Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC149130.3 - phase: 0 /pseudo
         (171 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB78299.1| putative protein [Arabidopsis thaliana] gi|47259...   106  3e-22
ref|NP_192993.2| F-box family protein [Arabidopsis thaliana]          106  3e-22
emb|CAB79194.1| putative protein [Arabidopsis thaliana] gi|57383...    72  8e-12
gb|AAF21197.1| unknown protein [Arabidopsis thaliana] gi|1598347...    53  3e-06
emb|CAD56662.1| S locus F-box (SLF)-S1E protein [Antirrhinum his...    48  9e-05
emb|CAD56663.1| S locus F-box (SLF)-S1 protein [Antirrhinum hisp...    48  1e-04
emb|CAD56660.1| S locus F-box (SLF)-S4D protein [Antirrhinum his...    48  1e-04
emb|CAC33011.1| S locus F-box (SLF)-S2-like protein [Antirrhinum...    48  1e-04
gb|AAF30317.1| hypothetical protein [Arabidopsis thaliana] gi|21...    46  5e-04
gb|AAP04033.1| putative F-box protein family [Arabidopsis thalia...    46  5e-04
emb|CAD56664.1| S locus F-box (SLF)-S5 protein [Antirrhinum hisp...    46  5e-04
emb|CAD56661.1| S locus F-box (SLF)-S4 protein [Antirrhinum hisp...    46  5e-04
emb|CAC33022.1| SLF-S2 protein [Antirrhinum hispanicum] gi|13161...    45  0.001
gb|AAP37713.1| At3g23880 [Arabidopsis thaliana] gi|9294656|dbj|B...    43  0.003
emb|CAD56853.1| S locus F-box (SLF)-S5A protein [Antirrhinum his...    43  0.003
gb|AAT39292.1| putative F-box domain containing protein [Solanum...    43  0.003
emb|CAD56852.1| S locus F-box (SLF)-S4A protein [Antirrhinum his...    42  0.005
gb|AAT38720.1| putative F-Box protein [Solanum demissum]               42  0.005
gb|AAU93581.1| putative F-box protein [Solanum demissum]               39  0.075
gb|AAT38719.1| putative F-Box protein [Solanum demissum]               39  0.075

>emb|CAB78299.1| putative protein [Arabidopsis thaliana] gi|4725955|emb|CAB41726.1|
           putative protein [Arabidopsis thaliana]
           gi|7487230|pir||T07648 hypothetical protein T1P17.150 -
           Arabidopsis thaliana
          Length = 408

 Score =  106 bits (264), Expect = 3e-22
 Identities = 56/143 (39%), Positives = 83/143 (57%), Gaps = 8/143 (5%)

Query: 2   GVFVENSIRCIMAKKLDGLHPSLIVAFNLTLEIFNEVPLP-AELQGETSLLIDVAVLGGC 60
           GV   NS+  ++ ++   +  +LIV F+L LE F  V  P A   G   + +D+ VL GC
Sbjct: 212 GVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGC 271

Query: 61  LCITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCFTSHLRYSNPIGYSSDGSKVLFEG 120
           LC+  NY+ + +DVW+MKEY  RDSW K+FT+ K        Y  P+ YS D  K     
Sbjct: 272 LCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKK----- 326

Query: 121 IEVLLDVHYKKLFWYDLKSERVS 143
             VLL+++  KL W+DL+S+++S
Sbjct: 327 --VLLELNNTKLVWFDLESKKMS 347


>ref|NP_192993.2| F-box family protein [Arabidopsis thaliana]
          Length = 413

 Score =  106 bits (264), Expect = 3e-22
 Identities = 56/143 (39%), Positives = 83/143 (57%), Gaps = 8/143 (5%)

Query: 2   GVFVENSIRCIMAKKLDGLHPSLIVAFNLTLEIFNEVPLP-AELQGETSLLIDVAVLGGC 60
           GV   NS+  ++ ++   +  +LIV F+L LE F  V  P A   G   + +D+ VL GC
Sbjct: 212 GVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGC 271

Query: 61  LCITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCFTSHLRYSNPIGYSSDGSKVLFEG 120
           LC+  NY+ + +DVW+MKEY  RDSW K+FT+ K        Y  P+ YS D  K     
Sbjct: 272 LCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKK----- 326

Query: 121 IEVLLDVHYKKLFWYDLKSERVS 143
             VLL+++  KL W+DL+S+++S
Sbjct: 327 --VLLELNNTKLVWFDLESKKMS 347


>emb|CAB79194.1| putative protein [Arabidopsis thaliana] gi|5738370|emb|CAB52813.1|
           putative protein [Arabidopsis thaliana]
           gi|15235636|ref|NP_193970.1| F-box family
           protein-related [Arabidopsis thaliana]
           gi|25407584|pir||D85256 hypothetical protein AT4g22390
           [imported] - Arabidopsis thaliana
          Length = 394

