BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148969.6 + phase: 0
(280 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563974.1| peptide deformylase, mitochondrial / polypeptid... 243 3e-63
sp|Q9FUZ0|DEFM_LYCES Peptide deformylase, mitochondrial precurso... 243 3e-63
gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana] gi|13605... 242 1e-62
ref|NP_918338.1| peptide deformylase-like protein [Oryza sativa ... 202 1e-50
emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis] 148 1e-34
gb|AAH75522.1| MGC89413 protein [Xenopus tropicalis] gi|52345870... 148 2e-34
gb|AAH97196.1| Unknown (protein for MGC:114141) [Danio rerio] 146 7e-34
gb|AAN13481.1| CG31373-PA [Drosophila melanogaster] gi|24645728|... 144 3e-33
gb|AAY55114.1| IP07194p [Drosophila melanogaster] 144 3e-33
ref|YP_113830.1| polypeptide deformylase [Methylococcus capsulat... 143 5e-33
ref|NP_924675.1| polypeptide deformylase [Gloeobacter violaceus ... 143 5e-33
sp|Q7NJV3|DEF1_GLOVI Peptide deformylase 1 (PDF 1) (Polypeptide ... 143 5e-33
gb|EAL29158.1| GA16218-PA [Drosophila pseudoobscura] 137 3e-31
ref|XP_546857.1| PREDICTED: similar to component of oligomeric g... 136 6e-31
sp|Q9HBH1|DEFM_HUMAN Peptide deformylase, mitochondrial precurso... 133 5e-30
gb|AAH19912.1| Peptide deformylase-like protein [Homo sapiens] 133 5e-30
ref|XP_307154.2| ENSANGP00000012713 [Anopheles gambiae str. PEST... 128 2e-28
ref|XP_310421.2| ENSANGP00000017891 [Anopheles gambiae str. PEST... 128 2e-28
gb|EAL29159.1| GA16144-PA [Drosophila pseudoobscura] 123 7e-27
dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces a... 121 2e-26
>ref|NP_563974.1| peptide deformylase, mitochondrial / polypeptide deformylase 1A
(PDF1A) [Arabidopsis thaliana]
gi|11320952|gb|AAG33973.1| peptide deformylase-like
protein [Arabidopsis thaliana]
Length = 269
Score = 243 bits (621), Expect = 3e-63
Identities = 137/252 (54%), Positives = 172/252 (67%), Gaps = 6/252 (2%)
Query: 13 TEMEAARRLASRLRVVPMMLVFSNAT--VSSSSSSCNTETPPSNTKLSSFSSASSETAFL 70
T ME R++ RL V + + VS SS N SS SS S++ +L
Sbjct: 9 TAMETLFRVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLSTKAGWL 68
Query: 71 ----SKTLKSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLS 126
K K +LP IV +GDPVLHE AREVD EI S++IQKIID MI VMR APG+ L+
Sbjct: 69 LGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLA 128
Query: 127 AQKIGIPLRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGC 186
A +IG+PLRIIVLE+ KE + +E +RR FDL+V++NP LK +SNK LFFEGC
Sbjct: 129 APQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGC 188
Query: 187 LSVHGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRT 246
LSV GF+A VERYL+V V G+DR G+ I++NASGW ARILQHECDHLDG LYVDKMVPRT
Sbjct: 189 LSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRT 248
Query: 247 FRSWENINMSIA 258
FR+ +N+++ +A
Sbjct: 249 FRTVDNLDLPLA 260
>sp|Q9FUZ0|DEFM_LYCES Peptide deformylase, mitochondrial precursor (PDF) (Polypeptide
deformylase) gi|11320968|gb|AAG33981.1| peptide
deformylase-like protein [Lycopersicon esculentum]
Length = 277
Score = 243 bits (621), Expect = 3e-63
Identities = 122/203 (60%), Positives = 158/203 (77%), Gaps = 3/203 (1%)
Query: 59 SFSSASSETAF---LSKTLKSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMIL 115
++SSA++ + L + K +P IV+AGDPVLHEP++++ EI S++IQKII+ M+
Sbjct: 66 NYSSATARAGWFLGLGEKKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVK 125
