BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149197.1 + phase: 0 /pseudo
(610 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 448 e-124
gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cult... 443 e-123
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 441 e-122
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 435 e-120
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa (japonica cultivar... 433 e-120
gb|AAP53216.1| putative retroelement [Oryza sativa (japonica cul... 423 e-117
ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cu... 419 e-115
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 412 e-113
ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sa... 395 e-108
ref|XP_476137.1| putative polyprotein [Oryza sativa (japonica cu... 395 e-108
ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cu... 393 e-107
gb|AAP51772.1| putative pol polyprotein [Oryza sativa (japonica ... 370 e-101
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 367 e-100
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 350 1e-94
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] gi|99721|pir|... 315 4e-84
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 314 6e-84
gb|AAP53029.1| putative retrotransposon-related protein [Oryza s... 312 2e-83
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 308 3e-82
gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis ... 307 6e-82
emb|CAA37924.1| unnamed protein product [Arabidopsis thaliana] g... 307 6e-82
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 448 bits (1153), Expect = e-124
Identities = 223/422 (52%), Positives = 297/422 (69%), Gaps = 23/422 (5%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
+L+T +HMCP RD F T+E V G VLMG+D C+VA IG V K DG +RTL++
Sbjct: 508 ILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVR 567
Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS- 302
SL+ KYS G+L V+KG LV++KA + +LY L+G + G+
Sbjct: 568 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNV 627
Query: 303 AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
AAVS S+ D T LWHM LGHMTE G+ LSK+G L Q I KL+FC+H +F K K+V
Sbjct: 628 AAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 687
Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
F+T+TH T+GILDY+HSDLWGP++ TS+GG RYMMTI+DD+ RKVW YFL++K + F F
Sbjct: 688 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVF 747
Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
K+W+ +VE QT + VK L TDN +EFCS F +C + GI RH T+P PQQNGVAERM
Sbjct: 748 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 807
Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
RT++ +ARC+LSNAGL + W EA STAC+L+NRSP A+D K P ++WSG+ +YS+
Sbjct: 808 RTIISKARCLLSNAGL--PKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSD 865
Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
LR+FGC AYA V++GKL PRA++CIFL Y S KGY+LWC P+++K+++SR+V F+E
Sbjct: 866 LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC--PETKKVVISRNVVFHESV 923
Query: 603 LL 604
+L
Sbjct: 924 ML 925
>gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1241
Score = 443 bits (1140), Expect = e-123
Identities = 221/422 (52%), Positives = 293/422 (69%), Gaps = 23/422 (5%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
+LDT +HMCP RD F T+E V G VLMG+D C+VA IG V K DG +RTL +
Sbjct: 210 ILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVR 269
Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS- 302
SL+ KYS G+L V+KG LV++KA + +LY L+G + G+
Sbjct: 270 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNV 329
Query: 303 AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
AAVS S+ D T LWHM LGHM+E G+ LSK+G L Q I KL+FC+H +F K K+V
Sbjct: 330 AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 389
Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
F+T+TH T+GILDY+HSDLWGP++ TS+GG RYMMTI+DD+ RKVW YFL++K + F F
Sbjct: 390 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVF 449
Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
K+W+ +VE QT + VK L TDN +E CS F +C + GI RH T+P PQQNGVAERM
Sbjct: 450 KEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 509
Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
RT++ +ARCMLSNA L + W EA STAC+L+NRSP A+D K P ++WSG+ +YS+
Sbjct: 510 RTIISKARCMLSNASL--PKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSD 567
Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
LR+FGC AYA V++GKL PR ++CIFL Y S KGY+LWC P+++K+++SR+V F+E
Sbjct: 568 LRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWC--PETKKVVISRNVVFHESI 625
Query: 603 LL 604
