BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.4 - phase: 0
(204 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT38805.1| hypothetical protein PGEC747E24.5 [Solanum demissum] 83 5e-15
emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana] gi|3... 74 3e-12
gb|AAU89759.1| hypothetical protein [Solanum tuberosum] 66 7e-10
gb|AAT38702.1| putative RNase H domain containing protein [Solan... 66 7e-10
dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cul... 63 6e-09
ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cu... 62 1e-08
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 62 1e-08
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 60 5e-08
ref|XP_470258.1| Unknown protein [Oryza sativa (japonica cultiva... 58 2e-07
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 58 2e-07
pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana g... 58 2e-07
dbj|BAD53882.1| hypothetical protein [Oryza sativa (japonica cul... 58 2e-07
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 57 2e-07
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 57 3e-07
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 57 3e-07
ref|NP_680665.1| hypothetical protein [Arabidopsis thaliana] 54 2e-06
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 54 3e-06
ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana] 53 5e-06
gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thali... 53 6e-06
gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D8... 53 6e-06
>gb|AAT38805.1| hypothetical protein PGEC747E24.5 [Solanum demissum]
Length = 1155
Score = 82.8 bits (203), Expect = 5e-15
Identities = 57/185 (30%), Positives = 89/185 (47%), Gaps = 6/185 (3%)
Query: 19 ILKAFNVSIHPPRSMLVKEVLWSPPIHSWIKGNCVGAFASGKAACGGIFRNRLGQFLGCF 78
I + F+VSI+ V V W P + K N G+ +G+ GGI RN LGQ + F
Sbjct: 974 INQIFDVSINHKN---VIRVNWIKPPTMFAKLNTDGSCVNGRCGGGGILRNALGQVIMAF 1030
Query: 79 AEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWN 138
L G S +AE + ++ + N ETDS+L+ +A + +PW++
Sbjct: 1031 TIKLGEGTSSWAEAMSMLHGMQLCIQRGVNMIIGETDSILLAKAITENWSIPWRMYIPVK 1090
Query: 139 NCQIIISNMNFLASHIYREGNSCADVLANIGLTLD---TYVYYYSLPLQVRSDYVKNRLG 195
Q ++ F+ +H RE N AD LA+I L+ D + Y +LP V+ +R+
Sbjct: 1091 KIQKMVEEHGFIINHCLREANQPADKLASISLSTDVNHVFKSYANLPSLVKGLVNLDRMN 1150
Query: 196 WPSFR 200
P+FR
Sbjct: 1151 LPTFR 1155
>emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana]
gi|3402761|emb|CAA20207.1| hypothetical protein
[Arabidopsis thaliana] gi|3080386|emb|CAA18706.1|
hypothetical protein [Arabidopsis thaliana]
gi|7485719|pir||T05150 hypothetical protein F18E5.40 -
Arabidopsis thaliana
Length = 229
Score = 73.6 bits (179), Expect = 3e-12
Identities = 42/136 (30%), Positives = 70/136 (50%), Gaps = 3/136 (2%)
Query: 37 EVLWSPPIHSWIKGNCVGAFA-SGKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
+V+W P + IK N G+ G+A+ GG+FRN +FL ++E + S AE
Sbjct: 60 KVVWKKPENGRIKLNFDGSRGREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAAL 119
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRW-NNCQIIISNM-NFLASH 153
R +E A + WLE D+ +++ + + N+ N ++++ + N + SH
Sbjct: 120 KRGLELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELNNCVLSH 179
Query: 154 IYREGNSCADVLANIG 169
+YREGN AD LA +G
Sbjct: 180 VYREGNRVADKLAKLG 195
>gb|AAU89759.1| hypothetical protein [Solanum tuberosum]
Length = 1095
