BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149206.10 - phase: 0
(427 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT38702.1| putative RNase H domain containing protein [Solan... 90 1e-16
gb|AAU89759.1| hypothetical protein [Solanum tuberosum] 87 1e-15
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 73 1e-11
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 73 1e-11
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 73 1e-11
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 73 1e-11
gb|AAP52527.1| putative reverse transcriptase. [Oryza sativa (ja... 70 1e-10
gb|AAX95549.1| hypothetical protein [Oryza sativa (japonica cult... 70 1e-10
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 70 1e-10
ref|XP_475401.1| putative polyprotein [Oryza sativa (japonica cu... 69 2e-10
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 69 2e-10
gb|AAX95313.1| hypothetical protein [Oryza sativa (japonica cult... 69 4e-10
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 69 4e-10
emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana] gi|3... 68 5e-10
gb|AAD32810.1| putative non-LTR retroelement reverse transcripta... 68 5e-10
ref|NP_680424.1| hypothetical protein [Arabidopsis thaliana] 68 5e-10
emb|CAE05716.2| OSJNBb0065J09.12 [Oryza sativa (japonica cultiva... 68 6e-10
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 67 8e-10
ref|NP_197389.1| expressed protein [Arabidopsis thaliana] 67 8e-10
gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor] 67 1e-09
>gb|AAT38702.1| putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 90.1 bits (222), Expect = 1e-16
Identities = 103/396 (26%), Positives = 164/396 (41%), Gaps = 31/396 (7%)
Query: 16 FSQMKVANYLVNGEWILSDFFAYKDNALVEKIHQI-ALPLDET--LDKLIWTDSVDGDLS 72
+++ V +++ EW DF D + ++QI ++P+ + D IW S +G +
Sbjct: 112 YNKDNVKDFIHKREW---DFDKLSDILPPQVVNQIVSIPIGDPNQSDYAIWIPSENGHFT 168
Query: 73 NKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICC 132
K A+ +W+ P +F+TWR + NKLP D + K I S C
Sbjct: 169 TKSAYVDCSNTREKNDMRNKIWHGKFPFKMSFLTWRLVQNKLPFYDTVGKFVDNIDSNCV 228
Query: 133 CFCRKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSSILNISR-----MVQHVMNSAI 187
C + ET +H+FL V LW SS +N+ + + +++ I
Sbjct: 229 CCKNMKTETINHVFLNSDVASYLWKKFGGTLGIDTRASSTINLLKTWWNVQTHNSIHNVI 288
Query: 188 VH-----IMWSIW-LECNNKYFDGVQKPMSTLFNTI---LAEVLRLSFMLDIVKGASSMQ 238
+H I W IW C KY D + T+ N + L LR++F + +S +
Sbjct: 289 IHTLPILIFWEIWKRRCACKYGDQKKMWYRTMENHVWWNLKMSLRMTF--PSFEIGNSWR 346
Query: 239 DFKLARLFSIPFKTNRVNPCREII-WVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQT 297
D L ++ S+ R P +I+ W P+ C+KIN DGS S +G I R
Sbjct: 347 DL-LNKVESL-----RPYPKWKIVHWNTPNINCVKINTDGSF--SSGNAGLGWIVRDHTR 398
Query: 298 MFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWK 357
AF+ ++ AE A F I + N ++E DS V+ K
Sbjct: 399 RMIMAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVVDMVRNGQATNLK 458
Query: 358 MHIRWHNCLLFCRSIRSLCTHVNREGNLVADALAKN 393
+ + + + H RE N VADALAK+
Sbjct: 459 IKGVVEDIIQVVAKMNCEVNHCYREANQVADALAKH 494
>gb|AAU89759.1| hypothetical protein [Solanum tuberosum]
Length = 1095
Score = 87.0 bits (214), Expect = 1e-15
Identities = 97/366 (26%), Positives = 148/366 (39%), Gaps = 25/366 (6%)
Query: 43 LVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTG 102
+V +I I + D IW S +G + K A+ +W+ P
