BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148996.1 - phase: 0
(141 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC47754.1| histone H2B [Euplotes crassus] gi|2149886|gb|AAC4... 57 7e-08
emb|CAA12230.1| histone H2B-2 [Lycopersicon esculentum] gi|74397... 57 9e-08
ref|NP_704076.1| histone h2b, putative [Plasmodium falciparum 3D... 57 1e-07
emb|CAH79547.1| histone h2b, putative [Plasmodium chabaudi] gi|5... 57 1e-07
emb|CAF95820.1| unnamed protein product [Tetraodon nigroviridis] 57 1e-07
gb|AAP80719.1| histone H2B protein [Griffithsia japonica] 56 2e-07
gb|AAB97163.1| histone H2B1 [Gossypium hirsutum] gi|7439759|pir|... 56 2e-07
emb|CAA42530.1| histone H2B [Triticum aestivum] gi|283025|pir||S... 56 2e-07
pir||HSKP22 histone H2B, gonadal - sandpaper limpet gi|122058|sp... 55 3e-07
gb|AAV84518.1| At5g59910 [Arabidopsis thaliana] gi|9757912|dbj|B... 55 4e-07
ref|XP_527996.1| PREDICTED: similar to Histone H2B [Pan troglody... 55 4e-07
gb|EAK94598.1| histone H2B [Candida albicans SC5314] gi|46435164... 55 4e-07
gb|AAB04688.1| histone H2B gi|1708107|sp|P54348|H2B5_MAIZE Histo... 55 4e-07
emb|CAA29059.1| Histone H2B-1 [Tetrahymena thermophila] gi|84350... 55 5e-07
emb|CAA29060.1| Histone H2B-2 [Tetrahymena thermophila] gi|84351... 55 5e-07
ref|XP_525086.1| PREDICTED: similar to Histone H2B F (H2B 291A) ... 55 5e-07
emb|CAA12233.1| histone H2B [Lycopersicon esculentum] gi|7439756... 55 5e-07
gb|EAK93555.1| histone H2B [Candida albicans SC5314] gi|46434099... 55 5e-07
dbj|BAD84179.1| histone H2B [Paramecium caudatum] 55 5e-07
gb|AAH76088.1| Zgc:92591 [Danio rerio] gi|50540518|ref|NP_001002... 55 5e-07
>gb|AAC47754.1| histone H2B [Euplotes crassus] gi|2149886|gb|AAC47753.1| histone
H2B [Euplotes crassus] gi|20138112|sp|O97484|H2B_EUPCR
Histone H2B
Length = 113
Score = 57.4 bits (137), Expect = 7e-08
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+RT F +IYRV K+VHP+ ++ +S+ +MN +ND+ KI E +K V + L
Sbjct: 20 KKRTETFSVYIYRVLKQVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYNKKHTLS 79
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ V+ L P LA+ A
Sbjct: 80 SREVQTAVRLLLPGELAKHA 99
>emb|CAA12230.1| histone H2B-2 [Lycopersicon esculentum] gi|7439753|pir||T06389
histone H2B-2 - tomato (fragment)
Length = 139
Score = 57.0 bits (136), Expect = 9e-08
Identities = 34/103 (33%), Positives = 63/103 (61%), Gaps = 8/103 (7%)
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E GSS K++ ++E +K +I++V K+VHPD+ I+ +S+ +MN +ND
Sbjct: 24 KAGKKLPKESGSSGADKKKKKSKKSIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFIND 83
Query: 58 MLHKIVEEVAKNVAALNQK-LLVERDLWVGVKELYPKYLARCA 99
+ K+ +E + +A +N+K + R++ V+ + P LA+ A
Sbjct: 84 IFEKLAQE-SSRLARINKKPTITSREIQTAVRLVLPGELAKHA 125
>ref|NP_704076.1| histone h2b, putative [Plasmodium falciparum 3D7]
gi|23498814|emb|CAD50891.1| histone h2b, putative
[Plasmodium falciparum 3D7]
Length = 123
Score = 56.6 bits (135), Expect = 1e-07
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 13 VGSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAA 72
+G KRRT F +I++V K+VHP+ +T +S+ +MN +ND+ ++V E + +
Sbjct: 21 LGPRHKRKRRTESFSLYIFKVLKQVHPETGVTKKSMNIMNSFINDIFDRLVTEATRLIRY 80
Query: 73 LNQKLLVERDLWVGVKELYPKYLARCA 99
++ L R++ V+ L P L++ A
Sbjct: 81 NKKRTLSSREIQTAVRLLLPGELSKHA 107
>emb|CAH79547.1| histone h2b, putative [Plasmodium chabaudi]
gi|56499238|emb|CAH98717.1| histone h2b, putative
[Plasmodium berghei] gi|23490271|gb|EAA22088.1| histone
