BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149207.4 - phase: 0
(168 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97164.1| unnamed protein product [Arabidopsis thaliana] g... 49 4e-05
dbj|BAB02037.1| unnamed protein product [Arabidopsis thaliana] 47 2e-04
ref|XP_641855.1| hypothetical protein DDB0205024 [Dictyostelium ... 47 2e-04
ref|NP_188375.1| F-box family protein [Arabidopsis thaliana] 47 2e-04
dbj|BAB01315.1| unnamed protein product [Arabidopsis thaliana] g... 47 2e-04
emb|CAA80976.1| Hairy-wing protein [Drosophila virilis] gi|58605... 47 3e-04
gb|AAW59010.1| suppressor of Hairy wing [Drosophila virilis] 47 3e-04
dbj|BAB01247.1| unnamed protein product [Arabidopsis thaliana] 46 3e-04
ref|NP_188911.1| F-box family protein [Arabidopsis thaliana] 46 3e-04
emb|CAG60029.1| unnamed protein product [Candida glabrata CBS138... 46 5e-04
gb|EAK98851.1| hypothetical protein CaO19.5430 [Candida albicans... 45 6e-04
gb|AAW59015.1| suppressor of Hairy wing [Drosophila americana] 45 6e-04
gb|AAW59014.1| suppressor of Hairy wing [Drosophila americana] g... 45 6e-04
dbj|BAB01245.1| unnamed protein product [Arabidopsis thaliana] 45 8e-04
gb|AAY78752.1| F-box family protein [Arabidopsis thaliana] gi|15... 45 8e-04
gb|AAF56278.2| CG31132-PA [Drosophila melanogaster] gi|24649631|... 45 8e-04
gb|AAM15177.1| hypothetical protein [Arabidopsis thaliana] gi|38... 45 8e-04
gb|AAM11181.1| LD40380p [Drosophila melanogaster] 45 8e-04
gb|AAW59016.1| suppressor of Hairy wing [Drosophila ezoana] 45 8e-04
emb|CAA97903.1| NAB3 [Saccharomyces cerevisiae] gi|6325066|ref|N... 45 0.001
>dbj|BAA97164.1| unnamed protein product [Arabidopsis thaliana]
gi|15238057|ref|NP_199541.1| F-box family protein
[Arabidopsis thaliana]
Length = 416
Score = 49.3 bits (116), Expect = 4e-05
Identities = 29/71 (40%), Positives = 41/71 (56%), Gaps = 1/71 (1%)
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLADITDL-LSTATEH 72
LP +L+ EIL RV + + QLRS CK W +L + +F +KHL K+ D +L LS +
Sbjct: 46 LPGDLLEEILCRVPATSLKQLRSTCKQWNNLFNNGRFTRKHLDKAPKDFQNLMLSDSRVF 105
Query: 73 RKSFVSHQIPN 83
S H IP+
Sbjct: 106 SMSVSFHGIPS 116
>dbj|BAB02037.1| unnamed protein product [Arabidopsis thaliana]
Length = 374
Score = 47.4 bits (111), Expect = 2e-04
Identities = 20/58 (34%), Positives = 39/58 (66%)
Query: 9 SPTTILPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLADITDLL 66
SP ++L +L+ +IL+RV + + ++LRS CK W +++ D +F++KH + + D+L
Sbjct: 7 SPMSVLTEDLVEDILSRVPATSLVRLRSTCKQWNAILNDRRFIKKHFDTAEKEYLDML 64
>ref|XP_641855.1| hypothetical protein DDB0205024 [Dictyostelium discoideum]
gi|60469897|gb|EAL67880.1| hypothetical protein
DDB0205024 [Dictyostelium discoideum]
Length = 3103
Score = 47.4 bits (111), Expect = 2e-04
Identities = 28/91 (30%), Positives = 48/91 (51%), Gaps = 9/91 (9%)
Query: 34 LRSVCKWWKSLVVDDQFVQKHLHKSLADITDLLSTATEHRKSFVSHQIPNQLQEEEEEDD 93
++SVC+ V D+F H + D+ + L T +E + ++++ N ++ EEE+D
Sbjct: 1898 VKSVCE------VIDEF---HFFINETDVRNELLTGSEIKDDKINNKDENNKEQAEEEED 1948
Query: 94 DDDDDDEEVDEEEAAKRARMNRLAELDNLLV 124
D+DDDD E DEE + + + N LV
Sbjct: 1949 DEDDDDNEEDEEMGEEEKELREIENDQNNLV 1979
Score = 33.5 bits (75), Expect = 2.3
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 78 SHQIPNQLQEEEEEDDDDDDDDEEVDEEE 106
