BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149130.9 + phase: 0 /pseudo
(1214 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 535 e-150
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 521 e-146
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 471 e-131
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 469 e-130
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 467 e-130
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 466 e-129
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 466 e-129
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 464 e-129
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 456 e-126
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 453 e-125
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 442 e-122
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 435 e-120
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 432 e-119
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 432 e-119
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 425 e-117
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 418 e-115
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 408 e-112
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 407 e-111
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 407 e-111
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 400 e-109
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 535 bits (1378), Expect = e-150
Identities = 303/821 (36%), Positives = 456/821 (54%), Gaps = 53/821 (6%)
Query: 5 ITGPWMLIGDFNETHLPSEQRGGTFHHNR-AATFSNFMNNCNLLDLTTTGGRFTWHKNNN 63
+ GP ++ GDFN E+ GG + + F +++N +L+DL G +FTW +
Sbjct: 29 LEGPLLIGGDFNTILWVDERMGGNGRLSPDSLAFGDWINELSLIDLGFKGNKFTWRRGRQ 88
Query: 64 GIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEA 123
+++K+LDR RL + EA V L + SDH PL ++ L +
Sbjct: 89 ESTVVAKRLDRVFVCAHARLKWQEAVVSHLPFMASDHAPLYVQLEPLQQRK--------- 139
Query: 124 AWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQ 183
R W N +VFG+I RK ++ +K VQ
Sbjct: 140 ------------LRKW---------------------NREVFGDIHVRKEKLVADIKEVQ 166
Query: 184 SYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRR 243
L V S E+ L E + +L QEE LW+QKSRE++++LGD+NT FFH T+IRR
Sbjct: 167 DLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLWFQKSREKYIELGDRNTTFFHTSTIIRR 226
Query: 244 KWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSR-FFNEGRHPALDDTGKT 302
+ N+I L+ + +D L+ AL Y+K+ + + R G ++ + K
Sbjct: 227 RRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLEDVSEVRNMLPTGGFASISEAEKA 286
Query: 303 SLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDP 362
+L TK EV +A+ SM +KAPGPDG+ +F++Q W VG V V F TG
Sbjct: 287 ALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPA 346
Query: 363 AISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLP 422
+ ++ L+ LI K+ P + FRP+SLCN L+KIITK++V RL+ ++ LIGP Q+SF+P
Sbjct: 347 STNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIP 406
Query: 423 GRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIV 482
GR + DN +++QE +H M+R K +KG++ KLDLEKA+D V WDFL L G +
Sbjct: 407 GRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWT 466
Query: 483 KLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGS 542
IM V+ + S+LWNG + F P GLRQGDPLSPYLF+LC+E+L I+ +V +
Sbjct: 467 SRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKRE 526
Query: 543 WEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYY 602
W+PI + G ++SH+ FADD++LF +A +Q++ I + +RF ASG K+++ KS+ ++
Sbjct: 527 WKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFF 586
Query: 603 SSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRL 662
S ++ SGI T LGKYLG P+LQ R + F +LE++ RLA WK R
Sbjct: 587 SHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRS 646
Query: 663 LNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS-NNKGIHLVNWKT 721
L+ GR+TL +VLS+IP + M LP + D++D+ +R FLW + K HL++W+
Sbjct: 647 LSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRK 706
Query: 722 ITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSG----TSLLEAN 777
I +PK+ GG+G+RSARD N L+ K+ W ++Q LW ++ KKY G TS L+
Sbjct: 707 ICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQ 766
Query: 778 VNSNSSPSWFSI-IRAKDILKTGYSWRAGAG-TSSFWFSNW 816
+S +W S+ + ++++ G W G G T FW W
Sbjct: 767 PRWSS--TWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRW 805
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 521 bits (1342), Expect = e-146
Identities = 283/718 (39%), Positives = 418/718 (57%), Gaps = 38/718 (5%)
Query: 53 GGRFTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPL 112
G RFTW + ++K+LDR + RL + EA +LC + +
Sbjct: 5 GNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEA---LLCPAQN-------------V 48
Query: 113 TRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRK 172
RPFRFEAAW+ H + ++ SW T P A L ++ +N +VFGNI RK
Sbjct: 49 DARRRPFRFEAAWLSHEGFKELLTASWDTGLSTPVA-LNRLRWQLKKWNKEVFGNIHVRK 107
Query: 173 SRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNT 232
+V LK VQ LE V + + E L E++ +L QEE LW+QKSRE+ + LGD+NT
Sbjct: 108 EKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALGDRNT 167
Query: 233 AFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSR--FFNE 290
FFH TVIRR+ N+I L+ ++ L++ A+ Y++K + + R E
Sbjct: 168 TFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRGTLPTE 227
Query: 291 GRHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHL 350
G P L K +L P T+ EV A+ SM +KAPGPDG+ +F++Q W VG+ V
Sbjct: 228 G-FPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESVSKF 286
Query: 351 VRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLN 410
V F +G + ++ L+ L+ K+ P FRP+SLCN L+KIITK++V RL+ ++
Sbjct: 287 VMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVIS 346
Query: 411 NLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNS 470
LIGP Q+SF+PGR + DN +++QE +H M+R K +KG++ KLDLEKA+D + WDFL
Sbjct: 347 KLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAE 406
Query: 471 CLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKL 530
L G + +K IM CV+ SLLWNG K F P GLRQGDP+SPYLF+LC+E+L
Sbjct: 407 TLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERL 466
Query: 531 SVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASG 590
I+ AV +G W+ I I GP++SH+ FADD++LF +A +Q
Sbjct: 467 CHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASVAQ---------------- 510
Query: 591 LKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEK 650
K+++ KS+ ++S+ +TA +GI ST LGKYLG P+LQ R + F +LE+
Sbjct: 511 -KVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLER 569
Query: 651 MQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS- 709
+ +RL+ WK+R L+ GR+TL +VL +IP + M LP ++ + +D+ +RNFLW +
Sbjct: 570 VSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTV 629
Query: 710 NNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKY 767
+ HL++WK + RPK+ GGLG+R+++D N LL K+ W ++ LW +L +KY
Sbjct: 630 EKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKY 687
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 471 bits (1213), Expect = e-131
Identities = 275/821 (33%), Positives = 420/821 (50%), Gaps = 19/821 (2%)
Query: 6 TGPWMLIGDFNETHLPSEQRGGTFHHNRAAT-FSNFMNNCNLLDLTTTGGRFTWHKNNNG 64
+GPWML GDFNE PSE+ GG + F +N+C L ++ +G +F+W+ N N
Sbjct: 128 SGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRND 187
Query: 65 IRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAA 124
++ +LDR +AN W FP+A L ++ SDH+PL+ G R F+++
Sbjct: 188 -ELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVG-DNWRKWAGFKYDKR 245
Query: 125 WIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQS 184