H2B variant 1 [Plasmodium yoelii yoelii]
Length = 123
Score = 56.6 bits (135), Expect = 1e-07
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 13 VGSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAA 72
+G KRRT F +I++V K+VHP+ +T +S+ +MN +ND+ ++V E + +
Sbjct: 21 LGPRHKRKRRTESFSLYIFKVLKQVHPETGVTKKSMNIMNSFINDIFDRLVTEATRLIRY 80
Query: 73 LNQKLLVERDLWVGVKELYPKYLARCA 99
++ L R++ V+ L P L++ A
Sbjct: 81 NKKRTLSSREIQTAVRLLLPGELSKHA 107
>emb|CAF95820.1| unnamed protein product [Tetraodon nigroviridis]
Length = 124
Score = 56.6 bits (135), Expect = 1e-07
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 2 ASKKG-KNIILEVGSSSGTKRRTV---EFKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
A KKG K + + S G K+R E+ ++Y+V K+VHPD I+ +++ +MN +ND
Sbjct: 8 APKKGSKKAVTKTASKGGKKKRRTRKGEYAIYVYKVLKQVHPDTGISSKAMSIMNSFVND 67
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ +I E ++ + + R++ V+ L P LA+ A
Sbjct: 68 IFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHA 109
>gb|AAP80719.1| histone H2B protein [Griffithsia japonica]
Length = 124
Score = 56.2 bits (134), Expect = 2e-07
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+R+ + +IY+V K+VHP+ I+ +++ +MN ++D+ +I E AK N K L
Sbjct: 31 KKRSESYSIYIYKVLKQVHPETGISSKAMSIMNSFVDDLFERIATEAAKLATYNNSKTLT 90
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ V+ L P LA+ A
Sbjct: 91 SREIQTAVRLLLPGELAKHA 110
>gb|AAB97163.1| histone H2B1 [Gossypium hirsutum] gi|7439759|pir||T09722 histone
H2B1 - upland cotton gi|7387726|sp|O22582|H2B_GOSHI
Histone H2B
Length = 147
Score = 56.2 bits (134), Expect = 2e-07
Identities = 34/103 (33%), Positives = 64/103 (62%), Gaps = 8/103 (7%)
Query: 4 KKGKNIILEVGSSSGTKRR-----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
K GK + E G+++G K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND
Sbjct: 32 KAGKKLPKEGGAAAGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 91
Query: 58 MLHKIVEEVAKNVAALNQK-LLVERDLWVGVKELYPKYLARCA 99
+ K+ +E A +A N+K + R++ V+ + P LA+ A
Sbjct: 92 IFEKLAQE-ASRLARYNKKPTITSREIQTAVRLVLPGELAKHA 133
>emb|CAA42530.1| histone H2B [Triticum aestivum] gi|283025|pir||S22323 histone H2B -
wheat gi|122022|sp|P27807|H2B1_WHEAT Histone H2B
Length = 152
Score = 55.8 bits (133), Expect = 2e-07
Identities = 31/97 (31%), Positives = 56/97 (56%), Gaps = 3/97 (3%)
Query: 6 GKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKI 62
GK+ E G G K+ ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+
Sbjct: 42 GKSAAKEGGDKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKL 101
Query: 63 VEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
E AK + + R++ V+ + P LA+ A
Sbjct: 102 AGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHA 138
>pir||HSKP22 histone H2B, gonadal - sandpaper limpet
gi|122058|sp|P02284|H2B_PATGR Histone H2B, gonadal
Length = 121
Score = 55.5 bits (132), Expect = 3e-07
Identities = 28/98 (28%), Positives = 50/98 (50%)
Query: 2 ASKKGKNIILEVGSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHK 61
A K GK G +RR + +IY+V K+VHPD ++ +++ +MN +ND+ +
Sbjct: 9 AKKAGKAKAARSGDKKRKRRRKESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFER 68
Query: 62 IVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
I E ++ + + R++ V+ L P LA+ A
Sbjct: 69 IAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHA 106
>gb|AAV84518.1| At5g59910 [Arabidopsis thaliana] gi|9757912|dbj|BAB08359.1| unnamed
protein product [Arabidopsis thaliana]