Query: 116 VMRNAPGISLSAQKIGIPLRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIK 175
VMRNAPG+ L+A +IGIPL+IIVLE+ E + ++ K DRRPF LLVI+NPKLK K
Sbjct: 126 VMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKK 185
Query: 176 SNKTFLFFEGCLSVHGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDG 235
NKT LFFEGCLSV GF+AVVER+L+VEV G DR G+ IK++ASGW ARILQHE DHLDG
Sbjct: 186 GNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDG 245
Query: 236 TLYVDKMVPRTFRSWENINMSIA 258
TLYVDKM PRTFR+ EN+++ +A
Sbjct: 246 TLYVDKMAPRTFRTVENLDLPLA 268
>gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana] gi|13605760|gb|AAK32873.1|
At1g15390/F9L1_34 [Arabidopsis thaliana]
gi|17433051|sp|Q9FV53|DEFM_ARATH Peptide deformylase,
mitochondrial precursor (PDF) (Polypeptide deformylase)
gi|5103837|gb|AAD39667.1| Simalar to gi|4377403
Polypeptide Deformylase from Chlamydia pneumoniae genome
gb|AE001687. [Arabidopsis thaliana]
Length = 259
Score = 242 bits (617), Expect = 1e-62
Identities = 136/250 (54%), Positives = 171/250 (68%), Gaps = 6/250 (2%)
Query: 15 MEAARRLASRLRVVPMMLVFSNAT--VSSSSSSCNTETPPSNTKLSSFSSASSETAFL-- 70
ME R++ RL V + + VS SS N SS SS S++ +L
Sbjct: 1 METLFRVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLSTKAGWLLG 60
Query: 71 --SKTLKSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQ 128
K K +LP IV +GDPVLHE AREVD EI S++IQKIID MI VMR APG+ L+A
Sbjct: 61 LGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAP 120
Query: 129 KIGIPLRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLS 188
+IG+PLRIIVLE+ KE + +E +RR FDL+V++NP LK +SNK LFFEGCLS
Sbjct: 121 QIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLS 180
Query: 189 VHGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFR 248
V GF+A VERYL+V V G+DR G+ I++NASGW ARILQHECDHLDG LYVDKMVPRTFR
Sbjct: 181 VDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFR 240
Query: 249 SWENINMSIA 258
+ +N+++ +A
Sbjct: 241 TVDNLDLPLA 250
>ref|NP_918338.1| peptide deformylase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 246
Score = 202 bits (513), Expect = 1e-50
Identities = 98/163 (60%), Positives = 126/163 (77%)
Query: 73 TLKSELPHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGI 132
T + P V+AGDPVLHEPA++V +I S+K+Q +ID M+ VMR APG+ L+A +IG+
Sbjct: 66 TAMTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGV 125
Query: 133 PLRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGF 192
PL+IIVLE+ +E + ++ + DRRPFDLLVI+NPKLK S +T LFFEGCLSV G+
Sbjct: 126 PLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGY 185
Query: 193 QAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDG 235
+A+VER+LDVEV G DR G PIK+ ASGW ARILQHECDHL+G
Sbjct: 186 RALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEG 228
>emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis]
Length = 198
Score = 148 bits (374), Expect = 1e-34
Identities = 75/177 (42%), Positives = 105/177 (58%), Gaps = 2/177 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
H+ Q GDPVL A VD + ++QK++ ++ VMR + LSA +IG+PLRI+ L
Sbjct: 21 HVCQVGDPVLRSRAAPVDPGAVGGAEVQKVVHTLVKVMRELDCVGLSAPQIGVPLRILAL 80
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E P++ L + + L + +NP+L++ +T LF E C S+ GF A V RY
Sbjct: 81 EYPEKMLEESSPASREARGLSAQPLRIFVNPQLRVLDGRTALFQEACESISGFSATVPRY 140
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS--WENIN 254