+H+ + ++EE++ ++DDDDDEE D E+
Sbjct: 2878 NHEEEEEKEQEEQQVENDDDDDEENDNEQ 2906
>ref|NP_188375.1| F-box family protein [Arabidopsis thaliana]
Length = 373
Score = 47.4 bits (111), Expect = 2e-04
Identities = 20/58 (34%), Positives = 39/58 (66%)
Query: 9 SPTTILPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSLADITDLL 66
SP ++L +L+ +IL+RV + + ++LRS CK W +++ D +F++KH + + D+L
Sbjct: 6 SPMSVLTEDLVEDILSRVPATSLVRLRSTCKQWNAILNDRRFIKKHFDTAEKEYLDML 63
>dbj|BAB01315.1| unnamed protein product [Arabidopsis thaliana]
gi|15230840|ref|NP_189173.1| F-box family protein
[Arabidopsis thaliana]
Length = 361
Score = 47.0 bits (110), Expect = 2e-04
Identities = 21/45 (46%), Positives = 29/45 (63%)
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKS 58
LP +L++EIL RV + + +LRS CK W L D +F KH HK+
Sbjct: 6 LPEDLLVEILCRVPATSLKRLRSTCKLWNHLYNDKRFKSKHCHKA 50
>emb|CAA80976.1| Hairy-wing protein [Drosophila virilis]
gi|586051|sp|Q08876|SUHW_DROVI Suppressor of hairy wing
protein
Length = 899
Score = 46.6 bits (109), Expect = 3e-04
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 61 DITDLLSTATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELD 120
D +L + A E+ + FV + +E++DDDDDD+DE V E A +R+ N L E+
Sbjct: 163 DEVELGAGAKENGEEFVVSGV------DEDDDDDDDDEDEGVVEGGAKRRSGNNELKEMV 216
Query: 121 NLLVG--------VRSIKRELEIIKVDT---LAMKDRMKCLESFLK 155
+ G V+S+K+ LE + D+ L D +K LE K
Sbjct: 217 EHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEK 262
>gb|AAW59010.1| suppressor of Hairy wing [Drosophila virilis]
Length = 359
Score = 46.6 bits (109), Expect = 3e-04
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 61 DITDLLSTATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELD 120
D +L + A E+ + FV + +E++DDDDDD+DE V E A +R+ N L E+
Sbjct: 6 DEVELGAGAKENGEEFVVSGV------DEDDDDDDDDEDEGVVEGGAKRRSGNNELKEMV 59
Query: 121 NLLVG--------VRSIKRELEIIKVDT---LAMKDRMKCLESFLK 155
+ G V+S+K+ LE + D+ L D +K LE K
Sbjct: 60 EHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEK 105
>dbj|BAB01247.1| unnamed protein product [Arabidopsis thaliana]
Length = 379
Score = 46.2 bits (108), Expect = 3e-04
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKS 58
LP++L+ +IL+RV + + +LRS C+ W +L+ D +F +KH HK+
Sbjct: 5 LPLDLVEKILSRVPATSLKRLRSTCRRWNALLKDRRFTEKHFHKA 49
>ref|NP_188911.1| F-box family protein [Arabidopsis thaliana]
Length = 378
Score = 46.2 bits (108), Expect = 3e-04
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKS 58
LP++L+ +IL+RV + + +LRS C+ W +L+ D +F +KH HK+
Sbjct: 4 LPLDLVEKILSRVPATSLKRLRSTCRRWNALLKDRRFTEKHFHKA 48
>emb|CAG60029.1| unnamed protein product [Candida glabrata CBS138]
gi|50289331|ref|XP_447096.1| unnamed protein product
[Candida glabrata]
Length = 163
Score = 45.8 bits (107), Expect = 5e-04
Identities = 32/95 (33%), Positives = 50/95 (51%), Gaps = 4/95 (4%)
Query: 47 DDQFVQKHLHKSLADITDLLST---ATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVD 103
D +FV + LA +L+ST TE +K F ++ N + +E+EDDDDD+DD+E D
Sbjct: 68 DFKFVLRKDPIKLARAEELISTNALITEAKKQFNENENQNLKRYKEDEDDDDDEDDDE-D 126
Query: 104 EEEAAKRARMNRLAELDNLLVGVRSIKRELEIIKV 138
++E +K E V V+ K+ + KV
Sbjct: 127 DDEDSKPKEAPVTVETQESTVPVKEKKKRTKKAKV 161
>gb|EAK98851.1| hypothetical protein CaO19.5430 [Candida albicans SC5314]