Sbjct: 317 VVNQIVSIPIGDPNQSDYAIWIPSENGHFTTKSAYVDCSNTREKNDMRNKIWHGKFPFKM 376
Query: 103 AFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKA 162
+F+TWR + NKLP D + K I S C C + ET +H+FL V LW
Sbjct: 377 SFLTWRLVQNKLPFYDTVGKFVDNIDSNCVCCKNMKTETINHVFLNSDVASYLWKKFGGT 436
Query: 163 TDQHLDFSSILNISR-----MVQHVMNSAIVH-----IMWSIW-LECNNKYFDGVQKPMS 211
SS +N+ + + +++ I+H I W IW C KY D +
Sbjct: 437 LGIDTRASSTINLLKTWWNVQTHNSIHNVIIHTLPILIFWEIWKRRCACKYGDQKKMWYR 496
Query: 212 TLFNTI---LAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVNPCREII-WVPPH 267
T+ N + L LR++F + +S +D L ++ S+ R P +I+ W P+
Sbjct: 497 TMENHVWWNLKMSLRMTF--PSFEIGNSWRDL-LNKVESL-----RPYPKWKIVHWNTPN 548
Query: 268 GGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKA 327
C+KIN DGS S +G I R AF+ ++ AE A F I
Sbjct: 549 INCVKINTDGSF--SSGNAGLGWIVRDHTRRMIMAFSIPSSCSSNNLAEALAARFGILWC 606
Query: 328 KELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSLCTHVNREGNLVA 387
+ N ++E DS V+ K+ + + + H RE N VA
Sbjct: 607 LQQGFHNCYLELDSKLVVDMVRNGQATNLKIKGVVEDIIQVVAKMNCEVNHCYREANQVA 666
Query: 388 DALAKN 393
DALAK+
Sbjct: 667 DALAKH 672
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 73.2 bits (178), Expect = 1e-11
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 31 ILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPG--HGPTVH 88
+L D F +KD ++ K PL D W S +G S K + FL H
Sbjct: 954 MLRDLFPWKDVEIILKQR----PLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQ 1009
Query: 89 WAKM----------LWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQ 138
AK+ +WN +T P W+ LH +P +D LR RG C C +
Sbjct: 1010 EAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIR-SDDGCLMCDTE 1068
Query: 139 AETSSHIFLQCPVTLQLWDWL-LKATDQHLDFSSILNISRMVQHVMNSAIVH-------- 189
ET +HI +CP+ Q+W L + S N+SR++ + + H
Sbjct: 1069 NETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPW 1128
Query: 190 IMWSIWLECNNKYFDGVQKPMSTL 213
I+W +W N F+G +TL
Sbjct: 1129 ILWFLWKNRNALLFEGKGSITTTL 1152
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 73.2 bits (178), Expect = 1e-11
Identities = 79/352 (22%), Positives = 126/352 (35%), Gaps = 46/352 (13%)
Query: 27 NGEWILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAF--------- 77
+G W + Y N E I I + D + W +G S + A+
Sbjct: 1701 DGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNI 1760
Query: 78 --SFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFC 135
S G +M+W P WR N L T N +KR S C C
Sbjct: 1761 EESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLE-QSDMCQIC 1819
Query: 136 RKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSS-------ILNISRMVQHVMNSAIV 188
++ E +H +C QLW + K+ +D + + + + + +
Sbjct: 1820 DRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFL 1879
Query: 189 HIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFML------DIVKGASSMQDFKL 242
+W W N+ G P + + + L F + D+VKG ++
Sbjct: 1880 MTLWRNWY-VRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVR---- 1934
Query: 243 ARLFSIPFK-------TNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRAS 295
++P K N PC W P G MK+N DGS S G +G+I R S
Sbjct: 1935 ----TVPLKGGPKYRVLNNHQPC----WERPKDGWMKLNVDGSFDASSGKGGLGMILRNS 1986
Query: 296 QTMFCGAFAQNIGYA-TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIR 346
+ + LE+E AC+ ++ A L I +ETD +V++
Sbjct: 1987 AGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQ 2038
