BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148918.3 + phase: 0
(1351 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis tha... 1353 0.0
gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 1348 0.0
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi... 1347 0.0
gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis tha... 1337 0.0
gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana] 1257 0.0
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 1205 0.0
gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum] 1157 0.0
emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278... 1149 0.0
gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cult... 1130 0.0
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 1102 0.0
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 1102 0.0
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 1022 0.0
gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana] 1017 0.0
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi... 986 0.0
gb|AAP51989.1| putative pol polyprotein [Oryza sativa (japonica ... 977 0.0
gb|AAP51797.1| putative copia-type polyprotein [Oryza sativa (ja... 976 0.0
ref|NP_912850.1| unnamed protein product [Oryza sativa (japonica... 943 0.0
ref|XP_474787.1| OSJNBb0026E15.10 [Oryza sativa (japonica cultiv... 936 0.0
emb|CAD41367.2| OSJNBa0088A01.6 [Oryza sativa (japonica cultivar... 932 0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 798 0.0
>gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 1353 bits (3502), Expect = 0.0
Identities = 690/1374 (50%), Positives = 931/1374 (67%), Gaps = 63/1374 (4%)
Query: 7 NIVWSGPKLNSELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADELA------------R 54
N+ + P L +++ W M L AH++W VE G + +E + R
Sbjct: 5 NVPFQVPVLTKS-NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSR 63
Query: 55 RRDQLALSQILQGIDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERY 114
+RD+ AL I QG+D F K+ A ++KEAW+ L+ S+KG ++ +K +LQ+LR E+E
Sbjct: 64 KRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEAL 123
Query: 115 EMSSSETVDQYFTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTD 174
+M E V YF+RV+ + N ++ GE + D +++EK+LR++ +K++H+VT I E+ D +
Sbjct: 124 QMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLE 183
Query: 175 TLSVAELQGSIESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRG 234
+++ +L GS++++ E+ +K KE+ ++ +N+ E + ++ G G
Sbjct: 184 AMTIEQLLGSLQAY-----EEKKKKKEDIIEQVLNMQITKEENGQ-------SYQRRGGG 231
Query: 235 NFRGRGRGSFRGRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNN-RGRGRGYYNQ--ER 291
RGRGRG + G GRG WR + N N G N+ RGRG+G+ ++
Sbjct: 232 QVRGRGRGGY-GNGRG----WRPHEDNT----------NQRGENSSRGRGKGHPKSRYDK 276
Query: 292 TNNGCFNCGKYGHKAADCRYKHQANMAENSYQHFGESSQNQHSLFLASNTLSEEE--NIW 349
++ C+NCGK+GH A++C+ E + + E Q + L +AS E+E + W
Sbjct: 277 SSVKCYNCGKFGHYASECKAPSNKKFEEKA-NYVEEKIQEEDMLLMASYKKDEQEENHKW 335
Query: 350 YLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVF 409
YLD+G SNHMCG+K +F+ LDE+V+ V G+ S + ++GKG I IRLK+G FI +V+
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 410 YAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFS 469
Y P + N+LS+GQL EK Y++++ ++ D ITKV MS NR+F L I++D
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ 455
Query: 470 CLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESF 529
CL + WLWH+RFGH +F GL LSRKE V GLP + P+ VCE C +GK+ + SF
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 530 PTGKSWRAKKLLEIVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSF 588
P S RA+K LE++H+D+C ++ + G YF+ FIDDFSRK WVYFLK+KSE + F
Sbjct: 516 PKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 589 KTFKAFVEKQSGCPIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKN 646