 Score = 71.6 bits (174), Expect = 8e-12
 Identities = 42/142 (29%), Positives = 73/142 (50%), Gaps = 8/142 (5%)

Query: 2   GVFVENSIRCIMAKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCL 61
           GV V N +  I+ ++   +  + I+ ++L  +    +  P EL  E ++  D+ VL GC+
Sbjct: 211 GVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNM--DIGVLDGCV 268

Query: 62  CITVNYETTKIDVWVMKEYGYRDSWCKLFTLVKSCFTSHLRYSNPIGYSSDGSKVLFEGI 121
           C+    E + +DVWV+KEY    SW KL+ + K      + +  P+  S D SK+L E  
Sbjct: 269 CLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLE-- 326

Query: 122 EVLLDVHYKKLFWYDLKSERVS 143
                 +   L W+DL+S+ ++
Sbjct: 327 ----INNAANLMWFDLESQSLT 344


>gb|AAF21197.1| unknown protein [Arabidopsis thaliana] gi|15983479|gb|AAL11607.1|
           AT3g07870/F17A17_21 [Arabidopsis thaliana]
           gi|18398079|ref|NP_566322.1| F-box family protein
           [Arabidopsis thaliana]
          Length = 417

 Score = 53.1 bits (126), Expect = 3e-06
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 11/137 (8%)

Query: 26  VAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNYETTKIDVWVMKEYGYRDS 85
           V+F+L  E F E+P P +  G       +  L GCLC  V     K+D+WVMK YG ++S
Sbjct: 263 VSFDLEDEEFKEIPKP-DCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKES 321

Query: 86  WCKLF---TLVKSCFTSHLRYSNPIGYSSDGSKV-----LFEGIEVLLDVHYKKLFWYDL 137
           W K +   T +      +L     I  +++  KV     L E  E+LL+   + L  YD 
Sbjct: 322 WGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDP 381

Query: 138 KSERVS--YVEGIPKLF 152
           K  +       G+P  F
Sbjct: 382 KLGKFKDLLFHGLPNWF 398


>emb|CAD56662.1| S locus F-box (SLF)-S1E protein [Antirrhinum hispanicum]
          Length = 384

 Score = 48.1 bits (113), Expect = 9e-05
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 22/85 (25%)

Query: 21  HPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCIT--------VNY-ETTK 71
           +P  I+ F+++ EIF+E   P   +          + GGCLC+T        + Y ++TK
Sbjct: 241 YPGSILTFDISTEIFSEFEYPDGFR---------ELYGGCLCLTALSECLSVIRYNDSTK 291

Query: 72  ----IDVWVMKEYGYRDSWCKLFTL 92
               I++WVMK YG  DSW K F L
Sbjct: 292 DPQFIEIWVMKVYGNSDSWTKDFVL 316


>emb|CAD56663.1| S locus F-box (SLF)-S1 protein [Antirrhinum hispanicum]
          Length = 376

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 42/84 (49%), Gaps = 6/84 (7%)

Query: 14  AKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNY-----E 68
           A   D  +   I+ F++  E+F E+  P  L   ++  + +  L  CL + V Y     E
Sbjct: 227 ANSTDIFYADFILTFDIITEVFKEMAYPHCLAQFSNSFLSLMSLNECLAM-VRYKEWMEE 285

Query: 69  TTKIDVWVMKEYGYRDSWCKLFTL 92
               D+WVMK+YG R+SW K + +
Sbjct: 286 PELFDIWVMKQYGVRESWTKQYVI 309


>emb|CAD56660.1| S locus F-box (SLF)-S4D protein [Antirrhinum hispanicum]
          Length = 374

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 25/73 (34%), Positives = 41/73 (55%), Gaps = 3/73 (4%)

Query: 22  PSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNYETTK--IDVWVMKE 79
           P +I+ F+++ E+F +   P+  +  T L  +  +L  C   +V  E  +  I+VWVMKE
Sbjct: 238 PDVILTFDVSTEVFGQFEHPSGFKLCTGLQHNFMILNECFA-SVRSEVVRCLIEVWVMKE 296

Query: 80  YGYRDSWCKLFTL 92
           YG + SW K F +
Sbjct: 297 YGIKQSWTKKFVI 309


>emb|CAC33011.1| S locus F-box (SLF)-S2-like protein [Antirrhinum hispanicum]
          Length = 376

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 26/84 (30%), Positives = 42/84 (49%), Gaps = 6/84 (7%)

Query: 14  AKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNY-----E 68
           A   D  +   I+ F++  E+F E+  P  L   ++  + +  L  CL + V Y     E
Sbjct: 227 ANSTDIFYADFILTFDIITEVFKEMAYPHCLAQFSNSFLSLMSLNECLAM-VRYKEWMEE 285