+L
Sbjct: 626 ML 627
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 441 bits (1134), Expect = e-122
Identities = 222/422 (52%), Positives = 295/422 (69%), Gaps = 24/422 (5%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
+LDT +HMCP RD F T+E V G VLMG+D C+VA IG V K DG +RTL++
Sbjct: 301 ILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVR 360
Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGSA 303
SL+ KYS G+L V+KG LV++KAS + +LY LQG + G+
Sbjct: 361 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNV 420
Query: 304 A-VSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
A VS S+ D T LWHM LGHM+E G+ LSK+G L Q I KL+FC+H +F K K+V
Sbjct: 421 ATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVK 480
Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
F+T+TH T+GILDY+HSDLWGP++ TS+GG RYMMTI+DD+ RKVW YFL++K + F F
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVF 540
Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
K+W+ +VE QT + VK L TDN +EFCS F +C + GI RH T+P PQQNGVAERM
Sbjct: 541 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600
Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
R ++ +ARCMLSNAGL + W EA STAC+L+NRSP S + K P ++WSG+ +YS+
Sbjct: 601 RIIISKARCMLSNAGL--PKQFWAEAVSTACYLINRSP-SYANKKTPIEVWSGSPANYSD 657
Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
L++FGC AYA V++GKL PRA++CIFL Y S KGY+LWC P+++K+++SR+V F+E
Sbjct: 658 LKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGYKLWC--PETKKVVISRNVVFHESI 715
Query: 603 LL 604
+L
Sbjct: 716 ML 717
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 435 bits (1119), Expect = e-120
Identities = 218/422 (51%), Positives = 290/422 (68%), Gaps = 23/422 (5%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
+LDT + +HMCP RD F T+E + G VLMG+D C+VA IG V K DG +RTL++
Sbjct: 336 ILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVR 395
Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS- 302
SL+ KYS G+L V+KG LV++KA + +LY L+G + G+
Sbjct: 396 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNV 455
Query: 303 AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
AAVS S+ D T LWHM LGHM+E G+ LSK+ L Q I KL+FC+H +F K K+V
Sbjct: 456 AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVK 515
Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
F+T+TH T+GILDY+HSDLWGP+ TS+GG RYMMTI+DD+ RKVW YFL++K + F F
Sbjct: 516 FNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVF 575
Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
K+W+ +VE QT K VK L TDN +EFCS F +C + GI H T+P PQQNGVAERM
Sbjct: 576 KEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMN 635
Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
++ +ARCMLSNA L + W EA ST C+L+NRSP A D K P ++WSG+ +YS+
Sbjct: 636 MAIISKARCMLSNADL--PKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSD 693
Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
LR+FGC AYA V++GKL PRA++CIFL Y S KGY+LWC P+++K+++SR+V F+E
Sbjct: 694 LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC--PETKKVVISRNVVFHESV 751
Query: 603 LL 604
+L
Sbjct: 752 IL 753
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa (japonica cultivar-group)]
gi|50922629|ref|XP_471675.1| OSJNBa0093P23.9 [Oryza
sativa (japonica cultivar-group)]
Length = 944
Score = 433 bits (1113), Expect = e-120
Identities = 220/422 (52%), Positives = 292/422 (69%), Gaps = 27/422 (6%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
+LDT +HMCP RD F T+E V G VLMG+D C+VA IGIV K DG + TL++
Sbjct: 133 ILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVR 192
Query: 260 ------ESLVC---------KYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS- 302
SL+ KYS G+L V+KG LV++KA + +LY L+G + G+
Sbjct: 193 HIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNV 252
Query: 303 AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVS 362
AAVS S+ D T LWHM LGHM+E G+ LSK+G L Q I KL+FC+H +F K K+V
Sbjct: 253 AAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVK 312
Query: 363 FSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTF 422
F+T+TH T+GILDY+HSDLWGP++ TS+GG RY+MTI+DD+ RKVW YFL++K + F F
Sbjct: 313 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVF 372
Query: 423 KKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMI 482
K+W+ +VE QT + VK L TDN +EFCS F +C + GI RH T PQQNGVAERM
Sbjct: 373 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYT----PQQNGVAERMN 428
Query: 483 RTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSN 542
RT++ +ARCMLSNAGL + W A ST C+L+NRSP A+D K P +WSG +YS+
Sbjct: 429 RTIISKARCMLSNAGL--PKQFWAAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSD 486