K FKA VEK+SG IK +R+DRG E+ + E +GI+ QLT +PQQNGVAERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKN 635
Query: 647 RTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLR 706
RTI++M R MLK+K++PKE WAEAVA AVY+LNR PTKSV KTP+EA SGR+ + HLR
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLR 695
Query: 707 VFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGM 766
VFG IA+AHVPD+ R KLDDK E+ IFIGY +NSK YKLYNP+TKK IISR++ FDE G
Sbjct: 696 VFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGE 755
Query: 767 WNWSSKSQKEPIVTPNDYEEEDEHVDTTP--DEPDEPETSN-----REKRNRRLPA--RL 817
W+W+S ++++ P+ E+E E P +EP P TS E + R P +
Sbjct: 756 WDWNS-NEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSI 814
Query: 818 QDCVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTE 877
Q+ T+N E + F LFA+CEP+ F+EA + W AMDEEI +I+KN TWELT
Sbjct: 815 QELYEVTENQ---ENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTS 871
Query: 878 LPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRML 937
LP K IGVKWVYK K GE++RYKARLVAKGY Q+ GIDY EVFAPVARL+T+R++
Sbjct: 872 LPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLI 931
Query: 938 ISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAP 997
ISL+AQN WKIHQMDVKSAFLNG LEEEVY+EQP GY+V+G+EDKV RLKKALYGLKQAP
Sbjct: 932 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 991
Query: 998 RAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFRG 1057
RAW +ID YF + F +CP+EH LYIK I D+LI CLYVDDLIFTGNN M EF+
Sbjct: 992 RAWNTRIDKYFKEKDFIKCPYEHALYIK-IQKEDILIACLYVDDLIFTGNNPSMFEEFKK 1050
Query: 1058 AMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKL 1117
M FEMTD+GLMSY+LGIEV Q+ +GIFI+Q+ YA ++LKKFKM+ S P+ TP+E +
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGI 1110
Query: 1118 KLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILR 1177
KL+++ +G+ VD T +KSL+GSLRYLT TRPDI+Y VG++SRYME P +H + AKRILR
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170
Query: 1178 YIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHVV 1237
YIKGT+ G+ Y SD KLVGY+DSDW GD + RKSTSG+ F++G A +W SKKQ +V
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIV 1230
Query: 1238 ALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSK 1297
LST EAEY+ ATSC +WLR +L+ + Q PTKI+ DNKSAIAL+KNPVFH RSK
Sbjct: 1231 VLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSK 1290
Query: 1298 HIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMMKA 1351
HID R+H IRE +++K+V +EY T +Q+ADIFTKPLK E F K++ +LG+ K+
Sbjct: 1291 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGVAKS 1344
>gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25301681|pir||F86246
hypothetical protein [imported] - Arabidopsis thaliana
Length = 1352
Score = 1348 bits (3489), Expect = 0.0
Identities = 686/1374 (49%), Positives = 929/1374 (66%), Gaps = 63/1374 (4%)
Query: 7 NIVWSGPKLNSELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADELA------------R 54
N+ + P L +++ W M L AH++W VE G + +E + R
Sbjct: 5 NVPFQVPVLTKS-NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSR 63
Query: 55 RRDQLALSQILQGIDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERY 114
+RD+ AL I QG+D F K+ A ++KEAW+ L+ S+KG ++ +K +LQ+LR E+E
Sbjct: 64 KRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEAL 123
Query: 115 EMSSSETVDQYFTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTD 174
+M E V YF+RV+ + N ++ GE + D +++EK+LR++ +K++H+VT I E+ D +
Sbjct: 124 QMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLE 183
Query: 175 TLSVAELQGSIESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRG 234
+++ +L GS++++ E+ +K KE+ ++ +N+ E + ++ G G
Sbjct: 184 AMTIEQLLGSLQAY-----EEKKKKKEDIVEQVLNMQITKEENGQ-------SYQRRGGG 231
Query: 235 NFRGRGRGSFRGRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNN-RGRGRGYYNQ--ER 291