Query: 69  TTKIDVWVMKEYGYRDSWCKLFTL 92
               D+WVMK+YG R+SW K + +
Sbjct: 286 PELFDIWVMKQYGVRESWTKQYVI 309


>gb|AAF30317.1| hypothetical protein [Arabidopsis thaliana]
           gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
           thaliana]
          Length = 416

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 37/68 (53%), Gaps = 2/68 (2%)

Query: 24  LIVAFNLTLEIFNEVPLPAELQGETSLLIDVAV--LGGCLCITVNYETTKIDVWVMKEYG 81
           ++VAF++  E F E+P+P E +  +    +  V  L G LC+  +      D+WVM EYG
Sbjct: 277 VVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYG 336

Query: 82  YRDSWCKL 89
              SW ++
Sbjct: 337 EAKSWSRI 344


>gb|AAP04033.1| putative F-box protein family [Arabidopsis thaliana]
           gi|26451648|dbj|BAC42921.1| unknown protein [Arabidopsis
           thaliana] gi|30679777|ref|NP_566277.2| F-box family
           protein [Arabidopsis thaliana]
          Length = 427

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 37/68 (53%), Gaps = 2/68 (2%)

Query: 24  LIVAFNLTLEIFNEVPLPAELQGETSLLIDVAV--LGGCLCITVNYETTKIDVWVMKEYG 81
           ++VAF++  E F E+P+P E +  +    +  V  L G LC+  +      D+WVM EYG
Sbjct: 288 VVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYG 347

Query: 82  YRDSWCKL 89
              SW ++
Sbjct: 348 EAKSWSRI 355


>emb|CAD56664.1| S locus F-box (SLF)-S5 protein [Antirrhinum hispanicum]
          Length = 376

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 14  AKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNY-----E 68
           A   D  +   I+ F++  E+F E+  P  L   ++  + +  L  CL + V Y     E
Sbjct: 227 ANSTDIFYADFILTFDIITEVFKEMAYPHCLAQFSNSFLSLMSLNECLAM-VRYKEWMEE 285

Query: 69  TTKIDVWVMKEYGYRDSWCKLFTL 92
               D+WVM +YG R+SW K + +
Sbjct: 286 PELFDIWVMNQYGVRESWTKQYVI 309


>emb|CAD56661.1| S locus F-box (SLF)-S4 protein [Antirrhinum hispanicum]
          Length = 376

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 14  AKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNY-----E 68
           A   D  +   I+ F++  E+F E+  P  L   ++  + +  L  CL + V Y     E
Sbjct: 227 ANSTDIFYADFILTFDIITEVFKEMAYPHCLAQFSNSFLSLMSLNECLAM-VRYKEWMEE 285

Query: 69  TTKIDVWVMKEYGYRDSWCKLFTL 92
               D+WVM +YG R+SW K + +
Sbjct: 286 PELFDIWVMNQYGVRESWTKQYVI 309


>emb|CAC33022.1| SLF-S2 protein [Antirrhinum hispanicum] gi|13161526|emb|CAC33010.1|
           S locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
          Length = 376

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 23/83 (27%), Positives = 40/83 (47%), Gaps = 4/83 (4%)

Query: 14  AKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNYETTK-- 71
           A   D  +   I+ F++  E+F E+  P  L   ++  + +  L  CL +    E  +  
Sbjct: 227 ANSTDIFYADFILTFDIITEVFKEMAYPHCLAQFSNSFLSLMSLNECLAMVRYKEWMEDP 286

Query: 72  --IDVWVMKEYGYRDSWCKLFTL 92
              D+WVM +YG R+SW K + +
Sbjct: 287 ELFDIWVMNQYGVRESWTKQYVI 309


>gb|AAP37713.1| At3g23880 [Arabidopsis thaliana] gi|9294656|dbj|BAB03005.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
           thaliana] gi|15229536|ref|NP_189030.1| F-box family
           protein [Arabidopsis thaliana]
          Length = 364

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 31/95 (32%), Positives = 49/95 (50%), Gaps = 7/95 (7%)

Query: 25  IVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCLCITVNYETTKIDVWVMKEYGYRD 84
           I++++++ + F E+P P    G     + +  L GCL +    +    DVWVMKE+G   
Sbjct: 235 IISYDMSRDEFKELPGPV-CCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVY 293

Query: 85  SWCKLFTLVKSCFTSHLRYSNPIGYSSDGSKVLFE 119
           SW KL ++     T  +R   P+ + SDG  VL E
Sbjct: 294 SWSKLLSI--PGLTDFVR---PL-WISDGLVVLLE 322


