BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149205.17 + phase: 0 /pseudo
(626 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174491.1| expressed protein [Arabidopsis thaliana] gi|255... 51 1e-04
emb|CAB10384.1| hypothetical protein [Arabidopsis thaliana] gi|7... 48 8e-04
gb|AAM91246.1| unknown protein [Arabidopsis thaliana] gi|1969901... 48 8e-04
ref|NP_175497.1| hypothetical protein [Arabidopsis thaliana] gi|... 46 0.004
gb|AAU44405.1| hypothetical protein AT1G50830 [Arabidopsis thali... 46 0.004
ref|NP_197352.1| hypothetical protein [Arabidopsis thaliana] 42 0.060
ref|NP_175565.1| kelch repeat-containing protein [Arabidopsis th... 42 0.078
ref|NP_175490.1| expressed protein [Arabidopsis thaliana] gi|123... 39 0.39
gb|AAG50778.1| hypothetical protein, 5' partial [Arabidopsis tha... 39 0.66
ref|NP_175494.1| hypothetical protein [Arabidopsis thaliana] gi|... 38 1.1
ref|XP_613633.1| PREDICTED: similar to Snf2-related CBP activato... 36 3.3
emb|CAG58591.1| unnamed protein product [Candida glabrata CBS138... 36 4.3
gi|33620425 TPA: X-ray radiation resistance associated 1 protein... 35 9.5
ref|NP_917326.1| putative myosin heavy chain-like protein [Oryza... 35 9.5
gb|AAV47520.1| unknown [Haloarcula marismortui ATCC 43049] gi|55... 35 9.5
>ref|NP_174491.1| expressed protein [Arabidopsis thaliana] gi|25518597|pir||E86445
hypothetical protein F3C3.9 [imported] - Arabidopsis
thaliana gi|10801373|gb|AAG23445.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1206
Score = 51.2 bits (121), Expect = 1e-04
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 421 IAWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKSV 458
+AWK+Y RP++D LYFP++ EA +T Y +WW SV
Sbjct: 427 LAWKDYIRPIADGMLYFPARLHEADVTVGYIRWWKLSV 464
>emb|CAB10384.1| hypothetical protein [Arabidopsis thaliana]
gi|7268354|emb|CAB78647.1| hypothetical protein
[Arabidopsis thaliana] gi|7485155|pir||F71426
hypothetical protein d14065w - Arabidopsis thaliana
Length = 900
Score = 48.1 bits (113), Expect = 8e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 422 AWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKSV 458
AW +Y++PL LYFPS+ A +T RY WW KSV
Sbjct: 644 AWDDYNKPLVGLKLYFPSRVATASVTTRYRDWWAKSV 680
>gb|AAM91246.1| unknown protein [Arabidopsis thaliana] gi|19699015|gb|AAL91243.1|
unknown protein [Arabidopsis thaliana]
gi|22328697|ref|NP_193340.2| expressed protein
[Arabidopsis thaliana]
Length = 666
Score = 48.1 bits (113), Expect = 8e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 422 AWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKSV 458
AW +Y++PL LYFPS+ A +T RY WW KSV
Sbjct: 410 AWDDYNKPLVGLKLYFPSRVATASVTTRYRDWWAKSV 446
>ref|NP_175497.1| hypothetical protein [Arabidopsis thaliana]
gi|12321797|gb|AAG50939.1| hypothetical protein
[Arabidopsis thaliana] gi|25405410|pir||C96545
hypothetical protein F8A12.7 [imported] - Arabidopsis
thaliana
Length = 768
Score = 45.8 bits (107), Expect = 0.004
Identities = 19/55 (34%), Positives = 31/55 (55%)
Query: 404 NSDLIKMFLVNQTDPKAIAWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKSV 458
+ DL + + + AW +Y++ L +LY PS+ + +TARY WW+KSV
Sbjct: 400 DQDLPGLATCQRNSTEKEAWNDYNKSLIGLNLYMPSRLDQGSVTARYRVWWLKSV 454
>gb|AAU44405.1| hypothetical protein AT1G50830 [Arabidopsis thaliana]
Length = 768