RGRGRG + G GRG WR + N N G N+ RGRG+G+ ++
Sbjct: 232 QVRGRGRGGY-GNGRG----WRPHEDNT----------NQRGENSSRGRGKGHPKSRYDK 276
Query: 292 TNNGCFNCGKYGHKAADCRYKHQANMAENSYQHFGESSQNQHSLFLASNTLSE--EENIW 349
++ C+NCGK+GH A++C+ E + + E Q + L +AS E E + W
Sbjct: 277 SSVKCYNCGKFGHYASECKAPSNKKFEEKA-NYVEEKIQEEDMLLMASYKKDEQKENHKW 335
Query: 350 YLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVF 409
YLD+G SNHMCG+K +F+ LDE+V+ V G+ S + ++GKG I IRLK+G FI +V+
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 410 YAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFS 469
Y P + N+LS+GQL EK Y++++ ++ D ITKV MS NR+F L I++D
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ 455
Query: 470 CLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESF 529
CL + WLWH+RFGH +F GL LSRKE V GLP + P+ VCE C +GK+ + SF
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 530 PTGKSWRAKKLLEIVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSF 588
P S RA+K LE++H+D+C ++ + G YF+ FIDDFSRK WVYFLK+KSE + F
Sbjct: 516 PKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 589 KTFKAFVEKQSGCPIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKN 646
K FKA VEK+SG IK +R+DRG E+ + E +GI+ QLT +PQQNGV ERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKN 635
Query: 647 RTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLR 706
RTI++M R MLK+K++PKE WAEAVA AVY+LNR PTKSV KTP+EA SGR+P + HLR
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Query: 707 VFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGM 766
VFG IA+AHVPD+ R KLDDK E+ IFIGY +NSK YKLYNP+TKK IISR++ FDE G
Sbjct: 696 VFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGE 755
Query: 767 WNWSSKSQKEPIVTPNDYEEEDEHVDTTP--DEPDEPETSN-----REKRNRRLPA--RL 817
W+W+S ++++ P+ E+E E P +EP P TS E + R P +
Sbjct: 756 WDWNS-NEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSI 814
Query: 818 QDCVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTE 877
Q+ T+N E + F LFA+CEP+ F++A + W AMDEEI +I+KN TWELT
Sbjct: 815 QELYEVTENQ---ENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTS 871
Query: 878 LPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRML 937
LP K IGVKWVYK K GE++RYKARLVAKGY Q+ GIDY EVFAPVARL+T+R++
Sbjct: 872 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLI 931
Query: 938 ISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAP 997
ISL+AQN WKIHQMDVKSAFLNG LEEEVY+EQP GY+V+G+EDKV RLKK LYGLKQAP
Sbjct: 932 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991
Query: 998 RAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFRG 1057
RAW +ID YF + F +CP+EH LYIK I D+LI CLYVDDLIFTGNN + EF+
Sbjct: 992 RAWNTRIDKYFKEKDFIKCPYEHALYIK-IQKEDILIACLYVDDLIFTGNNPSIFEEFKK 1050
Query: 1058 AMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKL 1117
M FEMTD+GLMSY+LGIEV Q+ +GIFI+Q+ YA ++LKKFKM+ S P+ TP+E +
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGI 1110
Query: 1118 KLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILR 1177
KL+++ +G+ VD T +KSL+GSLRYLT TRPDI+Y VG++SRYME P +H + AKRILR
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170
Query: 1178 YIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHVV 1237
YIKGT+ G+ Y SD KLVGY+DSDW GD + RKSTSG+ F++G A +W SKKQ +V
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIV 1230
Query: 1238 ALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSK 1297
LST EAEY+ ATSC +WLR +L+ + Q PTKI+ DNKSAIAL+KNPVFH RSK
Sbjct: 1231 TLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSK 1290
Query: 1298 HIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMMKA 1351
HID R+H IRE +++K+V +EY T +Q+AD FTKPLK E+F K++ +LG+ K+
Sbjct: 1291 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKMRSLLGVAKS 1344
