BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149134.1 - phase: 0
(555 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A96519 protein T2E6.4 [imported] - Arabidopsis thaliana gi|... 322 3e-86
gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [B... 312 2e-83
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 299 2e-79
emb|CAB72467.1| putative protein [Arabidopsis thaliana] gi|11358... 296 2e-78
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 296 2e-78
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 295 3e-78
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 293 8e-78
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 293 1e-77
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 293 1e-77
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 292 2e-77
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 292 2e-77
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 291 3e-77
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 291 4e-77
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 288 4e-76
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 287 5e-76
gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|2540301... 286 1e-75
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 282 2e-74
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 281 3e-74
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 281 5e-74
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 281 5e-74
>pir||A96519 protein T2E6.4 [imported] - Arabidopsis thaliana
gi|9802583|gb|AAF99785.1| T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 322 bits (824), Expect = 3e-86
Identities = 180/520 (34%), Positives = 276/520 (52%), Gaps = 6/520 (1%)
Query: 33 ATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKN 92
AT +LT T EE + +F + S+ PGPD + + FF+ W+I +D A+ FF
Sbjct: 16 ATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIK 75
Query: 93 GWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQ 152
G+LP NA + LIPK A + YR I+ N +K+I+K++A+RL +LP+ I + Q
Sbjct: 76 GFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQ 135
Query: 153 RGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFN 212
FV+ R + + + L +E + S A+KID++KAFD++ W FLL L+ F
Sbjct: 136 SAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFP 195
Query: 213 ELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILA 272
E FC+WIK + ++ + +NG GFF RG+RQG LSP LF I VLS I + A
Sbjct: 196 ENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAA 255
Query: 273 DKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKS 332
I + L CF DDLMVF + S+ + ++F +A SG +++ KS
Sbjct: 256 VHRNIGYHPKCKKLSLTHLCF-ADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKS 314
Query: 333 FIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWK 392
++ G+++ NNI++ F G LP YLG P+ + + P+ DKV++K++ W
Sbjct: 315 TLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWT 374
Query: 393 ASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVA 452
A LS AGR+ L+ SV+ S+ MS Y P +KE+EK F+WSG K +
Sbjct: 375 ARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKIT 434
Query: 453 WRKICADYEEGGLGVKSLICLNEATNLKICWNLM-QSDEQWANIIRSRVIRDHRCMNHHI 511
W +C +EGGLG+KSL+ N+ + LK+ W L+ + W N + + +IR + +
Sbjct: 435 WTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSAND 494
Query: 512 SSSI----WSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
SS+ W + V K C + G +FW D+W
Sbjct: 495 RSSLGSWMWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNW 534
>gb|AAM82604.1| putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 312 bits (799), Expect = 2e-83
Identities = 184/554 (33%), Positives = 292/554 (52%), Gaps = 23/554 (4%)
Query: 10 FFLLTIFLQDHLLVEEAIPKL-------VDATTNRLLTMLPTKEEVKNAVFDLNSDDAPG 62
FF HL+ E I ++ D T +LL ++ ++K+ F L S+ +PG
Sbjct: 406 FFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPG 465
Query: 63 PDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTI 122
PD + + FF+ W+IV + AV +FF++G L +N+ ++ ++PK PNAD + ++R I
Sbjct: 466 PDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPI 525
Query: 123 ALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGG 182
+ N +K+I+K+LA RL ILP IS Q FV+GR + + + L +E + +
Sbjct: 526 SCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISS 585
Query: 183 NLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNC 242
LK+D+ KAFD++ W F++ LK F NWIK + S+ I+++G+ G+F
Sbjct: 586 RGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKG 645
Query: 243 NRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDL---IAASRNNCLPFHCFYVDDLM 299
++G+RQGDPLSP LF I E+LSR + G I + R + L F DDLM
Sbjct: 646 SKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAF----ADDLM 701
Query: 300 VFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLP 359
+F K SSL +KS+ + + SG MN KS ++ G+ DT + + GF G+ P
Sbjct: 702 IFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTL-AFGFVNGTFP 760
Query: 360 FTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSI 419
F YLG P+ K + + + DK+ A+ W LS AGR+QL+ SV+ S + +S
Sbjct: 761 FRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSS 820
Query: 420 YSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNL 479
+ P LK +E+ F+W D+T+R + V+W+ C EGGLG+++ N+ NL
