG--DYLPTQRII 94
+PDGW+ E R N D+YY +P + + FR+L SV YL GE YLP + +I
Sbjct: 30 LPDGWVKETISRKFNDGIRKDQYYTDPVSHRVFRTLKSVLSYLGTGEISRHSYLPRRNVI 89
>dbj|BAA97061.1| unnamed protein product [Arabidopsis thaliana]
Length = 1145
Score = 38.9 bits (89), Expect = 0.028
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 1 MNRSMDVEMEHLNLNRNVMNLREKE--LQIVVQSPSKVEVPDGWLVEQRPRPSNPNHIDR 58
+N V L +++ + + KE ++ + KV W +E+R R + H+D
Sbjct: 213 LNNGSKVSPNELIMSKTCLKIDPKEDPRPLLYKYVCKVLTAARWKIEKRERSAGRKHVDT 272
Query: 59 YYIEPHTGQKFRSLVSVQRYLNG 81
+YI P G+KFR S + L G
Sbjct: 273 FYISPE-GRKFREFGSAWKALGG 294
>ref|NP_188116.1| PHD finger transcription factor, putative [Arabidopsis thaliana]
Length = 1189
Score = 38.9 bits (89), Expect = 0.028
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 1 MNRSMDVEMEHLNLNRNVMNLREKE--LQIVVQSPSKVEVPDGWLVEQRPRPSNPNHIDR 58
+N V L +++ + + KE ++ + KV W +E+R R + H+D
Sbjct: 213 LNNGSKVSPNELIMSKTCLKIDPKEDPRPLLYKYVCKVLTAARWKIEKRERSAGRKHVDT 272
Query: 59 YYIEPHTGQKFRSLVSVQRYLNG 81
+YI P G+KFR S + L G
Sbjct: 273 FYISPE-GRKFREFGSAWKALGG 294
>ref|XP_512241.1| PREDICTED: similar to methyl-CpG binding domain protein 3 [Pan
troglodytes] gi|3800803|gb|AAC68876.1| methyl-CpG
binding domain-containing protein MBD3 [Homo sapiens]
gi|50400820|sp|O95983|MBD3_HUMAN Methyl-CpG-binding
domain protein 3 (Methyl-CpG binding protein MBD3)
gi|3850564|gb|AAC72104.1| methyl-CpG binding protein
MBD3 [Homo sapiens] gi|4505119|ref|NP_003917.1|
methyl-CpG binding domain protein 3 [Homo sapiens]
Length = 291
Score = 38.1 bits (87), Expect = 0.048
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 38 VPDGWLVEQRPRPS--NPNHIDRYYIEPHTGQKFRSLVSVQRYLNGG---ETGDYLPTQR 92
+P GW E+ PR S + H D +Y P +G+KFRS + RYL G T D+ +
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYSP-SGKKFRSKPQLARYLGGSMDLSTFDFRTGKM 69
Query: 93 IISENNNN 100
++S+ N +
Sbjct: 70 LMSKMNKS 77
>emb|CAD39866.2| OSJNBb0058J09.3 [Oryza sativa (japonica cultivar-group)]
gi|50922307|ref|XP_471514.1| OSJNBb0058J09.3 [Oryza
sativa (japonica cultivar-group)]
Length = 385
Score = 37.7 bits (86), Expect = 0.063
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 38 VPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNGGETGDYLPTQRIISEN 97
+P GW++E R N N + ++Y+ P G + S V Y+N E + +
Sbjct: 125 LPKGWIIEVRAGGKNMNKMYKFYVYPPAGVRLFSKEDVLLYINKSEITGFDTNGECDTRT 184
Query: 98 NNNVSSNFTF 107
+N+ +N F
Sbjct: 185 KDNILANVEF 194
Score = 35.4 bits (80), Expect = 0.31
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 23 EKELQIVVQSPSKVE-----VPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQR 77
+KE+Q V+ + E +PDGW++E + I RYY P +G F V +
Sbjct: 25 KKEIQQDVEDLEEEEERPGWLPDGWIMEVYQ--GDDGTIYRYYTSPISGLTFTMKSEVLQ 82
Query: 78 YLNGGETGDYLPTQRIISEN---NNNVSSNFTFT 108
YL G +L ++ ++N NN+V + T T
Sbjct: 83 YLFSGMDERFLESKNCAADNQLINNSVYVSPTMT 116
>gb|AAC68877.1| methyl-CpG binding domain-containing protein MBD3 [Mus musculus]