L VEV G + GE ++ A GW ARILQHE DHLDG LY+D+M RTF + W+ N
Sbjct: 141 LSVEVSGLNENGEEVRWQARGWPARILQHEMDHLDGVLYIDRMDSRTFTNIHWQAFN 197
>gb|AAH75522.1| MGC89413 protein [Xenopus tropicalis]
gi|52345870|ref|NP_001004979.1| MGC89413 protein
[Xenopus tropicalis]
Length = 239
Score = 148 bits (373), Expect = 2e-34
Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 2/176 (1%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
+ Q GDPVL A V ++I+ Q +++ M+ V+R + LSA +IG+PLRI+ +
Sbjct: 63 VTQTGDPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAVA 122
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
P++ EV + PF L + +NP+++I ++T F EGC SV GF AVV RY
Sbjct: 123 FPQQMYQAVPPEVRNAREMSPFPLQIFINPEMRIVDSRTLSFPEGCSSVQGFSAVVPRYY 182
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTF--RSWENIN 254
VE++G + GE + A GW ARI+QHE DHLDG LY+DKM PRTF SW +N
Sbjct: 183 AVELQGMNPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKMDPRTFVNISWMEVN 238
>gb|AAH97196.1| Unknown (protein for MGC:114141) [Danio rerio]
Length = 247
Score = 146 bits (368), Expect = 7e-34
Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 10/221 (4%)
Query: 39 VSSSSSSCNTETPPSNTKLSSFSSASSETAFLSKTLKSELP---HIVQAGDPVLHEPARE 95
+S+++ + + T +N K+ S+ K S +P H+ Q GDPVL A E
Sbjct: 31 LSANTCTASPRTHSTNVKVRSYLQYMKR-----KVQGSPVPPYNHVCQVGDPVLRSHAAE 85
Query: 96 VDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLEEPKENLYNYTEEVNK 155
V+ I ++QK+I ++ VMR + LSA +IG+PLRI+ LE PK+ L + +
Sbjct: 86 VEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIGVPLRILALEYPKKMLEESSTASVE 145
Query: 156 IIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYLDVEVEGFDRYGEPIK 215
L++ +NP+L++ +T +F E C S+ G+ A V RY+ VEV G + E +
Sbjct: 146 ARGLVAVPLMIFINPQLRVLDGRTVIFQEACESISGYSASVPRYVSVEVSGLNEKAEEVS 205
Query: 216 INASGWHARILQHECDHLDGTLYVDKMVPRTFRS--WENIN 254
ASGW ARILQHE DHL+G LY+D M +TF + WE N
Sbjct: 206 WKASGWPARILQHEMDHLNGVLYIDHMDSKTFINVKWEEHN 246
>gb|AAN13481.1| CG31373-PA [Drosophila melanogaster] gi|24645728|ref|NP_731495.1|
CG31373-PA [Drosophila melanogaster]
Length = 196
Score = 144 bits (363), Expect = 3e-33
Identities = 76/183 (41%), Positives = 112/183 (60%), Gaps = 2/183 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
H Q GDPVL + A EV +I+S +I +IIDGM+ V+R+ + ++A ++GIPLRIIV+
Sbjct: 8 HFTQIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVM 67
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E + + E+ + L V +NP+L+I S++ EGC+SV G+ A VERY
Sbjct: 68 EFREGKQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERY 127
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS--WENINMSI 257
V + G + G P ++ GW+ARI QHE DHL+GT+Y+D+M TF WE IN +
Sbjct: 128 DKVRIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMDLSTFNCILWEQINAAE 187
Query: 258 ARA 260
R+
Sbjct: 188 GRS 190
>gb|AAY55114.1| IP07194p [Drosophila melanogaster]
Length = 206
Score = 144 bits (363), Expect = 3e-33
Identities = 76/183 (41%), Positives = 112/183 (60%), Gaps = 2/183 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
H Q GDPVL + A EV +I+S +I +IIDGM+ V+R+ + ++A ++GIPLRIIV+
Sbjct: 18 HFTQIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVM 77
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E + + E+ + L V +NP+L+I S++ EGC+SV G+ A VERY
Sbjct: 78 EFREGKQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERY 137
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS--WENINMSI 257