Sbjct: 821 FILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNL 880
Query: 480 KICWNLM-QSDEQW-----ANIIRSRVIRDHRCMNHHISSSIWSGVKAEFHVIKDNCSWI 533
++ W L + D W AN +R + +HH S IW + + K
Sbjct: 881 RLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHH--SWIWKAILGLRPLAKRFLRGA 938
Query: 534 VGDGKQINFWSDSW 547
VG+G+ +++W D W
Sbjct: 939 VGNGQLLSYWYDHW 952
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488323|pir||T02730 RNA-directed DNA
polymerase homolog T9I4.6 - Arabidopsis thaliana
Length = 1529
Score = 299 bits (765), Expect = 2e-79
Identities = 176/519 (33%), Positives = 268/519 (50%), Gaps = 6/519 (1%)
Query: 34 TTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNG 93
T +LT T EE++ +F + ++ +PGPD + + FF+ W++ D A+ FF G
Sbjct: 741 TDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKG 800
Query: 94 WLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQR 153
+LP NA + LIPK A + YR I+ N +K+I+K+LA+RL +LPS I + Q
Sbjct: 801 FLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQS 860
Query: 154 GFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNE 213
FV+ R + + + L +E + +S A+KID++KAFD++ W FLL L+ F E
Sbjct: 861 AFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPE 920
Query: 214 LFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILAD 273
F +WIK + ++ + +NG GFF +RG+RQG LSP LF I VLS I A
Sbjct: 921 TFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAV 980
Query: 274 KGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSF 333
I L CF DDLMVF S+ + ++F +A SG +++ KS
Sbjct: 981 HRNIGYHPKCEKIGLTHLCF-ADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKST 1039
Query: 334 IFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKA 393
I+ G++ + ++ F G LP YLG P+ + + P+ + VK K++ W A
Sbjct: 1040 IYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTA 1099
Query: 394 SLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAW 453
LS AGR+ L+ SV+ S+ MS Y P ++E+EK F+WSG V K +AW
Sbjct: 1100 RSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAW 1159
Query: 454 RKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQ-WANIIRSRVIRDHRCMNHHIS 512
IC +EGGLG+KSL N+ + LK+ W L+ + W I + +IR + +
Sbjct: 1160 SSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANER 1219
Query: 513 SSI----WSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
SS+ W + + K V +G +FW D W
Sbjct: 1220 SSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHW 1258
>emb|CAB72467.1| putative protein [Arabidopsis thaliana] gi|11358077|pir||T47440
hypothetical protein T18B22.50 - Arabidopsis thaliana
Length = 762
Score = 296 bits (757), Expect = 2e-78
Identities = 158/515 (30%), Positives = 268/515 (51%), Gaps = 6/515 (1%)
Query: 38 LLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPN 97
+LT + + EE+K +F + +D +PGPD F + FF+ W I+ + A+ FF G+LP
Sbjct: 1 MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPK 60
Query: 98 NFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQ 157
N+ + LIPK + + YR I+ N +K+I+K+LA+RL +LP I+ Q FV+
Sbjct: 61 GVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120
Query: 158 GRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCN 217
R + + + L ++ + S A+KID++KA D++ W FL+ L F E+F +
Sbjct: 121 DRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIH 180
Query: 218 WIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLI 277
WI+ + + + +NG GFF +RG+RQG LSP LF I +VLS+ + + G I
Sbjct: 181 WIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRI 240
Query: 278 DLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAG 337
+ L H + DDLM+ + S+ + +F ++ SG +++ KS IF+
Sbjct: 241 GYHPHCKRMGLT-HLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSA 299
Query: 338 GITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLS 397
G++ T + F VG LP YLG P+ + + + P+ ++++ ++ W + LS
Sbjct: 300 GLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLS 359
Query: 398 IAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKIC 457
AGR L+ S++ S +S + P ++E+EK +F+WSG K ++W ++C
Sbjct: 360 FAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVC 419
Query: 458 ADYEEGGLGVKSLICLNEATNLKICWNLM-QSDEQWANIIRSRVIRDHRCM----NHHIS 512
EGGLG++SL N+ LK+ W ++ D W + +++ N ++
Sbjct: 420 KPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLG 479
Query: 513 SSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
S IW + V K C VG+G+ +FW D W
Sbjct: 480 SWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDW 514
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 296 bits (757), Expect = 2e-78
Identities = 169/548 (30%), Positives = 284/548 (50%), Gaps = 24/548 (4%)
Query: 23 VEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDV 82
+++ +P + L T EE++ +F + SD +PGPD + + FF+ W I+ +
Sbjct: 433 LQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEF 492
Query: 83 YEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAK 142
AV FF G+LP N+ + LIPK A + YR I+ N +K+I+K++A+RL
Sbjct: 493 TLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKL 552
Query: 143 ILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFL 202
+LP I+ Q FV+ R + + + L +E + + A+KID++KAFD++ W FL
Sbjct: 553 VLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFL 612
Query: 203 LLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEE 262
+ V GF F +WI + ++ + +NG G+F +RG+RQG LSP LF I +