gi|5731992|gb|AAD48909.1| methyl-CpG binding
domain-containing protein 3 [Mus musculus domesticus]
gi|50401209|sp|Q9Z2D8|MBD3_MOUSE Methyl-CpG-binding
domain protein 3 (Methyl-CpG binding protein MBD3)
gi|7305261|ref|NP_038623.1| methyl-CpG binding domain
protein 3 [Mus musculus]
Length = 285
Score = 37.0 bits (84), Expect = 0.11
Identities = 23/68 (33%), Positives = 37/68 (53%), Gaps = 6/68 (8%)
Query: 38 VPDGWLVEQRPRPS--NPNHIDRYYIEPHTGQKFRSLVSVQRYLNGG---ETGDYLPTQR 92
+P GW E+ PR S + H D +Y P +G+KFRS + RYL G T D+ +
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYSP-SGKKFRSKPQLARYLGGSMDLSTFDFRTGKM 69
Query: 93 IISENNNN 100
++++ N +
Sbjct: 70 LMNKMNKS 77
>ref|XP_343163.2| PREDICTED: similar to methyl-CpG binding domain-containing protein
MBD3 [Rattus norvegicus]
Length = 286
Score = 37.0 bits (84), Expect = 0.11
Identities = 23/68 (33%), Positives = 37/68 (53%), Gaps = 6/68 (8%)
Query: 38 VPDGWLVEQRPRPS--NPNHIDRYYIEPHTGQKFRSLVSVQRYLNGG---ETGDYLPTQR 92
+P GW E+ PR S + H D +Y P +G+KFRS + RYL G T D+ +
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYSP-SGKKFRSKPQLARYLGGSMDLSTFDFRTGKM 69
Query: 93 IISENNNN 100
++++ N +
Sbjct: 70 LMNKMNKS 77
>emb|CAB62328.1| putative protein [Arabidopsis thaliana]
gi|23296870|gb|AAN13191.1| unknown protein [Arabidopsis
thaliana] gi|17380750|gb|AAL36205.1| unknown protein
[Arabidopsis thaliana] gi|15232591|ref|NP_190242.1|
methyl-CpG-binding domain-containing protein
[Arabidopsis thaliana] gi|11290524|pir||T45595
hypothetical protein F12A12.100 - Arabidopsis thaliana
Length = 182
Score = 36.6 bits (83), Expect = 0.14
Identities = 20/47 (42%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 38 VPDGWLVEQRPRPSNPNH--IDRYYIEPHTGQKFRSLVSVQRYLNGG 82
+P W E R R S +D++Y EP TG+KFRS V YL G
Sbjct: 35 LPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHG 81
>gb|AAM63666.1| unknown [Arabidopsis thaliana]
Length = 182
Score = 36.6 bits (83), Expect = 0.14
Identities = 20/47 (42%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 38 VPDGWLVEQRPRPSNPNH--IDRYYIEPHTGQKFRSLVSVQRYLNGG 82
+P W E R R S +D++Y EP TG+KFRS V YL G
Sbjct: 35 LPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHG 81
>dbj|BAD29189.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 293
Score = 36.2 bits (82), Expect = 0.18
Identities = 23/65 (35%), Positives = 30/65 (45%), Gaps = 2/65 (3%)
Query: 29 VVQSPSKVEV-PDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNGGETGDY 87
++ P K EV P GW +E R D+YY KFRS VQ +L+ G+
Sbjct: 151 ILVHPRKDEVDPTGWDIENHLRNDQKTK-DKYYRHKDYNHKFRSKPEVQYFLDTGKAAGA 209
Query: 88 LPTQR 92
P QR
Sbjct: 210 TPIQR 214
>gb|AAQ97812.1| methyl-CpG binding domain protein 3 [Danio rerio]
gi|47086507|ref|NP_997934.1| methyl-CpG binding domain
protein 3a [Danio rerio]
Length = 273
Score = 34.7 bits (78), Expect = 0.53
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 38 VPDGWLVEQRPRPS--NPNHIDRYYIEPHTGQKFRSLVSVQRYLNGG---ETGDYLPTQR 92