W+ + +++ WS + A + ME ++ K R++ +Q
Sbjct: 246 WVQREGFKDLLCNFWSQQSTKTNALM---MEKIASCRREISKWKRVSKPSSAVRIQELQF 302
Query: 185 YLERV------DSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQ 238
L+ D L+KEL EYN+ EE W +KSR W++ GD+NT +FHA
Sbjct: 303 KLDAATKQIPFDRRELARLKKELSQEYNN----EEQFWQEKSRIMWMRNGDRNTKYFHAA 358
Query: 239 TVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDD 298
T RR N+I KL G + L A YFKK F + Y+ E P + D
Sbjct: 359 TKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPLVSD 418
Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
+L +PITK+EV A S+ P+K PGPDG + ++Q+W +GD + +V++ F +G
Sbjct: 419 QMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSG 478
Query: 359 HFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQS 418
+ ++ T I LIPKI DFRPISLCN +YK+I K++ +RL+ L +LI Q+
Sbjct: 479 SIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQA 538
Query: 419 SFLPGRGTADNSIILQEILHFM-KRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGF 477
+F+ GR +DN +I E+LH + +K + ++A K D+ KA+D V W FL + GF
Sbjct: 539 AFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGF 598
Query: 478 PDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDA 537
D ++LIM CV S Y +L NG P+ GLRQGDPLSPYLF++C E L +Q A
Sbjct: 599 ADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSA 658
Query: 538 VLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISK 597
+ + + P ISHLLFADD + + K L I + + +S ASG ++N K
Sbjct: 659 EQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLK 718
Query: 598 SRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLAS 657
S Y+ + + GI+ G YLG P K + +++ +++ ++
Sbjct: 719 SSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLG 778
Query: 658 WKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKG-SNNKGIHL 716
W++ L+ G+ L +V +PTY M +P+ IC I+ F WK +G+H
Sbjct: 779 WQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHW 838
Query: 717 VNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEA 776
W ++RPK++GGLG + NI LLGK +W M+ + L + +Y S + L A
Sbjct: 839 KAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNA 898
Query: 777 NVNSNSSPSWFSIIRAKDILKTGYSWRAGAG-TSSFWFSNW 816
+ S S +W SI A+ ++K G G G T + W W
Sbjct: 899 PLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPW 939
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 469 bits (1207), Expect = e-130
Identities = 291/829 (35%), Positives = 433/829 (52%), Gaps = 20/829 (2%)
Query: 1 INDTITGPWMLIGDFNETHLPSEQRGGTFHHNRAAT-FSNFMNNCNLLDLTTTGGRFTW- 58
++ T PW+LIGDFNE +E+ GG F N ++ C+L D+ + G RF+W
Sbjct: 504 LSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWV 563
Query: 59 -HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPR 117
++++ ++ LDR N + FP A +E L SDH PL L TR R
Sbjct: 564 GERHSHTVKCC---LDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTE-TRKMR 619
Query: 118 PFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASL---IKVMENSII-FNHDVFGNIFQRKS 173
PFRF+ ++ + VK W+ + L ++ ++ H N R +
Sbjct: 620 PFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRIN 679
Query: 174 RVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTA 233
+++ L S + R + + +++EL Y EE W QKSR QW+K GD+NT
Sbjct: 680 QLQAALDKAMSSVNRTERRTISHIQRELTVAYR----DEERYWQQKSRNQWMKEGDRNTE 735
Query: 234 FFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRH 293
FFHA T R N++ ++ G+ + A ++F K + + P S G
Sbjct: 736 FFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFK 795
Query: 294 PALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS 353
P + + LT ++ E++ A+ + KAPGPDG F+K W IVG DV V+
Sbjct: 796 PIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKI 855
Query: 354 AFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLI 413
F T + +I++T I +IPKI +P T D+RPI+LCN LYKII+K LV RL+ L+ ++
Sbjct: 856 FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 915
Query: 414 GPYQSSFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCL 472
Q++F+PGR DN +I E++H +K KR + Y+A K D+ KA+D V W+FL + +
Sbjct: 916 SDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTM 975
Query: 473 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 532
FGF + +K IM V S NYS+L NG +P G+RQGDPLSPYLFILC + L+
Sbjct: 976 RLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNH 1035
Query: 533 AIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLK 592
I++ V +G I I N P ++HL FADD L F ++ Q + ++FD + SG K
Sbjct: 1036 LIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQK 1095
Query: 593 INISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQ 652
IN+SKS + S N L I GIQS GKYLG P GR KR FN+I+E+++
Sbjct: 1096 INMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVK 1155
Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNN 711
R +SW + L+ G+ + SV ++P Y M LP NI I+ NF W K +
Sbjct: 1156 KRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKK 1215
Query: 712 KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGT 771
+ I + WK + K GGLG R N LL K VW M+ + N L+ ++ +Y
Sbjct: 1216 REIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFRED 1275
Query: 772 SLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG-TSSFWFSNWSSH 819
S+L+A S W S++ D++K G + G G T S+ + W++H
Sbjct: 1276 SILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTGSYRY--WNAH 1322
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 467 bits (1202), Expect = e-130
Identities = 285/816 (34%), Positives = 415/816 (49%), Gaps = 17/816 (2%)
Query: 1 INDTITGPWMLIGDFNETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTW- 58
I+D W+L+GDFNE +E+ GG F N +++C++ D+ + G RF+W
Sbjct: 504 ISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWV 563
Query: 59 -HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPR 117
++ + ++ LDR N W +FP A +E L SDH P+L+ F R +
Sbjct: 564 GERHTHTVKCC---LDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNE-SFPRRSK 619
Query: 118 PFRFEAAWIDHYDYGNVVKRSWSTHTHN---PTASLIKVMENSII-FNHDVFGNIFQRKS 173
FRF+ ID + +V+ SW T+ ++ P I ++ H N QR
Sbjct: 620 LFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIK 679
Query: 174 RVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTA 233
+++ L RVD L +LQ+ EE+ W QKSR QW+K GD+NT
Sbjct: 680 KLQSSLNRAMESTRRVDRQ----LIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTG 735
Query: 234 FFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRH 293
+FHA T R N+++ + G + + A +F F + I S
Sbjct: 736 YFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFK 795
Query: 294 PALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS 353
+ +T LT + E++ A+ + KAPGPDG F+K W IVG DV V+
Sbjct: 796 STVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKK 855
Query: 354 AFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLI 413
F T P+I++T I +IPKI +P T D+RPI+LCN LYK+I+K LV+RL+ LN+++
Sbjct: 856 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 915
Query: 414 GPYQSSFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCL 472
Q++F+PGR DN +I E++H +K KR K Y+A K D+ KA+D V WDFL + +
Sbjct: 916 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 975
Query: 473 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 532
FGF + + IM V S +YS+L NG+ PT G+RQGDPLSPYLFILC + LS
Sbjct: 976 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 1035
Query: 533 AIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLK 592
I G + I N P I+HL FADD L F +A Q + ++FD + SG K
Sbjct: 1036 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 1095
Query: 593 INISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQ 652
IN+ KS + S + L I I + GKYLG P GR K+ F +I+++++
Sbjct: 1096 INVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 1155
Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNN 711
R ++W R L+ G+ + SV +P Y M LP+ I I+ NF W K SN
Sbjct: 1156 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 1215
Query: 712 KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGT 771
+GI V WK + K GGLG R N LL K W ++Q N L+ ++ +Y
Sbjct: 1216 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDV 1275
Query: 772 SLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG 807
S+L+A V S W S++ +LK G G G
Sbjct: 1276 SILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDG 1311
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 466 bits (1199), Expect = e-129
Identities = 285/816 (34%), Positives = 414/816 (49%), Gaps = 17/816 (2%)
Query: 1 INDTITGPWMLIGDFNETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTW- 58
I+D W+L+GDFNE +E+ GG F N +++C++ D+ + G RF+W
Sbjct: 278 ISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWV 337
Query: 59 -HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPR 117
++ + ++ LDR N W +FP A E L SDH P+L+ F R +
Sbjct: 338 GERHTHTVKCC---LDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVHFNE-SFPRRSK 393
Query: 118 PFRFEAAWIDHYDYGNVVKRSWSTHTHN---PTASLIKVMENSII-FNHDVFGNIFQRKS 173
FRF+ ID + +V+ SW T+ ++ P I ++ H N QR
Sbjct: 394 LFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIK 453
Query: 174 RVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTA 233
+++ L RVD L +LQ+ EE+ W QKSR QW+K GD+NT
Sbjct: 454 KLQSSLNRAMESTRRVDRQ----LIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTG 509
Query: 234 FFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRH 293
+FHA T R N+++ + G + + A +F F + I S
Sbjct: 510 YFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFK 569
Query: 294 PALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS 353
+ +T LT + E++ A+ + KAPGPDG F+K W IVG DV V+
Sbjct: 570 STVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKK 629
Query: 354 AFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLI 413
F T P+I++T I +IPKI +P T D+RPI+LCN LYK+I+K LV+RL+ LN+++
Sbjct: 630 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 689
Query: 414 GPYQSSFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCL 472
Q++F+PGR DN +I E++H +K KR K Y+A K D+ KA+D V WDFL + +
Sbjct: 690 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 749
Query: 473 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 532
FGF + + IM V S +YS+L NG+ PT G+RQGDPLSPYLFILC + LS
Sbjct: 750 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 809
Query: 533 AIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLK 592
I G + I N P I+HL FADD L F +A Q + ++FD + SG K
Sbjct: 810 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 869
Query: 593 INISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQ 652
IN+ KS + S + L I I + GKYLG P GR K+ F +I+++++
Sbjct: 870 INVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 929
Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNN 711
R ++W R L+ G+ + SV +P Y M LP+ I I+ NF W K SN
Sbjct: 930 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 989
Query: 712 KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGT 771
+GI V WK + K GGLG R N LL K W ++Q N L+ ++ +Y
Sbjct: 990 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDV 1049
Query: 772 SLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG 807
S+L+A V S W S++ +LK G G G
Sbjct: 1050 SILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDG 1085
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 466 bits (1199), Expect = e-129
Identities = 287/816 (35%), Positives = 425/816 (51%), Gaps = 17/816 (2%)
Query: 1 INDTITGPWMLIGDFNETHLPSEQRGGTFHHNRAAT-FSNFMNNCNLLDLTTTGGRFTW- 58
++ T PW+LIGDFNE +E+ GG F N ++ C+L D+ + G RF+W
Sbjct: 484 LSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWV 543
Query: 59 -HKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPR 117
++++ ++ LDR N + FP A +E L SDH PL L TR R
Sbjct: 544 GERHSHTVKCC---LDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTE-TRKMR 599
Query: 118 PFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASL---IKVMENSII-FNHDVFGNIFQRKS 173
PFRF+ ++ + VK W+ + L ++ ++ H N R +
Sbjct: 600 PFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRIN 659
Query: 174 RVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTA 233
+++ L S + R + + +++EL Y EE W QKSR QW+K GD+NT
Sbjct: 660 QLQAALDKAMSSVNRTERRTISHIQRELTVAYR----DEERYWQQKSRNQWMKEGDRNTE 715
Query: 234 FFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRH 293
FFHA T R N++ ++ G+ + A ++F K + + P S G
Sbjct: 716 FFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFK 775
Query: 294 PALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS 353
P + + LT ++ E++ A+ + KAPGPDG F+K W IVG DV V+
Sbjct: 776 PIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKI 835
Query: 354 AFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLI 413
F T + +I++T I +IPKI +P T D+RPI+LCN LYKII+K LV RL+ L+ ++
Sbjct: 836 FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 895
Query: 414 GPYQSSFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCL 472
Q++F+PGR DN +I E++H +K KR + Y+A K D+ KA+D V W+FL + +
Sbjct: 896 SDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTM 955
Query: 473 LDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 532
FGF + +K IM V S NYS+L NG +P G+RQGDPLSPYLFILC + L+
Sbjct: 956 RLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNH 1015
Query: 533 AIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLK 592
I++ V +G I I N P ++HL FADD L F ++ Q + ++FD + SG K
Sbjct: 1016 LIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQK 1075
Query: 593 INISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQ 652
IN+SKS + S N L I GIQS GKYLG P GR KR FN+I+E+++
Sbjct: 1076 INMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVK 1135
Query: 653 TRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLW-KGSNN 711
R +SW + L+ G+ + SV ++P Y M LP NI I+ NF W K +
Sbjct: 1136 KRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKK 1195
Query: 712 KGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGT 771
+ I + WK + K GGLG R N LL K VW M+ + N L+ ++ +Y
Sbjct: 1196 REIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFRED 1255
Query: 772 SLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG 807
S+L+A S W S++ D++K G + G G
Sbjct: 1256 SILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDG 1291
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 464 bits (1195), Expect = e-129
Identities = 281/828 (33%), Positives = 432/828 (51%), Gaps = 34/828 (4%)
Query: 8 PWMLIGDFNET-----HLPSEQRGGTFHHNRAATFSNFMNNCNLLDLTTTGGRFTWHKNN 62
PWM+IGDFNET H R T N F + + +C+L DL G T+
Sbjct: 767 PWMVIGDFNETLWQFEHFSKNPRCETQMQN----FRDALYDCDLQDLGFKGVPHTYDNRR 822
Query: 63 NGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRP--FR 120
+G R + +LDR +A+ WR FPEA V L SDH+P+LL F TR PR
Sbjct: 823 DGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTR-PRQKCLH 881
Query: 121 FEAAWIDHYDYGNVVKRSW-----STHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRV 175
+E W + V++ +W T + +L +VM ++ N+ + +
Sbjct: 882 YEIVWEREPESVQVIEEAWINAGVKTDLGDINIALGRVMSALRSWSKTKVKNVGKELEKA 941
Query: 176 EWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFF 235
+L+ + + S R + D N +L++EEMLW Q+SR W+K GD+NT FF
Sbjct: 942 RKKLEDLIASNAARSSIR------QATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTRFF 995
Query: 236 HAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCG--SQIPYS--RFFNEG 291
H++ V R K NKI KL+ NG S +++L+ A +YF+ + S P S R F E
Sbjct: 996 HSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRLFQEK 1055