V + G + G P ++ GW+ARI QHE DHL+GT+Y+D+M TF WE IN +
Sbjct: 138 DKVRIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMDLSTFNCILWEQINAAE 197
Query: 258 ARA 260
R+
Sbjct: 198 GRS 200
>ref|YP_113830.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
gi|53758098|gb|AAU92389.1| polypeptide deformylase
[Methylococcus capsulatus str. Bath]
Length = 191
Score = 143 bits (361), Expect = 5e-33
Identities = 79/172 (45%), Positives = 106/172 (60%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
IVQAG+PVL + AR + EI S +Q +I M MR+APG+ L+A +IG L++ V+E
Sbjct: 10 IVQAGEPVLRQRARPLSPEEIRSAAVQALIGHMRETMRDAPGVGLAAPQIGQGLQLAVIE 69
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+ + + E R P VI+NP++ +S +T +F EGCLS+ GF A VER
Sbjct: 70 DRADYHRGLSAEELAARGREPVPFHVIVNPEIVARSEETDVFHEGCLSLAGFSARVERAR 129
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWEN 252
V V D GEP I ASGW+ARILQHE DHL G LY+D+M PR+F + N
Sbjct: 130 WVRVSCLDHRGEPQTIEASGWYARILQHEIDHLHGRLYIDRMDPRSFTTQPN 181
>ref|NP_924675.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
gi|35212295|dbj|BAC89670.1| polypeptide deformylase
[Gloeobacter violaceus PCC 7421]
Length = 275
Score = 143 bits (361), Expect = 5e-33
Identities = 71/172 (41%), Positives = 109/172 (63%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
IV+ GDPVL A+ ++ EI S+ IQ++I M MR APG+ L+A ++G+ ++++V+E
Sbjct: 96 IVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIE 155
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+ E + + + +R P V++NP L ++ ++ +FFEGCLS+ G+Q +V R
Sbjct: 156 DRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARAR 215
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWEN 252
V VE D P+ I A GW+ARILQHE DHL+G L VD+M +TF + EN
Sbjct: 216 VVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLEN 267
>sp|Q7NJV3|DEF1_GLOVI Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1)
Length = 227
Score = 143 bits (361), Expect = 5e-33
Identities = 71/172 (41%), Positives = 109/172 (63%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
IV+ GDPVL A+ ++ EI S+ IQ++I M MR APG+ L+A ++G+ ++++V+E
Sbjct: 48 IVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIE 107
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+ E + + + +R P V++NP L ++ ++ +FFEGCLS+ G+Q +V R
Sbjct: 108 DRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARAR 167
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWEN 252
V VE D P+ I A GW+ARILQHE DHL+G L VD+M +TF + EN
Sbjct: 168 VVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLEN 219
>gb|EAL29158.1| GA16218-PA [Drosophila pseudoobscura]
Length = 196
Score = 137 bits (345), Expect = 3e-31
Identities = 72/183 (39%), Positives = 108/183 (58%), Gaps = 2/183 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
H Q GDPVL + A EV I + +I +I+D M+ V+R+ + ++A ++G+PLRIIV+
Sbjct: 8 HFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGVPLRIIVM 67
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E + + E+ L V +NP+L+I S+ EGC+SV G+ A VERY
Sbjct: 68 EFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGYSAQVERY 127
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFR--SWENINMSI 257
V ++G + G P ++ GW+ARI QHE DHL+G +YVD+M TF SW+ IN +
Sbjct: 128 DRVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMDVSTFNCLSWQQINAAE 187
Query: 258 ARA 260
R+
Sbjct: 188 GRS 190
>ref|XP_546857.1| PREDICTED: similar to component of oligomeric golgi complex 8
[Canis familiaris]