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 73.2 bits (178), Expect = 1e-11
Identities = 79/352 (22%), Positives = 126/352 (35%), Gaps = 46/352 (13%)
Query: 27 NGEWILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAF--------- 77
+G W + Y N E I I + D + W +G S + A+
Sbjct: 377 DGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNI 436
Query: 78 --SFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFC 135
S G +M+W P WR N L T N +KR S C C
Sbjct: 437 EESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLE-QSDMCQIC 495
Query: 136 RKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSS-------ILNISRMVQHVMNSAIV 188
++ E +H +C QLW + K+ +D + + + + + +
Sbjct: 496 DRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFL 555
Query: 189 HIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFML------DIVKGASSMQDFKL 242
+W W N+ G P + + + L F + D+VKG ++
Sbjct: 556 MTLWRNWY-VRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVR---- 610
Query: 243 ARLFSIPFK-------TNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRAS 295
++P K N PC W P G MK+N DGS S G +G+I R S
Sbjct: 611 ----TVPLKGGPKYRVLNNHQPC----WERPKDGWMKLNVDGSFDASSGKGGLGMILRNS 662
Query: 296 QTMFCGAFAQNIGYA-TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIR 346
+ + LE+E AC+ ++ A L I +ETD +V++
Sbjct: 663 AGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQ 714
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 73.2 bits (178), Expect = 1e-11
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 31 ILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPG--HGPTVH 88
+L D F +KD ++ K PL D W S +G S K + FL H
Sbjct: 975 MLRDLFPWKDVEIILKQR----PLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQ 1030
Query: 89 WAKM----------LWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQ 138
AK+ +WN +T P W+ LH +P +D LR RG C C +
Sbjct: 1031 EAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIR-SDDGCLMCDTE 1089
Query: 139 AETSSHIFLQCPVTLQLWDWL-LKATDQHLDFSSILNISRMVQHVMNSAIVH-------- 189
ET +HI +CP+ Q+W L + S N+SR++ + + H
Sbjct: 1090 NETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPW 1149
Query: 190 IMWSIWLECNNKYFDGVQKPMSTL 213
I+W +W N F+G +TL
Sbjct: 1150 ILWFLWKNRNALLFEGKGSITTTL 1173
>gb|AAP52527.1| putative reverse transcriptase. [Oryza sativa (japonica
cultivar-group)] gi|37531876|ref|NP_920240.1| putative
reverse transcriptase. [Oryza sativa (japonica
cultivar-group)]
Length = 493
Score = 70.5 bits (171), Expect = 1e-10
Identities = 65/277 (23%), Positives = 105/277 (37%), Gaps = 35/277 (12%)
Query: 91 KMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCP 150
+M+W P WR N L T N +KR S C C ++ E +H +C
Sbjct: 154 EMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLE-QSDMCQICDRENEDDAHALCRCI 212
Query: 151 VTLQLWDWLLKATDQHLDFSS-------ILNISRMVQHVMNSAIVHIMWSIWLECNNKYF 203
QLW + K+ +D + + + + + + +W W N+
Sbjct: 213 QASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWY-VRNELI 271
Query: 204 DGVQKPMSTLFNTILAEVLRLSFML------DIVKGASSMQDFKLARLFSIPFK------ 251
G P + + + L F + D+VKG ++ ++P K
Sbjct: 272 HGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVR--------TVPLKGGPKYR 323
Query: 252 -TNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYA 310
N PC W P G MK+N DGS S G +G+I R S + +
Sbjct: 324 VLNNHQPC----WERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERC 379
Query: 311 -TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIR 346