>emb|CAD56853.1| S locus F-box (SLF)-S5A protein [Antirrhinum hispanicum]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 22  PSLIVAFNLTLEIFNEVPLPAELQGET-SLLIDVAVLGGCLCITVNYE-----TTKIDVW 75
           P  I+ FN+  E+F ++    + + E     + +  +  CL + V YE        ID+W
Sbjct: 251 PDTILTFNIRTEVFGQLEFIPDWEEEVYGYCVSLIAIDNCLGM-VRYEGWLEEPQLIDIW 309

Query: 76  VMKEYGYRDSWCKLFTL 92
           VM EYG  +SW K F +
Sbjct: 310 VMNEYGVGESWTKSFVI 326


>gb|AAT39292.1| putative F-box domain containing protein [Solanum demissum]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 2   GVFVENSIRCIMAKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCL 61
           G FV   I   ++  +D  +   I++ +L  E +  + LP +  G+ S  + + V+G  L
Sbjct: 144 GKFVNGKIYWALSADVDTFNMCNIISLDLADETWRRLELP-DSYGKGSYPLALGVVGSHL 202

Query: 62  CITV--NYETTKIDVWVMKEYGYRDSWCKLFTL 92
            +    + E T  DVW+ K+ G   SW K+FT+
Sbjct: 203 SVLCLNSIEGTNSDVWIRKDCGVEVSWTKIFTV 235


>emb|CAD56852.1| S locus F-box (SLF)-S4A protein [Antirrhinum hispanicum]
          Length = 391

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 7/77 (9%)

Query: 22  PSLIVAFNLTLEIFNEVPLPAELQGET-SLLIDVAVLGGCLCITVNYE-----TTKIDVW 75
           P  I+ FN+  E+F ++    + + E     + +  +  CL + + YE        ID+W
Sbjct: 238 PDTILTFNIGTEVFGQLEFIPDWEEEVYGYCVSLIAIDNCLGM-IRYEGWLEEPQLIDIW 296

Query: 76  VMKEYGYRDSWCKLFTL 92
           VM EYG  +SW K F +
Sbjct: 297 VMNEYGVGESWTKSFVI 313


>gb|AAT38720.1| putative F-Box protein [Solanum demissum]
          Length = 372

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 28/94 (29%), Positives = 47/94 (49%), Gaps = 5/94 (5%)

Query: 2   GVFVENSIRCIMAKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGG-- 59
           G FV   I   ++  +D  +   I++ +L  E +  + LP +  G+ S  + + V+G   
Sbjct: 209 GKFVNGKIYWALSADVDTFNMCNIISLDLADETWRRLELP-DSYGKGSYPLALGVVGSHL 267

Query: 60  -CLCITVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
             LC+    E T  DVW+ K+ G   SW K+FT+
Sbjct: 268 SVLCLNC-IEGTNSDVWIRKDCGVEVSWTKIFTV 300


>gb|AAU93581.1| putative F-box protein [Solanum demissum]
          Length = 383

 Score = 38.5 bits (88), Expect = 0.075
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 2   GVFVENSIRCIMAKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCL 61
           G FV   +    +  ++      I +F+L    +  + LP+   G+ +  I+V V+G  L
Sbjct: 209 GRFVNGKLYWTSSTCINNYKVCNITSFDLADGTWGSLELPS--CGKDNSYINVGVVGSDL 266

Query: 62  CI--TVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
            +  T        DVW+MK  G   SW KLFT+
Sbjct: 267 SLLYTCQLGAATSDVWIMKHSGVNVSWTKLFTI 299


>gb|AAT38719.1| putative F-Box protein [Solanum demissum]
          Length = 327

 Score = 38.5 bits (88), Expect = 0.075
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 2   GVFVENSIRCIMAKKLDGLHPSLIVAFNLTLEIFNEVPLPAELQGETSLLIDVAVLGGCL 61
           G FV   +    +  ++      I +F+L    +  + LP+   G+ +  I+V V+G  L
Sbjct: 211 GRFVNGKLYWTSSSCINNYKVCNITSFDLADGTWERLELPS--CGKDNSYINVGVVGSDL 268

Query: 62  CI--TVNYETTKIDVWVMKEYGYRDSWCKLFTL 92
            +  T        DVW+MK  G   SW KLFT+
Sbjct: 269 SLLYTCQRGAATSDVWIMKHSGVNVSWTKLFTI 301


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.326    0.143    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 289,060,782
Number of Sequences: 2540612
Number of extensions: 11633939
Number of successful extensions: 39264
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 39209
Number of HSP's gapped (non-prelim): 66
length of query: 171
length of database: 863,360,394
effective HSP length: 119
effective length of query: 52
effective length of database: 561,027,566
effective search space: 29173433432
effective search space used: 29173433432
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)


Medicago: description of AC149130.3