Length = 836
Score = 136 bits (343), Expect = 6e-31
Identities = 66/178 (37%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
Query: 79 PHIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIV 138
PH+ Q GDP L A V+ +++ ++Q+++ ++ VMR + LSA ++G+PL+++
Sbjct: 658 PHVCQVGDPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLA 717
Query: 139 LEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVER 198
E P+ + + PF L V++NP L++ ++ F EGC SV GF A V R
Sbjct: 718 FEFPEALFRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPR 777
Query: 199 YLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS--WENIN 254
+ V++ G D GE + ASGW ARI+QHE DHL G L++DKM +TF + W +N
Sbjct: 778 FQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSKTFTNIHWMEVN 835
>sp|Q9HBH1|DEFM_HUMAN Peptide deformylase, mitochondrial precursor (PDF) (Polypeptide
deformylase) gi|13195254|gb|AAK15624.1| polypeptide
deformylase-like protein [Homo sapiens]
gi|11320944|gb|AAG33968.1| peptide deformylase-like
protein [Homo sapiens] gi|11641243|ref|NP_071736.1|
peptide deformylase-like protein [Homo sapiens]
gi|38230771|gb|AAR14341.1| peptide deformylase
[synthetic construct]
Length = 243
Score = 133 bits (335), Expect = 5e-30
Identities = 67/177 (37%), Positives = 101/177 (56%), Gaps = 2/177 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
H+ Q GDPVL A V+ +++ ++Q++ ++ VMR + LSA ++G+P +++ L
Sbjct: 66 HVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLAL 125
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E P+ + PF L V +NP L++ ++ F EGC SV GF A V R+
Sbjct: 126 ELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS--WENIN 254
V++ G D GE + ASGW ARI+QHE DHL G L++DKM RTF + W +N
Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMKVN 242
>gb|AAH19912.1| Peptide deformylase-like protein [Homo sapiens]
Length = 243
Score = 133 bits (335), Expect = 5e-30
Identities = 67/177 (37%), Positives = 101/177 (56%), Gaps = 2/177 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
H+ Q GDPVL A V+ +++ ++Q++ ++ VMR + LSA ++G+P +++ L
Sbjct: 66 HVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLAL 125
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E P+ + PF L V +NP L++ ++ F EGC SV GF A V R+
Sbjct: 126 ELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRS--WENIN 254
V++ G D GE + ASGW ARI+QHE DHL G L++DKM RTF + W +N
Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMKVN 242
>ref|XP_307154.2| ENSANGP00000012713 [Anopheles gambiae str. PEST]
gi|55246817|gb|EAA02964.2| ENSANGP00000012713 [Anopheles
gambiae str. PEST]
Length = 221
Score = 128 bits (321), Expect = 2e-28
Identities = 68/182 (37%), Positives = 104/182 (56%), Gaps = 2/182 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
HIVQ GDPVL PA + E+ S ++Q + + VMR + L+A ++G+ LR V+
Sbjct: 33 HIVQLGDPVLRVPANAIPEKELQSAEVQYLARHLTKVMRAYRCVGLAAPQLGLSLRAFVM 92
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E E YT+ K+ + P L ++LNP+LK+ + + + E C SV G++A V RY
Sbjct: 93 EFKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHTEACESVRGYRADVPRY 152
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPR--TFRSWENINMSI 257
++ ++GFD G ++ SGW+ARI QHE DHL+G +Y D M + T W+ +N
Sbjct: 153 REILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNRKSLTCTCWQAVNAKS 212
Query: 258 AR 259
R
Sbjct: 213 GR 214
>ref|XP_310421.2| ENSANGP00000017891 [Anopheles gambiae str. PEST]