LE+E AC+ ++ A L I +ETD +V++
Sbjct: 380 NNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQ 416
>gb|AAX95549.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 472
Score = 70.5 bits (171), Expect = 1e-10
Identities = 65/277 (23%), Positives = 105/277 (37%), Gaps = 35/277 (12%)
Query: 91 KMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCP 150
+M+W P WR N L T N +KR S C C ++ E +H +C
Sbjct: 133 EMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLE-QSDMCQICDRENEDDAHALCRCI 191
Query: 151 VTLQLWDWLLKATDQHLDFSS-------ILNISRMVQHVMNSAIVHIMWSIWLECNNKYF 203
QLW + K+ +D + + + + + + +W W N+
Sbjct: 192 QASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWY-VRNELI 250
Query: 204 DGVQKPMSTLFNTILAEVLRLSFML------DIVKGASSMQDFKLARLFSIPFK------ 251
G P + + + L F + D+VKG ++ ++P K
Sbjct: 251 HGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVR--------TVPLKGGPKYR 302
Query: 252 -TNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYA 310
N PC W P G MK+N DGS S G +G+I R S + +
Sbjct: 303 VLNNHQPC----WERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERC 358
Query: 311 -TALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIR 346
LE+E AC+ ++ A L I +ETD +V++
Sbjct: 359 NNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQ 395
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 816
Score = 70.1 bits (170), Expect = 1e-10
Identities = 98/381 (25%), Positives = 148/381 (38%), Gaps = 45/381 (11%)
Query: 44 VEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSF---------------LPGHGPTVH 88
V++I +I LP T D L W G + + A+ G+G V
Sbjct: 255 VDEILKIKLPESPTDDFLAWHPERLGVFTVRSAYKLGLAEEHRANEAGACSSNGNGDRVL 314
Query: 89 WAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQ 148
W K +W+A P WR +LPT N +KR + S C C E H +
Sbjct: 315 W-KNIWSAQVPQKVCIFAWRLAVERLPTQHNKQKRNI-VPSARCEVCGAPREDGFHATVV 372
Query: 149 CPVTLQLWD-----WLLKATDQHLDFSS--ILNISRMVQHVMNSAIVHIMWSIWLECNNK 201
C L D W + D+ + +L + + + ++ ++W W NN
Sbjct: 373 CTKAKALRDELRAFWPIPPEDKFVRQGPDWLLLLLDTLDMRNKAQMLLMLWRAWHLRNNS 432
Query: 202 YFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVNP---- 257
D TL TI + L + ++ +D K +P + N+ NP
Sbjct: 433 VHD-----TGTL--TISGSIRFLQSYVQLLFPIRQKEDPKGKCAAQVPGRLNQ-NPGVTK 484
Query: 258 --CREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQ-TMFCGAFAQNIGYATALE 314
C +I W PP G KIN DG+ + + G IGVI R S+ ++ A A +
Sbjct: 485 ADCLQI-WEPPPEGWAKINVDGAFSMTDNTGGIGVIARDSEGKALLSSWKYLHRCADAEQ 543
Query: 315 AEYSACMFAIEKAKELHLTNIWIETDSVNVI--RAFHFNTGVPWKMHIRWHNCLLFCRSI 372
E AC ++ A E I +E+D V VI W IR ++ RS+
Sbjct: 544 VEILACYEGMKLAAEWIRKPIILESDCVTVIGRMTAEDEERSRWTFLIRSAKAVM--RSL 601
Query: 373 RSL-CTHVNREGNLVADALAK 392
+ + H RE N VA LA+
Sbjct: 602 QEVRIQHRKRECNRVAHELAQ 622
>ref|XP_475401.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|49328070|gb|AAT58770.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 69.3 bits (168), Expect = 2e-10
Identities = 44/185 (23%), Positives = 79/185 (41%), Gaps = 32/185 (17%)
Query: 59 DKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDD 118
D ++W S G + K A+ +++W + P F W N++ T D
Sbjct: 253 DTILWRWSASGLYTAKSAYVMQFMGKTFSDSTELVWETWAPGKHKFFAWLLAQNRIWTAD 312
Query: 119 NLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLW---------------------- 156
+L+ RG + + C C + ET H+F++CP T Q+W
Sbjct: 313 HLQCRG-WPNNYFCQLCFRNLETVQHLFMECPFTQQVWRDIGRKFRPQRFLHVTTDNTLL 371
Query: 157 DWLLKATDQHLDFSSILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQKPMSTLFNT 216
+W + TD+ ++ Q + SA++ +W IW+E N++ F G + S L +
Sbjct: 372 NWWREQTDE---------AEKLQQKGLRSAVLTTLWEIWMERNDRIFRGKESTPSALASK 422
Query: 217 ILAEV 221
I+ E+
Sbjct: 423 IIDEL 427
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 69.3 bits (168), Expect = 2e-10
Identities = 68/271 (25%), Positives = 108/271 (39%), Gaps = 25/271 (9%)
Query: 92 MLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPV 151
++W P WR N L T +N KR IC C + E + H+ +CP
Sbjct: 554 LIWQTNAPQKVRIFAWRAATNCLATMENKAKRKLEQSDICLV-CGLEKEDTKHVLCRCPD 612
Query: 152 TLQLWDWLLKATDQHLDFSSILN----ISRMVQHVMN---SAIVHIMWSIWLECNNKYFD 204
LW + +A + L+ ++ N I ++ +++ + + I+W IW N+
Sbjct: 613 ARNLWGAMCEAGNISLNGGNLCNDPGWIFDQLEILLDYERTVFLLILWRIWF-VRNEIVH 671
Query: 205 GVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVNPCREII-- 262
G Q P L S++ +++ Q I F + NP R
Sbjct: 672 GKQPPPIEASKRFLE-----SYVKSLLEIRQHPQANVEKGKHVISFVNGKTNPARRPPED 726
Query: 263 ----WVPPHGGCMKINCDGSVVGSPSCGSIGVIFR--ASQTMF-CGAFAQNIGYATALEA 315
W P G MK+N DGS G IGV+ R + + +F C G +ALE+
Sbjct: 727 KNQKWRKPCEGWMKVNVDGSFDAQTGSGGIGVVMRDWSGKVIFACCKHLPRCG--SALES 784
Query: 316 EYSACMFAIEKAKELHLTNIWIETDSVNVIR 346
E AC I + L +ETD + V++
Sbjct: 785 EILACKEGILVGLQWSLRQFVVETDCLMVVQ 815
>gb|AAX95313.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1063
Score = 68.6 bits (166), Expect = 4e-10
Identities = 77/292 (26%), Positives = 115/292 (39%), Gaps = 43/292 (14%)
Query: 107 WRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKATDQH 166
W+ N LPT +N +KR +C C + E + H +CP QLW +L +
Sbjct: 740 WKAASNYLPTMENKKKRNLEASEVCK-ICGIEKEDTIHALYRCPQARQLW--ILMRDVIY 796
Query: 167 LDFS---------SILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQKPMSTLFNTI 217
LD + +L++ ++ + +W +W N+ G + P +T+
Sbjct: 797 LDPAVVGRCTGPNRVLDLLMLLPEDNRMFFLMTLWRVWF-IRNEIIHGKEPPPATVSKRF 855
Query: 218 LAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVNPCR---EIIWVPPHGGCMKIN 274
L +R L S ++ +A S P V P W+ P G MK+N
Sbjct: 856 LLSYVRSLLDLSQHPDGSLLKGKHVAS--SSPQTNGMVKPVNVQASAPWIKPQPGWMKLN 913
Query: 275 CDGSVVGSPSCGSIGVIFRAS--QTMF--CGAFAQNIGYATALEAEYSACMFAIEKAKEL 330
DGS S + G IGVI R S +F CG + ALEAE A +I A
Sbjct: 914 IDGSFDASLNQGGIGVIPRNSTGSVIFSACGFIDR---CNCALEAELLALKESIILALHW 970
Query: 331 HLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRSIRSLCTHVNRE 382
L I IETD + + N + RS+RS H+ R+
Sbjct: 971 TLLPICIETDCLEAV------------------NLIQSARSVRSELAHLIRD 1004
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 68.6 bits (166), Expect = 4e-10
Identities = 82/309 (26%), Positives = 118/309 (37%), Gaps = 36/309 (11%)
Query: 121 RKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKA-------TDQHLD--FSS 171
R+R S C C+ +T HI CP +W L+ A T L+ F++
Sbjct: 11 RRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLLEWLFAN 70
Query: 172 ILNISRMVQHVMNSAIVHIMWSIWL-ECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDI 230
+ + + + ++ +W W C N + GVQ + S I
Sbjct: 71 LGDRRKTCESTWSTLFALSIWWAWKWRCGNIF--GVQDKCRDRVRFLKDLARETSMAHVI 128
Query: 231 VKGASSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGV 290
V+ S ++ RL I W P G K+N DG+ G+P S G
Sbjct: 129 VRTLSGGHGERVERL---------------IAWSKPEEGWWKLNTDGASRGNPGLASAGG 173
Query: 291 IFRASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHF 350
