BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149039.3 + phase: 0 /pseudo
(2185 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 1105 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 517 e-144
ref|XP_462905.1| putative gag-pol precursor [Oryza sativa (japon... 450 e-124
emb|CAA56791.1| integrase [Nicotiana tabacum] gi|629693|pir||S47... 422 e-116
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 421 e-115
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 416 e-114
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 414 e-113
emb|CAE05339.2| OSJNBa0079M09.11 [Oryza sativa (japonica cultiva... 389 e-106
ref|NP_918342.1| putative polyprotein [Oryza sativa (japonica cu... 389 e-106
gb|AAV25049.1| putative polyprotein [Oryza sativa (japonica cult... 389 e-106
ref|XP_475948.1| putative polyprotein [Oryza sativa (japonica cu... 387 e-105
gb|AAU44282.1| putative polyprotein [Oryza sativa (japonica cult... 387 e-105
ref|NP_917356.1| putative polyprotein [Oryza sativa (japonica cu... 387 e-105
dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|983838... 385 e-104
gb|AAU44275.1| putative polyprotein [Oryza sativa (japonica cult... 385 e-104
dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris] 385 e-104
ref|NP_908712.1| putative polyprotein [Oryza sativa (japonica cu... 383 e-104
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 382 e-104
gb|AAV43845.1| putative polyprotein [Oryza sativa (japonica cult... 377 e-102
ref|XP_474973.1| OSJNBb0015G09.7 [Oryza sativa (japonica cultiva... 371 e-100
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 1105 bits (2859), Expect = 0.0
Identities = 508/718 (70%), Positives = 620/718 (85%), Gaps = 8/718 (1%)
Query: 1469 AIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVV 1528
AIYYLSKKFTDCETRY++LEKTCCALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK +
Sbjct: 1551 AIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPAL 1610
Query: 1529 TGKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKD 1588
TG++ARWQ++L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPDE+IMYLK KD
Sbjct: 1611 TGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKMKD 1670
Query: 1589 CEEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEY 1648
C+EPL++EGPDP+ KW L+FDGAVN G G+GAV+++P+G H+PF+AR+ F+ TNN AEY
Sbjct: 1671 CKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLTFDVTNNEAEY 1730
Query: 1649 EACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVE 1708
EACI GIEEAID+RIK LDI+GDSALV+NQ+ G+W T+ LIPYRDY RR+LT+F KV+
Sbjct: 1731 EACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVK 1790
Query: 1709 LHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVD 1768
L+H+PRDENQMADALATLSSM +VN WN VP + V RLERP++VFA V V+D
Sbjct: 1791 LYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESV-------VID 1843
Query: 1769 YKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLD-GDILYKRNYDMVLLRCVDEH 1827
KPWYYDIK FL ++EYP GASK DKKTLRRL F L+ D+LYKRN+DMVLLRC+D
Sbjct: 1844 EKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFDMVLLRCMDRP 1903
Query: 1828 EAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHV 1887
EA+ LM +VH+G+F THA GH M++KLLRAGYYWM ME DC+++ARKCHKCQIYAD++HV
Sbjct: 1904 EADMLMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHKCQIYADRVHV 1963
Query: 1888 PPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQVV 1947
PP LNV++SPWPF+MWGIDMIG+IEP ASNGH FILVAIDYFTKWVEAASY N+TKQVV
Sbjct: 1964 PPSPLNVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAASYANITKQVV 2023
Query: 1948 AKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATN 2007
+FIK IICRYGVP +IITDNG+NLNN +++ LC++FKIEHHNSSPYRP+MNGAVEA N
Sbjct: 2024 TRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRPKMNGAVEAAN 2083
Query: 2008 KNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2067
KNIK+IV+KMV TYKDWHEMLP+ALHGYRT+VR+STGATP+SLVYGMEAVLP+EVEIPSL
Sbjct: 2084 KNIKKIVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAVLPVEVEIPSL 2143
Query: 2068 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGEL 2127
RV+++ KL EAEW ++R+++L+LIEE+R+ V GQ YQ RMK AFD+KV PR +++G+L
Sbjct: 2144 RVLLDVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKVRPRSYQIGDL 2203
Query: 2128 VLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2185
VLKR + D RGKWTPNYEGPYVVKK FSGGAL+LT MDG + P+PVN+D+VKKYF
Sbjct: 2204 VLKRILPPGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVNSDVVKKYF 2261
Score = 154 bits (390), Expect = 2e-35
Identities = 99/320 (30%), Positives = 152/320 (46%), Gaps = 9/320 (2%)
Query: 3 QLRTELASLREELAKAHDAMTALLAAQEQPAPVVSAAANVIPTATTDPRFTMPPGYPYGL 62
Q++TELA +R +A+ M + QE+ +V V P P +P G P
Sbjct: 3 QVQTELAEMRANMAQFMHMMQGVAQGQEELRALVQRQEAVTPP----PNQALPEGNPVHD 58
Query: 63 PPYYTANTGAGTSGTTSNG-PISGANLTP--VSTALTQAATTVTEPIVNTVPQFVHANAH 119
P G G + G + P + + A PIV+ +
Sbjct: 59 TPAAAIPVNNYAVGEELMGIRVDGQPIAPDAANARVIHAPARNRIPIVDRQEDLFTMFSE 118
Query: 120 RGSIATTGTMEERMEELAKELRREIKANRGNGDSIKTQDLCLVSKVDVPKKFKVPEFDKY 179
I +R + E R ++ G + ++ LV + +P KFK P FDKY
Sbjct: 119 DEDIPGRNDARDRKVDALAEKIRAMECQNSLGFDVT--NMGLVEGLRIPYKFKAPSFDKY 176
Query: 180 NGLTCPQNHIVKYVRKMSNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKDDVHTFDELAAA 239
NG +CP+ H+ Y RK+S Y D++ + ++ FQDSL + +WY L D + + +L A
Sbjct: 177 NGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKSDSIRCWRDLGEA 236
Query: 240 FKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEEEMTQTFLKTL 299
F Y N + P+R L+SL QK ESF+EYAQRWR AAR+ P + E E+T F+ TL
Sbjct: 237 FLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARVQPPMLERELTDMFIGTL 296
Query: 300 KKDYVERMIIAAPNNFSEMV 319
+ +++RM +FS++V
Sbjct: 297 QGVFMDRMGSCPFGSFSDVV 316
Score = 57.0 bits (136), Expect = 7e-06
Identities = 26/51 (50%), Positives = 38/51 (73%), Gaps = 2/51 (3%)
Query: 1421 NFEFPVHDAE--NEEDDDIPYEITRLLEQEGRAIQPHQEEIEIINFGIPTA 1469
+F+ P++ AE +EED ++P E+ RLL+QE R IQPHQEE+E++N G A
Sbjct: 1121 DFDNPIYQAEEESEEDCELPAELVRLLKQEERVIQPHQEELEVVNLGTEDA 1171
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 517 bits (1331), Expect = e-144
Identities = 290/751 (38%), Positives = 423/751 (55%), Gaps = 36/751 (4%)
Query: 1449 GRAIQPHQEEIEIINFGIPTAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNH 1508
G + H +E G A YYLS+ E Y+ +EK C AL +A K+LRHY++ H
Sbjct: 2147 GALLAQHNDE------GKEVACYYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAH 2200
Query: 1509 TTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDD 1568
LI+R DPI+Y+ + V+TG++ +W +L+ EYDI F QKAIKG LA+ LA P+ D
Sbjct: 2201 QIQLIARADPIRYVLSQPVLTGRLGKWALLMMEYDITFVPQKAIKGQALAEFLATHPMPD 2260
Query: 1569 YQPIEFDFPDEEIMYLKSKDCEEPLIDEGPDPNSKWGLVFDGA----VNAYGK-----GI 1619
P+ + PDEEI + ++ +W L FDGA +N G G
Sbjct: 2261 DSPLIANLPDEEIFTAELQE--------------QWELYFDGASRKDINPDGTPRRRAGA 2306
Query: 1620 GAVIVSPQGHHIPFTARILFE-CTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQ 1678
G V +PQG I + +L E C+NN AEYEA IFG+ A+ M ++ L +GDS L+I Q
Sbjct: 2307 GLVFKTPQGGVIYHSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQ 2366
Query: 1679 IKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV 1738
I +E +L+PY ARRL+ F +E+ H+PR +N ADALA L++ N
Sbjct: 2367 INNIYEVRKPELVPYYTVARRLMDKFEHIEVIHVPRSKNAPADALAKLAAALVFQGDNPA 2426
Query: 1739 PIIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLR 1798
I+ +R P+ + I + ++ N + + W + P +++ L+
Sbjct: 2427 QIVVEERWLLPAVLELIPEEVNIIITNSAEEEDWRQPFLDYFKHGSLPE--DPVERRQLQ 2484
Query: 1799 RLTSRFLLDGDILYKRNYDM-VLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRA 1857
