BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149205.14 - phase: 0 /pseudo
(890 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 107 1e-21
gb|AAB48346.1| reverse transcriptase 105 7e-21
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 105 9e-21
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 105 9e-21
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 104 1e-20
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 104 1e-20
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 104 1e-20
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 103 2e-20
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 102 4e-20
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 102 4e-20
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 102 4e-20
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 102 6e-20
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 102 6e-20
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 102 6e-20
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 100 2e-19
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 100 2e-19
emb|CAD22569.1| reverse transcriptase [Brassica napus] 100 3e-19
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 100 4e-19
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 100 4e-19
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 99 8e-19
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 107 bits (268), Expect = 1e-21
Identities = 45/106 (42%), Positives = 74/106 (69%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P ++I +N +VA E++H +K++ Q YVA+K DISKAYDR++W++L+++MI++GF+ +
Sbjct: 904 PGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPR 963
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W++W++ SV Y VL+N G + RG+RQG PLS + C
Sbjct: 964 WVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFC 1009
>gb|AAB48346.1| reverse transcriptase
Length = 199
Score = 105 bits (262), Expect = 7e-21
Identities = 44/98 (44%), Positives = 71/98 (71%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R+I +N +VA E++H +K++ Q YVA+K DISKAYDR++W++L+++MI++GF+ +
Sbjct: 98 PGRNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPR 157
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPL 132
W++W++ SV Y VL+N G + RG+RQG PL
Sbjct: 158 WVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGYPL 195
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 105 bits (261), Expect = 9e-21
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N +VA E++H +K R +++A+K D+SKAYDR++W YL+ +++ +GF KW
Sbjct: 509 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 568
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
+ W++V SV Y+VL+N G +IL RGLRQG PLS + LC L
Sbjct: 569 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGL 617
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 105 bits (261), Expect = 9e-21
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N +VA E++H +K R +++A+K D+SKAYDR++W YL+ +++ +GF KW
Sbjct: 506 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 565
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
+ W++V SV Y+VL+N G +IL RGLRQG PLS + LC L
Sbjct: 566 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGL 614
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 104 bits (260), Expect = 1e-20
Identities = 48/110 (43%), Positives = 74/110 (66%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N +VA E+IH ++T R +++A K D+SKAYDR++W +L+ +M +GF+ K
Sbjct: 520 PQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNK 579
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
WI W++ SV Y+VL+N + G +I RG+RQG PLS + + LC +L
Sbjct: 580 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEAL 629
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 104 bits (260), Expect = 1e-20
Identities = 48/110 (43%), Positives = 74/110 (66%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N +VA E+IH ++T R +++A K D+SKAYDR++W +L+ +M +GF+ K
Sbjct: 541 PQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNK 600
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
WI W++ SV Y+VL+N + G +I RG+RQG PLS + + LC +L
Sbjct: 601 WISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEAL 650
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 104 bits (259), Expect = 1e-20
Identities = 43/109 (39%), Positives = 74/109 (67%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N ++A E++H ++T + +++ K D+SKAYDR++W +L+EI++ +GF+ KW
Sbjct: 495 ERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKW 554
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
I W++ SV Y+VL+N +H G + RG+RQG P+S + LC +L
Sbjct: 555 ISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEAL 603
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411644|pir||C84530 hypothetical protein
At2g15540 [imported] - Arabidopsis thaliana
Length = 1225
Score = 103 bits (258), Expect = 2e-20
Identities = 45/109 (41%), Positives = 72/109 (65%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R I +N ++A E H ++T + KY+A+K D+SKAYDR++W +L+ +M+KMGF+QKW
Sbjct: 490 ERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKW 549
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
+ W++ SV Y +L+N G + RG+RQG P+S + LC +L
Sbjct: 550 VDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEAL 598
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 102 bits (255), Expect = 4e-20
Identities = 48/106 (45%), Positives = 69/106 (64%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A EV+H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 924 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 983
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC
Sbjct: 984 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILC 1029
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 102 bits (255), Expect = 4e-20
Identities = 48/106 (45%), Positives = 69/106 (64%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A EV+H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 698 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 757
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC
Sbjct: 758 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILC 803
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 102 bits (255), Expect = 4e-20
Identities = 51/123 (41%), Positives = 75/123 (60%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N M+A E++H +K + R Y+A+K D+SKAYDR++WD+L+ M GF K
Sbjct: 163 PGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDK 222
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRAS 154
WI W++ + +SV Y+VL+N G + RG+RQG PLS + LC L + +S
Sbjct: 223 WIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASS 282
Query: 155 GHI 157
G I
Sbjct: 283 GDI 285
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 102 bits (254), Expect = 6e-20
Identities = 50/119 (42%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I +N ++ EV+HF++T + + +A+K D+SKAYDR++WD+LK+++ + GF
Sbjct: 437 PGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSI 496
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRA 153
WI W++ SV Y+ L+N G V+ RGLRQG PLS + LC L CTRA
Sbjct: 497 WIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGL--CTRA 553
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 102 bits (254), Expect = 6e-20
Identities = 47/106 (44%), Positives = 73/106 (68%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R + +N M+A E++H +KT+ R Y+A+K D+SKAYDR++W++L+ M GFS+
Sbjct: 904 PGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSET 963
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI+W++ + +SV+Y+VLVN G + RG+RQG PLS + LC
Sbjct: 964 WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILC 1009
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 102 bits (254), Expect = 6e-20
Identities = 47/106 (44%), Positives = 73/106 (68%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R + +N M+A E++H +KT+ R Y+A+K D+SKAYDR++W++L+ M GFS+
Sbjct: 924 PGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSET 983
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
WI+W++ + +SV+Y+VLVN G + RG+RQG PLS + LC
Sbjct: 984 WIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILC 1029
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 100 bits (250), Expect = 2e-19
Identities = 44/104 (42%), Positives = 73/104 (69%)
Query: 37 RSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWI 96
R I +N ++A E+ H ++T + +DK++A+K D+SKAYD+++W++++ ++ KMGF +KWI
Sbjct: 328 RLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWI 387
Query: 97 QWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W++ +V Y VL+N + G +I RGLRQG PLS + LC
Sbjct: 388 SWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILC 431
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 100 bits (250), Expect = 2e-19
Identities = 45/123 (36%), Positives = 76/123 (61%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQK 94
P R I N ++A E+ H++ + +G++ A+KLD+SKAYDR++WD+L+ +M+++GF +
Sbjct: 890 PRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQ 949
Query: 95 WIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSLFSY*RCTRAS 154
W+ ++ SV Y + +N EH + RGLRQG PLS + +C L + + +A
Sbjct: 950 WVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQAD 1009
Query: 155 GHI 157
G I
Sbjct: 1010 GKI 1012
>emb|CAD22569.1| reverse transcriptase [Brassica napus]
Length = 139
Score = 100 bits (248), Expect = 3e-19
Identities = 44/97 (45%), Positives = 67/97 (68%)
Query: 37 RSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWI 96
R I +N ++A E H ++T T + K+VA+K D+SKAYDR++WD+L+ +++KMGF++ W+
Sbjct: 43 RLITDNILLAQEAFHALRTNTMCKAKFVAIKTDMSKAYDRVEWDFLEALLLKMGFAETWV 102
Query: 97 QWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLS 133
W+ SV Y +L+N E G + RGLRQG PLS
Sbjct: 103 SWIRWCASSVSYQILLNGEPKGNIQPSRGLRQGDPLS 139
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 99.8 bits (247), Expect = 4e-19
Identities = 45/108 (41%), Positives = 73/108 (66%), Gaps = 4/108 (3%)
Query: 35 PDRSILNNAMVAIEVIHFMKTKTRGQDKY--VALKLDISKAYDRMDWDYLKEIMIKMGFS 92
P R+I +N ++ E++HF++ G KY +A+K D+SKAYDR+ W++L+E+++++GF
Sbjct: 483 PGRAIADNVLITHEILHFLRVS--GAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFH 540
Query: 93 QKWIQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
KWI+W++ +V Y+ L+N G V+ RGLRQG PLS + LC
Sbjct: 541 DKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILC 588
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 99.8 bits (247), Expect = 4e-19
Identities = 44/104 (42%), Positives = 72/104 (68%)
Query: 37 RSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKWI 96
R I +N ++A E+ H ++T + K++A+K D+SKAYDR++W++++E++ KMGF +KWI
Sbjct: 394 RLISDNILIAQEMFHGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWI 453
Query: 97 QWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLC 140
W++ +V Y VL+N + G ++ RGLRQG PLS + LC
Sbjct: 454 SWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILC 497
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 98.6 bits (244), Expect = 8e-19
Identities = 43/109 (39%), Positives = 70/109 (63%)
Query: 36 DRSILNNAMVAIEVIHFMKTKTRGQDKYVALKLDISKAYDRMDWDYLKEIMIKMGFSQKW 95
+R + +N ++A E++H ++T + ++ K D+SKAYDR++W +LK I++ +GF+ W
Sbjct: 272 ERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTW 331
Query: 96 IQWMVVSTESVDYNVLVNAEHVGPVILGRGLRQGGPLSLSFYHLCRMSL 144
I WM+ SV Y+VL+N + G + RGLRQG PLS + LC +L
Sbjct: 332 INWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEAL 380
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.368 0.164 0.641
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,200,527,318
Number of Sequences: 2540612
Number of extensions: 41223436
Number of successful extensions: 164412
Number of sequences better than 10.0: 423
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 163939
Number of HSP's gapped (non-prelim): 464
length of query: 890
length of database: 863,360,394
effective HSP length: 137
effective length of query: 753
effective length of database: 515,296,550
effective search space: 388018302150
effective search space used: 388018302150
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 80 (35.4 bits)
Medicago: description of AC149205.14