+ R + + G FA NIG +A AE + + A E +T + IE DS V+
Sbjct: 174 VLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKI 233
Query: 351 NTGVPWKMHIRWHNCLLF-CRSIRSLCTHVNREGNLVADALAKNGQGLALYS-SHPLAFI 408
+ C F R R +HV RE N +AD GLA Y+ S PL F
Sbjct: 234 GINEVHPLSFLVRLCHDFISRDWRVRISHVYREANRLAD-------GLANYAFSLPLGFH 286
Query: 409 SSFYVRDCL 417
S V D L
Sbjct: 287 SLSLVPDSL 295
>emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana]
gi|3402761|emb|CAA20207.1| hypothetical protein
[Arabidopsis thaliana] gi|3080386|emb|CAA18706.1|
hypothetical protein [Arabidopsis thaliana]
gi|7485719|pir||T05150 hypothetical protein F18E5.40 -
Arabidopsis thaliana
Length = 229
Score = 68.2 bits (165), Expect = 5e-10
Identities = 49/146 (33%), Positives = 75/146 (50%), Gaps = 21/146 (14%)
Query: 260 EIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYSA 319
+++W P G +K+N DGS G SIG +FR + F ++++IG AT+ AE++A
Sbjct: 60 KVVWKKPENGRIKLNFDGSR-GREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAA 118
Query: 320 CMFAIEKAKELHLTNIWIETDSVNV---------IRAFHFNTGVPWKMHI--RWHNCLLF 368
+E A E LT++W+E D+ + +R N V + + +NC+L
Sbjct: 119 LKRGLELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELNNCVL- 177
Query: 369 CRSIRSLCTHVNREGNLVADALAKNG 394
+HV REGN VAD LAK G
Sbjct: 178 --------SHVYREGNRVADKLAKLG 195
>gb|AAD32810.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|15226733|ref|NP_181600.1| hypothetical
protein [Arabidopsis thaliana] gi|25370674|pir||E84832
hypothetical protein At2g40680 [imported] - Arabidopsis
thaliana
Length = 296
Score = 68.2 bits (165), Expect = 5e-10
Identities = 42/160 (26%), Positives = 72/160 (44%), Gaps = 11/160 (6%)
Query: 63 WTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRK 122
W + S+ + L P WAK +W + P FITW +H++L T +R
Sbjct: 102 WKTGFKHNFSSNETWKMLRVEKPICRWAKEIWFSEATPKFFFITWLAIHDRLTTGARMRS 161
Query: 123 RGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLK---------ATDQHLDFSSIL 173
V C FC + ET +H+F QCP + Q+W+ L+K + D+ + +
Sbjct: 162 WNTQ-VDTTCKFCAEPVETRNHLFFQCPYSTQVWEKLMKGLLQGHYTSSWDRIVTLLTSS 220
Query: 174 NISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQKPMSTL 213
++ R ++ + +IW E NN+ G + P++ L
Sbjct: 221 SLGRKHLLLLRYTFQIKVHTIWRERNNRR-HGEENPITPL 259
>ref|NP_680424.1| hypothetical protein [Arabidopsis thaliana]
Length = 406
Score = 68.2 bits (165), Expect = 5e-10
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 63 WTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRK 122
W + S+ + L P WAK +W + P +FITW +H++L T +R
Sbjct: 270 WKTGFKHNFSSNETWKMLRVEKPICRWAKGIWFSEATPKFSFITWLAIHDRLTTGARMRS 329
Query: 123 RGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLK 161
V C FC + ET +H+F QCP + Q+W+ L+K
Sbjct: 330 WNTQ-VDTTCKFCAEPVETRNHLFFQCPYSTQVWEKLMK 367
>emb|CAE05716.2| OSJNBb0065J09.12 [Oryza sativa (japonica cultivar-group)]
Length = 436
Score = 67.8 bits (164), Expect = 6e-10
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 21/212 (9%)
Query: 43 LVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTG 102
L E + + L +E D+++W + +G + A+ P+ + ++W A+ P
Sbjct: 227 LWEAVRNVQLVSEEP-DQIVWKFTGNGHYTASSAYHAQCLEAPSTNLNSLIWKAWAPGKC 285
Query: 103 AFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKA 162
F W + N++ T D L RG + + C CR +AET H+ C T ++W +
Sbjct: 286 KFYVWLIIQNRVWTSDRLAIRG-WQNNGHCPLCRCEAETGLHLVATCRYTKRIWHHVAGW 344