R ++ +LYKR+Y VLLRCVD EA +++ +VH G H +G M +
Sbjct: 2485 RRLPSYIYKAGVLYKRSYGQEVLLRCVDRSEANRVLQEVHHGVCGGHQSGPKMYHSIRLV 2544
Query: 1858 GYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKAS 1917
GYYW + DC + A+ CH CQI+ + H PP L+ WPF WGID+IG I P +S
Sbjct: 2545 GYYWPGIMADCLKTAKTCHGCQIHDNFKHQPPAPLHPTVPSWPFDAWGIDVIGLINPPSS 2604
Query: 1918 NGHHFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNV 1977
GH FIL A DYF+KW EA V V F++ +II R+GVP +I +DN +
Sbjct: 2605 RGHRFILTATDYFSKWAEAVPLREVKSSDVINFLERHIIYRFGVPHRITSDNAKAFKSQK 2664
Query: 1978 VQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKRIVQKMVTTY-KDWHEMLPYALHGYR 2036
+ E++KI+ + S+ Y PQ NG EA NK + +I++K V + +DWH+ L AL YR
Sbjct: 2665 IYRFMEKYKIKWNYSTGYYPQANGMAEAFNKTLGKILKKTVDKHRRDWHDRLYEALWAYR 2724
Query: 2037 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRM 2096
TVR+ T ATP+SLVYG EAVLPLE+++PSLRV + +L++ E + R+ +L+ +EE+R+
Sbjct: 2725 VTVRTPTQATPYSLVYGNEAVLPLEIQLPSLRVAIHDELTKDEQIRLRFQELDAVEEERL 2784
Query: 2097 DAVARGQSYQARMKTAFDKKVHPREFKVGE--LVLKRRISQQPDPRGKWTPNYEGPYVVK 2154
A+ + Y+ M A+DK V R F+ GE LVL+R I +GK+ P +EGPYV++
Sbjct: 2785 GALQNLELYRQNMVRAYDKLVKQRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIE 2844
Query: 2155 KAFSGGALILTHMDGVELPNPVNADIVKKYF 2185
+A+ GGA L G + P+N +KKYF
Sbjct: 2845 QAYDGGAYQLIDHQGSQPMPPINGRFLKKYF 2875
>ref|XP_462905.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|15217332|gb|AAK92670.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1262
Score = 450 bits (1158), Expect = e-124
Identities = 249/683 (36%), Positives = 378/683 (54%), Gaps = 36/683 (5%)
Query: 1449 GRAIQPHQEEIEIINFGIPTAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNH 1508
G + H +E G A YYLS+ E Y+ +EK C AL +A K+LRHY++ H
Sbjct: 601 GALLAQHNDE------GKEVACYYLSRTMVGAERNYSPIEKLCLALIFALKKLRHYMLTH 654
Query: 1509 TTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDD 1568
LI+ +DPI+Y+ + ++ G++ +W +L+ E+DI + QKA+KG LA+ LA P+ D
Sbjct: 655 QIQLIATVDPIRYVLSQPLLAGRLGKWALLMMEFDITYVPQKAVKGQALAEFLAAHPVPD 714
Query: 1569 YQPIEFDFPDEEIMYLKSKDCEEPLIDEGPDPNSKWGLVFDGAVNAYGK---------GI 1619
P+ + PDE++ +++ EP W L FDGA G
Sbjct: 715 DSPLITELPDEDVFTIET----EP----------SWELCFDGASRTENDRDGTPRKRAGA 760
Query: 1620 GAVIVSPQGHHIPFTARILFE-CTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQ 1678
G V +PQG I + +L E C+NN AEYEA IFG+ A+ M ++ + +YGDS L++ Q
Sbjct: 761 GLVFKTPQGGVIYHSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSIRVYGDSQLIVQQ 820
Query: 1679 IKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV 1738
I +E +L+PY ARRL+ F +E+ H+PR N ADALA L++ +
Sbjct: 821 INDIYEVLKQELVPYYSAARRLMEMFGHIEVMHVPRSRNAPADALAKLAAALVLPQGGPT 880
Query: 1739 PIIKVQRLERPSHVFAIGDV--IDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQDKKT 1796
+ +R P+ + + + +D W + P + +++
Sbjct: 881 QVNVEERWLLPAVLELLPNEYEVDTVMAAAAKEDDWRVPFLNYFRHGSLPDNSV--ERRQ 938
Query: 1797 LRRLTSRFLLDGDILYKRNYDM-VLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLL 1855
L+R ++ + Y+R+Y VLLRCVD EA++ + +VH G H +G M +
Sbjct: 939 LQRRLPSYVYKSGVSYRRSYGQEVLLRCVDRLEADKALQEVHHGVCGGHQSGPKMYHSIR 998
Query: 1856 RAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPK 1915
AGYYW + DC + A+ CH CQI+ D H+PP L+ WPF WGID+IG I+P
Sbjct: 999 LAGYYWPEIMADCLKVAKSCHGCQIHGDFKHLPPVPLHPTVPAWPFEAWGIDVIGPIDPP 1058
Query: 1916 ASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 1975
+S GH FI DYF+KW EA S V V F++ +II R+GVP +I +DNG +
Sbjct: 1059 SSRGHRFIFAITDYFSKWAEAVSLREVKTDNVISFLERHIIYRFGVPHRISSDNGKAFKS 1118
Query: 1976 NVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKRIVQKMVTTY-KDWHEMLPYALHG 2034
+ +Q ++KI + S+ Y PQ NG +EA NK + +I++K+V + +DWH+ L AL
Sbjct: 1119 HKMQRFIAKYKIRWNYSTGYYPQANGMIEAFNKTLGKILKKVVNRHRRDWHDHLFEALWA 1178
Query: 2035 YRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEK 2094
YR TVR+ T TP+SLVYG EAVLPLEVE+PSLRV + ++++ E + R+ +L+ +EE
Sbjct: 1179 YRVTVRTPTQCTPYSLVYGSEAVLPLEVEVPSLRVAIHEEITQDEQVRLRFQELDTLEEG 1238
Query: 2095 RMDAVARGQSYQARMKTAFDKKV 2117
R+ AV + Y+ M A++K V
Sbjct: 1239 RLQAVQNLELYRQNMVRAYNKLV 1261
>emb|CAA56791.1| integrase [Nicotiana tabacum] gi|629693|pir||S47444 probable
integrase - common tobacco (fragment)
Length = 382
Score = 422 bits (1085), Expect = e-116
Identities = 196/342 (57%), Positives = 261/342 (76%), Gaps = 2/342 (0%)
Query: 1844 HATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSM 1903
H G +S+K+LRAGY+WM ME DC ++ +KCH+CQIYAD + VPP+ LN S+PWPF+
Sbjct: 26 HMNGFVLSKKILRAGYFWMTMETDCIRYVQKCHQCQIYADMMRVPPNKLNATSAPWPFAA 85
Query: 1904 WGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPS 1963
WG+D+IG IEP ASN H FILVAIDYFTKWVEAASY VTK+VV F+++ I+CR+ VP
Sbjct: 86 WGMDIIGPIEPTASNWHKFILVAIDYFTKWVEAASYKVVTKKVVTDFVRDCIVCRFEVPE 145
Query: 1964 KIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKNIKRIVQKMVTTYKD 2023
IITDN NL++ +++A+C+ FKI+H NS+ Y PQMNG VEA NKNIK+I++KMV +K+
Sbjct: 146 SIITDNAANLHSALMKAMCDTFKIKHKNSTAYMPQMNGVVEAANKNIKKILRKMVDNHKE 205
Query: 2024 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2083
WHE LP+AL GY T V +S GATP+ LVY EAV+ +EVEI SLR+I E LS+AEW +S
Sbjct: 206 WHEKLPFALLGYCTIVCTSIGATPYLLVYSTEAVIHVEVEITSLRIIQEDVLSDAEWIRS 265
Query: 2084 RYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKW 2143
RY+QL+LI+ KR+ V GQ Y RM AF+K+V PR+F G+LVLKR Q + +GK+
Sbjct: 266 RYEQLSLIDGKRV--VCHGQLYHNRMSRAFNKRVKPRQFASGQLVLKRIFPHQDEAKGKF 323
Query: 2144 TPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2185
+PN++GPY+V + +GG LIL +DG P P+N+D+VK+Y+
Sbjct: 324 SPNWQGPYMVHRVLTGGTLILAEIDGEVWPKPINSDVVKRYY 365
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 421 bits (1083), Expect = e-115
Identities = 190/261 (72%), Positives = 233/261 (88%)
Query: 1469 AIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVV 1528
AIYYLSKKFTDCETRY++LEKTCCALAWAA+RLR Y++NHTT LIS+MDP+KYIFEK +
Sbjct: 1553 AIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDPVKYIFEKPAL 1612
Query: 1529 TGKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKD 1588
TG++ARWQ++L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPDE+IMYLK KD
Sbjct: 1613 TGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPDEDIMYLKVKD 1672
Query: 1589 CEEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEY 1648
CEEPL++EGPDP+ KW L+FDGAVN G G+GAV+++P+G HIPF+AR+ F+ TNN AEY
Sbjct: 1673 CEEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHIPFSARLTFDVTNNEAEY 1732
Query: 1649 EACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVE 1708
EACI GIEEAID+RIK LDIYGDSALV+NQ+ G+W T+ LIPYRDY RR+LT+F KV
Sbjct: 1733 EACIMGIEEAIDLRIKTLDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTRRILTFFKKVR 1792
Query: 1709 LHHIPRDENQMADALATLSSM 1729
L+H+PRDENQMADALATLSSM
Sbjct: 1793 LYHVPRDENQMADALATLSSM 1813
Score = 149 bits (377), Expect = 8e-34
Identities = 100/330 (30%), Positives = 156/330 (46%), Gaps = 28/330 (8%)
Query: 3 QLRTELASLREELAKAHDAMTALLAAQEQPAPVVSAAANVIPTATTDPRFTMPPGYPYG- 61
Q++ ELA ++ +A+ + M + QE+ +V IP P P G P
Sbjct: 3 QVQAELAEMKANMAQFMNMMQGVAQGQEELRALVQRQEAAIPPVNHAP----PEGGPVNG 58
Query: 62 -----LPPYYTANTGAGTSGTTSNGPISGANLTPVSTALTQAATTVTEPIVNTVP----- 111
P G G NG P++ + A V P N P
Sbjct: 59 NNVAAAVPINNYAVGDELGGIRINGQ-------PIAPDVANARA-VRAPARNPAPIVDRQ 110
Query: 112 --QFVHANAHRGSIATTGTMEERMEELAKELRREIKANRGNGDSIKTQDLCLVSKVDVPK 169
F + + + +++ LA+++R N D ++ LV + +P
Sbjct: 111 EDMFSLLSEDEDVLGRVDERDRKVDALAEKIRAMECQNSLGFD---VTNMGLVEGLRIPY 167