Query: 292 RHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLV 351
A+++ L ++E+ A+ + P K+P PDGF F+++ W + D+ V
Sbjct: 1056 VTDAMNE----KLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILAV 1111
Query: 352 RSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNN 411
R+ F +G +++T I LIPK D P KD+RPISLCN +YK+++K LV+RLRP L++
Sbjct: 1112 RNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDD 1171
Query: 412 LIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYV-AFKLDLEKAFDNVNWDFLNS 470
L+ QS+F+ GR DN+++ E H ++++K+ A+KLDL KA+D V+W FL
Sbjct: 1172 LVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLEL 1231
Query: 471 CLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKL 530
L GF V IM CV++ YS+ +NG + F PT GLRQG+PLSP+LF+ + L
Sbjct: 1232 ALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGL 1291
Query: 531 SVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASG 590
S+ +++ V Q S P+ I P IS+LLFADD LLF KA+ + + + + +++ +G
Sbjct: 1292 SLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTG 1351
Query: 591 LKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEK 650
IN +K + +P+ ++ ++ +YLGFP +GR + F + K
Sbjct: 1352 QLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAK 1411
Query: 651 MQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSN 710
+ R+ W L+ G+ L +V+ IP Y M + P ++ D + + RNF W N
Sbjct: 1412 IAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADN 1471
Query: 711 -NKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSS 769
+ H W ++T+ K GGLG R + N LL + W +++ N L +L KY
Sbjct: 1472 GRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYFP 1531
Query: 770 GTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTS-SFWFSNW 816
SL + ++N+SP+W I D+LK G WR G G S W W
Sbjct: 1532 HGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRDPW 1579
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 456 bits (1174), Expect = e-126
Identities = 278/816 (34%), Positives = 413/816 (50%), Gaps = 20/816 (2%)
Query: 9 WMLIGDFNETHLPSEQRGGTFH-HNRAATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRI 67
W+L GDFN+ SE++GG F +F++ L D+ TG +W +
Sbjct: 75 WLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSW-RGTRYSHF 133
Query: 68 LSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAAWID 127
+ +LDR + N W FP + E L SDH PL+ FG PL R +PFRF+ +
Sbjct: 134 IKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYFGAPPLKRS-KPFRFDRRLRE 192
Query: 128 HYDYGNVVKRSWSTHTHNPTASLIKVMENSII-FNHDVFGNIFQRKSRVEWRLKGVQSYL 186
+ +VK W + I SII + + N + + + L+ S
Sbjct: 193 KEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQALESALS-A 251
Query: 187 ERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWN 246
+ D + +EL+ Y QEE+ W Q SR QW+ GD+N +FHA T RR N
Sbjct: 252 DIPDPSLIGSITQELEAAYR----QEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLN 307
Query: 247 KIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKTSLTS 306
+ ++ +G + + YF+ F S + E P + L
Sbjct: 308 NLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIK 367
Query: 307 PITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISN 366
+ E+ AL S+ KAPGPDGF FF YW I+ DV +RS F+ P ++
Sbjct: 368 ISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNE 427
Query: 367 TLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGT 426
T + LIPKI +P D+RPI+LCN YKI+ K+L RL+P+L+ LI +QS+F+PGR
Sbjct: 428 THVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAI 487
Query: 427 ADNSIILQEILHFMKRSKRKKGY-VAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLI 485
ADN +I EILHF++ S KK +A K D+ KA+D + W+FL L+ GF D ++ +
Sbjct: 488 ADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWV 547
Query: 486 MHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEP 545
M CV + +YS L NG+ P+ GLRQGDPLSPYLFILC E LS + A +G
Sbjct: 548 MQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVG 607
Query: 546 IHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSG 605
I + PQ++HLLFADD + F K + ++N+ ++ ASG IN++KS +SS
Sbjct: 608 IRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSK 667
Query: 606 TPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNR 665
TP + I + +GKYLG P GR KR F+ I+++++ R SW R L+
Sbjct: 668 TPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSS 727
Query: 666 TGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSNNK-GIHLVNWKTITR 724
G+ L +VLS++P+Y M LP ++C I F W +K + V+W +T
Sbjct: 728 AGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTL 787
Query: 725 PKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVN-SNSS 783
P + GGLG R + KL W +++ + L +L KY + +S ++ + + S +S
Sbjct: 788 PINEGGLGFRE-------IEAKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFAS 840
Query: 784 PSWFSIIRAKDILKTGYSWRAGAGTS-SFWFSNWSS 818
W I+ +D+L+ G W G G S + W W S
Sbjct: 841 HGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLS 876
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 453 bits (1165), Expect = e-125
Identities = 274/834 (32%), Positives = 416/834 (49%), Gaps = 32/834 (3%)
Query: 1 INDTITGPWMLIGDFNET-----HLPSEQRGGTFHHNRAATFSNFMNNCNLLDLTTTGGR 55
I+ + + PW +IGDFNET H RG + F + + +C L DL G
Sbjct: 854 IHQSSSLPWAVIGDFNETMWQFEHFSRTPRG----EPQMQDFRDVLQDCELHDLGFKGVP 909
Query: 56 FTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRG 115
T+ G R + +LDR +A+ WR + A V L SDH P+LL + +
Sbjct: 910 HTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNL----VVKD 965
Query: 116 PRPFR-----FEAAWIDHYDYGNVVKRSW-----STHTHNPTASLIKVMENSIIFNHDVF 165
P R +E W + V++ +W + +L KVM ++
Sbjct: 966 PHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKALAKVMTALRSWSRAKV 1025
Query: 166 GNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWV 225
N+ + + +L E ++S + + D N +L++EEMLW Q+SR W+
Sbjct: 1026 KNVGRELEKARKKLA------ELIESNADRTVIRNATDHMNELLYREEMLWLQRSRVNWL 1079
Query: 226 KLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYS 285
K D+NT FFH++ V R K NKI KL+ N S + L+ A +YF+ +
Sbjct: 1080 KDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNP 1139
Query: 286 RFFNEGRHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGD 345
+ D L T+ E+ A+ + P K+PGPDGF F+++ W +
Sbjct: 1140 ETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKA 1199
Query: 346 DVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRL 405
D+ VR F TG +++T I LIPK + P +DFRPISLCN +YK+++K LV+RL
Sbjct: 1200 DIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRL 1259
Query: 406 RPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKK-GYVAFKLDLEKAFDNVN 464
RP L++L+ QS+F+ GR DN+++ E H M+++K+ A+KLDL KA+D V+
Sbjct: 1260 RPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVD 1319
Query: 465 WDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFI 524
W FL + GF V IM CV+S Y + +NG + F PT GLRQGDPL P+LF+
Sbjct: 1320 WRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFL 1379
Query: 525 LCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDR 584
+ LS+ +++ V Q S P + P ISHLLFADD LLF KA + + + +
Sbjct: 1380 FVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSS 1439
Query: 585 FSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDF 644
++ +G IN +K + ++ I ++ +YLGFP +GR + F
Sbjct: 1440 YAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRF 1499
Query: 645 NFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNF 704
+ K+ R+ W L+ G+ L +V+ IP Y M I LP+++ D + + +NF
Sbjct: 1500 QSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNF 1559
Query: 705 LWKGSN-NKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLL 763
W N + H W ++T+PKS+GGLG R R N LL + W ++ + L +L
Sbjct: 1560 WWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVL 1619