Sbjct: 613 INVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMD 672
Query: 263 VLSRSISILADKGLIDLIAASRN-----NCLPF---HCFYVDDLMVFCKAKMSSLIVLKS 314
VLS+ ++D AA+R+ C H + DDLMV K+ S+ +
Sbjct: 673 VLSK---------MLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIK 723
Query: 315 LFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKG 374
+F +A SG +++ KS ++ G++ T N + + F+ G LP YLG P+ +
Sbjct: 724 VFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLST 783
Query: 375 IHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWI 434
P+ ++V+ ++ W + LS AGR+ L+ SV+ S+ ++ + P K ++E+EK
Sbjct: 784 TDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMC 843
Query: 435 KNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLM-QSDEQWA 493
F+WSG ++W +C +EGGLG++SL N+ LK+ W ++ S+ W
Sbjct: 844 SAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWV 903
Query: 494 NIIRSRVIRDHRC--MNHHIS--SSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW-- 547
+ ++R+ + +S S IW + V K VG+GKQ +FW D+W
Sbjct: 904 KWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSD 963
Query: 548 CGQVLAQT 555
GQ+L +T
Sbjct: 964 LGQLLERT 971
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 295 bits (754), Expect = 3e-78
Identities = 179/543 (32%), Positives = 273/543 (49%), Gaps = 21/543 (3%)
Query: 19 DHLLVEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIV 78
D +V+EAI +V N LT +P EEVK+AVF +N+ APGPD F A F+ YW+I+
Sbjct: 299 DFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHII 358
Query: 79 KKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLAD 138
DV + FF + P N I LIPK V YR IAL N +KI+ K++
Sbjct: 359 STDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTK 418
Query: 139 RLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGG--NLALKIDVTKAFDT 196
R+ ILP +IS+ Q FV GR I D + +T E ++ L S ++A+K D++KA+D
Sbjct: 419 RMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDR 478
Query: 197 LNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLL 256
+ WDFL VL+ FGF+ ++ +W+ + S +NG G RG+RQGDPLSP L
Sbjct: 479 VEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCL 538
Query: 257 FCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLF 316
F + EVLS + + + S N H + DD M F K+ S L +
Sbjct: 539 FILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEIL 598
Query: 317 TRYADCSGQIMNIRKSFI-FAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGI 375
+RY SGQ +N KS + F+ + + IL YLG P G+ K
Sbjct: 599 SRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRD 658
Query: 376 HFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIK 435
F I DK++ K W + LS AG+ ++K+V+ SM +++MS + P + ++++ +
Sbjct: 659 IFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLT 718
Query: 436 NFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQWANI 495
F W RK VAW K+ GGLG + + N++ K+ W L+ S E
Sbjct: 719 RFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPES---- 774
Query: 496 IRSRVIRDHRCMNHHISSSI-----------WSGVKAEFHVIKDNCSWIVGDGKQINFWS 544
+ SR++ C H SS + W + A ++K+ W++ +G++++ W+
Sbjct: 775 LLSRILLGKYC---HSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWN 831
Query: 545 DSW 547
D W
Sbjct: 832 DPW 834
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 293 bits (751), Expect = 8e-78
Identities = 169/509 (33%), Positives = 266/509 (52%), Gaps = 5/509 (0%)
Query: 44 TKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANS 103
T EE++N VFDL + +PGPD F+ +W+++K D+ + + DF +N + N
Sbjct: 240 TMEELRNVVFDLKKNKSPGPDGMPGEFYIHFWDLIKHDLLDLINDFQRNSVNIDRLNFGV 299
Query: 104 IILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRD 163
I LIPKT +A + ++R I L+N FKII KVL +RL + IISK+Q F++ R I +
Sbjct: 300 ITLIPKTKDASQIQKFRPICLLNVSFKIITKVLMNRLNGTMAYIISKQQTAFLKNRFIME 359
Query: 164 CIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTIL 223
+ + E +N + K G L K+D KA+D +NW F+ +LK GF + +C+WI ++
Sbjct: 360 GVVILHEVLNSIHQKKQSGIL-FKVDFEKAYDKVNWVFIYRMLKAKGFPDQWCDWIMKVV 418
Query: 224 HSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAAS 283
K+ + +N FF ++G+RQGDPLSPLLF + E L+ + + LI+ + +
Sbjct: 419 MGGKVAVKVNDQIGSFFKTHKGLRQGDPLSPLLFNLAAEALTLLVQRAEENSLIEGLGTN 478
Query: 284 RNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTR 343
+N + Y DD + K+ LK + + SG +N KS +F G +
Sbjct: 479 GDNKIAI-LQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINFNKSEVFCFGEAKEK 537
Query: 344 MNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQ 403
+ NI VGSLP YLG PI + + ++ +K++ KL W+ L SI GR+
Sbjct: 538 QDLYSNIFTCKVGSLPLKYLGIPIDQKRILNKDWKLAENKMEHKLGCWQGRLQSIGGRLI 597
Query: 404 LVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEG 463
L+ S + S+ ++ +S Y P + + ++ + K F+W D RK V W +C+ ++G
Sbjct: 598 LLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLVCSPRDQG 657
Query: 464 GLGVKSLICLNEATNLKICWNLMQSDEQWANIIRSRVIRDHRCMNHHI---SSSIWSGVK 520
GLGV L +N+A K W L + W II ++ D + SS W GV
Sbjct: 658 GLGVLDLEAMNKAMLGKWIWRLENEEGWWQEIIYAKYCSDKPLSGLRLKAGSSHFWQGVM 717
Query: 521 AEFHVIKDNCSWIVGDGKQINFWSDSWCG 549
C+ IVG+G++ FW DSW G
Sbjct: 718 EVKDDFFSFCTKIVGNGEKTLFWEDSWLG 746
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 293 bits (750), Expect = 1e-77
Identities = 178/532 (33%), Positives = 279/532 (51%), Gaps = 19/532 (3%)