Query: 170 KFKVPEFDKYNGLTCPQNHIVKYVRKMSNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKDD 229
KFK P FDKYNG +CP+ H+ Y RK+S Y D++ + ++ FQDSL + +WY L +D
Sbjct: 168 KFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELKRDS 227
Query: 230 VHTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARITPALDEE 289
+ + +L AF Y N + P+R L+SL QK ESF+EYAQRWR AAR+ P + E
Sbjct: 228 IRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPMLER 287
Query: 290 EMTQTFLKTLKKDYVERMIIAAPNNFSEMV 319
E+T F+ TL+ +++RM +FS++V
Sbjct: 288 ELTDMFIGTLQGVFMDRMGSCPFVSFSDVV 317
Score = 55.1 bits (131), Expect = 3e-05
Identities = 26/51 (50%), Positives = 36/51 (69%), Gaps = 2/51 (3%)
Query: 1421 NFEFPVHDAE--NEEDDDIPYEITRLLEQEGRAIQPHQEEIEIINFGIPTA 1469
+F P++ AE +EED ++P E+ RLL QE R IQPHQEE+E++N G A
Sbjct: 1123 DFGNPIYQAEEESEEDCELPAELVRLLRQEERVIQPHQEELEVVNLGTEDA 1173
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 416 bits (1070), Expect = e-114
Identities = 249/718 (34%), Positives = 380/718 (52%), Gaps = 38/718 (5%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
IYY+S+ D ETRY+ +E AL AA++LR Y H +++ P++ I K +T
Sbjct: 345 IYYVSRALADVETRYSKMELISLALRSAAQKLRPYFQAHPVIVLTDQ-PLRNILHKPDLT 403
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ +W + LSE+ I F+ + ++KG ++AD + +E+
Sbjct: 404 GRMLQWAIELSEFGIEFQPRLSMKGQVMADFV----------LEYS-------------- 439
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
+P EG W L DGA + G G+G ++ SP G H+ R+ F +NN AEYE
Sbjct: 440 RKPGQHEGSRKKEWWTLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYE 499
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
A + G++ A+ + + L I+ DS LV+ ++ E+E A++ Y R L FT+ +
Sbjct: 500 AILSGLDLALALSVSKLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTI 559
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY 1769
I R +N+ ADALA +++ + +PI VQ S + + D
Sbjct: 560 EKIKRADNRRADALAGIAASLSIKEAILLPI-HVQTNPSVSEI----SICSTTEAPQADD 614
Query: 1770 KPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVDEHEA 1829
+ W DI +++ + P G KQ K +R +RF L G LYKR++ LRC+ EA
Sbjct: 615 QEWMNDITEYIRTGTLP-GDPKQAHK-VRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEA 672
Query: 1830 EQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPP 1889
+ ++ ++H+G + H+ G +++ + GYYW M+ + + ++C KCQ YA H+P
Sbjct: 673 QYVLAELHEGIYGNHSGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPS 732
Query: 1890 HALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAK 1949
L IS PWPF+ WG+D++ R P A F+LVA DYF+KWVEA +Y + + V K
Sbjct: 733 TTLKSISGPWPFAQWGMDIV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTK 791
Query: 1950 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKN 2009
F+ NIICR+G+P II DNG ++ + C E I + S+P PQ NG EATNK
Sbjct: 792 FVWKNIICRFGIPQTIIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKT 851
Query: 2010 IKRIVQKMVTTYK-DWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2068
+ ++K + K W E LP L YRTT TG TPF+L YGM+AV+P+E+ +P++
Sbjct: 852 LITALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIW 911
Query: 2069 VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGELV 2128
AK S+A R L+ +E R A R YQ R +++KV PR K G LV
Sbjct: 912 T-NAAKQSDANMQLGR--NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLV 968
Query: 2129 LKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2185
L++ + GK+ N+EGPY+V KA GA L +DG L P N +K+Y+
Sbjct: 969 LRKFFENTTEVGAGKFQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 414 bits (1064), Expect = e-113
Identities = 243/719 (33%), Positives = 378/719 (51%), Gaps = 59/719 (8%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
++YLS++ + ETRY+ +EK C L ++ RLRHYL+++ +I + D +KY+ ++
Sbjct: 911 VFYLSRRLLNAETRYSPVEKLCLCLYFSCTRLRHYLLSNECTVICKADVVKYMLSAPILK 970
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G+I +W L+E+D+ +++ KAIKG +A+ + D+ D+ I
Sbjct: 971 GRIGKWIFSLTEFDLRYESPKAIKGQAIANFIV------------DYRDDSI-------- 1010
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
G W L FDG+V +G GIG VI+SP+G F I TNN AEYE
Sbjct: 1011 -------GSVEVVPWTLFFDGSVCTHGCGIGLVIISPRGACFEFAYTIKPYATNNQAEYE 1063
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
A + G++ ++ ++I GDS LVI+Q+ GE+E + LI Y + + L+ F V L
Sbjct: 1064 AVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEYECKNDTLIVYNEKCQELMREFRLVTL 1123
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY 1769
H+ R++N A+ LA +S +++ +IK ++E V+
Sbjct: 1124 KHVSREQNIEANDLAQGASGYKL-------MIKHVQIEVA----------------VITA 1160
Query: 1770 KPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVDEHEA 1829
W Y + Q+L S+ + LR +++L D LY R D VLL+C+ +A
Sbjct: 1161 DDWRYYVYQYLQD------PSQSASRKLRYKALKYILLDDELYYRTIDGVLLKCLSTDQA 1214
Query: 1830 EQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPP 1889
+ + +VH+G TH + H M L AGY+W M DC+++ + C CQ + P
Sbjct: 1215 KVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPTMLEDCFRYYKGCQDCQKFGAIQRAPA 1274
Query: 1890 HALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAK 1949
A+N I PWPF WGIDMIG I P +S GH FILVA DYFTKWVEA V +
Sbjct: 1275 SAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFILVATDYFTKWVEAIPLKKVDSGDAIQ 1334
Query: 1950 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKN 2009
F++ +II R G+P I TD G+ ++ + I+ NSSPY Q NG EA+NK+
Sbjct: 1335 FVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFADSMGIKLLNSSPYYAQANGQAEASNKS 1394
Query: 2010 IKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLR 2068
+ +++++ ++ Y + WH L AL YR S P+ LVY +A+LP EV I S R
Sbjct: 1395 LIKLIKRKISDYPRQWHTRLAEALWSYRMACHGSIQVPPYKLVYRHKAILPWEVRIGSRR 1454
Query: 2069 VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKVGELV 2128
++ L+ E+ D+ + + R+ A+A+ + R+ ++KKV P++F GEL+
Sbjct: 1455 TELQNDLTADEYSNLMADEREDLVQSRLRALAKVIKDKERVTRHYNKKVVPKDFSEGELI 1514
Query: 2129 LK--RRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2185
K I + GKW+PN+EGP+ + K S GA +L +DG +N +KKY+
Sbjct: 1515 WKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKGAYMLQGLDGEVYDRALNGKYLKKYY 1573
>emb|CAE05339.2| OSJNBa0079M09.11 [Oryza sativa (japonica cultivar-group)]
gi|50922715|ref|XP_471718.1| OSJNBa0079M09.11 [Oryza
sativa (japonica cultivar-group)]
Length = 2028
Score = 389 bits (999), Expect = e-106
Identities = 240/738 (32%), Positives = 376/738 (50%), Gaps = 51/738 (6%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
+Y++S+ D +TRY +K A+ A+++LRHY H +++ P+ I T
Sbjct: 1319 VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1377
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ +W + LSE+D+ F+ + AIK LAD +A P E + +
Sbjct: 1378 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWT-----------PAPETVSIPEAST 1426
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
+ + + + W + FDG+++ G G G ++SP G + + R+ F TNNMAEYE
Sbjct: 1427 DPSQLPQ----TAHWVMQFDGSLSLQGAGAGVTLISPNGDVLRYLVRLDFRATNNMAEYE 1482
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
+ G+ A + I+ L + GDS LV+NQ+ E+ ++ Y RR+ +F +EL
Sbjct: 1483 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIEL 1542
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPS--------------HVFAI 1755
H+PR +N +AD L+ L+S + P +RL +PS H +
Sbjct: 1543 RHVPRRDNMIADELSRLAS----SRAQTPPGAFEERLTQPSARPDPSGETDAPDRHPRPV 1598
Query: 1756 GDVIDQAGENV---VDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILY 1812
G E+V + W +I+ +L + P ++ + ++R++ R++L LY
Sbjct: 1599 GVQASGPEESVPSSLRLIAWISEIQTYLTDKTLPE--DREGSERVQRISKRYVLVEGTLY 1656
Query: 1813 KRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHA 1872
+R + +LL+C+ + + +L+ D+H+G H+ T+ K R G+YW +D