gi|55243994|gb|EAA06035.2| ENSANGP00000017891 [Anopheles
gambiae str. PEST]
Length = 240
Score = 128 bits (321), Expect = 2e-28
Identities = 68/182 (37%), Positives = 104/182 (56%), Gaps = 2/182 (1%)
Query: 80 HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVL 139
HIVQ GDPVL PA + E+ S ++Q + + VMR + L+A ++G+ LR V+
Sbjct: 52 HIVQLGDPVLRVPANAIPEKELQSAEVQYLARHLTKVMRAYRCVGLAAPQLGLSLRAFVM 111
Query: 140 EEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERY 199
E E YT+ K+ + P L ++LNP+LK+ + + + E C SV G++A V RY
Sbjct: 112 EFKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHTEACESVRGYRADVPRY 171
Query: 200 LDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPR--TFRSWENINMSI 257
++ ++GFD G ++ SGW+ARI QHE DHL+G +Y D M + T W+ +N
Sbjct: 172 REILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNRKSLTCTCWQAVNAKS 231
Query: 258 AR 259
R
Sbjct: 232 GR 233
>gb|EAL29159.1| GA16144-PA [Drosophila pseudoobscura]
Length = 238
Score = 123 bits (308), Expect = 7e-27
Identities = 72/192 (37%), Positives = 102/192 (52%), Gaps = 5/192 (2%)
Query: 73 TLKSELP---HIVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQK 129
T ++ LP H Q GDPVL + A V I +I+ I++ M+ V+R + ++A +
Sbjct: 40 TERTNLPPYNHFTQIGDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQ 99
Query: 130 IGIPLRIIVLEEPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSV 189
IG+ LRII +E K E V + L V++NP L + + EGC+SV
Sbjct: 100 IGVSLRIIAMEFKKSLQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSV 159
Query: 190 HGFQAVVERYLDVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTF-- 247
GF A VER+ V++ G D+ + + SGW+ARI QHE DHLDG LY D+M TF
Sbjct: 160 RGFSAEVERFEGVKLSGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDRSTFSC 219
Query: 248 RSWENINMSIAR 259
WE +N R
Sbjct: 220 TCWEAVNTKSGR 231
>dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
gi|39931072|sp|Q825U9|DEF3_STRAW Peptide deformylase 3
(PDF 3) (Polypeptide deformylase 3)
gi|29833891|ref|NP_828525.1| putative polypeptide
deformylase [Streptomyces avermitilis MA-4680]
Length = 224
Score = 121 bits (304), Expect = 2e-26
Identities = 68/171 (39%), Positives = 96/171 (55%), Gaps = 5/171 (2%)
Query: 81 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 140
IV AGDPVL A D ++ + + ++ + L M APG+ L+A ++G+ LRI V+E
Sbjct: 35 IVAAGDPVLRRGAEPYD-GQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 93
Query: 141 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 200
+P EEV + R P V++NP + + FFEGCLSV G+QAVV R
Sbjct: 94 DPAP----VPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPA 149
Query: 201 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVPRTFRSWE 251
V + D +G + +GW ARI+QHE DHLDG LY+D+ R+ S E
Sbjct: 150 RVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAELRSLSSNE 200
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,224,649
Number of Sequences: 2540612
Number of extensions: 17259775
Number of successful extensions: 71612
Number of sequences better than 10.0: 514
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 70080
Number of HSP's gapped (non-prelim): 755
length of query: 280
length of database: 863,360,394
effective HSP length: 126
effective length of query: 154
effective length of database: 543,243,282
effective search space: 83659465428
effective search space used: 83659465428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)
Medicago: description of AC148969.6