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi|11278364|pir||T47925
copia-type polyprotein - Arabidopsis thaliana
Length = 1352
Score = 1347 bits (3485), Expect = 0.0
Identities = 686/1374 (49%), Positives = 927/1374 (66%), Gaps = 63/1374 (4%)
Query: 7 NIVWSGPKLNSELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADELA------------R 54
N+ + P L +++ W M L AH++W VE G + +E + R
Sbjct: 5 NVPFQVPVLTKS-NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSR 63
Query: 55 RRDQLALSQILQGIDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERY 114
+RD+ AL I QG+D F K+ A ++KEAW+ L+ S+KG ++ +K +LQ+LR E+E
Sbjct: 64 KRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEAL 123
Query: 115 EMSSSETVDQYFTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTD 174
+M E V YF+RV+ + N ++ GE + D +++EK+LR++ +K++H+VT I E+ D +
Sbjct: 124 QMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLE 183
Query: 175 TLSVAELQGSIESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRG 234
+++ +L GS++++ + +K E + E+ L Q+ +S Q G G
Sbjct: 184 AMTIEQLLGSLQAYEEK-KKKKEDIAEQVLNMQITKEENGQSYQ-----------RRGGG 231
Query: 235 NFRGRGRGSFRGRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNN-RGRGRGYYNQ--ER 291
RGRGRG + G GRG WR + N N G N+ RGRG+G+ ++
Sbjct: 232 QVRGRGRGGY-GNGRG----WRPHEDNT----------NQRGENSSRGRGKGHPKSRYDK 276
Query: 292 TNNGCFNCGKYGHKAADCRYKHQANMAENSYQHFGESSQNQHSLFLASNTLSE--EENIW 349
++ C+NCGK+GH A++C+ E ++ + E Q + L +AS E E + W
Sbjct: 277 SSVKCYNCGKFGHYASECKAPSNKKFEEKAH-YVEEKIQEEDMLLMASYKKDEQKENHKW 335
Query: 350 YLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVF 409
YLD+G SNHMCG+K +F+ LDE+V+ V G+ S + ++GKG I IRLK+G FI +V+
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 410 YAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFS 469
Y P + N+LS+GQL EK Y++++ ++ D ITKV MS NR+F L I++D
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ 455
Query: 470 CLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESF 529
CL + WLWH+RFGH +F GL LSRKE V GLP + P+ VCE C +GK+ + SF
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 530 PTGKSWRAKKLLEIVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSF 588
P S RA+K LE++H+D+C ++ + G YF+ FIDDFSRK WVYFLK+KSE + F
Sbjct: 516 PKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 589 KTFKAFVEKQSGCPIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKN 646
K FKA VEK+SG IK +R+DRG E+ + E +GI+ QLT +PQQNGV ERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKN 635
Query: 647 RTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLR 706
RTI++M R MLK+K++PKE WAEAVA AVY+LNR PTKSV KTP+EA SGR+P + HLR
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Query: 707 VFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGM 766
VFG IA+AHVPD+ R KLDDK E+ IFIGY +NSK YKLYNP+TKK IISR++ FDE G
Sbjct: 696 VFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGE 755
Query: 767 WNWSSKSQKEPIVTPNDYEEEDEHVDTTP--DEPDEPETSN-----REKRNRRLPA--RL 817
W+W+S ++++ P+ E+E E P +EP P TS E + R P +
Sbjct: 756 WDWNS-NEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSI 814
Query: 818 QDCVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTE 877
Q+ T+N E + F LFA+CEP+ F++A + W AMDEEI +I+KN TWELT
Sbjct: 815 QELYEVTENQ---ENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTS 871
Query: 878 LPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRML 937
LP K IGVKWVYK K GE++RYKARLVAKGY Q+ GIDY EVFAPVARL+T+R++
Sbjct: 872 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLI 931
Query: 938 ISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAP 997
ISL+AQN WKIHQMDVKSAFLNG LEEEVY+EQP GY+V+G+EDKV RLKK LYGLKQAP
Sbjct: 932 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991
Query: 998 RAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFRG 1057