Query: 543 LRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDA 602
LR+FGC AYA V++GKL PRA++CIFL Y+S KGY+LWC P+++K+++SR+V F+E
Sbjct: 487 LRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWC--PETKKVVISRNVVFHESV 544
Query: 603 LL 604
+L
Sbjct: 545 ML 546
>gb|AAP53216.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533254|ref|NP_920929.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|20087076|gb|AAM10749.1| Putative retroelement [Oryza
sativa] gi|19920130|gb|AAM08562.1| Putative retroelement
[Oryza sativa]
Length = 1225
Score = 423 bits (1087), Expect = e-117
Identities = 210/405 (51%), Positives = 279/405 (68%), Gaps = 28/405 (6%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTNES 261
+LDT +HMC RD F T+E V G VLMG+D C+VA
Sbjct: 301 ILDTACTYHMCSNRDWFATYEAVQGGTVLMGDDTPCEVAGY------------------- 341
Query: 262 LVCKYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS-AAVSSSMPKKDVTKLWH 319
KYS G+L V+KG LV++KA + +LY L+G + G+ AAVS S+ D T LWH
Sbjct: 342 ---KYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWH 398
Query: 320 MHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGILDYIHS 379
M LGHM+E G+ LSK+G L Q I KL+FC+H +F K K+V F+T+TH T+GILDY+HS
Sbjct: 399 MRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 458
Query: 380 DLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKK 439
DLWGP++ TS+GG RYMMTI+DD+ RKVW YFL++K + F FK+W+ +VE QT + VK
Sbjct: 459 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 518
Query: 440 LITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL* 499
L TDN ++FCS F +C + GI RH T+P PQQNGVAERM RT++ +ARCMLSNAGL
Sbjct: 519 LRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGL- 577
Query: 500 N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKL 559
+ W EA STAC+L+NRSP A+D K P +WSG+ +YS+LR+FGC AYA V++ KL
Sbjct: 578 -PKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKL 636
Query: 560 APRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALL 604
PRA++CIFL Y S KGY+LWC P+++K+++SR+V F+E +L
Sbjct: 637 EPRAIKCIFLGYPSGVKGYKLWC--PETKKVVISRNVVFHESVML 679
>ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475213|gb|AAT44282.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1243
Score = 419 bits (1076), Expect = e-115
Identities = 210/400 (52%), Positives = 281/400 (69%), Gaps = 18/400 (4%)
Query: 215 RDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN--------ESLVCKY 266
+D F T+E + G VLMG+D C+VA IG V K DG +RTL++ SL+ Y
Sbjct: 299 QDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISLY 358
Query: 267 SAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS-AAVSSSMPKKDVTKLWHMHLGH 324
G+L V+KG LV++K + +LY L+G + G+ AAV S+ D T LWHM LGH
Sbjct: 359 ----GILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSNSDATNLWHMRLGH 414
Query: 325 MTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGILDYIHSDLWGP 384
M+E G+ LSK+G L Q I KL+FC+H +F K K+V F+T+TH T+GILDY+HSDLWGP
Sbjct: 415 MSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGP 474
Query: 385 SKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN 444
+ TS+GG RYMMTI+DD+ RKVW YFL++K + F FK+W+ +VE QT + VK L TDN
Sbjct: 475 AHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDN 534
Query: 445 *LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDL 504
+EFCS F +C + GI H T P PQQN VAERM RT++ +ARCMLSNAGL +
Sbjct: 535 GMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGL--PKQF 592
Query: 505 WVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKLAPRAV 564
W EA STAC+L+NRSP A+D K P ++WSG+ +YS+LR+FGC AYA V++GKL PRA+
Sbjct: 593 WAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAI 652
Query: 565 ECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALL 604
+CIFL YAS KGY+LWC P+++K+++SR+V F+E +L
Sbjct: 653 KCIFLGYASGVKGYKLWC--PETKKVVISRNVVFHESVIL 690
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1373
Score = 412 bits (1058), Expect = e-113
Identities = 215/432 (49%), Positives = 282/432 (64%), Gaps = 29/432 (6%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTNE 260
+LD+ +FH+C R+ F++++PV G VV MG+D C + IG V KT+DG+ RTL N
Sbjct: 291 ILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNV 350
Query: 261 SLV-----------------CKYSAEGGVLMVSKGYLVLLKAS-RIDSLYVLQGIVVTGS 302
+ KYS GVL VSKG LV LK LYVL+G +TGS
Sbjct: 351 RYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGS 410
Query: 303 ----AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQ 358
AA+++ P K T LWHM LGHM+ GM L K+ L K++FC+H +F K
Sbjct: 411 DSAAAAITNDEPSK--TNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKH 468