Sbjct: 1657 RRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLV 1716
Query: 1873 RKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTK 1932
R+C CQ +A +IH P AL +I WPF++WG+D++G + +A G ++ VAID FTK
Sbjct: 1717 RRCRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFK-RAPGGFEYLYVAIDKFTK 1775
Query: 1933 WVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNS 1992
W EA + K KFIK I R+GVP++IITDNGT + + CE+ I+ +
Sbjct: 1776 WPEAYPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFA 1834
Query: 1993 SPYRPQMNGAVEATNKNI-KRIVQKMVTTYK----DWHEMLPYALHGYRTTVRSSTGATP 2047
SP P+ NG VE N I K + K K W E LP L RTT +TG TP
Sbjct: 1835 SPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETP 1894
Query: 2048 FSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQA 2107
F LVYG EAVLP E+ + S R M EA+ Q R D L+ +EE+R A R YQ
Sbjct: 1895 FFLVYGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQ 1951
Query: 2108 RMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHM 2167
++ + V R V +LVL+R Q K +P +EGPY V G++ L
Sbjct: 1952 SLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPIWEGPYRVIGVPRPGSVRLATG 2009
Query: 2168 DGVELPNPVNADIVKKYF 2185
DG ELPNP N + +++++
Sbjct: 2010 DGTELPNPWNIEHLRRFY 2027
>ref|NP_918342.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 389 bits (998), Expect = e-106
Identities = 238/734 (32%), Positives = 374/734 (50%), Gaps = 43/734 (5%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
+Y++S+ D +TRY +K A+ A+++LRHY H +++ P+ I T
Sbjct: 1321 VYFISETLRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1379
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ +W + LSE+D+ F+ + AIK LAD +A ++ P P+ M S +
Sbjct: 1380 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVA-----EWTPA----PETVSMPEASTNL 1430
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
+ + W + FDG+++ G G G + SP G + + R+ F TNNMAEYE
Sbjct: 1431 SQL------PQTAHWVMQFDGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYE 1484
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
+ G+ A + I+ L + GDS LV+NQ+ E+ ++ Y RR+ +F +EL
Sbjct: 1485 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMNAYVRQVRRMERHFDGIEL 1544
Query: 1710 HHIPRDENQMADALATLSSM------------FRVNHWNDVPIIKVQRLERPSHVFAI-G 1756
H+PR +N +AD L+ L+S P+ + +RP +
Sbjct: 1545 RHVPRRDNMIADELSRLASSRAQTPPGAFEERLTQPSARPNPLGETDAPDRPPRAVGVQA 1604
Query: 1757 DVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNY 1816
++ + N + W +I+ +L + P +Q + ++R++ R++L LY+R
Sbjct: 1605 SGLEGSAPNSLRLIAWISEIQTYLTDKTLPE--DRQGSERVQRISKRYVLVEGTLYRRAA 1662
Query: 1817 DMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCH 1876
+ +LL+C+ + + +L+ D+H+G H+ T+ K R G+YW +D R+C
Sbjct: 1663 NGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRRCR 1722
Query: 1877 KCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEA 1936
CQ +A +IH P AL +I WPF++WG+D++G + +A G ++ VAID FTKW EA
Sbjct: 1723 ACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFK-RALGGFEYLYVAIDKFTKWPEA 1781
Query: 1937 ASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYR 1996
+ K KFIK I R+GVP++IITDNGT + + CE+ I+ +SP
Sbjct: 1782 YPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPAH 1840
Query: 1997 PQMNGAVEATNKNI-KRIVQKMVTTYK----DWHEMLPYALHGYRTTVRSSTGATPFSLV 2051
P+ NG VE N I K + K K W E LP L RTT +TG TPF LV
Sbjct: 1841 PRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLV 1900
Query: 2052 YGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKT 2111
YG EAVLP E+ + S R M EA+ Q R D L+ +EE+R A R YQ ++
Sbjct: 1901 YGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRR 1957
Query: 2112 AFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVE 2171
+ V R V +LVL+R Q K +P +EGPY V G++ L DG E
Sbjct: 1958 YHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPIWEGPYRVIGVPRPGSVRLATGDGTE 2015
Query: 2172 LPNPVNADIVKKYF 2185
LPNP N + +++++
Sbjct: 2016 LPNPWNIEHLRRFY 2029
>gb|AAV25049.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1869
Score = 389 bits (998), Expect = e-106
Identities = 246/751 (32%), Positives = 375/751 (49%), Gaps = 59/751 (7%)
Query: 1443 RLLEQEGRAIQPHQEEIEIINFGIPTAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLR 1502
RL E+ R P +E+ + + +Y++S+ D +TRY +K A+ A+++LR
Sbjct: 1169 RLGEERPRDAAPSEEDRP--HRKVQRPVYFVSEALRDAKTRYPQAQKMLYAILMASRKLR 1226
Query: 1503 HYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHLA 1562
HY H +++ P+ I TG++ +W + LSE+D+ F+ + AIK LAD +A
Sbjct: 1227 HYFQAHRVTVVTSY-PLGQILHNREGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVA 1285
Query: 1563 YQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIDEGPDP---NSKWGLVFDGAVNAYGKGI 1619
P E++ + P GP + W + FDG+++ G G
Sbjct: 1286 EWT-----------PAPELVSV-------PEASSGPSQLPHTAHWVMQFDGSLSLQGAGA 1327
Query: 1620 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1679
G + SP G + + R+ F TNNMAEYE + G+ A + I+ L + GDS LV+NQ+
Sbjct: 1328 GVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQV 1387
Query: 1680 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVP 1739
E+ ++ Y RR+ +F +EL H+PR +N MAD L+ L+S + P
Sbjct: 1388 CKEYRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMMADELSRLAS----SRAQTPP 1443
Query: 1740 IIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRR 1799
+RL +PS + A W +I+ +L + P ++ + + R
Sbjct: 1444 GAFEERLAQPSALIA-----------------WIAEIQAYLTDKTLP--EDREGSERVHR 1484
Query: 1800 LTSRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGY 1859
++ R++L LY+R + +LL+C+ + L+ D+H+G H+ T+ K R G+
Sbjct: 1485 ISKRYVLVEGTLYRRAANGILLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFRQGF 1544
Query: 1860 YWMAMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNG 1919
YW +D R+C CQ +A +IH P AL I WPF++WG+ ++G +A G
Sbjct: 1545 YWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQTIPLSWPFAVWGLHILGPFR-RAPGG 1603
Query: 1920 HHFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQ 1979
++ VAID FTKW EA + K KFIK I R+GVP++IITDNGT + +
Sbjct: 1604 FEYLYVAIDKFTKWPEAYPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFG 1662
Query: 1980 ALCEEFKIEHHNSSPYRPQMNGAVEATNKNI-KRIVQKMVTTYK----DWHEMLPYALHG 2034
CE+ I+ +SP P+ NG VE N I K + K K W E LP L
Sbjct: 1663 DYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWA 1722
Query: 2035 YRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEK 2094
RTT +TG TPF LVYG EAVLP E+ + S R M EA+ Q R D L+ +EE+
Sbjct: 1723 NRTTPSRATGETPFFLVYGAEAVLPSELTLKSPRATM---YCEADQDQLRRDDLDYLEER 1779
Query: 2095 RMDAVARGQSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVK 2154
R A R YQ ++ V R V +LVL+R Q K +P +EGPY V
Sbjct: 1780 RRRAALRAARYQQSLRRYHQCHVRARSLCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVV 1837
Query: 2155 KAFSGGALILTHMDGVELPNPVNADIVKKYF 2185
G++ L DG ELPNP N + +++++
Sbjct: 1838 GVPRPGSIRLATGDGTELPNPWNIEHLRRFY 1868
Score = 45.1 bits (105), Expect = 0.028
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 168 PKKFKVPEFDKYNGLTCPQNHIVKYVRKMSNYKDNDSLMIHCFQDSLMEDAAEWYTSLSK 227
P +F+ +KY+G P + Y + +D +M + F +L A W +L
Sbjct: 107 PPRFRPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPP 166
Query: 228 DDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRW 275
VH++++L F ++ T +P E L ++ ++ +ES R Y QR+
Sbjct: 167 ASVHSWEDLCQQFTMNFQ-GTYPRPGEEADLHAVQRRDDESLRSYIQRF 214
>ref|XP_475948.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475133|gb|AAT44202.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1514
Score = 387 bits (994), Expect = e-105
Identities = 239/724 (33%), Positives = 367/724 (50%), Gaps = 62/724 (8%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