Query: 28 PKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVL 87
P V N LT E+ A+ + D APGPD A F++ W+IV DV + V
Sbjct: 34 PSSVTNIINSELTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVK 93
Query: 88 DFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSI 147
FF++ + + N +I +IPK N ++ YR IAL N +K+I+K + +RL L SI
Sbjct: 94 LFFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSI 153
Query: 148 ISKEQRGFVQGRNIRDCIALTSEAINVLD-----NKSFGGNLALKIDVTKAFDTLNWDFL 202
+S Q F+ GR I D + + E ++ L +K++ +A+K DV+KA+D + WDFL
Sbjct: 154 VSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTY---MAVKTDVSKAYDRVEWDFL 210
Query: 203 LLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEE 262
++ FGF + + WI + S + +NG+ HG+ + RG+RQGDPLSP LF + +
Sbjct: 211 ETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGD 270
Query: 263 VLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADC 322
+LS I + A G I + H + DD + FC+A + + LK +F Y
Sbjct: 271 ILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYY 330
Query: 323 SGQIMNIRKSFIFAG----GITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQ 378
SGQ +N++KS I G G T TR+ ++NI G YLG P G+ K F
Sbjct: 331 SGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGG---KYLGLPEQFGRKKKEMFN 387
Query: 379 PIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFI 438
I D+VK + A W A LS AG+ L+KSV +M V+ MS + P I+ E+E + NF
Sbjct: 388 YIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFW 447
Query: 439 WSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQ-SDEQWANIIR 497
W KR + VAW+++ +EGGLG + L N+A K W ++Q + +A +++
Sbjct: 448 WEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMK 507
Query: 498 SRVIRDHRCMNHHISSSI---WSGVKAEFHVIKDNCSWIVGDGKQINFWSDS 546
+R +D+ ++ S WS + + +++ +++GDGK I D+
Sbjct: 508 ARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDN 559
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 293 bits (749), Expect = 1e-77
Identities = 173/518 (33%), Positives = 275/518 (52%), Gaps = 13/518 (2%)
Query: 47 EVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIIL 106
E+ NA+ + D APGPD A F++ W IV DV + V FF+ ++ + N +I +
Sbjct: 814 EIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICM 873
Query: 107 IPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIA 166
IPK N +++ YR IAL N +KII+K L +RL L +I+S Q F+ GR + D +
Sbjct: 874 IPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVM 933
Query: 167 LTSEAINVLDNKSFGGN--LALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILH 224
+ E ++ L + +A+K DV+KA+D + W+FL ++ FGF+E + WI +
Sbjct: 934 IAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVK 993
Query: 225 SSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASR 284
S + +NG HG RG+RQGDPLSP LF + ++L+ I +G D+
Sbjct: 994 SVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG--DIRGIRI 1051
Query: 285 NNCLP--FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFI-FAGGITD 341
N +P H + DD + FC++ + + LK +F Y SGQ +N+ KS I F +
Sbjct: 1052 GNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHG 1111
Query: 342 TRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGR 401
T N + NILG YLG P G+ K F I ++VK + + W A LS AG+
Sbjct: 1112 TTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGK 1171
Query: 402 IQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYE 461
++KSV SM V+ MS + P+ I+ E+E + NF W + KR++ +AW+++ +
Sbjct: 1172 EIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKK 1231
Query: 462 EGGLGVKSLICLNEATNLKICWNLMQS-DEQWANIIRSRVIRDHRCMN---HHISSSIWS 517
EGGLG + L N+A K W ++ + + +A I+++R R+ ++ S W+
Sbjct: 1232 EGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWT 1291
Query: 518 GVKAEFHVIKDNCSWIVGDGK--QINFWSDSWCGQVLA 553
+ A VIK +IVGDGK +W+ Q+++
Sbjct: 1292 SMLAGLDVIKKGSRFIVGDGKTGSYRYWNAHLISQLVS 1329
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411200|pir||G84473 hypothetical protein
At2g05980 [imported] - Arabidopsis thaliana
Length = 1352
Score = 292 bits (748), Expect = 2e-77
Identities = 163/494 (32%), Positives = 257/494 (51%), Gaps = 6/494 (1%)
Query: 60 APGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQY 119
+PGPD + FF+ W ++ +D+ A+ FF G+LP N + LI K + Y
Sbjct: 617 SPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDY 676
Query: 120 RTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKS 179
R I+ N +KI++K++A+RL +ILP+ I+ Q F++ R + + + L SE + +S
Sbjct: 677 RPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKES 736
Query: 180 FGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGF 239
ALKID++KAFD + W FL+ VLK E+F +WI+ + ++ + +NG GF
Sbjct: 737 ISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGF 796
Query: 240 FNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLM 299
F RG+RQG LSP L+ I VLS + A + I RN L CF DD+M
Sbjct: 797 FRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCF-ADDIM 855
Query: 300 VFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLP 359
VF S+ ++F ++A S +++ KS IF GI+ +I+ F +G+LP
Sbjct: 856 VFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLP 915
Query: 360 FTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSI 419
YLG P+ + + P+ +K++A++ W LS AGR+QL+KSV+ S+ +S+
Sbjct: 916 VKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSV 975
Query: 420 YSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNL 479