Query: 359 KKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNET 418
K+V F+T+ H TKG LDY+H+DLWGPSK S GG RYM+TIIDD+ RKVW YFL++K++T
Sbjct: 469 KRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDT 528
Query: 419 FPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVA 478
F FK W++++E QT + VK L TDN EFCS FN++C GI RH TIP PQQNGVA
Sbjct: 529 FTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVA 588
Query: 479 ERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLV 538
ERM RT++ RARCMLS+A + + W EAASTAC+L+NRSP L+ K P ++WSG
Sbjct: 589 ERMNRTIISRARCMLSHARM--NKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 646
Query: 539 DYSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTF 598
DYS L++FGC AYA V++GKL PRAV+C+FL Y S KGY+LW +P++ K +SR V F
Sbjct: 647 DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW--NPETGKTFMSRSVVF 704
Query: 599 NEDALLSSGKQS 610
NE + ++ S
Sbjct: 705 NESVMFTNSLPS 716
>ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sativa]
gi|14029020|gb|AAK52561.1| Putative retroelement pol
polyprotein [Oryza sativa]
Length = 1326
Score = 395 bits (1016), Expect = e-108
Identities = 211/426 (49%), Positives = 281/426 (65%), Gaps = 28/426 (6%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTL--- 257
+LDT +FH+C RD F++++ V G VV MG+D ++ IG V KT+DG+ RTL
Sbjct: 293 ILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 352
Query: 258 --------------TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTGS 302
T ++ KYS+ GGV+ VSKG LV ++ +LYVL+G + GS
Sbjct: 353 RHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 412
Query: 303 ---AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
AAVS P K T LWHM LGHM+E GM L K+ L K++FC+H VF K K
Sbjct: 413 VTAAAVSKDEPIK--TNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHK 470
Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
+V F+T+ HRTKGILDY+H+DLWGPS+ GG RYM+TIIDD+ RKVW YFL++K++TF
Sbjct: 471 RVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTF 530
Query: 420 PTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 479
FK+W++ +E QT K VK L TDN EFCS F+++C GI RH TIP PQQNGVAE
Sbjct: 531 AAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAE 590
Query: 480 RMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVD 539
RM RT++ +ARCMLSNA + + W EAA+TAC+L+NRSP L+ K P ++WSG D
Sbjct: 591 RMNRTIISKARCMLSNARM--NKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPAD 648
Query: 540 YSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
YS LR+FGC AYA V++GKL PRA++C+FL Y S K Y+LW +P++ K + R V FN
Sbjct: 649 YSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKRYKLW--NPETNKTFMRRSVVFN 706
Query: 600 EDALLS 605
+ + +
Sbjct: 707 KSVMFN 712
>ref|XP_476137.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46576026|gb|AAT01387.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1175
Score = 395 bits (1014), Expect = e-108
Identities = 208/426 (48%), Positives = 280/426 (64%), Gaps = 28/426 (6%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTL--- 257
+LDT +FH+C RD F++++ V G VV MG+D ++ IG V KT+DG+ RTL
Sbjct: 188 ILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 247
Query: 258 --------------TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTG- 301
T ++ KYS GGV+ VSKG LV ++ +LYVL+G + G
Sbjct: 248 RHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGY 307
Query: 302 --SAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
+A VS P K T +WHM LGHM+E GM L K+ L ++FC+H VF K K
Sbjct: 308 VTAAVVSKDEPSK--TNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHK 365
Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
+V F+T+ HRTKGILDY+H+DLWGPS+ S GG RYM+TIIDD+ RKVW YFL++K++TF
Sbjct: 366 RVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTF 425
Query: 420 PTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 479
FK+W+++++ QT K VK L TDN FCS F+++C GI H TIP PQQNGVAE
Sbjct: 426 AAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMHHTIPYTPQQNGVAE 485
Query: 480 RMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVD 539
RM RT++ +ARCMLSNA + + W EAA TAC+L+NRSP +L+ K P ++WSG +
Sbjct: 486 RMNRTIISKARCMLSNARM--NKRFWAEAAKTACYLINRSPSISLNKKTPIEVWSGMPAN 543
Query: 540 YSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
YS LR+FGC AYA VN+GKL PRA++C+FL Y S KGY+LW +P++ K +SR V FN
Sbjct: 544 YSQLRVFGCTAYAHVNNGKLEPRAIKCLFLGYGSGVKGYKLW--NPETNKTFMSRSVVFN 601
Query: 600 EDALLS 605
E + +
Sbjct: 602 ESVMFN 607
>ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa (japonica
cultivar-group)] gi|40538906|gb|AAR87163.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1322
