BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149050.7 + phase: 0 /pseudo
(887 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172693.1| disease resistance protein (CC-NBS-LRR class), ... 38 1.7
ref|NP_061218.2| golgi autoantigen, golgin subfamily a, 4 [Mus m... 37 2.9
gb|AAH37641.1| Golga4 protein [Mus musculus] 37 2.9
emb|CAB81179.1| putative disease resistance protein [Arabidopsis... 37 3.8
gb|AAF79659.1| F5O11.3 [Arabidopsis thaliana] 37 3.8
ref|NP_172692.1| disease resistance protein (CC-NBS-LRR class), ... 37 3.8
gb|AAH96467.1| Unknown (protein for IMAGE:3668912) [Mus musculus] 37 3.8
gb|AAF19701.1| F2K11.26 [Arabidopsis thaliana] gi|15221747|ref|N... 36 4.9
emb|CAG04708.1| unnamed protein product [Tetraodon nigroviridis] 36 4.9
emb|CAI11711.1| novel RasGEF domain containing protein (zgc:6365... 35 8.4
gb|AAH55185.1| Hypothetical protein MGC63650 [Danio rerio] gi|41... 35 8.4
gb|AAD03672.1| resistance protein candidate RGC2K [Lactuca sativ... 35 8.4
>ref|NP_172693.1| disease resistance protein (CC-NBS-LRR class), putative
[Arabidopsis thaliana] gi|46395648|sp|P60839|DRL2_ARATH
Probable disease resistance protein At1g12290
Length = 884
Score = 37.7 bits (86), Expect = 1.7
Identities = 19/57 (33%), Positives = 32/57 (55%)
Query: 29 YLTQHKKITTNLEEELERLKMIKQALQTRVETERRKGYEIAPNVQKWLYDVTTIENE 85
Y+ K+ T+LEE +E LK ++ L +V+T G + ++ WL V TIE++
Sbjct: 28 YIQNIKENLTSLEEAMEDLKALRDDLLRKVQTAEEGGLQRLHQIKVWLKRVKTIESQ 84
>ref|NP_061218.2| golgi autoantigen, golgin subfamily a, 4 [Mus musculus]
gi|20043257|gb|AAC05573.2| golgi autoantigen golgin
subtype a4; tGolgin-1 [Mus musculus]
gi|32469763|sp|Q91VW5|GOGA4_MOUSE Golgi autoantigen,
golgin subfamily A member 4 (tGolgin-1)
Length = 2238
Score = 37.0 bits (84), Expect = 2.9
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 18 LVVESTMKHFKYLTQHKKITTNLEEELERLKMIKQALQTRVETERRKGYEIAPNVQKWLY 77
+ +E + + LTQ K+ +L LE L++ K+A+ T E + + E+ + +
Sbjct: 533 IALEKSRSEYLKLTQEKEQQESLA--LEELELQKKAILTESENKLQ---ELGQEAEAYRT 587
Query: 78 DVTTIENELQKWLSDDNAQI*HLIIHWERKPLKALKILQA 117
+ +E L+K L + Q HL +H E + K K L A
Sbjct: 588 RILELETSLEKSLQESKTQSEHLAVHLEAEKNKHNKELTA 627
>gb|AAH37641.1| Golga4 protein [Mus musculus]
Length = 894
Score = 37.0 bits (84), Expect = 2.9
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 18 LVVESTMKHFKYLTQHKKITTNLEEELERLKMIKQALQTRVETERRKGYEIAPNVQKWLY 77
+ +E + + LTQ K+ +L LE L++ K+A+ T E + + E+ + +
Sbjct: 440 IALEKSRSEYLKLTQEKEQQESLA--LEELELQKKAILTESENKLQ---ELGQEAEAYRT 494
Query: 78 DVTTIENELQKWLSDDNAQI*HLIIHWERKPLKALKILQA 117
+ +E L+K L + Q HL +H E + K K L A
Sbjct: 495 RILELETSLEKSLQESKTQSEHLAVHLEAEKNKHNKELTA 534
>emb|CAB81179.1| putative disease resistance protein [Arabidopsis thaliana]