+Y++S+ D +TRY +K A+ A+++LRHY H +++ P+ I T
Sbjct: 844 VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 902
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ RW + LSE+D+ F+ + AIK LAD +A ++ P +
Sbjct: 903 GRVVRWAIELSEFDLRFEPRHAIKSQALADFVA-----EWTPAP-------------EPV 944
Query: 1590 EEPLIDEGPDP---NSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMA 1646
P GP + W + FDG+++ G G G + SP G + + R+ F TNNMA
Sbjct: 945 SAPEASSGPTQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMA 1004
Query: 1647 EYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTK 1706
EYE + G+ A + I+ L + GDS LV+NQ+ E++ ++ Y RR+ +F +
Sbjct: 1005 EYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYQCSDPQMDAYVRQVRRMERHFDR 1064
Query: 1707 VELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENV 1766
+EL H+PR +N +AD L+ L+S R + P F ++ + +
Sbjct: 1065 IELRHVPRRDNAVADELSRLAS---------------SRAQTPPGAFE-----ERLAQPL 1104
Query: 1767 VDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVDE 1826
+ W +I+ +L + P ++ + +RR++ R++L LY+R + VLL+C+
Sbjct: 1105 I---AWITEIQAYLADKTLPE--DREGSERVRRISKRYVLVEGTLYRRAANGVLLKCIPR 1159
Query: 1827 HEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIH 1886
+ +L+ DVH+G H+ T+ K R G+YW +D R+C CQ +A + H
Sbjct: 1160 EQGVELLADVHEGECGAHSVSRTLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHARQTH 1219
Query: 1887 VPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQV 1946
P AL I WPF++WG+D++GR A G ++ VA+D FTKW EA + K
Sbjct: 1220 QPAQALQTIPLSWPFAVWGLDILGR----APGGFEYLYVAVDKFTKWPEAYPVIKIDKHS 1275
Query: 1947 VAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAT 2006
KFI+ I R+GVP++IITDNGT + + CE+ I+ +SP P+ NG VE
Sbjct: 1276 ALKFIR-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPTHPRSNGQVERA 1334
Query: 2007 NKNI-KRIVQKMVTTYK----DWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 2061
N I K + K K W E LP L RTT +TG TPF LVYG EAVLP E
Sbjct: 1335 NAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSE 1394
Query: 2062 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPRE 2121
+ + S RV M EA+ Q R D L+ +EE+R A R YQ ++ + V R
Sbjct: 1395 LTLRSPRVTM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARS 1451
Query: 2122 FKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 2181
V +LVL+R Q K +P +EGPY V G++ L DG ELPNP N + +
Sbjct: 1452 LCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGDGTELPNPWNIEHL 1509
Query: 2182 KKYF 2185
+++
Sbjct: 1510 CRFY 1513
>gb|AAU44282.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1992
Score = 387 bits (994), Expect = e-105
Identities = 244/743 (32%), Positives = 375/743 (49%), Gaps = 61/743 (8%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
+Y++S+ D +TRY +K A+ A+++LRHY H +++ P+ I T
Sbjct: 1283 VYFVSEALRDAKTRYPQAQKMLYAVLMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1341
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ +W + LSE+D+ F+ + AIK LAD +A ++ P E+ S+
Sbjct: 1342 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVA-----EWTPAPEPVSIPEVNSDPSQ-- 1394
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
P W + FDG+++ G G G + SP G + + R+ F TNNMAEYE
Sbjct: 1395 --------PPHTGHWVMQFDGSLSLQGAGAGVTLTSPTGDVLRYLDRLDFRATNNMAEYE 1446
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
+ G+ A + I+ L + GDS LV+NQ+ E+ ++ Y RR+ +F +EL
Sbjct: 1447 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMEHHFDGIEL 1506
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY 1769
H+PR +N +AD L+ L+S + P +RL +PS A D + + G V D
Sbjct: 1507 RHVPRRDNMIADELSRLAS----SRAQTPPGAFEERLTQPS---ARPDPLGETG--VPDR 1557
Query: 1770 KP----------------------WYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLD 1807
P W +I+ +L + P ++ + ++R++ R++L
Sbjct: 1558 PPRPVGVQASGPEGSAPSSLRLIAWISEIQAYLTDKTLPE--DREGSERVQRISKRYVLV 1615
Query: 1808 GDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHD 1867
LY+R + +LL+C+ + + +L+ D+H+G H+ T+ K R G+YW +D
Sbjct: 1616 EGTLYRRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALND 1675
Query: 1868 CYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAI 1927
R+C CQ +A +IH P AL +I WPF++WG+D++G +A G ++ VAI
Sbjct: 1676 AVDLVRRCRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFR-RAPGGFEYLYVAI 1734
Query: 1928 DYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKI 1987
D FTKW EA + K KFIK I R+GVP++IITDNGT + + CE+ I
Sbjct: 1735 DKFTKWPEAYPVIKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGI 1793
Query: 1988 EHHNSSPYRPQMNGAVEATNKNI-KRIVQKMVTTYK----DWHEMLPYALHGYRTTVRSS 2042
+ +SP P+ NG VE N I K + K K W E LP L RTT +
Sbjct: 1794 KLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRA 1853
Query: 2043 TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARG 2102
TG TPF LVYG EAVLP E+ + S R M EA+ Q R D L+ +EE+R A R
Sbjct: 1854 TGETPFFLVYGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRA 1910
Query: 2103 QSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGAL 2162
YQ ++ + V R V +LVL+R Q K +P +EGPY V G++
Sbjct: 1911 ARYQQSLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVVGVPRPGSI 1968
Query: 2163 ILTHMDGVELPNPVNADIVKKYF 2185
L DG ELPNP N + +++++
Sbjct: 1969 RLATGDGTELPNPWNIEHLRRFY 1991
>ref|NP_917356.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2028
Score = 387 bits (993), Expect = e-105
Identities = 240/738 (32%), Positives = 373/738 (50%), Gaps = 51/738 (6%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
+Y++S+ D +TRY +K A+ A+++LRHY H +++ P+ I T
Sbjct: 1319 VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1377
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ +W + LSE+D+ F+ + AIK LAD +A P E + +
Sbjct: 1378 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWT-----------PAPETVSMPEAST 1426
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
+ + W + FDG+++ G G G + SP G + + R+ F TNNMAEYE
Sbjct: 1427 NPSQLPHA----AHWVMQFDGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYE 1482
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
+ G+ A + I+ L + GDS LV+NQ+ E+ ++ Y RR+ +F +EL
Sbjct: 1483 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIEL 1542
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPS--------------HVFAI 1755
H+PR +N +AD L+ L+S + P +RL +PS H +
Sbjct: 1543 RHVPRRDNMIADELSRLAS----SRAQTPPGAFEERLTQPSAQPDPLGETDAPNRHPRPV 1598
Query: 1756 GDVIDQAGENV---VDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILY 1812
G E+V + W +I+ +L + P ++ + ++R++ R++L LY
Sbjct: 1599 GVQASGPEESVPSSLRLIAWISEIQTYLTDKTLPE--DREGSERVQRISKRYVLVEGTLY 1656
Query: 1813 KRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHA 1872
+R + +LL+C+ + + +L+ D+H+G H+ T+ K R G+YW +D
Sbjct: 1657 RRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLV 1716
Query: 1873 RKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTK 1932
R+C CQ +A +IH P AL +I WPF++WG+D++G + +A G ++ VAID FTK
Sbjct: 1717 RRCRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFK-RAPGGFEYLYVAIDKFTK 1775
Query: 1933 WVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNS 1992
W EA + K KFIK I R+GVP++IITDNGT + + CE+ I+ +
Sbjct: 1776 WPEAYPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFA 1834
Query: 1993 SPYRPQMNGAVEATNKNI-KRIVQKMVTTYK----DWHEMLPYALHGYRTTVRSSTGATP 2047
SP P+ NG VE N I K + K K W E LP L RTT +TG TP
Sbjct: 1835 SPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETP 1894
Query: 2048 FSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQA 2107
F LVYG EAVLP E+ + S R M EA+ Q R D L+ +EE+R A R YQ