Score = 65.9 bits (159), Expect = 7e-10
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 5 NSKLSASSSITEFTILKAFNVSIHPPRSMLV----KEVLWSPPIHSWIKGNCVGAFASGK 60
N K+S + F I ++ ++ S+ K V W+ P + +K N G+F+SG
Sbjct: 505 NLKMSLRMTFPSFEIGNSWRDLLNKVESLRPYPKWKIVHWNTPNINCVKINTDGSFSSGN 564
Query: 61 AACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVV 120
A G I R+ + + F+ S ++ AE A I + + ++N +LE DS LVV
Sbjct: 565 AGLGWIVRDHTRRMIMAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVV 624
Query: 121 QAFKNSAIVPWQVRNRWNNCQIIISNMNFLASHIYREGNSCADVLA 166
+N +++ + +++ MN +H YRE N AD LA
Sbjct: 625 DMVRNGQATNLKIKGVVEDIIQVVAKMNCEVNHCYREANQVADALA 670
>gb|AAT38702.1| putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 65.9 bits (159), Expect = 7e-10
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 5 NSKLSASSSITEFTILKAFNVSIHPPRSMLV----KEVLWSPPIHSWIKGNCVGAFASGK 60
N K+S + F I ++ ++ S+ K V W+ P + +K N G+F+SG
Sbjct: 327 NLKMSLRMTFPSFEIGNSWRDLLNKVESLRPYPKWKIVHWNTPNINCVKINTDGSFSSGN 386
Query: 61 AACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVV 120
A G I R+ + + F+ S ++ AE A I + + ++N +LE DS LVV
Sbjct: 387 AGLGWIVRDHTRRMIMAFSIPSSCSSNNLAEALAARFGILWCLQQGFHNCYLELDSKLVV 446
Query: 121 QAFKNSAIVPWQVRNRWNNCQIIISNMNFLASHIYREGNSCADVLA 166
+N +++ + +++ MN +H YRE N AD LA
Sbjct: 447 DMVRNGQATNLKIKGVVEDIIQVVAKMNCEVNHCYREANQVADALA 492
>dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 240
Score = 62.8 bits (151), Expect = 6e-09
Identities = 43/137 (31%), Positives = 62/137 (44%), Gaps = 8/137 (5%)
Query: 39 LWSPPIHSWIKGNCVGA--FASGKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGAM 96
+W P W+K N G+ ++G A+ GG++R+ G FL +AE + S AEL
Sbjct: 78 IWRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALR 137
Query: 97 RSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIISNM----NFLAS 152
R +E A W W E DS VV + A V Q C+ I + + + S
Sbjct: 138 RGLELAVRNGWRRVWAEGDSKAVVDVVCDRADV--QSEEDLRLCREIAALLPQLDDMAVS 195
Query: 153 HIYREGNSCADVLANIG 169
H+ R GN A A +G
Sbjct: 196 HVRRGGNKVAHGFAELG 212
>ref|XP_466880.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|48717057|dbj|BAD23746.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 212
Score = 62.0 bits (149), Expect = 1e-08
Identities = 42/136 (30%), Positives = 60/136 (43%), Gaps = 8/136 (5%)
Query: 40 WSPPIHSWIKGNCVGA--FASGKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGAMR 97
W P WIK N G+ A+ A+ GG++R+ G F+ +AE + S AEL R
Sbjct: 51 WRKPEAGWIKLNFDGSSKHATKIASIGGVYRDHEGAFVLGYAERIGRATSSVAELAALRR 110
Query: 98 SIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIISNM----NFLASH 153
+E W W E DS VV + A V + C+ I + + + SH
Sbjct: 111 GLELVVRNGWRRVWAEGDSKTVVDVVCDRANV--RSEEDLRQCREIAALLPLIDDMAVSH 168
Query: 154 IYREGNSCADVLANIG 169
+YR GN A A +G
Sbjct: 169 VYRSGNKVAHGFARLG 184
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 61.6 bits (148), Expect = 1e-08
Identities = 48/167 (28%), Positives = 74/167 (43%), Gaps = 4/167 (2%)
Query: 33 MLVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFA 90
++ + + W P W+ N GA G+A GG+ R+ G +L FA + ++ A
Sbjct: 501 LVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLA 560
Query: 91 ELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNF 149
EL G + A + W LE DS LVV ++ + C IS +
Sbjct: 561 ELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIV 620
Query: 150 LASHIYREGNSCADVLANIGLTLD-TYVYYYSLPLQVRSDYVKNRLG 195