gi|46395629|sp|O82484|DRL23_ARATH Putative disease
resistance protein At4g10780 gi|3600040|gb|AAC35528.1|
similar to Arabidopsis thaliana disease resistance
protein RPS2 (GB:U14158) gi|15236915|ref|NP_192816.1|
disease resistance protein (CC-NBS-LRR class), putative
[Arabidopsis thaliana]
Length = 892
Score = 36.6 bits (83), Expect = 3.8
Identities = 24/75 (32%), Positives = 34/75 (45%)
Query: 29 YLTQHKKITTNLEEELERLKMIKQALQTRVETERRKGYEIAPNVQKWLYDVTTIENELQK 88
Y+ + K LE+ +E L + + RV+ E KG E VQ WL V I N+
Sbjct: 28 YIHKLKDNIVALEKAIEDLTATRDDVLRRVQMEEGKGLERLQQVQVWLKRVEIIRNQFYD 87
Query: 89 WLSDDNAQI*HLIIH 103
LS N +I L +
Sbjct: 88 LLSARNIEIQRLCFY 102
>gb|AAF79659.1| F5O11.3 [Arabidopsis thaliana]
Length = 1789
Score = 36.6 bits (83), Expect = 3.8
Identities = 20/75 (26%), Positives = 43/75 (56%), Gaps = 1/75 (1%)
Query: 29 YLTQHKKITTNLEEELERLKMIKQALQTRVETER-RKGYEIAPNVQKWLYDVTTIENELQ 87
Y+ + K +++++E LK + ++ RV+ E + E VQ WL +V+T+EN+
Sbjct: 923 YICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERLSQVQGWLTNVSTVENKFN 982
Query: 88 KWLSDDNAQI*HLII 102
+ L+ ++A++ L +
Sbjct: 983 ELLTTNDAELQRLCL 997
>ref|NP_172692.1| disease resistance protein (CC-NBS-LRR class), putative
[Arabidopsis thaliana] gi|46395647|sp|P60838|DRL1_ARATH
Probable disease resistance protein At1g12280
Length = 894
Score = 36.6 bits (83), Expect = 3.8
Identities = 20/75 (26%), Positives = 43/75 (56%), Gaps = 1/75 (1%)
Query: 29 YLTQHKKITTNLEEELERLKMIKQALQTRVETER-RKGYEIAPNVQKWLYDVTTIENELQ 87
Y+ + K +++++E LK + ++ RV+ E + E VQ WL +V+T+EN+
Sbjct: 28 YICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERLSQVQGWLTNVSTVENKFN 87
Query: 88 KWLSDDNAQI*HLII 102
+ L+ ++A++ L +
Sbjct: 88 ELLTTNDAELQRLCL 102
>gb|AAH96467.1| Unknown (protein for IMAGE:3668912) [Mus musculus]
Length = 973
Score = 36.6 bits (83), Expect = 3.8
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 18 LVVESTMKHFKYLTQHKKITTNLEEELERLKMIKQALQTRVETERRKGYEIAPNVQKWLY 77
+ +E + + LTQ K+ +L LE L++ K+A+ T E + + E+ + +
Sbjct: 533 IALEKSRSDYLKLTQEKEQQESLA--LEELELQKKAILTESENKLQ---ELGQEAEAYRT 587
Query: 78 DVTTIENELQKWLSDDNAQI*HLIIHWERKPLKALKILQA 117
+ +E L+K L + Q HL +H E + K K L A
Sbjct: 588 RILELETSLEKSLQESKTQSEHLAVHLEAEKNKHNKELTA 627
>gb|AAF19701.1| F2K11.26 [Arabidopsis thaliana] gi|15221747|ref|NP_176525.1|
disease resistance protein (CC-NBS-LRR class), putative
[Arabidopsis thaliana] gi|46396023|sp|Q9SH22|DRL20_ARATH
Putative disease resistance protein At1g63360
gi|12324357|gb|AAG52149.1| unknown protein; 6658-9312
[Arabidopsis thaliana]
Length = 884
Score = 36.2 bits (82), Expect = 4.9
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 29 YLTQHKKITTNLEEELERLKMIKQALQTRVETERRKGYEIAPNVQKWLYDVTTIENELQK 88
Y +K LE+ ++ LK + L+ R++ E +G + Q WL V T+E+ +