Sbjct: 1895 FFLVYGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQ 1951
Query: 2108 RMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHM 2167
++ + V R V +LVL+R Q K +P +EGPY V G++ L
Sbjct: 1952 SLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATG 2009
Query: 2168 DGVELPNPVNADIVKKYF 2185
DG ELPNP N + +++++
Sbjct: 2010 DGTELPNPWNIEHLRRFY 2027
>dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|9838386|ref|NP_063998.1|
hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 385 bits (988), Expect = e-104
Identities = 237/732 (32%), Positives = 389/732 (52%), Gaps = 56/732 (7%)
Query: 1459 IEIINFGIPTAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1518
+E I +P IY++S + E RY +LEK A+ AA++LR Y HT ++S P
Sbjct: 83 VERIKTQLP--IYFVSHVLNEAEQRYPLLEKMSLAVMIAARKLRPYFDAHTIQVLSN-HP 139
Query: 1519 IKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPD 1578
++ +K +G++ RW V LSE+++ +K + AIK LAD + +E + +
Sbjct: 140 LEKALQKLDTSGRLLRWAVELSEFEVEYKPRTAIKAQALADFI----------VEASYEE 189
Query: 1579 EEIMYLKSKDCEEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARIL 1638
EE +P W L DG+ G G G ++ SP+G+ F I
Sbjct: 190 EE------------------EPVGVWKLAVDGSAAQTGSGAGIIMTSPEGN--VFEYAIK 229
Query: 1639 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYAR 1698
F+ +NN AEYEA I GI+ + K + + DS LV +QI+GE+E + Y +
Sbjct: 230 FKASNNEAEYEAAIAGIKMCMAADAKKIRLQTDSQLVASQIRGEYEAREPAMQKYLQMIK 289
Query: 1699 RLLTYFTKVELHHIPRDENQMADALATLSS--MFRVNHWNDVPIIKVQRLERPSHVFAIG 1756
L +E+ +PR +N ADAL+ L+S + +N V +++ + +++ +
Sbjct: 290 DLAAQLISLEVVLVPRADNSQADALSKLASSTLQDLNRTVMVEVMEQRSIDKAERINC-- 347
Query: 1757 DVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNY 1816
V K WY DI+++ L+ + P + K ++R + +++ LYKR+
Sbjct: 348 ---------VTAQKEWYDDIQEYKLTGKLPD--DQTIAKAVKRDSHWYIIYQGQLYKRSD 396
Query: 1817 DMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCH 1876
LLRC E E M + +G H G +S +++R G YW M DC ++ +KC
Sbjct: 397 SYPLLRCTSESEKLPAMEEAPEGICGNHIGGKALSHEVMRRGNYWPTMVKDCLRYVKKCD 456
Query: 1877 KCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEA 1936
KCQ +A ++ P + L I +P PF+ WG+D++G AS G +++VA+DYFTKW+EA
Sbjct: 457 KCQKFAPVMNQPANDLCPILNPIPFAQWGMDILGPFTT-ASGGRKYLIVAVDYFTKWIEA 515
Query: 1937 ASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYR 1996
+ + V FI NII R+G+P I+ D+GT + + ++ C EFKI+ +++
Sbjct: 516 EPTKFIKARQVRSFIWKNIITRFGIPQCIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCH 575
Query: 1997 PQMNGAVEATNKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGME 2055
PQ NG EA NK I +QK + +K W +++P L RTT + +TG +PFSL +G E
Sbjct: 576 PQSNGQAEAANKQILLALQKKLEEHKGLWADLVPEVLWANRTTEKGATGKSPFSLAFGAE 635
Query: 2056 AVLPLEVEIPSLRV-IMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFD 2114
AV+P+EV +PS RV + +++E Q + L+ + E R+ A + + + RM ++
Sbjct: 636 AVVPIEVGLPSFRVQHYDPEVNE----QLMREALDQLPEMRLQAALKLAAQKNRMSRIYN 691
Query: 2115 KKVHPREFKVGELVLKRRIS-QQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELP 2173
++V R G+LVL+R + + + GK+T N+EGPY + + + G+ L ++G L
Sbjct: 692 RRVRHRPLTEGDLVLRRTAAVGKGNVHGKFTANWEGPYQICEQVAPGSYKLMTVEGEPLK 751
Query: 2174 NPVNADIVKKYF 2185
N NAD++KKYF
Sbjct: 752 NSFNADVLKKYF 763
>gb|AAU44275.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2027
Score = 385 bits (988), Expect = e-104
Identities = 243/743 (32%), Positives = 374/743 (49%), Gaps = 61/743 (8%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
+Y++S+ D +TRY +K A+ A+++LRHY H +++ P+ I T
Sbjct: 1318 VYFVSEALRDAKTRYPQAQKMLYAVLMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1376
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ +W + LSE+D+ F+ + AIK LAD +A ++ P E+ S+
Sbjct: 1377 GRVVKWTIELSEFDLHFEPRHAIKSQALADFVA-----EWTPAPEPVSIPEVNSDPSQ-- 1429
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
P W + FDG+++ G G G + SP G + + R+ F TNNMAEYE
Sbjct: 1430 --------PPYTGHWVMQFDGSLSLQGAGAGVTLTSPTGDVLRYLVRLDFRATNNMAEYE 1481
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
+ G+ A + I+ L + GDS LV+NQ+ E+ ++ Y RR+ +F +EL
Sbjct: 1482 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIEL 1541
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY 1769
H+PR +N +AD L+ L+S + P +RL +PS A D + + G V D
Sbjct: 1542 RHVPRRDNMIADELSRLAS----SRAQTPPGAFEERLTQPS---ARPDPLGETG--VPDR 1592
Query: 1770 KP----------------------WYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLD 1807
P W +I+ +L + P ++ + ++R++ R++L
Sbjct: 1593 PPRPVGVQASGPEGSAPSSLRLIAWISEIQAYLTDKTLPE--DREGSERVQRISKRYVLV 1650
Query: 1808 GDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHD 1867
LY+R + +LL+C+ + + +L+ D+H+G H+ T+ K R G+YW +D
Sbjct: 1651 EGTLYRRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALND 1710
Query: 1868 CYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAI 1927
R+C CQ +A +IH P AL +I WPF++WG+D++G +A G ++ VAI
Sbjct: 1711 AVDLVRRCRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFR-RAPGGFEYLYVAI 1769
Query: 1928 DYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKI 1987
D FTKW EA + K KFIK I R+GVP++IITDNGT + + CE+ I
Sbjct: 1770 DKFTKWPEAYPVIKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGI 1828
Query: 1988 EHHNSSPYRPQMNGAVEATNKNI-KRIVQKMVTTYK----DWHEMLPYALHGYRTTVRSS 2042
+ +SP P+ NG VE N I K + K K W E LP L RTT +
Sbjct: 1829 KLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPVVLWANRTTPSRA 1888
Query: 2043 TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARG 2102
T TPF LVYG EAVLP E+ + S R M EA+ Q R D L+ +EE+R A R
Sbjct: 1889 TRETPFFLVYGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRA 1945
Query: 2103 QSYQARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGAL 2162
YQ ++ + V R V +LVL+R Q K +P +EGPY V G++
Sbjct: 1946 ARYQQSLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGSI 2003
Query: 2163 ILTHMDGVELPNPVNADIVKKYF 2185
L DG ELPNP N + +++++
Sbjct: 2004 RLATGDGTELPNPWNIEHLRRFY 2026
Score = 45.8 bits (107), Expect = 0.016
Identities = 49/225 (21%), Positives = 90/225 (39%), Gaps = 28/225 (12%)
Query: 67 TANTGAGTSGTTSN--------GPISGANLTPVSTALTQAATTVTEPIVNTVPQFVHANA 118
T +GA T+G+ S+ + + TP ST T+ + ++ + N
Sbjct: 129 TKASGAATTGSASSRRRARRAAAAVRRSAATPSSTPSTREDLRGEQDARASIER--RRND 186
Query: 119 HRGSIATTGTMEERMEELAKELRREIKANRGNGDSIKTQD-------LCLVSKVDVPKKF 171
+ AT G R+ + RGN S+ + + V P +F
Sbjct: 187 RSAAHATEGASSSRVSP---------RHGRGNQPSVPPVGGVGCRAFVASLRNVRWPPRF 237
Query: 172 KVPEFDKYNGLTCPQNHIVKYVRKMSNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKDDVH 231
+ +KY+G P + Y + +D +M + F +L A W +L VH
Sbjct: 238 RPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMTLKGQARGWLMNLPPASVH 297
Query: 232 TFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESFREYAQRW 275
++++L F ++ T +P E L ++ ++ +ES R Y QR+
Sbjct: 298 SWEDLCQQFTMNFQ-GTYPRPGEEADLHAVQRRDDESLRSYIQRF 341
>dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 385 bits (988), Expect = e-104
Identities = 237/732 (32%), Positives = 389/732 (52%), Gaps = 56/732 (7%)
Query: 1459 IEIINFGIPTAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1518
+E I +P IY++S + E RY +LEK A+ AA++LR Y HT ++S P
Sbjct: 83 VERIKTQLP--IYFVSHVLNEAEQRYPLLEKMSLAVMIAARKLRPYFDAHTIQVLSN-HP 139
Query: 1519 IKYIFEKAVVTGKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPD 1578
++ +K +G++ RW V LSE+++ +K + AIK LAD + +E + +
Sbjct: 140 LEKALQKLDTSGRLLRWAVELSEFEVEYKPRTAIKAQALADFI----------VEASYEE 189
Query: 1579 EEIMYLKSKDCEEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARIL 1638
EE +P W L DG+ G G G ++ SP+G+ F I