Query: 163 TDQH-LD-------------FSSILNISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQK 208
H L+ + S+ N + + + S I+ ++W IW E N + FD +
Sbjct: 345 VGYHQLEPSQWEEAQSVCQWWESLANTPNIPKKGLRSLILLVVWEIWKERNRRIFDNKEM 404
Query: 209 PMSTLFNTILAEVLRLSFMLDIVKGASSMQDF 240
+ L I E + + GA ++DF
Sbjct: 405 AVGLLLAKIKEEA-----SVWALAGAKRLRDF 431
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 67.4 bits (163), Expect = 8e-10
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 59 DKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDD 118
DKL WT S DG + + + L T K +W P W F NK+ T D
Sbjct: 811 DKLWWTLSKDGKFTVRSFYRALKLQ-QTSFPNKKIWKFRVPLKIRIFIWFFTKNKILTKD 869
Query: 119 NLRKRGCYIVSICCCFCRKQAETSSHIFLQCPVTLQLWDWLLKATD-------QHLDFSS 171
NL KRG C FC K ET H+F CP+ +W+ + A + Q L S
Sbjct: 870 NLLKRGWRKGDNKCQFCDK-VETVQHLFFDCPLARLIWNIIACALNVKPVLSRQDLFGSW 928
Query: 172 ILNISRMVQHVMNSAIVHIMWSIWLECNNK 201
I ++ + ++++ I ++WSIW +C NK
Sbjct: 929 IQSMDKFTKNLVIVGIAAVLWSIW-KCRNK 957
>ref|NP_197389.1| expressed protein [Arabidopsis thaliana]
Length = 295
Score = 67.4 bits (163), Expect = 8e-10
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 21/203 (10%)
Query: 27 NGEWILSDFFAYKDNALVEKIHQIALPLDET-LDKLIWTDSVDGDL---SNKLAFSFLPG 82
NG+W L + + + +P + D +W ++ L S++ + +
Sbjct: 61 NGDWFLPAARSDNSQLFLAALTMAPVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRV 120
Query: 83 HGPTVHWAKMLWNAYTPPTGAFITWRFLHNKLPTDDNLRKRGCYIVSICCCFCRKQAETS 142
H PTV WAK++W P + ITW +LPT D LR G I S C ET
Sbjct: 121 HSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPS-SWVLCSNGDETH 179
Query: 143 SHIFLQCPVTLQLWDW------------LLKATDQHLDFSSILNISRMVQHVMNSAIVHI 190
+H+F +C +L +W++ L A+ L + + +++ ++ SA+ H
Sbjct: 180 AHLFFECSFSLAIWEFFASKFRPSPPFGLPAASSWILQLPLRSHSTTILKLLLQSAVYH- 238
Query: 191 MWSIWLECNNKYFDGVQKPMSTL 213
+W E N + F + S+L
Sbjct: 239 ---VWKERNARIFTSISSSASSL 258
>gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1998
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 12/191 (6%)
Query: 54 LDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWAKMLWNAYTPPTGAFITWRFLHNK 113
L+ T ++ W + S A+S L GH K +W ++ P W + ++
Sbjct: 1805 LERTQEQDQWKYKWGNNFSATKAYSELMGHQQIHEVHKWIWKSFCQPKHKVFFWLLIKDR 1864
Query: 114 LPTDDNLRKRGCYIVSICCCFC-RKQAETSSHIFLQCPVTLQLWDWLLKATDQHLDFSSI 172
L T + L+++ + S C C + ET+SH+FL C Q W L + DF I
Sbjct: 1865 LSTCNILKRKNMQLQSYNCVLCLQNSEETTSHLFLHCAYARQCWQLLDMDIPPNSDFPEI 1924
Query: 173 LNISRMVQHVMNS-----AIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEVLRLSFM 227
+ +H N+ + + W+IW NN F G+Q + E+L L
Sbjct: 1925 TD---HFKHGFNNQFFMVTTILLCWAIWSTRNNLIFRGIQPTIEGTKEIFKRELLLLEHR 1981
Query: 228 LDIVKGASSMQ 238
VK ++S Q
Sbjct: 1982 ---VKASNSSQ 1989
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.139 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 759,888,086
Number of Sequences: 2540612
Number of extensions: 31655512
Number of successful extensions: 79009
Number of sequences better than 10.0: 292
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 78570
Number of HSP's gapped (non-prelim): 348
length of query: 427
length of database: 863,360,394
effective HSP length: 131
effective length of query: 296
effective length of database: 530,540,222
effective search space: 157039905712
effective search space used: 157039905712
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 76 (33.9 bits)
Medicago: description of AC149206.10