Query: 764 AKKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTS-SFWFSNW 816
KY SL++ + SNSSP+W SI D+LK G WR G G S W +W
Sbjct: 1620 KAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSW 1673
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 442 bits (1136), Expect = e-122
Identities = 260/837 (31%), Positives = 424/837 (50%), Gaps = 32/837 (3%)
Query: 1 INDTITGPWMLIGDFNET-----HLPSEQRGGTFHHNRAATFSNFMNNCNLLDLTTTGGR 55
++D GPW+ GDFNE HL +R + F + +++C L+DL G +
Sbjct: 129 LHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQH----FRSCLDDCGLIDLGFVGPK 184
Query: 56 FTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGG------ 109
FTW + +LDR +AN ++ F + VE + SDH + +
Sbjct: 185 FTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQR 244
Query: 110 -LPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTA--SLIKVMENSIIFNHD--- 163
+P+ +G FRFEAAW+ DY VV+ SW + + V++ + D
Sbjct: 245 RIPIQQG---FRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSK 301
Query: 164 -VFGNIFQRKSRVEWRLKGV-QSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSR 221
FG++ ++ ++E +LK + QS + V L+E++L + + +EE++ Q+SR
Sbjct: 302 ASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFE----KEEIMARQRSR 357
Query: 222 EQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQ 281
W++ GD+NTAFFHA+ RR+ N+I +L +G ++ A +++ F
Sbjct: 358 VDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEP 417
Query: 282 IPYSRFFNEGRHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWH 341
+ + D L T +E+ AL M KAPGPDGF +F++ +W
Sbjct: 418 CDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWG 477
Query: 342 IVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVL 401
I+ + + + VR L + ++++ LIPK+++ + FRPISLCN LYKI +KVL
Sbjct: 478 ILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVL 537
Query: 402 VHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKRSKRKKGYVAFKLDLEKAFD 461
+RL+PFL +++ +QS+F+PGR D++++ E LH +++ K + A K+D+ KA+D
Sbjct: 538 ANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAYD 597
Query: 462 NVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPY 521
V W +L+ CL GF + +M CVSS Y++ NG P P+ G+RQGDP+SPY
Sbjct: 598 RVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPY 657
Query: 522 LFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNL 581
LF+LC E LS + + G + I GP ISHLLFADD + F KA S +Q + N
Sbjct: 658 LFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNT 717
Query: 582 FDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKR 641
+ ASG KIN+ KS ++ P+ ++ + + + YLG P G
Sbjct: 718 LRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATT 777
Query: 642 SDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTA 701
+ F F+ E++ R+ W +R L+R G T+ +V IP Y M +P +IC+ +
Sbjct: 778 NFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCI 837
Query: 702 RNFLWK-GSNNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWV 760
+ W K +H +W ++ PK +GG+G R N +LG+ W ++ + L
Sbjct: 838 ADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCS 897
Query: 761 NLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG-TSSFWFSNW 816
+L +Y +S EA + S +W S++ +++L G W G G T + NW
Sbjct: 898 RVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNW 954
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 435 bits (1118), Expect = e-120
Identities = 279/823 (33%), Positives = 405/823 (48%), Gaps = 42/823 (5%)
Query: 16 NETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIR---ILSKK 71
NE SE+RGG + F +F++ L DL +G F+W G+R + ++
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWR----GMRYDWFVRQR 91
Query: 72 LDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEAAWIDHYDY 131
LDR M+N W SFP E L SDH PL++ + R + FRF+ D+
Sbjct: 92 LDRAMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQ-FRFDNRLRDNDVV 150
Query: 132 GNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEW-RLKGVQSYLERVD 190
+++ +W T+ AS++ M R+ + W RL+ + S E ++
Sbjct: 151 NALIQETW---TNAGDASVLTKMNQC-------------RREIINWTRLQNLNS-AELIE 193
Query: 191 SYRHTLLEKELQDEYN------------HILFQEEMLWYQKSREQWVKLGDKNTAFFHAQ 238
+ L E D N H EE W Q+SR W+ GD+NT +FHA
Sbjct: 194 KTQKALEEALTADPPNPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAV 253
Query: 239 TVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDD 298
T RR N++ ++ NG++ + + + + YF++ F +E P +
Sbjct: 254 TRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQ 313
Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
LT +EV A+ S+ KAPGPDGF F+ YWHI+ DV +R F +
Sbjct: 314 GDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSK 373
Query: 359 HFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQS 418
+F ++ T I LIPK P D+RPI+LCN YKI+ K++ R++ L LI QS
Sbjct: 374 NFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQS 433
Query: 419 SFLPGRGTADNSIILQEILHFMKRSKRKKG-YVAFKLDLEKAFDNVNWDFLNSCLLDFGF 477
+F+PGR +DN +I E+LHF++ S KK +A K D+ KA+D V WDFL L FGF
Sbjct: 434 AFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGF 493
Query: 478 PDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDA 537
I + ++ CV+S +YS L NG PT GLRQGDPLSP LFILC E LS A
Sbjct: 494 HSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRA 553
Query: 538 VLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISK 597
+ + +GP+++HLLFADD + F+K+ ++ + R+ +ASG IN K
Sbjct: 554 QRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHK 613
Query: 598 SRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLAS 657
S +SS TP + I I+ GKYLG P GR KR F I++K++ + S
Sbjct: 614 SSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHS 673
Query: 658 WKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSNN-KGIHL 716
W +R L++ G+ + +VL+++P Y M LP +C I F W + +
Sbjct: 674 WASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSW 733
Query: 717 VNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEA 776
V W +T PK+ GGLG R N LL KL W ++ S L +L KY +S +E
Sbjct: 734 VAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMEC 793
Query: 777 NVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTS-SFWFSNWSS 818
+ S S W SII ++ILK G W G S W W S
Sbjct: 794 KLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLS 836
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 432 bits (1110), Expect = e-119
Identities = 272/821 (33%), Positives = 408/821 (49%), Gaps = 17/821 (2%)
Query: 9 WMLIGDFNETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRI 67
W LIGDFN+ E+ GG + F + + NC++ +L +TG FTW N N +
Sbjct: 109 WCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRND-QW 167
Query: 68 LSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRF-GGLPLTRGPRPFRFEAAWI 126
+ KLDR N W FP A L + SDH P+L++F L RG FR++
Sbjct: 168 VQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ--FRYDKRLD 225
Query: 127 DHYDYGNVVKRSW----STHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGV 182
D V+ RSW S TH+ SLI+ ++ H N R R+ L
Sbjct: 226 DDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRIKRLRKDLDAE 285
Query: 183 QSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIR 242
+S ++ + + ++D+ + EE+ W QKSR++W+ GDKNT FFHA
Sbjct: 286 KSI--QIPCWPRI---EYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSE 340
Query: 243 RKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKT 302
R N++ L N + ++ + A +F+ F + I EG +
Sbjct: 341 RLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNH 400
Query: 303 SLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDP 362
+L +T+ EV+ A+ S+ APGPDGF +FF+Q+W +V + + F TG
Sbjct: 401 NLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQ 460
Query: 363 AISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLP 422
++T I LIPKI SP D RPISLC+ LYKII+K+L RL+ L ++ QS+F+P