Sbjct: 26 YTHNLEKNLAALEKTMKELKAKRDDLERRLKREEARGLQRLSEFQVWLDSVATVEDIIIT 85
Query: 89 WLSDDNAQI*HLII 102
L D N +I L +
Sbjct: 86 LLRDRNVEIQRLCL 99
>emb|CAG04708.1| unnamed protein product [Tetraodon nigroviridis]
Length = 589
Score = 36.2 bits (82), Expect = 4.9
Identities = 22/70 (31%), Positives = 42/70 (59%), Gaps = 7/70 (10%)
Query: 14 KLGELVVESTMKHFK-YLTQHKKITTNLEEELERLKMIKQALQTRVETERRK-----GYE 67
K+GE+ V+ ++ FK + HK+ +++ + E LK +++++ TR ER+K YE
Sbjct: 381 KVGEITVDEAVQEFKAWQFDHKQRASSIRYQHENLKQLRESI-TRRHKERQKPGKELDYE 439
Query: 68 IAPNVQKWLY 77
I+ +Q+ LY
Sbjct: 440 ISAPLQRSLY 449
>emb|CAI11711.1| novel RasGEF domain containing protein (zgc:63650) [Danio rerio]
Length = 374
Score = 35.4 bits (80), Expect = 8.4
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 29 YLTQHKKITTNLEEELERLKMIKQALQTRVETERRKGYEIA--PNVQKWLYDVTTIENEL 86
Y+ T ++ E +R ++ L+ + +R YEI P+VQK+L V IE EL
Sbjct: 8 YIDSAYPSTGSILENEQRSNLMNNILRIISDLQRSCEYEIPVLPHVQKYLNSVRYIE-EL 66
Query: 87 QKWLSDDNAQI 97
QK++ DDN ++
Sbjct: 67 QKFVEDDNYKL 77
>gb|AAH55185.1| Hypothetical protein MGC63650 [Danio rerio]
gi|41054383|ref|NP_956768.1| Ral-A exchange factor
RalGPS2 [Danio rerio]
Length = 510
Score = 35.4 bits (80), Expect = 8.4
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 29 YLTQHKKITTNLEEELERLKMIKQALQTRVETERRKGYEIA--PNVQKWLYDVTTIENEL 86
Y+ T ++ E +R ++ L+ + +R YEI P+VQK+L V IE EL
Sbjct: 211 YIDSAYPSTGSILENEQRSNLMNNILRIISDLQRSCEYEIPVLPHVQKYLNSVRYIE-EL 269
Query: 87 QKWLSDDNAQI 97
QK++ DDN ++
Sbjct: 270 QKFVEDDNYKL 280
>gb|AAD03672.1| resistance protein candidate RGC2K [Lactuca sativa]
gi|7489353|pir||T30559 resistance protein RGC2K -
garden lettuce
Length = 1715
Score = 35.4 bits (80), Expect = 8.4
Identities = 19/93 (20%), Positives = 43/93 (45%), Gaps = 3/93 (3%)
Query: 1 MDCLTELGKETVTKLGELVVESTMKHFKYLTQHKKITTNLEEELERLKMIKQALQTRVET 60
M+C+T + + ++ +H L + + ++ + L K ++ R
Sbjct: 1 MECITGIFSNP---FAQCLIAPVKEHLCLLIFYTQYVGDMLTAMTELNAAKDIVEERKNQ 57
Query: 61 ERRKGYEIAPNVQKWLYDVTTIENELQKWLSDD 93
K +E+ +V +WL DV TI ++++ L+D+
Sbjct: 58 NVEKCFEVPNHVNRWLEDVQTINRKVERVLNDN 90
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.362 0.160 0.608
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,233,142,108
Number of Sequences: 2540612
Number of extensions: 43586704
Number of successful extensions: 166095
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 166079
Number of HSP's gapped (non-prelim): 24
length of query: 887
length of database: 863,360,394
effective HSP length: 137
effective length of query: 750
effective length of database: 515,296,550
effective search space: 386472412500
effective search space used: 386472412500
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 80 (35.4 bits)
Medicago: description of AC149050.7