Sbjct: 190 EE------------------EPVGVWKLAVDGSAAQTGSGAGIIMTSPEGN--VFEYAIK 229
Query: 1639 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYAR 1698
F+ +NN AEYEA I GI+ + K + + DS LV +QI+GE+E + Y +
Sbjct: 230 FKASNNEAEYEAAIAGIKMCMAADAKKIRLQTDSQLVASQIRGEYEAREPAMQKYLQMIK 289
Query: 1699 RLLTYFTKVELHHIPRDENQMADALATLSS--MFRVNHWNDVPIIKVQRLERPSHVFAIG 1756
L +E+ +PR +N ADAL+ L+S + +N V +++ + +++ +
Sbjct: 290 DLAAQLISLEVVLVPRADNSQADALSKLASSTLQDLNRTVMVEVMEQRSIDKAERINC-- 347
Query: 1757 DVIDQAGENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNY 1816
V K WY DI+++ L+ + P + K ++R + +++ LYKR+
Sbjct: 348 ---------VTAQKEWYDDIQEYKLTGKLPD--DQTIAKAVKRDSHWYIIYQGQLYKRSD 396
Query: 1817 DMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCH 1876
LLRC E E M + +G H G +S +++R G YW M DC ++ +KC
Sbjct: 397 SYPLLRCTSESEKLPAMEEAPEGICGNHIGGKALSHEVMRRGNYWPTMVKDCLRYVKKCD 456
Query: 1877 KCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEA 1936
KCQ +A ++ P + L I +P PF+ WG+D++G AS G +++VA+DYFTKW+EA
Sbjct: 457 KCQKFAPVMNQPANDLCPILNPIPFAQWGMDILGPFTT-ASGGRKYLIVAVDYFTKWIEA 515
Query: 1937 ASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYR 1996
+ + V FI NII R+G+P I+ D+GT + + ++ C EFKI+ +++
Sbjct: 516 EPTKFIKARQVRSFIWKNIITRFGIPQCIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCH 575
Query: 1997 PQMNGAVEATNKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGME 2055
PQ NG EA NK I +QK + +K W +++P L RTT + +TG +PFSL +G E
Sbjct: 576 PQSNGQAEAANKQILLALQKKLEEHKGLWADLVPEVLWANRTTEKGATGKSPFSLAFGAE 635
Query: 2056 AVLPLEVEIPSLRV-IMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFD 2114
AV+P+EV +PS RV + +++E Q + L+ + E R+ A + + + RM ++
Sbjct: 636 AVVPIEVGLPSFRVQHYDPEVNE----QLMREALDQLPEMRLQAALKLAAQKNRMSRIYN 691
Query: 2115 KKVHPREFKVGELVLKRRIS-QQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELP 2173
++V R G+LVL+R + + + GK+T N+EGPY + + + G+ L ++G L
Sbjct: 692 RRVRHRPLTEGDLVLRRTAAVGKGNVHGKFTANWEGPYQICEQVAPGSYKLMTVEGEPLK 751
Query: 2174 NPVNADIVKKYF 2185
N NAD++KKYF
Sbjct: 752 NSFNADVLKKYF 763
>ref|NP_908712.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2031
Score = 383 bits (983), Expect = e-104
Identities = 239/738 (32%), Positives = 372/738 (50%), Gaps = 51/738 (6%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
+Y++S+ D +TRY +K A+ A+++LRHY H +++ P+ I T
Sbjct: 1322 VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSY-PLGQILHNREGT 1380
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ +W + LSE+D+ F+ + AIK LAD +A P E + +
Sbjct: 1381 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWT-----------PAPETVSMPEAST 1429
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
+ + W + FDG+++ G G G + S G + + R+ F TNNMAEYE
Sbjct: 1430 NPSQLPHA----AHWVMQFDGSLSLQGAGAGVTLTSRNGDVLRYLVRLDFRATNNMAEYE 1485
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
+ G+ A + I+ L + GDS LV+NQ+ E+ ++ Y RR+ +F +EL
Sbjct: 1486 GLLAGLRVAAGLGIRRLLVLGDSQLVVNQVCKEYRCSDPQMDAYVRQVRRMERHFDGIEL 1545
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPS--------------HVFAI 1755
H+PR +N +AD L+ L+S + P +RL +PS H +
Sbjct: 1546 RHVPRRDNMIADELSRLAS----SRAQTPPGAFEERLTQPSARPDPSEETDAPDRHPRPV 1601
Query: 1756 GDVIDQAGENV---VDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILY 1812
G E+V + W +I+ +L + P ++ + ++R++ R++L LY
Sbjct: 1602 GVQASGPEESVPSSLRLIAWISEIQTYLTDKTLPE--DREGSERVQRISKRYVLVEGTLY 1659
Query: 1813 KRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHA 1872
+R + +LL+C+ + + +L+ D+H+G H+ T+ K R G+YW +D
Sbjct: 1660 RRAANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLV 1719
Query: 1873 RKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTK 1932
R+C CQ +A +IH P AL +I WPF++WG+D++G + +A G ++ VAID FTK
Sbjct: 1720 RRCRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFK-RAPGGFEYLYVAIDKFTK 1778
Query: 1933 WVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNS 1992
W EA + K KFIK I R+GVP++IITDNGT + + CE+ I+ +
Sbjct: 1779 WPEAYPVVKIDKHSALKFIK-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFA 1837
Query: 1993 SPYRPQMNGAVEATNKNI-KRIVQKMVTTYK----DWHEMLPYALHGYRTTVRSSTGATP 2047
SP P+ NG VE N I K + K K W E LP L RTT +TG TP
Sbjct: 1838 SPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETP 1897
Query: 2048 FSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQA 2107
F LVYG EAVLP E+ + S R M EA+ Q R D L+ +EE+R A R YQ
Sbjct: 1898 FFLVYGAEAVLPSELTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAALRAARYQQ 1954
Query: 2108 RMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHM 2167
++ + V R V +LVL+R Q K +P +EGPY V G++ L
Sbjct: 1955 SLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPIWEGPYRVIGVPRPGSVRLATG 2012
Query: 2168 DGVELPNPVNADIVKKYF 2185
DG ELPNP N + +++++
Sbjct: 2013 DGTELPNPWNIEHLRRFY 2030
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 382 bits (981), Expect = e-104
Identities = 248/727 (34%), Positives = 366/727 (50%), Gaps = 47/727 (6%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
I+Y SK + ETRY ++EK A+ +A++LR Y +HT +++ P++ +
Sbjct: 1147 IFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQ-PLRVALHSPSQS 1205
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G++ +W V LSEYDI F+ + A+K +LAD L PL + EE
Sbjct: 1206 GRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGEE--------- 1256
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
W L DG+ +A G GIG +VSP + + R+ F TNN+AEYE
Sbjct: 1257 --------------WSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYE 1302
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
I G+ A M+I + + DS L+ Q+ GE+E + K+ Y + + F +L
Sbjct: 1303 VLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKL 1362
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVP-IIKVQRLERPS-----HVFAIGDVIDQAG 1763
IPR +N ADALA L+ + +D+ II V+ +++PS V + +
Sbjct: 1363 SKIPRGDNAPADALAALA----LTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNA 1418
Query: 1764 ENVVDYKPWYYDIKQFLLSREYPPGASKQDKKTLRRL---TSRFLLDGDILYKRNYDMVL 1820
+ D W +I+ +L P DK T RRL +++ L + L K + +
Sbjct: 1419 PDPADPTDWRVEIRDYLSDGTLP-----SDKWTARRLRIKAAKYTLMKEHLLKVSAFGAM 1473
Query: 1821 LRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQI 1880
L C+ E ++M + H+G H+ G ++ KL + G+YW M DC KC +CQ
Sbjct: 1474 LNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQR 1533
Query: 1881 YADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYT 1940
+A IH P L +P+PF W +D++G + AS FILV DYFTKWVEA SY
Sbjct: 1534 HAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP--ASRQKRFILVMTDYFTKWVEAESYA 1591
Query: 1941 NVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMN 2000
+ V F+ IICR+G+P +IITDNG+ + + C +KI + S+P PQ N
Sbjct: 1592 TIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGN 1651
Query: 2001 GAVEATNKNIKRIVQKMVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 2059
G EATNK I ++K + K W + L L YRTT RS+T TPF+ YGMEA+ P
Sbjct: 1652 GQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAP 1711
Query: 2060 LEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHP 2119
EV SLR M K E + D+L+ +EE R A+ R Q+YQ +++KVH
Sbjct: 1712 AEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHN 1770
Query: 2120 REFKVGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNA 2178
R F VG+LVL++ + GK N+EG Y V K G L M G +P N+
Sbjct: 1771 RHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNS 1830
Query: 2179 DIVKKYF 2185
+K+Y+
Sbjct: 1831 MHLKRYY 1837
Score = 43.1 bits (100), Expect = 0.11
Identities = 27/113 (23%), Positives = 51/113 (44%), Gaps = 4/113 (3%)