Sbjct: 461 DWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVP 520
Query: 423 GRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDII 481
R +DN ++ E++H ++ + R K ++AFK D+ KA+D V W FL + + GF +
Sbjct: 521 QRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKW 580
Query: 482 VKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQG 541
+ IM+CV+S +YS+L NG PT G+RQGDPLSP LF+LC E L + A G
Sbjct: 581 ISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAG 640
Query: 542 SWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAY 601
I + ++HLLFADD LL KA + + + ++ + SG IN++KS
Sbjct: 641 KITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAIT 700
Query: 602 YSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNR 661
+ + + + SGI GKYLG P KR F FI EK+Q+RL W +
Sbjct: 701 FGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAK 760
Query: 662 LLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSNNK-GIHLVNWK 720
L++ G+ L S+ +P Y M LP+N+C + +F W K IH ++W+
Sbjct: 761 TLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQ 820
Query: 721 TITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNS 780
+T PK GG G + + N LL K W ++Q L+ + +Y S + L A S
Sbjct: 821 RLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGS 880
Query: 781 NSSPSWFSIIRAKDILKTGYSWRAGAGTSSF-WFSNWSSHG 820
S +W SI+ +++L G G G +F W W G
Sbjct: 881 RPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDG 921
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 432 bits (1110), Expect = e-119
Identities = 272/821 (33%), Positives = 408/821 (49%), Gaps = 17/821 (2%)
Query: 9 WMLIGDFNETHLPSEQRGGTFHHNRA-ATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRI 67
W LIGDFN+ E+ GG + F + + NC++ +L +TG FTW N N +
Sbjct: 130 WCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRND-QW 188
Query: 68 LSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRF-GGLPLTRGPRPFRFEAAWI 126
+ KLDR N W FP A L + SDH P+L++F L RG FR++
Sbjct: 189 VQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ--FRYDKRLD 246
Query: 127 DHYDYGNVVKRSW----STHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGV 182
D V+ RSW S TH+ SLI+ ++ H N R R+ L
Sbjct: 247 DDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRIKRLRKDLDAE 306
Query: 183 QSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIR 242
+S ++ + + ++D+ + EE+ W QKSR++W+ GDKNT FFHA
Sbjct: 307 KSI--QIPCWPRI---EYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSE 361
Query: 243 RKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKT 302
R N++ L N + ++ + A +F+ F + I EG +
Sbjct: 362 RLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNH 421
Query: 303 SLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDP 362
+L +T+ EV+ A+ S+ APGPDGF +FF+Q+W +V + + F TG
Sbjct: 422 NLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQ 481
Query: 363 AISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLP 422
++T I LIPKI SP D RPISLC+ LYKII+K+L RL+ L ++ QS+F+P
Sbjct: 482 DWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVP 541
Query: 423 GRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDII 481
R +DN ++ E++H ++ + R K ++AFK D+ KA+D V W FL + + GF +
Sbjct: 542 QRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKW 601
Query: 482 VKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQG 541
+ IM+CV+S +YS+L NG PT G+RQGDPLSP LF+LC E L + A G
Sbjct: 602 ISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAG 661
Query: 542 SWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAY 601
I + ++HLLFADD LL KA + + + ++ + SG IN++KS
Sbjct: 662 KITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAIT 721
Query: 602 YSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNR 661
+ + + + SGI GKYLG P KR F FI EK+Q+RL W +
Sbjct: 722 FGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAK 781
Query: 662 LLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSNNK-GIHLVNWK 720
L++ G+ L S+ +P Y M LP+N+C + +F W K IH ++W+
Sbjct: 782 TLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQ 841
Query: 721 TITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNS 780
+T PK GG G + + N LL K W ++Q L+ + +Y S + L A S
Sbjct: 842 RLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGS 901
Query: 781 NSSPSWFSIIRAKDILKTGYSWRAGAGTSSF-WFSNWSSHG 820
S +W SI+ +++L G G G +F W W G
Sbjct: 902 RPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDG 942
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 425 bits (1093), Expect = e-117
Identities = 264/827 (31%), Positives = 402/827 (47%), Gaps = 49/827 (5%)
Query: 6 TGPWMLIGDFNETHLPSEQRGGTFHH-NRAATFSNFMNNCNLLDLTTTGGRFTW-HKNNN 63
+GPWM+ GDFNE +E++GG F+N +N CN+ DL + G ++W K N
Sbjct: 490 SGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGKRQN 549
Query: 64 GIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFEA 123
+ LDR N DW+ SFP E L SDH P+++ T+ + FR++
Sbjct: 550 --ETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVCTKRGQ-FRYDR 606
Query: 124 AWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIFNHDVFGNIFQRKSRVEWRLKGVQ 183
D+ + V+R W+ + + + R+ +W+ +
Sbjct: 607 RHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCC-------------RQELAKWKRRTKT 653
Query: 184 SYLERVDSYR---------HTLLEK---ELQDEYNHILFQEEMLWYQKSREQWVKLGDKN 231
+ E++++ + HTL + L+ + N EE+ W+ KSR +W+ LGD+N
Sbjct: 654 NTAEKIETLKYRVDAAERDHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNRWMLLGDRN 713
Query: 232 TAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEG 291
T FF+A T +R+ N+I + GI + + + A YF F +Q G
Sbjct: 714 TMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISG 773
Query: 292 RHPALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLV 351
P + + L +T +EV A+ ++ +APG DGF F+ W ++G+DV +V
Sbjct: 774 IAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMV 833
Query: 352 RSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNN 411
R F + D I+ T I LIPKI P D+RPISLC YKII+K+L+ RL+ L +
Sbjct: 834 RHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGD 893
Query: 412 LIGPYQSSFLPGRGTADNSIILQEILHFMK-RSKRKKGYVAFKLDLEKAFDNVNWDFLNS 470
+I Q++F+PG+ +DN ++ E+LH +K R + + GYVA K D+ KA+D V W+FL
Sbjct: 894 VISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEK 953
Query: 471 CLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKL 530
++ GF VK IM CV+S +Y +L NG+ P+ G+RQGDPLSPYLF+ C E L
Sbjct: 954 VMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVL 1013
Query: 531 SVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASG 590
S ++ A + + I D ISHLLFADD L F +A + ++ + +F ++ ASG
Sbjct: 1014 SNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASG 1073
Query: 591 LKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEK 650
KIN +KS + P + L + GI + GKYLG P GR K F +I+ K
Sbjct: 1074 QKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTK 1133
Query: 651 MQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKGSN 710
++ R W L+ G+ + ++ +P Y M LP IC+ I+ F W N
Sbjct: 1134 VKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWGKEN 1193
Query: 711 NKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSG 770
G LG + N LL K W ++ + L L Y
Sbjct: 1194 E-----------------GDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPN 1236
Query: 771 TSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAG-TSSFWFSNW 816
T+ L AN ++S W SI K +L+ G R G G T+ W W
Sbjct: 1237 TTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPW 1283
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 418 bits (1074), Expect = e-115
Identities = 257/794 (32%), Positives = 396/794 (49%), Gaps = 43/794 (5%)