+ P L+E+EK F+WSG K +AW ++C EEGGLG+K L NE + L
Sbjct: 976 FRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLL 1035
Query: 480 KICWNLMQS-DEQWANIIRSRVIRDHRCM----NHHISSSIWSGVKAEFHVIKDNCSWIV 534
K+ W ++ + D W + +IR N + S +W + + + V
Sbjct: 1036 KLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEV 1095
Query: 535 GDGKQINFWSDSWC 548
G +FW D WC
Sbjct: 1096 RSGTFTSFWHDHWC 1109
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 292 bits (748), Expect = 2e-77
Identities = 171/503 (33%), Positives = 269/503 (52%), Gaps = 11/503 (2%)
Query: 47 EVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIIL 106
E+ NA+ + D APGPD A F++ W IV DV + V FF+ ++ + N +I +
Sbjct: 794 EIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICM 853
Query: 107 IPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIA 166
IPK N +++ YR IAL N +KII+K L +RL L +I+S Q F+ GR + D +
Sbjct: 854 IPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVM 913
Query: 167 LTSEAINVLDNKSFGGN--LALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILH 224
+ E ++ L + +A+K DV+KA+D + W+FL ++ FGF+E + WI +
Sbjct: 914 IAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVK 973
Query: 225 SSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASR 284
S + +NG HG RG+RQGDPLSP LF + ++L+ I +G D+
Sbjct: 974 SVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG--DIRGIRI 1031
Query: 285 NNCLP--FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFI-FAGGITD 341
N +P H + DD + FC++ + + LK +F Y SGQ +N+ KS I F +
Sbjct: 1032 GNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHG 1091
Query: 342 TRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGR 401
T N + NILG YLG P G+ K F I ++VK + + W A LS AG+
Sbjct: 1092 TTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGK 1151
Query: 402 IQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYE 461
++KSV SM V+ MS + P+ I+ E+E + NF W + KR++ +AW+++ +
Sbjct: 1152 EIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKK 1211
Query: 462 EGGLGVKSLICLNEATNLKICWNLMQS-DEQWANIIRSRVIRDHRCMN---HHISSSIWS 517
EGGLG + L N+A K W ++ + + +A I+++R R+ ++ S W+
Sbjct: 1212 EGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWT 1271
Query: 518 GVKAEFHVIKDNCSWIVGDGKQI 540
+ A VIK +IVGDGK +
Sbjct: 1272 SMLAGLDVIKKGSRFIVGDGKTV 1294
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 291 bits (746), Expect = 3e-77
Identities = 175/508 (34%), Positives = 271/508 (52%), Gaps = 10/508 (1%)
Query: 46 EEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSII 105
EE+ ++ +NS+ APGPD FG F+ WN +K+D+ + F N N I+
Sbjct: 444 EEIITSIKGMNSNSAPGPDGFGPSFYNSAWNSIKEDIIKLAASFCSNSVQLERINRAHIV 503
Query: 106 LIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCI 165
LIPK ++VD YR I+L N KI++KVLA+RL K+L +I +Q GF++GR I + +
Sbjct: 504 LIPKPGKENTVDGYRPISLQNCSVKILSKVLANRLQKVLTRMIHLDQTGFLKGRCISENL 563
Query: 166 ALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHS 225
+E I + L +K+D KAFD++ W L +L GF + +WIK++L +
Sbjct: 564 IYATELIQACHARKC-KTLIIKLDFAKAFDSVLWTSLFQILAVRGFPNNWISWIKSLLQT 622
Query: 226 SKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRN 285
SK + +NG + NC +G+RQGDPLSP LF +V +VL R +L I
Sbjct: 623 SKSAVLLNGIPGKWINCKKGLRQGDPLSPYLFILVADVLQR---LLEKNFQIRHPIYQDR 679
Query: 286 NCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMN 345
C Y DD +V C+A+ ++ L+S +++ +G +N KS + + I ++ +
Sbjct: 680 PCATIQ--YADDTLVICRAEEDDVLALRSTLLQFSKATGLQINFAKSTMISLHIDRSKES 737
Query: 346 NIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLV 405
++ +L + SLP +YLG P+ K QPI KV + L W+ASLLS A R+ LV
Sbjct: 738 SLSELLQCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERLILV 797
Query: 406 KSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVT-KRKMVTVAWRKICADYEEGG 464
+V+ S+ V+ MS + P K+++ ++K + F W+GD T VAW ++C E+GG
Sbjct: 798 NAVLSSVPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCLVAWDEVCTAKEKGG 857
Query: 465 LGVKSLICLNEATNLKICWNLMQSDEQWANIIRSRVIRDHRCMNHHIS-SSIWSGVKAEF 523
LG+KSL NEA LK +NL + W N I D R + + WS +
Sbjct: 858 LGIKSLKTQNEALLLKRLFNLFSDNSSWTNWIWKEF--DGRSLLKSLPLGQHWSVFQKLL 915
Query: 524 HVIKDNCSWIVGDGKQINFWSDSWCGQV 551
+ + +GDG + +FW D W G +
Sbjct: 916 PELFKITTVHIGDGSRTSFWHDRWTGNM 943
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412166|pir||H84629 hypothetical protein
At2g23880 [imported] - Arabidopsis thaliana
Length = 1216
Score = 291 bits (745), Expect = 4e-77
Identities = 166/530 (31%), Positives = 267/530 (50%), Gaps = 6/530 (1%)
Query: 23 VEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDV 82
+E +P +RLLT + T EE+K +F + D +PGPD + + F++ W I+ +V
Sbjct: 154 LENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEV 213
Query: 83 YEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAK 142
A+ FF G+LP N+ + LIPK A + YR I+ N +K I+K+LA+RL +
Sbjct: 214 IIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKR 273
Query: 143 ILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFL 202
ILP I Q FV+ R + + + L +E + S A+KID++KAFD+L W FL
Sbjct: 274 ILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFL 333
Query: 203 LLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEE 262
VL F F +WI + ++ I +NG G+F RG+RQG LSP LF I +
Sbjct: 334 THVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMD 393