gi|46439433|gb|EAK98751.1| hypothetical protein
CaO19.12885 [Candida albicans SC5314]
Length = 219
Score = 45.4 bits (106), Expect = 6e-04
Identities = 21/46 (45%), Positives = 30/46 (64%)
Query: 87 EEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELDNLLVGVRSIKRE 132
EEEEEDDDDDDD ++ EEE+ +AR + L+E L +K++
Sbjct: 44 EEEEEDDDDDDDSDDAPEEESTSKARSDILSEQKRLQQVEAELKKQ 89
>gb|AAW59015.1| suppressor of Hairy wing [Drosophila americana]
Length = 353
Score = 45.4 bits (106), Expect = 6e-04
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 61 DITDLLSTATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELD 120
D +L + A E+ + FV + +E++DDDDDD+D+ V E A +R+ N L E+
Sbjct: 6 DDVELGAGAKENGEEFVVSGV------DEDDDDDDDDEDDGVVEGGAKRRSGNNELKEMV 59
Query: 121 NLLVG--------VRSIKRELEIIKVDT---LAMKDRMKCLESFLK 155
+ G V+S+K+ LE + D+ L D +K LE K
Sbjct: 60 EHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEK 105
>gb|AAW59014.1| suppressor of Hairy wing [Drosophila americana]
gi|57904796|gb|AAW59013.1| suppressor of Hairy wing
[Drosophila americana] gi|57904794|gb|AAW59012.1|
suppressor of Hairy wing [Drosophila americana]
gi|57904792|gb|AAW59011.1| suppressor of Hairy wing
[Drosophila americana]
Length = 359
Score = 45.4 bits (106), Expect = 6e-04
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 61 DITDLLSTATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELD 120
D +L + A E+ + FV + +E++DDDDDD+D+ V E A +R+ N L E+
Sbjct: 6 DDVELGAGAKENGEEFVVSGV------DEDDDDDDDDEDDGVVEGGAKRRSGNNELKEMV 59
Query: 121 NLLVG--------VRSIKRELEIIKVDT---LAMKDRMKCLESFLK 155
+ G V+S+K+ LE + D+ L D +K LE K
Sbjct: 60 EHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEK 105
>dbj|BAB01245.1| unnamed protein product [Arabidopsis thaliana]
Length = 339
Score = 45.1 bits (105), Expect = 8e-04
Identities = 19/45 (42%), Positives = 32/45 (70%)
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKS 58
LP++L+ EIL+RV + + +LRS C+ W +L+ D +F +KH K+
Sbjct: 5 LPLDLVEEILSRVPATSLKRLRSTCRQWNALLKDRRFTEKHFRKA 49
>gb|AAY78752.1| F-box family protein [Arabidopsis thaliana]
gi|15228831|ref|NP_188909.1| F-box family protein
[Arabidopsis thaliana]
Length = 338
Score = 45.1 bits (105), Expect = 8e-04
Identities = 19/45 (42%), Positives = 32/45 (70%)
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKS 58
LP++L+ EIL+RV + + +LRS C+ W +L+ D +F +KH K+
Sbjct: 4 LPLDLVEEILSRVPATSLKRLRSTCRQWNALLKDRRFTEKHFRKA 48
>gb|AAF56278.2| CG31132-PA [Drosophila melanogaster] gi|24649631|ref|NP_732982.1|
CG31132-PA [Drosophila melanogaster]
Length = 2232
Score = 45.1 bits (105), Expect = 8e-04
Identities = 19/49 (38%), Positives = 31/49 (62%)
Query: 67 STATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNR 115
ST + + + ++P E+E+++DDDDDD++ DEEEA+ R R R
Sbjct: 1515 STRRNQKPTAAARRLPVANSSEDEDEEDDDDDDDDDDEEEASTRGRSRR 1563
>gb|AAM15177.1| hypothetical protein [Arabidopsis thaliana]
gi|3860278|gb|AAC73046.1| hypothetical protein
[Arabidopsis thaliana] gi|18401449|ref|NP_565653.1|
F-box family protein [Arabidopsis thaliana]
gi|25345718|pir||H84673 hypothetical protein At2g27520
[imported] - Arabidopsis thaliana
Length = 347
Score = 45.1 bits (105), Expect = 8e-04
Identities = 25/74 (33%), Positives = 42/74 (55%), Gaps = 1/74 (1%)