gi|15238563|ref|NP_200799.1| histone H2B [Arabidopsis
thaliana] gi|16323079|gb|AAL15274.1| AT5g59910/mmn10_130
[Arabidopsis thaliana] gi|27735192|sp|P40283|H2B_ARATH
Histone H2B
Length = 150
Score = 55.1 bits (131), Expect = 4e-07
Identities = 30/101 (29%), Positives = 58/101 (56%), Gaps = 5/101 (4%)
Query: 4 KKGKNIILEVGSSSGTKRR----TVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDM 58
K GK + E G+ K++ +VE +K +I++V K+VHPD+ I+ +++ +MN +ND+
Sbjct: 36 KAGKKLPKEAGAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDI 95
Query: 59 LHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
K+ +E +K + + R++ V+ + P LA+ A
Sbjct: 96 FEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHA 136
>ref|XP_527996.1| PREDICTED: similar to Histone H2B [Pan troglodytes]
Length = 163
Score = 55.1 bits (131), Expect = 4e-07
Identities = 30/92 (32%), Positives = 50/92 (53%), Gaps = 6/92 (6%)
Query: 14 GSSSGTK------RRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVA 67
G SSG K RR + +IY+V K+VHPD+ I+ +++ +MN +ND+ ++ E A
Sbjct: 57 GRSSGNKKSKKRCRRKESYSMYIYKVLKQVHPDIGISAKAMSIMNSFVNDVFEQLACEAA 116
Query: 68 KNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ + L R++ V+ L P LA+ A
Sbjct: 117 RLAQYSGRTTLTSREVQTAVRLLLPGELAKHA 148
>gb|EAK94598.1| histone H2B [Candida albicans SC5314] gi|46435164|gb|EAK94552.1|
histone H2B [Candida albicans SC5314]
Length = 130
Score = 55.1 bits (131), Expect = 4e-07
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 14 GSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAAL 73
G+ TK R + +IY+V K+ HPD I+ +++ +MN +ND+ +I E +K +AA
Sbjct: 29 GAKKRTKARKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIASEASK-LAAY 87
Query: 74 NQKLLVE-RDLWVGVKELYPKYLARCA 99
N+K + R++ V+ + P LA+ A
Sbjct: 88 NKKSTISAREIQTAVRLILPGELAKHA 114
>gb|AAB04688.1| histone H2B gi|1708107|sp|P54348|H2B5_MAIZE Histone H2B
gi|7439752|pir||T02077 histone H2B - maize
Length = 154
Score = 55.1 bits (131), Expect = 4e-07
Identities = 31/97 (31%), Positives = 56/97 (56%), Gaps = 3/97 (3%)
Query: 6 GKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKI 62
GK+ E G G K+ ++VE +K +I++V K+VHPD+ I+ +++ +MN +ND+ K+
Sbjct: 44 GKSAGKEGGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKL 103
Query: 63 VEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
E AK + + R++ V+ + P LA+ A
Sbjct: 104 AAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHA 140
>emb|CAA29059.1| Histone H2B-1 [Tetrahymena thermophila] gi|84350|pir||A27097
histone H2B.1 - Tetrahymena thermophila
gi|122021|sp|P08993|H2B1_TETTH Histone H2B.1 (H2B-1)
Length = 122
Score = 54.7 bits (130), Expect = 5e-07
Identities = 29/80 (36%), Positives = 48/80 (59%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+R+ F +I++V K+VHPD+ I+ +++ +MN +ND +I E +K V ++ L
Sbjct: 27 KKRSETFAIYIFKVLKQVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLS 86
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ VK L P LAR A
Sbjct: 87 SREVQTAVKLLLPGELARHA 106
>emb|CAA29060.1| Histone H2B-2 [Tetrahymena thermophila] gi|84351|pir||B27097
histone H2B.2 - Tetrahymena thermophila
gi|122032|sp|P08994|H2B2_TETTH Histone H2B.2 (H2B-2)
Length = 122
Score = 54.7 bits (130), Expect = 5e-07
Identities = 29/80 (36%), Positives = 48/80 (59%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
K+R+ F +I++V K+VHPD+ I+ +++ +MN +ND +I E +K V ++ L
Sbjct: 27 KKRSETFAIYIFKVLKQVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLS 86