Query: 263 VLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADC 322
VLSR + A + L CF DDLM+ K+ S+ + + ++A
Sbjct: 394 VLSRMLDKAAGAREFGYHPRCKTLGLTHLCF-ADDLMILTDGKIRSVDGIVKVLNQFAAK 452
Query: 323 SGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIAD 382
G + + K+ ++ G++D + + F VG LP YLG P+ + + P+ D
Sbjct: 453 LGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLID 512
Query: 383 KVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGD 442
+++ ++ W + LS AGR+ L+ SV+ S+ M+ + P + + E+ + +WSG
Sbjct: 513 QIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGP 572
Query: 443 VTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQ-SDEQWANIIRSRVI 501
K V+W +IC +EGGLG++SL N+ ++LK+ W L+ D W R ++
Sbjct: 573 ELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLL 632
Query: 502 RDHRC----MNHHISSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
+ + + S IW + V K C V +G +FW D+W
Sbjct: 633 KKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNW 682
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana] gi|7488320|pir||T01301
RNA-directed DNA polymerase homolog T14P8.10 -
Arabidopsis thaliana
Length = 657
Score = 288 bits (736), Expect = 4e-76
Identities = 163/503 (32%), Positives = 258/503 (50%), Gaps = 24/503 (4%)
Query: 51 AVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKT 110
A+F + + APGPD F FF W IVK+ A+ +FF G L FNA +I LIPK
Sbjct: 2 ALFSMPRNKAPGPDGFPVEFFLEAWPIVKESFIAAIKEFFLTGHLLKGFNATAITLIPKV 61
Query: 111 PNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSE 170
P AD ++ +R +A +K+I ++++ RL + + Q GF++GR + + + L SE
Sbjct: 62 PGADQLNLFRPVACCTTIYKVITRLISKRLNLFIDQAVQSNQVGFIKGRLLCENVLLASE 121
Query: 171 AINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFI 230
++ + L++D+TKA+D +NW+FL+ +LK +F NWI + + I
Sbjct: 122 LVDNFQAEGDTSRGCLQVDLTKAYDNVNWEFLINILKALNLPPIFINWIWVCISTPSYSI 181
Query: 231 SMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLP- 289
+ NG GFF +G+RQGDP+S LF +V ++L+RS+ + A +G L CL
Sbjct: 182 AYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSLDLGAVEGRFVL----HPKCLAP 237
Query: 290 --FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNI 347
H + DD++VFC +SSL+ + + + SG +N++K+ + G R +
Sbjct: 238 MITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIM 297
Query: 348 VNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKS 407
LG + GSLP YLG P+ K K +QP+ D++ ++ W A LS AGR+QL+KS
Sbjct: 298 AASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKS 357
Query: 408 VVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGV 467
V+ S + SI+ P + L ++E+ F+WSG + ++W +C+ E GGLG+
Sbjct: 358 VIYSTINFWASIFILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGL 417
Query: 468 KSLICLNEATNLKICWNLM-QSDEQWANIIRSRVIRDHRCMNHHISSSIWSGVKAEFHVI 526
K L N+ LK+ W L S W + +R +W + V
Sbjct: 418 KRLSSWNKVLALKLIWLLFTASGSLWVSWVR----------------WVWRKLCKLREVA 461
Query: 527 KDNCSWIVGDGKQINFWSDSWCG 549
+ VG G FW D+W G
Sbjct: 462 RPFVICEVGSGITARFWQDNWTG 484
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana] gi|7488321|pir||T01871
RNA-directed DNA polymerase homolog T24M8.8 -
Arabidopsis thaliana
Length = 1164
Score = 287 bits (735), Expect = 5e-76
Identities = 172/561 (30%), Positives = 283/561 (49%), Gaps = 43/561 (7%)
Query: 16 FLQDHLLVEEAIPKLVDATTNRLLTM---------LPT---KEEVKNAVFDLNSDDAPGP 63
+ Q +L E+ +P A + LL+ L T E++KNA F L + A GP
Sbjct: 305 YFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGP 364
Query: 64 DVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIA 123
D F FF W I+ +V EA+ +FF +G L +NA +++LIPK NA S+ +R I+
Sbjct: 365 DGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPIS 424
Query: 124 LVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGN 183
+N +K+I+K+L DRL LP+ IS Q F+ GR + + L +E ++ + K+ +
Sbjct: 425 CLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPS 484
Query: 184 LALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCN 243
LK+D+ KAFD++ WDF++ L+ E F WI L ++ + +NG G F +
Sbjct: 485 SMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSS 544
Query: 244 RGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCK 303
+G+RQGDP+SP LF + EV S + G I + H + DD+M+F
Sbjct: 545 KGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYI-AYHPKTSQLEISHLMFADDVMIFFD 603
Query: 304 AKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYL 363
K SSL + +A SG +MN K+ ++ G++ + +++ + GF +GSLP YL
Sbjct: 604 GKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMAS-YGFKLGSLPVRYL 662
Query: 364 GAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWP 423
G P+ K + P+ +K+ A+ W LLS AGR+QL+ SV+ ++ +S + P
Sbjct: 663 GLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILP 722
Query: 424 IKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICW 483
+ +K++E F+WS + K+ + VAW ++C EGG+G++ N L++ W
Sbjct: 723 LGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIW 782
Query: 484 NLM-QSDEQWANIIRSRVIRDHRCMNHHISSSIWSGVKAEFHVIKDNCSW---------- 532
L S W + H+ + S+S W+ + D+ +W
Sbjct: 783 LLFSNSGSLW--------VAWHKQHSLGKSTSFWNQPEKP----HDSWNWKCLLRLRVVA 830
Query: 533 ------IVGDGKQINFWSDSW 547
VG+G+ +FW D+W
Sbjct: 831 ERFIRCNVGNGRDASFWFDNW 851
>gb|AAG50806.1| unknown protein [Arabidopsis thaliana] gi|25403016|pir||D86384
unknown protein [imported] - Arabidopsis thaliana