Query: 14 LPVELMIEILARVDSNNPLQLRSVCKWWKSLVVDDQFVQKHLHKSL-ADITDLLSTATEH 72
LP +L+ EIL+R+ + + +LR CK W +L D +F+ K HK+ D+ +LS +
Sbjct: 6 LPWDLVDEILSRLPATSLGRLRFTCKRWNALFKDPEFITKQFHKAAKQDLVLMLSNFGVY 65
Query: 73 RKSFVSHQIPNQLQ 86
S +IPN ++
Sbjct: 66 SMSTNLKEIPNNIE 79
>gb|AAM11181.1| LD40380p [Drosophila melanogaster]
Length = 1765
Score = 45.1 bits (105), Expect = 8e-04
Identities = 19/49 (38%), Positives = 31/49 (62%)
Query: 67 STATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNR 115
ST + + + ++P E+E+++DDDDDD++ DEEEA+ R R R
Sbjct: 1048 STRRNQKPTAAARRLPVANSSEDEDEEDDDDDDDDDDEEEASTRGRSRR 1096
>gb|AAW59016.1| suppressor of Hairy wing [Drosophila ezoana]
Length = 361
Score = 45.1 bits (105), Expect = 8e-04
Identities = 33/106 (31%), Positives = 53/106 (49%), Gaps = 15/106 (14%)
Query: 61 DITDLLSTATEHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELD 120
D +L A E+ + FV + E++++DDDDD+D + V E A +R+ N L E+
Sbjct: 6 DDVELAGGAKENGEEFVVSGV----DEDDDDDDDDDEDGDGVVEGGAKRRSGNNELKEMV 61
Query: 121 NLLVG--------VRSIKRELEIIKVDT---LAMKDRMKCLESFLK 155
+ G V+S+K+ LE + D+ L D +K LE K
Sbjct: 62 EHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEK 107
>emb|CAA97903.1| NAB3 [Saccharomyces cerevisiae] gi|6325066|ref|NP_015134.1| Single
stranded DNA binding protein; acidic ribonucleoprotein;
required for termination of non-poly(A) transcripts and
efficient splicing; interacts with Nrd1p; Nab3p
[Saccharomyces cerevisiae]
gi|730104|sp|P38996|NAB3_YEAST Nuclear polyadenylated
RNA-binding protein 3 gi|476220|gb|AAA81910.1| Nab3p
Length = 802
Score = 44.7 bits (104), Expect = 0.001
Identities = 30/73 (41%), Positives = 38/73 (51%), Gaps = 8/73 (10%)
Query: 83 NQLQEEEEEDDDDDDDDEEVDEEEAAKRARMNRLAELDNLLVGVRSIKRELEIIKVDTLA 142
N+ +EEEEEDDDDDDDD++ DEEE + DN VG S + E D
Sbjct: 107 NEEEEEEEEDDDDDDDDDDDDEEEEEEEEEEGN----DNSSVGSDSAAEDGE----DEED 158
Query: 143 MKDRMKCLESFLK 155
KD+ K E L+
Sbjct: 159 KKDKTKDKEVELR 171
Score = 37.7 bits (86), Expect = 0.12
Identities = 15/36 (41%), Positives = 26/36 (71%)
Query: 71 EHRKSFVSHQIPNQLQEEEEEDDDDDDDDEEVDEEE 106
EH++ + + +EEEEE++DDDDDD++ D++E
Sbjct: 93 EHQQKGGNDDDDDDNEEEEEEEEDDDDDDDDDDDDE 128
Score = 32.0 bits (71), Expect = 6.8
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
Query: 80 QIPNQLQEEEEED-----DDDDDDDEEVDEEE 106
++ N +EEEEE +DDDDDD E +EEE
Sbjct: 82 EVINTEEEEEEEHQQKGGNDDDDDDNEEEEEE 113
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.129 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 255,361,834
Number of Sequences: 2540612
Number of extensions: 10545313
Number of successful extensions: 360997
Number of sequences better than 10.0: 5136
Number of HSP's better than 10.0 without gapping: 4037
Number of HSP's successfully gapped in prelim test: 1294
Number of HSP's that attempted gapping in prelim test: 254080
Number of HSP's gapped (non-prelim): 43947
length of query: 168
length of database: 863,360,394
effective HSP length: 118
effective length of query: 50
effective length of database: 563,568,178
effective search space: 28178408900
effective search space used: 28178408900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 70 (31.6 bits)
Medicago: description of AC149207.4