RAW +ID YF + F +CP+EH LYIK I D+LI CLYVDDLIFTGNN + EF+
Sbjct: 992 RAWNTRIDKYFKEKDFIKCPYEHALYIK-IQKEDILIACLYVDDLIFTGNNPSIFEEFKK 1050
Query: 1058 AMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKL 1117
M FEMTD+GLMSY+LGIEV Q+ +GIFI+Q+ YA ++LKKFK++ S P+ TP+E +
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGI 1110
Query: 1118 KLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILR 1177
KL+++ +G+ VD T +KSL+GSLRYLT TRPDI+Y VG++SRYME P +H + AKRILR
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170
Query: 1178 YIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHVV 1237
YIKGT+ G+ Y SD KLVGY+DSDW GD + RKSTSG+ F++G A +W SKKQ +V
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIV 1230
Query: 1238 ALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSK 1297
LST EAEY+ ATSC +WLR +L+ + Q PTKI+ DNKSAIAL+KNPVFH RSK
Sbjct: 1231 TLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSK 1290
Query: 1298 HIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMMKA 1351
HID R+H IRE +++K+V +EY T +Q+AD FTKPLK E+F K++ +LG+ K+
Sbjct: 1291 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKMRSLLGVAKS 1344
>gb|AAG50765.1| copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321254|gb|AAG50698.1| copia-type polyprotein,
putative [Arabidopsis thaliana] gi|25301687|pir||F96614
probable copia-type polyprotein T18I24.5 [imported] -
Arabidopsis thaliana
Length = 1320
Score = 1337 bits (3459), Expect = 0.0
Identities = 681/1367 (49%), Positives = 919/1367 (66%), Gaps = 81/1367 (5%)
Query: 7 NIVWSGPKLNSELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADELA------------R 54
N+ + P L +++ W M L AH++W VE G + +E + R
Sbjct: 5 NVPFQVPVLTKS-NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSR 63
Query: 55 RRDQLALSQILQGIDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERY 114
+RD+ AL I QG+D F K+ A ++KEAW+ L+ S+KG ++ +K +LQ+LR E+E
Sbjct: 64 KRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEAL 123
Query: 115 EMSSSETVDQYFTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTD 174
+M E V YF+RV+ + N ++ GE + D +++EK+LR++ +K++H+VT I E+ D +
Sbjct: 124 QMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLE 183
Query: 175 TLSVAELQGSIESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRG 234
+++ +L GS++++ E+ +K KE+ ++ +N+ E + ++ G G
Sbjct: 184 AMTIEQLLGSLQAY-----EEKKKKKEDIVEQVLNMQITKEENGQ-------SYQRRGGG 231
Query: 235 NFRGRGRGSFRGRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNN-RGRGRGYYNQ--ER 291
RGRGRG + G GRG WR + N N G N+ RGRG+G+ ++
Sbjct: 232 QVRGRGRGGY-GNGRG----WRPHEDNT----------NQRGENSSRGRGKGHPKSRYDK 276
Query: 292 TNNGCFNCGKYGHKAADCRYKHQANMAENSYQHFGESSQNQHSLFLASNTLSEEE--NIW 349
++ C+NCGK+GH A++C+ E + + E Q + L +AS E+E + W
Sbjct: 277 SSVKCYNCGKFGHYASECKAPSNKKFEEKA-NYVEEKIQEEDMLLMASYKKDEQEENHKW 335
Query: 350 YLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVF 409
YLD+G SNHMCG+K +F+ LDE+V+ V G+ S + ++GKG I IRLK+G FI +V+
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 410 YAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFS 469
Y P + N+LS+GQL EK Y++++ ++ D ITKV MS NR+F L I++D
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ 455
Query: 470 CLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESF 529
CL + WLWH+RFGH +F GL LSRKE V GLP + P+ VCE C +GK+ + SF
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 530 PTGKSWRAKKLLEIVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSF 588
P S RA+K LE++H+D+C ++ + G YF+ FIDDFSRK WVYFLK+KSE + F
Sbjct: 516 PKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 589 KTFKAFVEKQSGCPIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKN 646
K FKA VEK+SG IK +R+DRG E+ + E +GI+ QLT +PQQNGVAERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKN 635