Score = 393 bits (1009), Expect = e-107
Identities = 211/421 (50%), Positives = 279/421 (66%), Gaps = 28/421 (6%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDC-GVVLMGNDVQCKVA*IGIVHFKTNDGVVRTL--- 257
+LDT +FH+C RD F++++ V VV MG+D ++ IG V KT+DG+ RTL
Sbjct: 293 ILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDV 352
Query: 258 --------------TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTGS 302
T ++ KYS GGV+ VSKG LV ++ +LYVL+G + GS
Sbjct: 353 RHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 412
Query: 303 ---AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
AAV+ P K T LWHM LGHM+E GM L K+ L ++FC+H VF K K
Sbjct: 413 VTAAAVTKDEPSK--TNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHK 470
Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
+V F+T+ HRTKGILDY+H+DLWGPS+ S GG RYM+TIIDD+ RK W YFL++K++TF
Sbjct: 471 RVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTF 530
Query: 420 PTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 479
FK+ ++++E QT K VK L TDN EFCS F+++C GI RH TIP PQQNGVAE
Sbjct: 531 AAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAE 590
Query: 480 RMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVD 539
RM RT++ +ARCMLSNA + + W EAA+TAC+L+NRSP L+ K P +IWSG D
Sbjct: 591 RMNRTIISKARCMLSNARM--NKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPAD 648
Query: 540 YSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
YS LR+FGC AYA V++GKL PRA++C+FL Y S KGY+LW +P++ K +SR+V FN
Sbjct: 649 YSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLW--NPETNKTFMSRNVIFN 706
Query: 600 E 600
E
Sbjct: 707 E 707
>gb|AAP51772.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530366|ref|NP_919485.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|19551102|gb|AAL91607.1| Putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa]
Length = 1005
Score = 370 bits (951), Expect = e-101
Identities = 201/412 (48%), Positives = 265/412 (63%), Gaps = 28/412 (6%)
Query: 216 DLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTL----------------- 257
D F++++ V G VV MG+D ++ IG V KT+DG+ TL
Sbjct: 44 DWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTCTLKDVRHILGMARNLISLS 103
Query: 258 TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTGS---AAVSSSMPKKD 313
T ++ KYS GGV+ VSKG LV ++ +LYVL+G + GS AAV+ P K
Sbjct: 104 TLDAEGYKYSGSGGVVKVSKGSLVYIIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSK- 162
Query: 314 VTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGI 373
T LWHM LGHM+E GM L K+ L ++FC+H VF K K V F+ + HR KGI
Sbjct: 163 -TNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKWVKFNISVHRIKGI 221
Query: 374 LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 433
LDY+H+DLWGPS S GG RYM+TIIDD RKVW YFL++K++TF FK+W++++E QT
Sbjct: 222 LDYVHADLWGPSHKPSLGGARYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIERQT 281
Query: 434 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 493
K VK L TDN EFCS F+++ GI RH TIP PQQNGVAERM RT++ +A CML
Sbjct: 282 EKEVKVLRTDNGGEFCSDAFDDYYRKEGIVRHYTIPYTPQQNGVAERMNRTIISKAHCML 341
Query: 494 SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 553
SNA + + W EAA+TAC+L+NRSP L+ K P ++WSG DYS LR+FGC AYA
Sbjct: 342 SNARM--NKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMSADYSQLRVFGCTAYAH 399
Query: 554 VNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDALLS 605
V++GKL PRA++C+FL Y S KGY+LW +P++ K +SR V FNE + +
Sbjct: 400 VDNGKLEPRAIKCLFLGYGSGVKGYKLW--NPETNKTFMSRSVIFNESVMFN 449
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1170
Score = 367 bits (943), Expect = e-100
Identities = 175/330 (53%), Positives = 239/330 (72%), Gaps = 6/330 (1%)
Query: 277 KGYLVLLKAS-RIDSLYVLQGIVVTGSAA-VSSSMPKKDVTKLWHMHLGHMTEKGMHLLS 334
KG LV++KA + +LY LQG + G+ A VS+ + D T LWHM LGHM+E G+ LS
Sbjct: 428 KGSLVVMKADIKSANLYHLQGTTILGNVATVSALLSNSDATNLWHMRLGHMSEIGLAELS 487
Query: 335 KQGRLGKQGIDKLEFCKHYVFWKQKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRR 394
K+G L Q I KL+FC+H +F K +V F+T+TH T+GILDY+HS+LWGP++ TS+GG R
Sbjct: 488 KRGLLDGQSIGKLKFCEHCIFGKHNRVKFNTSTHTTEGILDYVHSNLWGPARKTSFGGAR 547
Query: 395 YMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFN 454
YMMT +DD+ RKVW YFL++K + F FK+W+ +V+ QT + VK L TDN +E CS F
Sbjct: 548 YMMTTVDDYSRKVWSYFLKHKYQAFDVFKEWKTMVKKQTERKVKILRTDNGMELCSKIFK 607
Query: 455 EFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACH 514
+C GI RH T+P PQQNGVAERM RT++ ++RCML GL + W EA STAC+
Sbjct: 608 SYCKCEGIVRHYTVPHTPQQNGVAERMKRTIISKSRCMLPYVGL--PKQFWAEAVSTACY 665
Query: 515 LVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASE 574