Score = 45.8 bits (107), Expect = 0.004
Identities = 19/55 (34%), Positives = 31/55 (55%)
Query: 404 NSDLIKMFLVNQTDPKAIAWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKSV 458
+ DL + + + AW +Y++ L +LY PS+ + +TARY WW+KSV
Sbjct: 400 DQDLPGLATCQRNSTEKEAWNDYNKSLIGLNLYMPSRLDQGSVTARYRVWWLKSV 454
>ref|NP_197352.1| hypothetical protein [Arabidopsis thaliana]
Length = 702
Score = 42.0 bits (97), Expect = 0.060
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 422 AWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKS 457
AW +YS L +LY PS+ +TARY WW KS
Sbjct: 394 AWDDYSNSLEGLNLYLPSQLDRGYVTARYQDWWFKS 429
>ref|NP_175565.1| kelch repeat-containing protein [Arabidopsis thaliana]
gi|12325370|gb|AAG52629.1| unknown protein; 27363-23366
[Arabidopsis thaliana] gi|25405477|pir||H96553 unknown
protein, 27363-23366 [imported] - Arabidopsis thaliana
Length = 1036
Score = 41.6 bits (96), Expect = 0.078
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 422 AWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKSV 458
AW Y++ L LY PS+ +T RY WW+KS+
Sbjct: 326 AWDGYNKSLDGLMLYIPSRVATTSVTERYRDWWLKSI 362
>ref|NP_175490.1| expressed protein [Arabidopsis thaliana] gi|12321433|gb|AAG50779.1|
unknown protein [Arabidopsis thaliana]
gi|25405398|pir||D96544 unknown protein [imported] -
Arabidopsis thaliana
Length = 816
Score = 39.3 bits (90), Expect = 0.39
Identities = 15/46 (32%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Query: 413 VNQTD-PKAIAWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKS 457
VNQ + + AW +Y++P++D +L+ PS+ +T + +WW +S
Sbjct: 321 VNQNNLSQEAAWNDYNKPINDLALFIPSRSAIPRVTPTFCEWWRRS 366
>gb|AAG50778.1| hypothetical protein, 5' partial [Arabidopsis thaliana]
Length = 649
Score = 38.5 bits (88), Expect = 0.66
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 422 AWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKS 457
AW +Y++P+ D +L+ PS+ +T+ + +WW K+
Sbjct: 393 AWNDYNKPIDDLALHIPSRSAIPRVTSTFCEWWRKT 428
>ref|NP_175494.1| hypothetical protein [Arabidopsis thaliana]
gi|12321786|gb|AAG50928.1| hypothetical protein
[Arabidopsis thaliana] gi|25405404|pir||H96544
hypothetical protein F8A12.4 [imported] - Arabidopsis
thaliana
Length = 812
Score = 37.7 bits (86), Expect = 1.1
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 422 AWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKSVLRSQ-------GFVTNFEPRKRS 474
AW +Y +PL D LY PS+ + T + W K V+ S G T+F P S
Sbjct: 405 AWNDYYKPLDDLELYIPSRSAISCDTPMFCDSWRKRVVGSAKTLRTSIGDDTSFVP-SGS 463
Query: 475 ASSSKCEPSAKIPPEFPSHKLVGCTVTIGKSSDDGSNTSQGDKIVDDDAPSGSIPKLLKT 534
+ + E KI + +L +DGS Q I DD S+ T
Sbjct: 464 KMNRRSEDGRKIAEDSTKKRL---KFMKSARKNDGSTMGQKQVISDDADDDDSLTVAQIT 520
Query: 535 MSFEKSVED 543
++K +
Sbjct: 521 TLYKKKYSE 529
>ref|XP_613633.1| PREDICTED: similar to Snf2-related CBP activator protein, partial
[Bos taurus]
Length = 1918
Score = 36.2 bits (82), Expect = 3.3
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 420 AIAWKNYSRPLSDRSLYFPSKFFEAGITARYAKWWMKSVLRSQGFVTNFEPRKRSASSSK 479
+I NY S + S + + G T R++ + V S N+EP K SS
Sbjct: 1463 SIISSNYGTSPSSITSSESSFYADTGFTPRFSIHSWRLVSISDTLFGNWEPSKSLFSSDV 1522
Query: 480 CEPSAKIPPEFPSHKLV-GCTVTIGKSSDD--GSNTSQGDKIVDDDAPS 525
S+ IP S V G TIG SD GS+T G D +PS
Sbjct: 1523 VIDSSIIPSTSSSPNTVFGTRTTIGSISDAVFGSSTHSGSSFSDGPSPS 1571