Length = 1213
Score = 286 bits (732), Expect = 1e-75
Identities = 159/521 (30%), Positives = 269/521 (51%), Gaps = 32/521 (6%)
Query: 44 TKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANS 103
+ E+++ A+F L + + GPD F A FF W+IV +V +A+ +FF +G L +NA +
Sbjct: 448 SNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATT 507
Query: 104 IILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRD 163
I+LIPK N +R I+ +N +K+I ++L DRL ++L +IS Q F+ GR++ +
Sbjct: 508 IVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAE 567
Query: 164 CIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTIL 223
+ L ++ ++ + + LK+D+ KAFD++ W+F++ L+ E F NWI +
Sbjct: 568 NVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCI 627
Query: 224 HSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAAS 283
+ +S+NG GFF +G+RQGDPLSP LF + E S + + GLI +
Sbjct: 628 STPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKA 687
Query: 284 RNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTR 343
N + H + DD+M+F SL + +A SG +N KS ++ G+
Sbjct: 688 SNLSIS-HLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLE 746
Query: 344 MNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQ 403
+N GF +G+LP YLG P+ K + ++P+ +K+ A+ W LS AGRIQ
Sbjct: 747 -SNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQ 805
Query: 404 LVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEG 463
L+ SV+ + MS + P +K +E F+WSG++ + K + V+W +C EG
Sbjct: 806 LISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEG 865
Query: 464 GLGVKSLICLNEATNLKICWNL-MQSDEQWANIIRSRVIRDHRCMNHHISSSIWSGVKAE 522
GLG++ L+ N+ ++++ W L + D WA D + ++H S W+ +
Sbjct: 866 GLGLRRLLEWNKTLSMRLIWRLFVAKDSLWA---------DWQHLHHLSRGSFWAVEGGQ 916
Query: 523 FHVIKDNCSW----------------IVGDGKQINFWSDSW 547
D+ +W VG+G + ++W D+W
Sbjct: 917 ----SDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNW 953
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 282 bits (721), Expect = 2e-74
Identities = 170/513 (33%), Positives = 262/513 (50%), Gaps = 9/513 (1%)
Query: 44 TKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANS 103
TK EV +AV + APGPD + F+Q W V V VL+FF+ G LP + N
Sbjct: 293 TKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDAL 352
Query: 104 IILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRD 163
++LI K + + Q+R ++L N FKII K++ RL ++ +I Q F+ GR D
Sbjct: 353 LVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSID 412
Query: 164 CIALTSEAINVLDNKSFG-GNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTI 222
I L EA++ + K G + LK+D+ KA+D + WDFL L+ G +E + + I
Sbjct: 413 NIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAG 472
Query: 223 LHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAA 282
+ M + NG + F RG+RQGDPLSP LF + E L I K IA
Sbjct: 473 VTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAV 532
Query: 283 SRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDT 342
S H + DDL++F +A ++ + +++ + R+ + SGQ +++ KS IF
Sbjct: 533 SCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSR 592
Query: 343 RMNNIVNI-LGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGR 401
M +++ G YLG PI + + F + ++V A+LA WK LS+AGR
Sbjct: 593 EMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGR 652
Query: 402 IQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYE 461
I L K+V+ S+ VH MS P+ L ++++ + F+W + K+K ++WRKIC
Sbjct: 653 ITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKA 712
Query: 462 EGGLGVKSLICLNEATNLKICWNLMQSDEQ-WANIIRSRV----IRDHRCMNHHIS-SSI 515
EGG+G++S +N+A K+ W L+Q E WA ++R + ++D + SS
Sbjct: 713 EGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQPRWSST 772
Query: 516 WSGVKAEF-HVIKDNCSWIVGDGKQINFWSDSW 547
W V V+ W+ GDG I FW D W
Sbjct: 773 WRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRW 805
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 281 bits (720), Expect = 3e-74
Identities = 160/523 (30%), Positives = 269/523 (50%), Gaps = 7/523 (1%)
Query: 32 DATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFK 91
D N +LT T EE+ +A+F + APGPD F A FFQ W ++K+DV E V +FF+
Sbjct: 405 DDEMNGMLTKPFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREFFE 464
Query: 92 NGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKE 151
G N I++IPKT + +R ++L N +K++ K L +RL +L IIS+
Sbjct: 465 TGEWKEGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISET 524
Query: 152 QRGFVQGRNIRDCIALTSEAINVLD--NKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTF 209
Q FV GR I D + E + + + ALK+D++KA+D ++W FL L+
Sbjct: 525 QSAFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKL 584
Query: 210 GFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSIS 269
GF ++ WI + + S + + +NG F RG+R+GDPL+P LF + + LS +
Sbjct: 585 GFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQ 644
Query: 270 ILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNI 329
D+ I + R+ H + DD ++F KA++ +K Y C+GQ++N
Sbjct: 645 RRRDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINP 704
Query: 330 RK-SFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKL 388
++ S +F+ R + I +L LG P G+ K FQPI ++ + +L
Sbjct: 705 KECSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRL 764
Query: 389 AKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKM 448