L+NRSP A+D K P ++WSG+ +YS+LR+FGC AYA V++GKL PRA++CIFL Y S
Sbjct: 666 LINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCIAYAHVDNGKLEPRAIKCIFLGYPSG 725
Query: 575 SKGYRLWCSDPKSQKLILSRDVTFNEDALL 604
KGY+LWC P+++K+++SR+V F+E +L
Sbjct: 726 VKGYKLWC--PETKKVVISRNVVFHESVML 753
Score = 59.7 bits (143), Expect = 3e-07
Identities = 30/58 (51%), Positives = 37/58 (63%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN 259
+LDT +HMCP RD F T+E V G VLMG+D VA IGIV K DG +R L++
Sbjct: 253 ILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPFGVAGIGIVQIKMFDGCIRILSD 310
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301697|pir||B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1335
Score = 350 bits (897), Expect = 1e-94
Identities = 187/444 (42%), Positives = 267/444 (60%), Gaps = 24/444 (5%)
Query: 183 LILAMTLLYLLSPLIRGVKLLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*I 242
++LA +++ I +LDT +FHM P +D F F+ + G V MGND V I
Sbjct: 267 VLLATDETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGI 326
Query: 243 GIVHFKTNDGVVRTLTN-----------------ESLVCKYSAEGGVLMVSKGYLVLLKA 285
G + + +DG LT+ E C + ++ G+L + KG +LK
Sbjct: 327 GSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKG 386
Query: 286 SRIDSLYVLQGIVVTGSAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGID 345
+ D+LY+L G+ G + SS KD T LWH LGHM++KGM +L K+G L ++ I
Sbjct: 387 QKRDTLYILDGVTEEGES--HSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIK 444
Query: 346 KLEFCKHYVFWKQKKVSFSTATHRTKGILDYIHSDLWG-PSKVTSYGGRRYMMTIIDDFP 404
+LEFC+ V+ KQ +VSF+ A H TK L Y+HSDLWG P S G +Y ++ +DD+
Sbjct: 445 ELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYS 504
Query: 405 RKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIAR 464
RKVW+YFLR K+E F F +W+ +VE Q+ + VKKL TDN LE+C+ F +FC GI R
Sbjct: 505 RKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVR 564
Query: 465 HKTIPRNPQQNGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSAL 524
HKT PQQNG+AER+ RT++++ R MLS +G+ + W EAASTA +L+NRSP +A+
Sbjct: 565 HKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGM--EKKFWAEAASTAVYLINRSPSTAI 622
Query: 525 DFKVPEDIWSGNLVDYSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSD 584
+F +PE+ W+G L D S+LR FGC AY + GKL PR+ + IF SY KGY++W +
Sbjct: 623 NFDLPEEKWTGALPDLSSLRKFGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLE 682
Query: 585 PKSQKLILSRDVTFNEDALLSSGK 608
K K ++SR+V F E + K
Sbjct: 683 DK--KCVISRNVIFREQVMFKDLK 704
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana] gi|99721|pir||S05465
retrovirus-related polyprotein - Arabidopsis thaliana
retrotransposon Ta1-3
Length = 1291
Score = 315 bits (806), Expect = 4e-84
Identities = 173/425 (40%), Positives = 248/425 (57%), Gaps = 24/425 (5%)
Query: 197 IRGVKLLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRT 256
+R + +LD+ HM RD F +F +L+G+D K G + +T+ G +
Sbjct: 314 VRDIWVLDSGCTSHMSARRDWFCSFREDGGPTILLGDDHSVKSQGQGSIKIETHGGTIIG 373
Query: 257 LTNESLVCK---------------YSAEGGVLMVS--KGYLVLLKASRIDSLYVLQGIVV 299
L N V + Y EGG V K L+ ++ LY+L G V
Sbjct: 374 LENVKYVPELRRNLISTGTLDKRGYKHEGGDGKVRYFKNQKTALRGELVNGLYILDGNTV 433
Query: 300 TGSAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
V+ K T+LWH LGH+ M +L+ +G + K+ I L+FC++ V K K
Sbjct: 434 LSETCVAEG--SKGKTELWHSRLGHIGLNNMKVLAGKGLVSKEEIRVLDFCENCVMGKAK 491
Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVT-SYGGRRYMMTIIDDFPRKVWVYFLRYKNET 418
KVSF+ H ++ +L Y+H+DLWG + VT S G +Y ++IIDD RKVW+YFLR K+ET
Sbjct: 492 KVSFNVGKHNSEDVLRYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDET 551
Query: 419 FPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVA 478
F F +W+ LVE Q K VK L TDN LEFC+ F+ +C HGI RHKT PQQNGVA
Sbjct: 552 FDRFCEWKELVENQQNKKVKCLRTDNGLEFCNLKFDAYCKEHGIERHKTCTYTPQQNGVA 611
Query: 479 ERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLV 538
ERM RT++E+ RCML+ +GL + W EAA+TA +L+NRSP SA+D VPE++W
Sbjct: 612 ERMNRTIMEKVRCMLNESGL--GEEFWAEAAATAAYLINRSPASAIDHNVPEELWLNKKP 669
Query: 539 DYSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTF 598
Y +LR FG AY ++ GKL PRA++ IF+ Y + +KGY++W + K ++SR+V F
Sbjct: 670 GYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPAGTKGYKIWLLE--EHKCVISRNVLF 727
Query: 599 NEDAL 603
+E+++
Sbjct: 728 HEESV 732
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 314 bits (804), Expect = 6e-84
Identities = 176/420 (41%), Positives = 247/420 (57%), Gaps = 24/420 (5%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
+LDT ++HM R+ F F G V MGN +V +G + K +DG+ LTN
Sbjct: 310 ILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTIVLTNVR 369