Query: 175 EFDKYNGLTCPQNHIVKY---VRKMSNYKDN-DSLMIHCFQDSLMEDAAEWYTSLSKDDV 230
+ + YNG P+ + + + + DN D+ F + L A W++ L + +
Sbjct: 220 KLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSI 279
Query: 231 HTFDELAAAFKSHYGFNTRLKPNREFLRSLSQKKEESFREYAQRWRGAAARIT 283
+F +L ++F HY + + L S+SQ +ES R + R++ IT
Sbjct: 280 DSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNIT 332
>gb|AAV43845.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1207
Score = 377 bits (968), Expect = e-102
Identities = 241/739 (32%), Positives = 367/739 (49%), Gaps = 62/739 (8%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
+Y++S+ D +TRY +K A+ A+++LRHY H +++ P+ I T
Sbjct: 507 VYFVSEALRDAKTRYPQAQKMLYAILMASRKLRHYFQTHRVTVVTSY-PLGQILHNREGT 565
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLA-YQPLDDYQPIEFDFPDEEIMYLKSKD 1588
G++ +W + LSE+D+ F+ + AIK LAD +A + P + P+
Sbjct: 566 GRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWTPAPE--PVSI-------------- 609
Query: 1589 CEEPLIDEGPDP---NSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNM 1645
P GP + W + FDG+++ G G G + SP G + + R+ F TNNM
Sbjct: 610 ---PEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNM 666
Query: 1646 AEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFT 1705
AEYE + G+ A + I+ L + GDS LV+NQ+ E++ ++ Y RR+ +F
Sbjct: 667 AEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQVSKEYQCSDPQMDAYVRQVRRMERHFD 726
Query: 1706 KVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGEN 1765
+EL H+PR +N +AD L+ L+S + P +RL +PS D GE
Sbjct: 727 GIELRHVPRRDNAVADELSRLAS----SRAQTPPGAFEERLAQPS------ARPDPLGET 776
Query: 1766 VVDYKP--------------WYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDIL 1811
+P W +I+ +L + P ++ + ++R++ R++L L
Sbjct: 777 DAPERPLRPGSAPSSLRLIAWIAEIQAYLADKTLP--EDREGSERVQRISKRYVLVEGTL 834
Query: 1812 YKRNYDMVLLRCVDEHEAEQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQH 1871
Y+ + VLL C+ + +L+ +H+G H+ T+ K R G+YW +D
Sbjct: 835 YRHAANGVLLECIPREQGVELLAAIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDL 894
Query: 1872 ARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFT 1931
R+C CQ +A + H P AL I WPF+ WG+D++ R +A G ++ VAID FT
Sbjct: 895 VRQCRACQFHAKQTHQPAQALQTIPLSWPFADWGLDIL-RPFIRAPGGFEYLYVAIDKFT 953
Query: 1932 KWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHN 1991
KW EA + K KFI+ I R+GVP++IITDNGT + + CE+ I+
Sbjct: 954 KWPEAYPVIKIDKHSALKFIR-GITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCF 1012
Query: 1992 SSPYRPQMNGAVEATNKNI-KRIVQKMVTTYK----DWHEMLPYALHGYRTTVRSSTGAT 2046
+SP P+ NG VE N I K + K K W E LP L RTT +TG T
Sbjct: 1013 ASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGET 1072
Query: 2047 PFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQ 2106
PF LVYG EAVLP EV + S R M EA+ Q R D L+ +EE+R A R YQ
Sbjct: 1073 PFFLVYGAEAVLPSEVTLRSPRATM---YCEADQDQLRRDDLDYLEERRRRAAIRAARYQ 1129
Query: 2107 ARMKTAFDKKVHPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTH 2166
++ + V R V +LVL+R Q K +P +EGPY V G++ L
Sbjct: 1130 QSLRRYHQRHVRARSLCVDDLVLRR--VQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLAT 1187
Query: 2167 MDGVELPNPVNADIVKKYF 2185
DG ELPNP N + +++++
Sbjct: 1188 GDGTELPNPWNIEHLRRFY 1206
>ref|XP_474973.1| OSJNBb0015G09.7 [Oryza sativa (japonica cultivar-group)]
gi|38346888|emb|CAE03913.2| OSJNBb0015G09.7 [Oryza sativa
(japonica cultivar-group)]
Length = 1991
Score = 371 bits (953), Expect = e-100
Identities = 232/721 (32%), Positives = 357/721 (49%), Gaps = 44/721 (6%)
Query: 1470 IYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVT 1529
IY++S+ D +TRY ++K + ++L HY H+ +++ P+ I
Sbjct: 1309 IYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREAN 1367
Query: 1530 GKIARWQVLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDC 1589
G+IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1368 GRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH------ 1416
Query: 1590 EEPLIDEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYE 1649
W + FDG+ G G G V++SP G + + I F ++N+AEYE
Sbjct: 1417 --------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYE 1462
Query: 1650 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVEL 1709
A + G+ AI + IKHL + GDS LV+NQ+ EW ++ YR R+L F +EL
Sbjct: 1463 ALLHGLRIAISLGIKHLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLEL 1522
Query: 1710 HHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDY 1769
H+ R N+ AD LA S R +DV V+ L P+ + + +
Sbjct: 1523 SHVLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQVAGTHDVAMVE 1578
Query: 1770 KPWYYDIKQFLLSREYPPGASKQDKKTLRRLTSRFLLDGDILYKRNYDMVLLRCVDEHEA 1829
W + +FL S+E P K + + + R + ++L LYK++ +L RCV E
Sbjct: 1579 ADWRESLIRFLTSQELP--QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEG 1636
Query: 1830 EQLMHDVHDGTFRTHATGHTMSRKLLRAGYYWMAMEHDCYQHARKCHKCQIYADKIHVPP 1889
QL+ D+H G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1637 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 1696
Query: 1890 HALNVISSPWPFSMWGIDMIGRIEPKASNGHHFILVAIDYFTKWVEAASYTNVTKQVVAK 1949
L I WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1697 QELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARD 1755
Query: 1950 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEATNKN 2009
F +I+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE N
Sbjct: 1756 FF-ISIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGM 1814
Query: 2010 I-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2064
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1815 ILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEF 1874
Query: 2065 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAVARGQSYQARMKTAFDKKVHPREFKV 2124
SLR E + + R D L+ +EE R A+ R Y ++ ++ V R F V
Sbjct: 1875 ESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFLV 1931
Query: 2125 GELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2184
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + ++++
Sbjct: 1932 GDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1989
Query: 2185 F 2185
+
Sbjct: 1990 Y 1990
Score = 45.8 bits (107), Expect = 0.016
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 150 NGDSIKTQDLCLVSKVDVPKKFKVPEFDKYNGLTCPQNHIVKYVRKMSNYKDNDSLMIHC 209
+G + T DL +VD P FK +KY+G T P++ + Y + ++ M +
Sbjct: 416 DGVAAFTDDL---RRVDWPAGFKPTGIEKYDGTTNPESWLTVYGLAIRAAGGDNKAMANY 472
Query: 210 FQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFNTRLKPNREF-LRSLSQKKEESF 268
+L + A W L + + ++ EL F +++ T +P ++ L ++ QK ES
Sbjct: 473 LPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQ-GTFERPGTQYDLYNVIQKSGESL 531
Query: 269 REYAQRWRGAAARITPALDE 288
R+Y +R+ +I+ D+
Sbjct: 532 RDYIRRFSEQRNKISDITDD 551
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.340 0.148 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,377,958,597
Number of Sequences: 2540612
Number of extensions: 138885340
Number of successful extensions: 551253
Number of sequences better than 10.0: 4574
Number of HSP's better than 10.0 without gapping: 3687
Number of HSP's successfully gapped in prelim test: 889
Number of HSP's that attempted gapping in prelim test: 538261
Number of HSP's gapped (non-prelim): 8383
length of query: 2185
length of database: 863,360,394
effective HSP length: 144
effective length of query: 2041
effective length of database: 497,512,266
effective search space: 1015422534906
effective search space used: 1015422534906
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 83 (36.6 bits)
Medicago: description of AC149039.3