+P+GW +E+ R S + D YY P TG+KFRS + RYL + D+ +
Sbjct: 11 LPNGWKMEEVTRKSGLSAGKSDVYYFSP-TGKKFRSKPQLVRYLGKSMDLSSFDFRTGKM 69
Query: 93 IISENNNN 100
++S+ N N
Sbjct: 70 LMSKLNKN 77
>ref|XP_588804.1| PREDICTED: similar to methyl-CpG binding domain protein 4,
partial [Bos taurus]
Length = 524
Score = 34.7 bits (78), Expect = 0.53
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 38 VPDGW--LVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLN-GGET 84
VP GW +V+QR D ++I P GQKFRS VS+ YL+ GET
Sbjct: 51 VPCGWERVVKQRLSGKTAGKYDVHFISPQ-GQKFRSRVSLVNYLHQSGET 99
>gb|AAN15545.1| unknown protein [Arabidopsis thaliana] gi|22531130|gb|AAM97069.1|
unknown protein [Arabidopsis thaliana]
Length = 746
Score = 34.7 bits (78), Expect = 0.53
Identities = 16/63 (25%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
Query: 27 QIVVQSPSKVEVPDGWL--VEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNGGET 84
+++V+ + +P+GW+ +E R D ++I+P + F+S RY+ G
Sbjct: 28 KVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETGNI 87
Query: 85 GDY 87
G Y
Sbjct: 88 GHY 90
>dbj|BAA97466.1| unnamed protein product [Arabidopsis thaliana]
gi|15242941|ref|NP_200036.1| expressed protein
[Arabidopsis thaliana]
Length = 746
Score = 34.7 bits (78), Expect = 0.53
Identities = 16/63 (25%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
Query: 27 QIVVQSPSKVEVPDGWL--VEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNGGET 84
+++V+ + +P+GW+ +E R D ++I+P + F+S RY+ G
Sbjct: 28 KVIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETGNI 87
Query: 85 GDY 87
G Y
Sbjct: 88 GHY 90
>gb|AAH71531.1| Methyl-CpG binding domain protein 3a [Danio rerio]
Length = 273
Score = 34.7 bits (78), Expect = 0.53
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 38 VPDGWLVEQRPRPS--NPNHIDRYYIEPHTGQKFRSLVSVQRYLNGG---ETGDYLPTQR 92
+P+GW +E+ R S + D YY P TG+KFRS + RYL + D+ +
Sbjct: 11 LPNGWKMEEVTRKSGLSAGKSDVYYFSP-TGKKFRSKPQLVRYLGKSMDLSSFDFRTGKM 69
Query: 93 IISENNNN 100
++S+ N N
Sbjct: 70 LMSKLNKN 77
>gb|AAK40309.1| putative methyl-binding domain protein MBD108 [Zea mays]
Length = 297
Score = 33.9 bits (76), Expect = 0.91
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 30 VQSPSKVEVPDGWLVEQRPR-PSNPNHIDRYYIEPHTGQKFRSLVSVQRYL 79
+ P+ + P GW + R R D YY P TG+K RSLV V R+L
Sbjct: 133 IDKPNIAQPPHGWERQIRIRGEGGTKFADVYYTSP-TGRKLRSLVEVDRFL 182
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,791,518
Number of Sequences: 2540612
Number of extensions: 10169745
Number of successful extensions: 23050
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 23015
Number of HSP's gapped (non-prelim): 59
length of query: 128
length of database: 863,360,394
effective HSP length: 104
effective length of query: 24
effective length of database: 599,136,746
effective search space: 14379281904
effective search space used: 14379281904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC149210.5