>emb|CAG58591.1| unnamed protein product [Candida glabrata CBS138]
gi|50286503|ref|XP_445680.1| unnamed protein product
[Candida glabrata]
Length = 990
Score = 35.8 bits (81), Expect = 4.3
Identities = 31/135 (22%), Positives = 59/135 (42%), Gaps = 25/135 (18%)
Query: 503 GKSSDDGSNTSQGDKIVDDDAPSGSIPKLLKTMSFEKSVEDGLLAEKYVDGGAPLPAKDN 562
G+S++ + DK V ++ PS ++ S K E+ + + D + KDN
Sbjct: 280 GESTEASEASDSTDKAVGNNEPSTD-----ESDSNNKDAENSEDQDTFFDSKDTITEKDN 334
Query: 563 ---------TPTPLIFVDDCK--------HVLEDGNESEEARLSTDTICQSENQTESYSY 605
+P PL F + K H ED N+ E +++ DT +EN ++ +
Sbjct: 335 ELESGSKDSSPRPLTFAEKLKLKKKQTEEHKEEDSNKEEHEQVNIDT---TENSGDNNQH 391
Query: 606 LSELIVEELNRELAD 620
++E+ +E + +D
Sbjct: 392 VNEVELESKEKNESD 406
>gi|33620425 TPA: X-ray radiation resistance associated 1 protein; Xrra1 [Bos
taurus] gi|42627887|ref|NP_976069.1| X-ray radiation
resistance associated 1 protein [Bos taurus]
Length = 508
Score = 34.7 bits (78), Expect = 9.5
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 513 SQGDKIVDDDAPSGSIPKLLKTMSFEKSVE-DGLLAEKYVDGGAPLPAKDNTPTPLIFVD 571
S ++++ +A + P KT+S E+ + +GL GG P+P + P P I D
Sbjct: 207 SPSKEMLESEAELTTEPPPTKTISVEREMPIEGL-------GGPPMPHRTFVPLPPICSD 259
Query: 572 DCKHVLEDGNESEEA-RLSTDTICQSENQTESYSYLSEL 609
H E S+ A RLS D + + ++ +L+++
Sbjct: 260 STVHSEETSPRSDAAGRLSADQLSDEDTKSTESIFLTQV 298
>ref|NP_917326.1| putative myosin heavy chain-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 1762
Score = 34.7 bits (78), Expect = 9.5
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 21/136 (15%)
Query: 502 IGKSSDDGSNTSQGDKIVDDDAPSGSIPKLLKT-----MSFE-----KSVEDGLLAEKYV 551
IGK + G ++S D DD S LKT +S E K VED E+ +
Sbjct: 383 IGKLENVGHSSSDSDSSDSDDEGDSSDNNNLKTKVEDALSEENGWKQKLVEDREAKEESL 442
Query: 552 DGGAPLPAKDNTPTPLIFVDDCKHVLEDGNESEEA---RLSTDTI-CQSENQTESYSYLS 607
+ K NT + D KH+L+ + +EA LS+D SEN+
Sbjct: 443 EAEIE-KLKQNTEEQAKEISDLKHLLDKAIKDKEATRVELSSDVANLSSENEN------L 495
Query: 608 ELIVEELNRELADSRK 623
+L+VE RE +S K
Sbjct: 496 KLLVETTEREAGESHK 511
>gb|AAV47520.1| unknown [Haloarcula marismortui ATCC 43049]
gi|55379376|ref|YP_137226.1| hypothetical protein
rrnAC2757 [Haloarcula marismortui ATCC 43049]
Length = 729
Score = 34.7 bits (78), Expect = 9.5
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 508 DGSNTSQGDKIVDDDAPSGSIPKLLKTMSFEKSVEDGLLAEKYVDGGAPLPAKDNTPTPL 567
D S+T ++ D+ PS P L T + + + AE VDG PL P L
Sbjct: 14 DDSSTDGDERTAKDNGPSDDGPDRLDTAALDPTTFREY-AENVVDGADPLTFD---PDAL 69
Query: 568 IFVDDCKHVLEDGNESEEARLSTDTICQSENQTESYSYLSELIVEELNRELADS 621
+D +E+ E + T +EN SYL EL+V + E S
Sbjct: 70 ARLDTA---IEESYGGETVGDAAGTTTYTENTVRFGSYLGELLVRAYDGEWVQS 120
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.350 0.153 0.557
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 952,823,083
Number of Sequences: 2540612
Number of extensions: 36524516
Number of successful extensions: 151129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 151113
Number of HSP's gapped (non-prelim): 21
length of query: 626
length of database: 863,360,394
effective HSP length: 134
effective length of query: 492
effective length of database: 522,918,386
effective search space: 257275845912
effective search space used: 257275845912
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 78 (34.7 bits)
Medicago: description of AC149205.17