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ VK L P LAR A
Sbjct: 87 SREVQTAVKLLLPGELARHA 106
>ref|XP_525086.1| PREDICTED: similar to Histone H2B F (H2B 291A) [Pan troglodytes]
Length = 126
Score = 54.7 bits (130), Expect = 5e-07
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 2 ASKKG-KNIILEVGSSSGTKR---RTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMND 57
ASKKG K I + G KR R + ++Y+V K+VHPD I+ +++ +MN +ND
Sbjct: 10 ASKKGSKKAITKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVND 69
Query: 58 MLHKIVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
+ +I E ++ + + R++ V+ L P LA+ A
Sbjct: 70 IFERIASEASRLAHYNKRSTITSREMQTAVRLLLPGELAKHA 111
>emb|CAA12233.1| histone H2B [Lycopersicon esculentum] gi|7439756|pir||T06393
histone H2B - tomato
Length = 142
Score = 54.7 bits (130), Expect = 5e-07
Identities = 32/100 (32%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 4 KKGKNIILEVGSSSGTKR--RTVE-FKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLH 60
K GK + + G+ K+ ++VE +K +I++V K+VHPD+ I+ +S+ +MN +ND+
Sbjct: 30 KAGKKLPKDAGADKKKKKSKKSVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFE 89
Query: 61 KIVEEVAKNVAALNQK-LLVERDLWVGVKELYPKYLARCA 99
K+ +E + +A +N+K + R++ V+ + P LA+ A
Sbjct: 90 KLAQE-SSRLARINKKPTITSREIQTAVRLVLPGELAKHA 128
>gb|EAK93555.1| histone H2B [Candida albicans SC5314] gi|46434099|gb|EAK93518.1|
histone H2B [Candida albicans SC5314]
Length = 130
Score = 54.7 bits (130), Expect = 5e-07
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 14 GSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAAL 73
G+ TK R + +IY+V K+ HPD I+ +++ +MN +ND+ +I E +K +AA
Sbjct: 29 GAKKRTKARKETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERIATEASK-LAAY 87
Query: 74 NQKLLVE-RDLWVGVKELYPKYLARCA 99
N+K + R++ V+ + P LA+ A
Sbjct: 88 NKKSTISAREIQTAVRLILPGELAKHA 114
>dbj|BAD84179.1| histone H2B [Paramecium caudatum]
Length = 124
Score = 54.7 bits (130), Expect = 5e-07
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 20 KRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHKIVEEVAKNVAALNQKLLV 79
+RR F +IY+V ++VHP++ I+ +++ +MN +ND+ +I E +K V ++ L
Sbjct: 31 RRRQETFALYIYKVLRQVHPEIGISRKAMNIMNSFINDIFDRIALEASKLVRFNKRRTLS 90
Query: 80 ERDLWVGVKELYPKYLARCA 99
R++ VK L P LAR A
Sbjct: 91 SREIQTAVKLLLPGELARHA 110
>gb|AAH76088.1| Zgc:92591 [Danio rerio] gi|50540518|ref|NP_001002724.1| zgc:92591
[Danio rerio]
Length = 117
Score = 54.7 bits (130), Expect = 5e-07
Identities = 32/98 (32%), Positives = 53/98 (53%), Gaps = 1/98 (1%)
Query: 2 ASKKGKNIILEVGSSSGTKRRTVEFKKHIYRVAKKVHPDLDITVESIEMMNDIMNDMLHK 61
A KKGK + GS +KRR + +IY+V K+VHPD I+ ++ +MN +ND+ +
Sbjct: 6 AKKKGKAPGDKKGSKRKSKRRET-YAVYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFER 64
Query: 62 IVEEVAKNVAALNQKLLVERDLWVGVKELYPKYLARCA 99
I E ++ + + R++ V+ L P LA+ A
Sbjct: 65 IATEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHA 102
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,659,057
Number of Sequences: 2540612
Number of extensions: 7535115
Number of successful extensions: 25233
Number of sequences better than 10.0: 493
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 24825
Number of HSP's gapped (non-prelim): 494
length of query: 141
length of database: 863,360,394
effective HSP length: 117
effective length of query: 24
effective length of database: 566,108,790
effective search space: 13586610960
effective search space used: 13586610960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC148996.1