+H+YRE N AD LAN TL ++ S P V S +++ +G
Sbjct: 621 RITHVYREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLEDVMG 667
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 59.7 bits (143), Expect = 5e-08
Identities = 47/147 (31%), Positives = 62/147 (41%), Gaps = 4/147 (2%)
Query: 30 PRSMLVKEVL-WSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGN 86
P + V+ ++ W P W+K GA G AA GG RN G++LG FA +
Sbjct: 1052 PNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCA 1111
Query: 87 SLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQ-IIIS 145
+ AEL GA + A K + L+ D LVV + CQ
Sbjct: 1112 APLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGVSNAHPLSFLVRLCQGFFTR 1171
Query: 146 NMNFLASHIYREGNSCADVLANIGLTL 172
+ SH+YRE N AD LAN TL
Sbjct: 1172 DWLVRVSHVYREANRLADGLANYAFTL 1198
>ref|XP_470258.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
gi|22773232|gb|AAN06838.1| Unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 210
Score = 57.8 bits (138), Expect = 2e-07
Identities = 42/136 (30%), Positives = 63/136 (45%), Gaps = 6/136 (4%)
Query: 40 WSPPIHSWIKGNCVGAF--ASGKAACGGIFRNRLGQFLGCFAEGLSYG--NSLFAELCGA 95
W P W+K N G+ A+G A+ GG FR+ G F+ +AE + G +S AEL
Sbjct: 47 WRKPEVGWMKLNFDGSRNDATGAASIGGAFRDHEGAFVAGYAERMIVGGASSFTAELAAL 106
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVVQAFKNSA-IVPWQVRNRWNNCQIIISNMNFLA-SH 153
R +E A W W E DS VV A + + R + ++ ++ +A SH
Sbjct: 107 RRGLELAARYGWRRVWAEGDSRAVVDVVHGRAGVRSEEDRRQCGEIAALLPALDGVAVSH 166
Query: 154 IYREGNSCADVLANIG 169
+ R+ N A A +G
Sbjct: 167 LCRDENKVAHGFAKLG 182
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 57.8 bits (138), Expect = 2e-07
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 38 VLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
+ WS P W K N GA G A+ GG+ R+ G + G FA + ++ AEL G
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNFLASHI 154
+ A + +E DS +VV K + C IS + SH+
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHV 263
Query: 155 YREGNSCADVLANIGLTLDTYVYYYSLPLQVRS 187
YRE N AD LAN Y +SLPL S
Sbjct: 264 YREANRLADGLAN---------YAFSLPLGFHS 287
>pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana
gi|6630448|gb|AAF19536.1| F23N19.5 [Arabidopsis
thaliana]
Length = 233
Score = 57.8 bits (138), Expect = 2e-07
Identities = 48/157 (30%), Positives = 65/157 (40%), Gaps = 7/157 (4%)
Query: 31 RSMLVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSL 88
RS + ++V WS P W K N GA G A GG RN G++ CF L+ G L
Sbjct: 56 RSRMERQVRWSKPSLGWCKLNTDGASHGNPGLATAGGALRNEYGEW--CFGFALNIGRCL 113
Query: 89 --FAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS- 145
AEL G + A + LE DS +VV + + C +S
Sbjct: 114 APLAELWGVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSR 173
Query: 146 NMNFLASHIYREGNSCADVLANIGLTLDTYVYYYSLP 182
+ H+YRE N AD LAN L + ++ P
Sbjct: 174 DWIVRIGHVYREANRLADGLANYAFDLPLGYHAFASP 210
>dbj|BAD53882.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|53791828|dbj|BAD53894.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 217
Score = 57.8 bits (138), Expect = 2e-07
Identities = 44/151 (29%), Positives = 71/151 (46%), Gaps = 15/151 (9%)
Query: 26 SIHPPRSMLVKEVLWSPPIHSWIKGNCVGAF---ASGKAACGGIFRNRLGQFLGCFAEGL 82
S PP + + V W+PP H W+K N G+ SG+A+ GG+ R+ G+ L FAE
Sbjct: 32 SFSPPTRITL--VRWTPPRHGWVKLNFDGSVHNDGSGRASIGGVIRDDHGRVLLAFAERT 89