Query: 41 MNNCNLLDLTTTGGRFTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDH 100
M C+L DL +G +W + ++ +LDR ++N W +P + LC SDH
Sbjct: 1 MAECDLYDLRHSGNFLSWRGKRHD-HVVHCRLDRALSNGAWAEDYPASRCIYLCFEGSDH 59
Query: 101 NPLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVMENSIIF 160
PLL F L + FR++ ++ + +V+ +W+ + + I I
Sbjct: 60 RPLLTHFD-LSKKKKKGVFRYDRRLKNNDEVTALVQEAWNLYDTDIVEEKISRCRLEI-- 116
Query: 161 NHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNHILFQ--------- 211
V+W QS + ++ R L E ++N L
Sbjct: 117 --------------VKWSRAKQQSSQKLIEENRQKLEEAMSSQDHNQELLSTINTNLLLA 162
Query: 212 ---EEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEE 268
EE W Q+SR+ W+ LGDKN+ +FHA T R NK ++ +G+ + +
Sbjct: 163 YKAEEEYWKQRSRQLWLALGDKNSGYFHAITRGRTVINKFSVIEKEDGVPEYEEAGILNV 222
Query: 269 ALKYFKKFFCGSQIPYSRFFNEGRHPA-LDDTGKTSLTSPITKKEVFAALNSMKPYKAPG 327
+YF+K F NEG A + + K ++ +E+ +A S+ KAPG
Sbjct: 223 ISEYFQKLFSA---------NEGARAATIKEAIKPFISPEQNPEEIKSACFSIHADKAPG 273
Query: 328 PDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPI 387
PDGF FF+ W VG ++ ++S F + P I+ T I LIPKI S D+RPI
Sbjct: 274 PDGFSASFFQSNWMTVGPNIVLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPI 333
Query: 388 SLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFMKR-SKRK 446
+LC YKII+K+L RL+P L +I QS+F+P R + DN +I E LH++K K
Sbjct: 334 ALCTVFYKIISKLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEK 393
Query: 447 KGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGNKMPPF 506
+ ++A K ++ KA+D + WDF+ + + GF + I+ C+++ +YS L NG+
Sbjct: 394 RCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAV 453
Query: 507 KPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFADDVLL 566
P GLRQGDPLSP+LFI+C E LS + A L GS + + P+++HLLFADD +
Sbjct: 454 TPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIF 513
Query: 567 FTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQSTTTL 626
F ++ + + ++ ASG IN SKS +S TP+ I GIQ L
Sbjct: 514 FCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGL 573
Query: 627 GKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPTYYMQI 686
GKYLG P + GR KR FN I+++++ R SW +R L+ G+ T+ SVL+++PTY M
Sbjct: 574 GKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSC 633
Query: 687 NWLPQNICDSIDQTARNFLWKGS-NNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLG 745
L ++C I +F W S + K + + W + + K GGLG + + N LL
Sbjct: 634 FKLLVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLA 693
Query: 746 KLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAG 805
KL W +VQS + + V +L KY +S L+ +V + SS W I KD++K+ G
Sbjct: 694 KLSWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIG 753
Query: 806 AGTSSF-WFSNWSS 818
+G + W W S
Sbjct: 754 SGLDTLVWNEPWLS 767
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 408 bits (1048), Expect = e-112
Identities = 267/814 (32%), Positives = 400/814 (48%), Gaps = 56/814 (6%)
Query: 96 LHSDHNPLLLRFGGLPLTRGPRPFRFEAAWIDHYDYGNVVKRSWSTHTHNPTASLIKVME 155
L SDH+P++ + RG + FRF+ WI + + W+ + ++ +
Sbjct: 2 LASDHSPVIATIAD-KIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLT 60
Query: 156 NSIIFNHDVFGNIFQRKSRVEWR-------------LKGVQSYLERVDSYRH---TLLEK 199
N R++ +WR LK +R D T L
Sbjct: 61 NC-------------RRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSREEITELTL 107
Query: 200 ELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGIST 259
L++ Y EE WYQKSR W+KLGD N+ FFHA T RR N+I L NGI +
Sbjct: 108 RLKEAYR----DEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWS 163
Query: 260 SDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPA---LDDTGKTSLTSPITKKEVFAA 316
+ + +Q A+ YF+ F + + F+E + D LT+ T+ EV AA
Sbjct: 164 IEDDDIQNIAVSYFQNLFTTAN---PQVFDEALGEVQVLITDRINDLLTADATECEVRAA 220
Query: 317 LNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKID 376
L + P KAPGPDG +FF++ W I+ D+ LV S G FD ++ T I LIPK +
Sbjct: 221 LFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTE 280
Query: 377 SPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEI 436
P + RPISLCN YK+I+K+L RL+ L NLI QS+F+ GR +DN +I QE+
Sbjct: 281 RPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEM 340
Query: 437 LHFMK-RSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYS 495
H ++ S K ++A K D+ KA+D V W+F+ + L GF + + IM C+++ Y
Sbjct: 341 FHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYK 400
Query: 496 LLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQI 555
+L NG P GLRQGDPLSPYLFILC E L I+ A Q I + P +
Sbjct: 401 VLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAV 460
Query: 556 SHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLT 615
SHLLFADD L F KA Q I + ++ SG +IN SKS + + ++
Sbjct: 461 SHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIK 520
Query: 616 AISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSV 675
I GI + +G YLG P G K F+F+ +++Q+R+ W + L++ G+ + SV
Sbjct: 521 LILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSV 580
Query: 676 LSTIPTYYMQINWLPQNICDSIDQTARNFLWKGS-NNKGIHLVNWKTITRPKSIGGLGIR 734
+T+P Y M LP+ I + F W + +++G+H + W + KS GGLG R
Sbjct: 581 AATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFR 640
Query: 735 SARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKD 794
+ D N LL K +W ++ + + L+ + +Y ++ L++ + + S W S+I A+
Sbjct: 641 NVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARS 700
Query: 795 ILKTGYSWRAGAGTS-SFWFSNW------SSHGYLGSLVPIIDIHDIHLTVKDVLTSVGQ 847
++ G R G+G S S W W Y GS+V D L VK ++ S
Sbjct: 701 LVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIV------DPSLKVKSLIDSRSN 754
Query: 848 HTNV-LYTNLPQGIAETINNSHMRFNANIDDTLG 880
N+ L L + ++ N N++DTLG
Sbjct: 755 FWNIDLLKELFDPEDVPLISALPIGNPNMEDTLG 788
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 407 bits (1045), Expect = e-111
Identities = 264/848 (31%), Positives = 407/848 (47%), Gaps = 27/848 (3%)
Query: 9 WMLIGDFNETHLPSEQRGGTFHHNR-AATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRI 67
W + GDFN+ E+ GG + F+ + C+L+++ G FTW G
Sbjct: 97 WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTW-AGRRGDHW 155
Query: 68 LSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRF-GGLPLTRGPRPFRFEAAWI 126
+ +LDR N +W FP + L SDH P+L++ RG FRF+ ++
Sbjct: 156 IQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQ--FRFDKRFL 213
Query: 127 DHYDYGNVVKRSWSTHTHNPTASL---IKVMENSIIF-----NHDVFGNIFQRKSRVEWR 178
D + R+WS H S+ ++ S+ N + I Q ++ +E
Sbjct: 214 FKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKE 273
Query: 179 LKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQ 238
V +RV ++L+K+L Y +EE W QKSR++W++ G++N+ +FHA
Sbjct: 274 QSLVWPIFQRV-----SVLKKDLAKAYR----EEEAYWKQKSRQKWLRSGNRNSKYFHAA 324
Query: 239 TVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDD 298
R+ +I KL+ NG + E A YF F S + G P + +
Sbjct: 325 VKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSE 384
Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
SL ++ +E+ A+ S+KP APGPDG +FF+ YW VG+ V V+ F G
Sbjct: 385 VMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADG 444
Query: 359 HFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQS 418
+ T + LIPK P D RPISLC+ LYKII+K++ RL+P+L ++ QS
Sbjct: 445 IMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQS 504
Query: 419 SFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGF 477
+F+ R DN ++ E++H +K R ++A K D+ KA+D V W +L S LL GF
Sbjct: 505 AFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGF 564
Query: 478 PDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDA 537
V IM CVSS YS+L N GLRQGDPLSP+LF+LC E L+ + A
Sbjct: 565 HLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKA 624
Query: 538 VLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISK 597