Query: 260 ---------------ESLVCKYSAEGGVLMVSKGYLVLLKASRIDSLYVLQGIVVTGSAA 304
E K+ +E G+L + G VLL R D+LY+L V +
Sbjct: 370 YIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLLNWKPVASESL 429
Query: 305 VSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFS 364
+ + + D T LWH L HM++K M +L ++G L K+ + L+ C+ ++ K K+ SFS
Sbjct: 430 --AVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFS 487
Query: 365 TATHRTKGILDYIHSDLWG-PSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFK 423
A H TK L+YIHSDLWG P S G +Y M+IIDDF RKVWVYF++ K+E F F
Sbjct: 488 LAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFV 547
Query: 424 KWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIR 483
+W LVE QT + VK L TDN LEFC+ F+ FC + GI RH+T PQQNGVAERM R
Sbjct: 548 EWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNR 607
Query: 484 TLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNL 543
T++E+ R MLS++GL + W EA T L+N++P SAL+F++P+ WSGN YS L
Sbjct: 608 TIMEKVRSMLSDSGL--PKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPPVYSYL 665
Query: 544 RIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDAL 603
R +GC A+ +DGKL PRA + + + Y KGY++W D +K ++SR++ F E+A+
Sbjct: 666 RRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILD--ERKCVVSRNIIFQENAV 723
>gb|AAP53029.1| putative retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|37532880|ref|NP_920742.1| putative
retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|16905223|gb|AAL31093.1| putative
retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 312 bits (799), Expect = 2e-83
Identities = 182/421 (43%), Positives = 244/421 (57%), Gaps = 67/421 (15%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCG-VVLMGNDVQCKVA*IGIVHFKTNDGVVRTL--- 257
+LDT F +C RD F++ + V G VV MG++ ++ IG V KT+DG+ RTL
Sbjct: 290 ILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDV 349
Query: 258 --------------TNESLVCKYSAEGGVLMVSKGYLV-LLKASRIDSLYVLQGIVVTGS 302
T ++ KYS GGV+ VSKG LV ++ +LYVL+G + GS
Sbjct: 350 RHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGS 409
Query: 303 ---AAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
AAVS P K T LWHM LGHM+E GM L K+ L ++FC+H VF K K
Sbjct: 410 LTAAAVSKDEPSK--TNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHK 467
Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETF 419
+V F+T+ HRTKGILDY+H+DLWGPS+ S GG YM+TIIDD+ RKVW YFL++K++TF
Sbjct: 468 RVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTF 527
Query: 420 PTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAE 479
FK+W++++E Q K VK L TDN EFCS F+++C GI RH TIP PQQN VAE
Sbjct: 528 AAFKEWKVMIERQAEKEVKVLRTDNGGEFCSDAFDDYCRKEGIGRHHTIPYTPQQNSVAE 587
Query: 480 RMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVD 539
RM RT++ +ARCMLSNA + + W EAA+T C+L+NRSP L+ + P ++WSG
Sbjct: 588 RMNRTIISKARCMLSNARM--NKHYWAEAANTTCYLINRSPSILLNKETPIEVWSG---- 641
Query: 540 YSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFN 599
KGY+LW +P++ K + R V FN
Sbjct: 642 -----------------------------------VKGYKLW--NPETNKTFMRRSVVFN 664
Query: 600 E 600
+
Sbjct: 665 K 665
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 308 bits (790), Expect = 3e-82
Identities = 180/427 (42%), Positives = 245/427 (57%), Gaps = 24/427 (5%)
Query: 202 LLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRTLTN-- 259
++DT ++HM R+ F G V MGN KV IG + K G+V LTN
Sbjct: 288 VMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNVR 347
Query: 260 ---------------ESLVCKYSAEGGVLMVSKGYLVLLKASRIDSLYVLQGIVVTGSAA 304
E + E G L + G VLL R +LY+LQ VT +
Sbjct: 348 YIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTEESL 407
Query: 305 VSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQKKVSFS 364
S + ++D T LWH LGHM++K M LL K+G L K+ + KLE C+ ++ K K++ F+
Sbjct: 408 --SVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRIGFN 465
Query: 365 TATHRTKGILDYIHSDLWG-PSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFK 423
A H T+ L+Y+HSDLWG PS S G +Y ++ IDD+ RKV +YFL+ K+E F F
Sbjct: 466 LAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFDKFV 525
Query: 424 KWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIR 483
+W LVE QT K +K L TDN LEFC+ F+EFC+ GI H+T PQQNGVAERM R
Sbjct: 526 EWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNR 585
Query: 484 TLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNL 543
TL+E+ R MLS++GL + W EA T L+N++P SAL+++VP+ WSG YS L
Sbjct: 586 TLMEKVRSMLSDSGL--PKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYSYL 643
Query: 544 RIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNEDAL 603