Query: 83 SYGNSLFAELCGAMRSIEFAQSKSWNN-FWLETDSMLVVQAFK----NSAIVPWQVRN-R 136
+ E +R ++ A WN+ +E D + +V+ + ++ I P + +
Sbjct: 90 PHATIGVVEARALIRGLQLALDHGWNDRLLVEGDDLTLVRLLRCESTHTRIPPAMLDDIL 149
Query: 137 WNNCQIIISNMNFLASHIYREGNSCADVLAN 167
W ++ S H YREGN AD L +
Sbjct: 150 W----LLDSFRVCEVQHAYREGNQVADALCH 176
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 57.4 bits (137), Expect = 2e-07
Identities = 52/182 (28%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 16 EFTILKAFNVSIHPPRSMLVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQ 73
E I AF S + + V W P W+K N GA G A GG+ R+ G
Sbjct: 129 EVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGA 188
Query: 74 FLGCFAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQV 133
++G FA + ++ AEL G + A + LE DS +VV +
Sbjct: 189 WIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPL 248
Query: 134 RNRWNNCQIIISNMNFL-ASHIYREGNSCADVLANIGLTLDTYVYYYSLPLQVRSDYVKN 192
C +S + SH+YRE N AD LAN +L ++ L+ R D V +
Sbjct: 249 SFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHL----LESRPDVVSS 304
Query: 193 RL 194
L
Sbjct: 305 IL 306
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 57.0 bits (136), Expect = 3e-07
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Query: 28 HPPRSMLVKEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYG 85
H R+ + + + W P W+K GA G AA G N G++LG FA +
Sbjct: 790 HVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALNIGSC 849
Query: 86 NSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQ-III 144
++ AEL GA + A K + L DS LVV + CQ
Sbjct: 850 DAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKAHPLSFLVRLCQGFFT 909
Query: 145 SNMNFLASHIYREGNSCADVLANIGLTL 172
+ SH+YRE N AD LAN L
Sbjct: 910 RDWLVRVSHVYREANRLADGLANYAFFL 937
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 57.0 bits (136), Expect = 3e-07
Identities = 48/152 (31%), Positives = 66/152 (42%), Gaps = 18/152 (11%)
Query: 38 VLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
+ W+PP W K N GA G A GG+ R+ GQ+ F + ++ AEL G
Sbjct: 450 IKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELWGV 509
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVV----QAFKNSAIVPWQVRNRWNNCQIIISNMNFLA 151
+ A + LE DS LVV ++S + + VR + I +
Sbjct: 510 YYGLHIAWERGIRRLELEVDSTLVVGFLQAGIEDSHPLSFLVRLCYG---FISRDWIVRI 566
Query: 152 SHIYREGNSCADVLANIGLTLDTYVYYYSLPL 183
SH+YRE N AD LAN Y +SLPL
Sbjct: 567 SHVYREANRLADGLAN---------YAFSLPL 589
>ref|NP_680665.1| hypothetical protein [Arabidopsis thaliana]
Length = 214
Score = 54.3 bits (129), Expect = 2e-06
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 8/184 (4%)
Query: 19 ILKAFNVSIHPPRSMLVKE---VLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQ 73
+ KA+ V + PR ++ +E + WS W K N GA G AA GG+ R G+
Sbjct: 23 VAKAYAV-VGVPRRLVGREERLISWSRLSEGWCKLNTDGASRGNPGLAAAGGVLRESNGE 81
Query: 74 FLGCFAEGLSYGNSLFAELCGAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQV 133
+ FA + ++ AEL G + A + LE DS +VV + +
Sbjct: 82 WRRGFAINIGICSAPLAELWGVYYGLFMAWECKVSQLELEVDSEVVVGFLRTGISESHPL 141
Query: 134 RNRWNNCQIIIS-NMNFLASHIYREGNSCADVLANIGLTLDT-YVYYYSLPLQVRSDYVK 191
C IS + SH YRE N AD LAN +L + ++Y P V S ++
Sbjct: 142 SFLVRMCYGFISRDWIVRISHKYREANRLADGLANYAFSLPLGFQFFYVCPDAVYSVMLE 201
Query: 192 NRLG 195
+R G
Sbjct: 202 DRNG 205
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 53.9 bits (128), Expect = 3e-06