+G+ E I +GP + HLLFADD L KA Q + + + A+G IN++K
Sbjct: 625 QWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNK 684
Query: 598 SRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLAS 657
S + + GI + G YLG P K +++ ++++ +L
Sbjct: 685 SSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDV 744
Query: 658 WKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKG-SNNKGIHL 716
W R L++ G+ L SV +P + M LP C++++ +F W +++ IH
Sbjct: 745 WFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHW 804
Query: 717 VNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEA 776
+W+ + PK GGLG R + N LL K W ++ + L LL +Y T L+A
Sbjct: 805 QSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDA 864
Query: 777 NVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTSSF-WFSNW-SSHGYLGSLVPIIDIHDI 834
++ S W SI+ +++L G R G G S F W W +G+ + I+D+
Sbjct: 865 ALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNL-IYDV 923
Query: 835 HLTVKDVL 842
L VK +L
Sbjct: 924 TLKVKALL 931
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 407 bits (1045), Expect = e-111
Identities = 264/848 (31%), Positives = 407/848 (47%), Gaps = 27/848 (3%)
Query: 9 WMLIGDFNETHLPSEQRGGTFHHNR-AATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRI 67
W + GDFN+ E+ GG + F+ + C+L+++ G FTW G
Sbjct: 94 WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTW-AGRRGDHW 152
Query: 68 LSKKLDRGMANVDWRLSFPEAFVEVLCRLHSDHNPLLLRF-GGLPLTRGPRPFRFEAAWI 126
+ +LDR N +W FP + L SDH P+L++ RG FRF+ ++
Sbjct: 153 IQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQ--FRFDKRFL 210
Query: 127 DHYDYGNVVKRSWSTHTHNPTASL---IKVMENSIIF-----NHDVFGNIFQRKSRVEWR 178
D + R+WS H S+ ++ S+ N + I Q ++ +E
Sbjct: 211 FKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKE 270
Query: 179 LKGVQSYLERVDSYRHTLLEKELQDEYNHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQ 238
V +RV ++L+K+L Y +EE W QKSR++W++ G++N+ +FHA
Sbjct: 271 QSLVWPIFQRV-----SVLKKDLAKAYR----EEEAYWKQKSRQKWLRSGNRNSKYFHAA 321
Query: 239 TVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDD 298
R+ +I KL+ NG + E A YF F S + G P + +
Sbjct: 322 VKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSE 381
Query: 299 TGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTG 358
SL ++ +E+ A+ S+KP APGPDG +FF+ YW VG+ V V+ F G
Sbjct: 382 VMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADG 441
Query: 359 HFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQS 418
+ T + LIPK P D RPISLC+ LYKII+K++ RL+P+L ++ QS
Sbjct: 442 IMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQS 501
Query: 419 SFLPGRGTADNSIILQEILHFMKRSKR-KKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGF 477
+F+ R DN ++ E++H +K R ++A K D+ KA+D V W +L S LL GF
Sbjct: 502 AFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGF 561
Query: 478 PDIIVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDA 537
V IM CVSS YS+L N GLRQGDPLSP+LF+LC E L+ + A
Sbjct: 562 HLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKA 621
Query: 538 VLQGSWEPIHIINDGPQISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISK 597
+G+ E I +GP + HLLFADD L KA Q + + + A+G IN++K
Sbjct: 622 QWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNK 681
Query: 598 SRAYYSSGTPNGKINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLAS 657
S + + GI + G YLG P K +++ ++++ +L
Sbjct: 682 SSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDV 741
Query: 658 WKNRLLNRTGRLTLATSVLSTIPTYYMQINWLPQNICDSIDQTARNFLWKG-SNNKGIHL 716
W R L++ G+ L SV +P + M LP C++++ +F W +++ IH
Sbjct: 742 WFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHW 801
Query: 717 VNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKYSSGTSLLEA 776
+W+ + PK GGLG R + N LL K W ++ + L LL +Y T L+A
Sbjct: 802 QSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDA 861
Query: 777 NVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTSSF-WFSNW-SSHGYLGSLVPIIDIHDI 834
++ S W SI+ +++L G R G G S F W W +G+ + I+D+
Sbjct: 862 ALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNL-IYDV 920
Query: 835 HLTVKDVL 842
L VK +L
Sbjct: 921 TLKVKALL 928
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 400 bits (1027), Expect = e-109
Identities = 238/738 (32%), Positives = 371/738 (50%), Gaps = 21/738 (2%)
Query: 35 ATFSNFMNNCNLLDLTTTGGRFTWHKNNN-GIRILSKKLDRGMANVDWRLSFPEAFVEVL 93
A F + +C L DL G FTW +++ + ++LDR +AN WR FP V
Sbjct: 498 AKFRQALEDCQLHDLGFVGDAFTWRNHHHLASNYIKERLDRAVANGAWRARFPLVRVING 557
Query: 94 CRLHSDHNPLLLRFGGLPLTRGPRPF----RFEAAWIDHYDYGNVVKRSWSTHTHNPTAS 149
HSDH +++ G + +P +FEA W++ + V+ +W
Sbjct: 558 DPRHSDHRSVIVETGATEKQQWGQPLEIMQKFEARWLEEEECQARVEEAWENALEGGQTR 617
Query: 150 LIKVMENSI----IFNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEY 205
L+++ + ++ V G + K RV+ K ++ S R E L+ +
Sbjct: 618 LMEIQSRVLKELWAWDRTVLGEL---KKRVKNLRKELEKCRREPISNRQVNREHLLRYKL 674
Query: 206 NHILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNI- 264
+L Q+ + W Q++ W+ GD+NT FFHAQ ++K N I KLQ +G + + +
Sbjct: 675 ERLLDQQHIYWKQRAHSTWLTKGDRNTKFFHAQASEKKKRNTIQKLQDGHGGLVAGNQLK 734
Query: 265 --LQEEALKYFKKFFCGSQIPYSRFFNEGRHPALDDTGKTSLTSPITKKEVFAALNSMKP 322
+ + + F+ C + P + + L +P ++EV+ AL M
Sbjct: 735 SFISNQYQQLFRSNGCSQMDAVLQCVQARVTPEM----REGLAAPYQREEVWVALKDMGD 790
Query: 323 YKAPGPDGFHCIFFKQYWHIVGDDVFHLVRSAFLTGHFDPAISNTLIALIPKIDSPNTYK 382
KAPG DG IF+K++ + GD V V + G ++T++ LIPK P+T K
Sbjct: 791 LKAPGADGIPAIFYKKFLSLAGDKVKDEVLAVLNGGDMPQGWNDTVVVLIPKTKQPDTLK 850
Query: 383 DFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIILQEILHFM-K 441
D RPISLCN YK+I+KV+V+RL+ L +I P QS+F+P R N ++ E+ H++ +
Sbjct: 851 DLRPISLCNVAYKLISKVIVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTHYLNQ 910
Query: 442 RSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSANYSLLWNGN 501
R K K G A KLD+ KA+D V WDFL +L GF D V L+M CV+S Y + NG
Sbjct: 911 RKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMKCVTSVTYRIKINGE 970
Query: 502 KMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGPQISHLLFA 561
P GLRQGDPLSPYLFI+C E LS +Q A G E I + D P+I+HL FA
Sbjct: 971 HSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIKVCRDTPRINHLFFA 1030
Query: 562 DDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINNLTAISGIQ 621
DD L+ +A + Q + + + + ASG IN KS +S T + + I
Sbjct: 1031 DDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALCIN 1090
Query: 622 STTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLATSVLSTIPT 681
+YLG P+ G+ +R F +I K+ R+ W+ +LL++ G+ L +V IPT
Sbjct: 1091 QEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAGKEILVKAVAQAIPT 1150
Query: 682 YYMQINWLPQNICDSIDQTARNFLWKGSNNKG-IHLVNWKTITRPKSIGGLGIRSARDAN 740
Y M L + +CD I+ + W ++ + IH ++W+ +T PK +GG G R N
Sbjct: 1151 YAMSCFDLTKGLCDEINSMISKWWWSQNDKENKIHWLSWEKMTLPKKLGGPGFRDLHLFN 1210
Query: 741 ICLLGKLVWDMVQSTNKL 758
+ +L + W ++ + + L
Sbjct: 1211 MAMLARQAWRLLLNVDSL 1228
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.331 0.143 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,063,274,852
Number of Sequences: 2540612
Number of extensions: 87705530
Number of successful extensions: 216569
Number of sequences better than 10.0: 1374
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 493
Number of HSP's that attempted gapping in prelim test: 212619
Number of HSP's gapped (non-prelim): 1854
length of query: 1214
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1074
effective length of database: 507,674,714
effective search space: 545242642836
effective search space used: 545242642836
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 81 (35.8 bits)
Medicago: description of AC149130.9