W LS+AG+ L+KSV Q++ +TM ++ P + +E E+ ++NF W + ++K+
Sbjct: 765 TDWSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKV 824
Query: 449 VTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQS-DEQWANIIRSRVIRDHRCM 507
+AW K+ + GGLG + + C N+A + W L++S D A +++++ +
Sbjct: 825 HWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTIT 884
Query: 508 N---HHISSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
+ +SS W G+ ++K W +GDG + W + W
Sbjct: 885 DTAFPSVSSPTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHW 927
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 281 bits (718), Expect = 5e-74
Identities = 178/531 (33%), Positives = 278/531 (51%), Gaps = 23/531 (4%)
Query: 31 VDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFF 90
V T N LT + E+ +A+ + D APGPD A F++ W+IV DV V FF
Sbjct: 798 VTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFF 857
Query: 91 KNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISK 150
+ ++ + N +I +IPK N ++ YR IAL N +K+I+K L +RL L SI+S
Sbjct: 858 ETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSD 917
Query: 151 EQRGFVQGRNIRDCIALTSEAINVLD-----NKSFGGNLALKIDVTKAFDTLNWDFLLLV 205
Q F+ GR I D + + E ++ L +K++ +A+K DV+KA+D + WDFL
Sbjct: 918 SQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTY---MAVKTDVSKAYDRVEWDFLETT 974
Query: 206 LKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLS 265
++ FGF + WI + S + +NG+ HG+ RG+RQGDPLSP LF + ++LS
Sbjct: 975 MRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILS 1034
Query: 266 RSISILADKGLIDLIAASRNNCLP--FHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCS 323
I+ A G DL N P H + DD + FC+A + + LK +F Y S
Sbjct: 1035 HLINGRASSG--DLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYS 1092
Query: 324 GQIMNIRKSFIFAG----GITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHFQP 379
GQ +N++KS I G G T +R+ I+ I G YLG P G+ K F+
Sbjct: 1093 GQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGG---KYLGLPEQFGRKKKEMFEY 1149
Query: 380 IADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNFIW 439
I D+VK + + W A LS AG+ ++KSV +M V+ MS + P I+ E+E + NF W
Sbjct: 1150 IIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWW 1209
Query: 440 SGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQ-SDEQWANIIRS 498
+R + VAW+++ +EGGLG + L N+A K W L+Q + +A ++++
Sbjct: 1210 EKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKA 1269
Query: 499 RVIRDHRCMNHHI---SSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDS 546
R +D ++ + S W+ + ++K ++GDG+ I D+
Sbjct: 1270 RYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDN 1320
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 281 bits (718), Expect = 5e-74
Identities = 172/534 (32%), Positives = 265/534 (49%), Gaps = 19/534 (3%)
Query: 23 VEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDV 82
++EAI + N EE+K+A F +++D APGPD F A FFQ W V ++
Sbjct: 242 IKEAIKPFISPEQN--------PEEIKSACFSIHADKAPGPDGFSASFFQSNWMTVGPNI 293
Query: 83 YEAVLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAK 142
+ FF + L N I LIPK + + YR IAL +KII+K+L+ RL
Sbjct: 294 VLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQP 353
Query: 143 ILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGN----LALKIDVTKAFDTLN 198
IL IIS+ Q FV R D + +T EA++ L KS G +A+K +++KA+D +
Sbjct: 354 ILQEIISENQSAFVPKRASNDNVLITHEALHYL--KSLGAEKRCFMAVKTNMSKAYDRIE 411
Query: 199 WDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQGDPLSPLLFC 258
WDF+ LV++ GF++ + +WI + + +NG+ G RG+RQGDPLSP LF
Sbjct: 412 WDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFI 471
Query: 259 IVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKMSSLIVLKSLFTR 318
I EVLS G + + S+ N H + DD + FC++ + S + +
Sbjct: 472 ICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKK 531
Query: 319 YADCSGQIMNIRKSFI-FAGGITDTRMNNIVNILGFNVGSLPFTYLGAPIFKGKPKGIHF 377
Y + SGQ++N KS I F+ D ILG + YLG P G+ K F
Sbjct: 532 YEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLF 591
Query: 378 QPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEMEKWIKNF 437
I D+++ + W + LS AG+ ++KSV+ SM +TMS + + + K ++ + +F
Sbjct: 592 NQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHF 651
Query: 438 IWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDE-QWANII 496
W K+KM +AW K+ + +EGGLG K + N+A K+ W ++QS I+
Sbjct: 652 WWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRIL 711
Query: 497 RSRVIRDHR---CMNHHISSSIWSGVKAEFHVIKDNCSWIVGDGKQINFWSDSW 547
+ R C SS W G+ +IK ++G G W++ W
Sbjct: 712 LGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEPW 765
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 930,858,894
Number of Sequences: 2540612
Number of extensions: 38225440
Number of successful extensions: 100221
Number of sequences better than 10.0: 1334
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 494
Number of HSP's that attempted gapping in prelim test: 97471
Number of HSP's gapped (non-prelim): 1588
length of query: 555
length of database: 863,360,394
effective HSP length: 133
effective length of query: 422
effective length of database: 525,458,998
effective search space: 221743697156
effective search space used: 221743697156
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)
Medicago: description of AC149134.1