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 4/164 (2%)
Query: 36 KEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELC 93
++++W P W N GA G A G+ R+ G +LG FA + ++ AEL
Sbjct: 224 RQIVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVCSAPLAELW 283
Query: 94 GAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQ-IIISNMNFLAS 152
G + A + LE +S LVV ++ + CQ I + +
Sbjct: 284 GVYYGLVTAWERGVRRVVLEVESKLVVGFLQSGIRDTHPLAFLVRLCQGFIARDWLVRVT 343
Query: 153 HIYREGNSCADVLANIGLTLDTYVYYY-SLPLQVRSDYVKNRLG 195
H+YRE N AD LAN TL + P V S V++ +G
Sbjct: 344 HVYREANRLADGLANYAFTLPIGLQLLDDCPASVNSIMVEDSVG 387
>ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana]
Length = 175
Score = 53.1 bits (126), Expect = 5e-06
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 3/150 (2%)
Query: 36 KEVLWSPPIHSWIKGNCVGAFAS--GKAACGGIFRNRLGQFLGCFAEGLSYGNSLFAELC 93
++V WS P W K N GA G A GG RN G++ FA + ++ AEL
Sbjct: 3 RQVRWSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAPLAELW 62
Query: 94 GAMRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNFLAS 152
G + A + LE DS +VV + + C +S +
Sbjct: 63 GVYYGLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIG 122
Query: 153 HIYREGNSCADVLANIGLTLDTYVYYYSLP 182
H+YRE N AD LAN L + ++ P
Sbjct: 123 HVYREANRLADELANYAFDLPLGYHGFASP 152
>gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
gi|18394475|ref|NP_564020.1| hypothetical protein
[Arabidopsis thaliana] gi|9665118|gb|AAF97302.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 52.8 bits (125), Expect = 6e-06
Identities = 40/138 (28%), Positives = 59/138 (41%), Gaps = 3/138 (2%)
Query: 38 VLWSPPIHSWIKGNCVGAFASGK--AACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
+ WSPP W K N GA A GG+ R+ G + F+ + ++ AEL GA
Sbjct: 102 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 161
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNFLASHI 154
+ A + +E DS +VV + + C ++S + + SH+
Sbjct: 162 YYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHV 221
Query: 155 YREGNSCADVLANIGLTL 172
YRE N AD LAN L
Sbjct: 222 YREANRLADGLANYAFFL 239
>gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D86310 protein
F1L3.4 [imported] - Arabidopsis thaliana
Length = 253
Score = 52.8 bits (125), Expect = 6e-06
Identities = 40/138 (28%), Positives = 59/138 (41%), Gaps = 3/138 (2%)
Query: 38 VLWSPPIHSWIKGNCVGAFASGK--AACGGIFRNRLGQFLGCFAEGLSYGNSLFAELCGA 95
+ WSPP W K N GA A GG+ R+ G + F+ + ++ AEL GA
Sbjct: 83 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 142
Query: 96 MRSIEFAQSKSWNNFWLETDSMLVVQAFKNSAIVPWQVRNRWNNCQIIIS-NMNFLASHI 154
+ A + +E DS +VV + + C ++S + + SH+
Sbjct: 143 YYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHV 202
Query: 155 YREGNSCADVLANIGLTL 172
YRE N AD LAN L
Sbjct: 203 YREANRLADGLANYAFFL 220
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,265,263
Number of Sequences: 2540612
Number of extensions: 13018606
Number of successful extensions: 24634
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 24567
Number of HSP's gapped (non-prelim): 73
length of query: 204
length of database: 863,360,394
effective HSP length: 122
effective length of query: 82
effective length of database: 553,405,730
effective search space: 45379269860
effective search space used: 45379269860
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 72 (32.3 bits)
Medicago: description of AC149197.4