R FGC A+ +DGKL PRA + I + Y KGY++W + K K ++SR+V F E+A
Sbjct: 644 RRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEEK--KCVVSRNVIFQENAS 701
Query: 604 LSSGKQS 610
QS
Sbjct: 702 YKDMMQS 708
>gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
gi|25301707|pir||E86490 hypothetical protein F28L22.3 -
Arabidopsis thaliana
Length = 1356
Score = 307 bits (787), Expect = 6e-82
Identities = 169/426 (39%), Positives = 247/426 (57%), Gaps = 24/426 (5%)
Query: 196 LIRGVKLLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVR 255
+++ + +LD+ HM RD F +F+ +L+G+D + G + T+ G ++
Sbjct: 303 MVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIK 362
Query: 256 TLTNESLV---------------CKYSAEGGVLMVS--KGYLVLLKASRIDSLYVLQGIV 298
L N V Y EGG V K L+ S + LYVL G
Sbjct: 363 ILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGST 422
Query: 299 VTGSAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQ 358
V + ++ K T LWH LGHM+ + +L+ +G + ++ I++LEFC+H V K
Sbjct: 423 VMSE--LCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKS 480
Query: 359 KKVSFSTATHRTKGILDYIHSDLWGPSKVT-SYGGRRYMMTIIDDFPRKVWVYFLRYKNE 417
KKVSF+ H ++ L Y+H+DLWG VT S G++Y ++IIDD RKVW+YFL+ K+E
Sbjct: 481 KKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDE 540
Query: 418 TFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGV 477
TF F +W+ LVE Q K VK L TDN LEFC+S F+ +C HGI RH+T PQQNGV
Sbjct: 541 TFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGV 600
Query: 478 AERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNL 537
AERM RT++E+ RC+L+ +G+ W EAA+TA +L+NRSP SA++ VPE++W
Sbjct: 601 AERMNRTIMEKVRCLLNKSGV--EEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRK 658
Query: 538 VDYSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVT 597
Y +LR FG AY + GKL PRA++ FL Y + +KGY++W + +K ++SR+V
Sbjct: 659 PGYKHLRKFGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVWLLE--EEKCVISRNVV 716
Query: 598 FNEDAL 603
F E +
Sbjct: 717 FQESVV 722
>emb|CAA37924.1| unnamed protein product [Arabidopsis thaliana] gi|99719|pir||S23319
hypothetical protein 2 - Arabidopsis thaliana
retrotransposon Ta1-2 (strain Landsberg) (fragment)
Length = 1084
Score = 307 bits (787), Expect = 6e-82
Identities = 170/423 (40%), Positives = 245/423 (57%), Gaps = 24/423 (5%)
Query: 197 IRGVKLLDT*YNFHMCPYRDLFTTFEPVDCGVVLMGNDVQCKVA*IGIVHFKTNDGVVRT 256
+R + +LD+ HM +D F F +L+G+D K G + T+ G +
Sbjct: 214 VRDIWVLDSGCTSHMSARKDWFCNFRKDGGTTILLGDDHSVKSQGQGSIKIDTHGGTITV 273
Query: 257 LTNESLVCK---------------YSAEGGVLMVS--KGYLVLLKASRIDSLYVLQGIVV 299
L N V + Y EGG V K L+ ++ LY+L G +
Sbjct: 274 LENVKYVPELRRNLISTGTLDKRGYKHEGGDGKVRYFKNQKTALRGEIVNGLYILDGNTI 333
Query: 300 TGSAAVSSSMPKKDVTKLWHMHLGHMTEKGMHLLSKQGRLGKQGIDKLEFCKHYVFWKQK 359
V+ K T+LWH LGHM M +L+ +G + K+ I +L+FC++ V K K
Sbjct: 334 LSETCVAEG--SKGKTELWHSRLGHMGLNNMKVLAGKGLVSKEEIRELDFCENCVMGKAK 391
Query: 360 KVSFSTATHRTKGILDYIHSDLWGPSKVT-SYGGRRYMMTIIDDFPRKVWVYFLRYKNET 418
KVSF+ H ++ +L Y+H+DLWG + VT S G +Y ++IIDD RKVW+YFLR K+ET
Sbjct: 392 KVSFNMGKHNSEYVLSYVHADLWGSTNVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDET 451
Query: 419 FPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVA 478
F F + + LVE Q K VK L TDN LEFC+ F+ +C +HGI RH T PQQNGVA
Sbjct: 452 FDRFCERKELVENQQNKKVKCLRTDNGLEFCNLKFDAYCKDHGIERHMTCTYTPQQNGVA 511
Query: 479 ERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLV 538
+RM RT++E+ RCML+ +GL + W EAA+TA +L++RSP SA+D VPE++W
Sbjct: 512 DRMNRTIMEKVRCMLNESGL--GEEFWAEAAATAAYLISRSPASAIDHNVPEELWLNKKP 569
Query: 539 DYSNLRIFGCPAYALVNDGKLAPRAVECIFLSYASESKGYRLWCSDPKSQKLILSRDVTF 598
Y +LR FG AY ++ GKL PRA++ IF+ Y S +KGY++W + QK ++SR+V F
Sbjct: 570 GYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPSGTKGYKIWLLE--EQKCVISRNVLF 627
Query: 599 NED 601
+E+
Sbjct: 628 HEE 630
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.331 0.144 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 958,335,726
Number of Sequences: 2540612
Number of extensions: 38365564
Number of successful extensions: 95948
Number of sequences better than 10.0: 1508
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 420
Number of HSP's that attempted gapping in prelim test: 92747
Number of HSP's gapped (non-prelim): 1716
length of query: 610
length of database: 863,360,394
effective HSP length: 134
effective length of query: 476
effective length of database: 522,918,386
effective search space: 248909151736
effective search space used: 248909151736
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 78 (34.7 bits)
Medicago: description of AC149197.1