Query: 647 RTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLR 706
RTI++M R MLK+K++PKE WAEAVA AVY+LNR PTKSV KTP+EA SGR+P + HLR
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Query: 707 VFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGM 766
VFG IA+AHVPD+ R KLDDK E+ IFIGY +NSK YKLYNP+TKK IISR++ FDE G
Sbjct: 696 VFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGE 755
Query: 767 WNWSSKSQKEPIVTPNDYEEEDEHVDTTP--DEPDEPETSNREKRNRRLPARLQDCVLGT 824
W+W+S ++++ P+ E++ E P +EP P TS
Sbjct: 756 WDWNS-NEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTS-------------------- 794
Query: 825 DNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTELPPDKKP 884
P+ +I CEP+ F+EA + W AMDEEI +I+KN TWELT LP K
Sbjct: 795 ---PTSSQIEE-----KCEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKA 846
Query: 885 IGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQN 944
IGVKWVYK K GE++RYKARLVAKGY Q+ GIDY EVFAPVARL+T+R++ISL+AQN
Sbjct: 847 IGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQN 906
Query: 945 NWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAPRAWYKKI 1004
WKIHQMDVKSAFLNG LEEEVY+EQP GY+V+G+EDKV RLKKALYGLKQAPRAW +I
Sbjct: 907 KWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRI 966
Query: 1005 DSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFRGAMISYFE 1064
D YF + F +CP+EH LYIK I D+LI CLYVDDLIFTGNN M EF+ M FE
Sbjct: 967 DKYFKEKDFIKCPYEHALYIK-IQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFE 1025
Query: 1065 MTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKLKLTRESD 1124
MTD+GLMSY+LGIEV Q+ +GIFI+Q+ YA ++LKKFKM+ S P+ TP+E +KL+++ +
Sbjct: 1026 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEE 1085
Query: 1125 GKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILRYIKGTLT 1184
G+ VD T +KSL+GSLRYLT TRPDI+Y VG++SRYME P +H + AKRILRYIKGT+
Sbjct: 1086 GEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVN 1145
Query: 1185 EGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHVVALSTAEA 1244
G+ Y SD KLVGY+DSDW GD + RKSTSG+ F++G A +W SKKQ +V LST EA
Sbjct: 1146 FGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEA 1205
Query: 1245 EYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIRFH 1304
EY+ ATSC +WLR +L+ + Q PTKI+ DNKSAIAL+KNPVFH RSKHID R+H
Sbjct: 1206 EYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYH 1265
Query: 1305 KIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMMKA 1351
IRE +++K+V +EY T +Q+ADIFTKPLK E F K++ +LG+ K+
Sbjct: 1266 YIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGVAKS 1312
>gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 1257 bits (3252), Expect = 0.0
Identities = 655/1372 (47%), Positives = 879/1372 (63%), Gaps = 120/1372 (8%)
Query: 7 NIVWSGPKLNSELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADELA------------R 54
N+ + P L +++ W M L AH++W VE G + +E + R
Sbjct: 5 NVPFQVPVLTKS-NYDNWSLQMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSR 63
Query: 55 RRDQLALSQILQGIDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERY 114
+RD+ AL I QG+D F K+ A ++KEAW+ L+ S+KGV++ +K +LQ+LR E+E
Sbjct: 64 KRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGVDQVKKVRLQTLRGEFEAL 123
Query: 115 EMSSSETVDQYFTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTD 174
+M E V YF+RV+ + N ++ GE + D +++EK+LR++ +K++H+VT I E+ D +
Sbjct: 124 QMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLE 183
Query: 175 TLSVAELQGSIESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRG 234
+++ +L GS++++ E+ +K KE+ ++ +N+ E +
Sbjct: 184 AMTIEQLLGSLQAY-----EEKKKKKEDIVEQVLNMRITKEENGQ--------------- 223
Query: 235 NFRGRGRGSFRGRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNN 294
+++ RG G RGRGRG + G GRG+ E N
Sbjct: 224 SYQRRGGGEVRGRGRGGY----------------------------GNGRGWRPHEDNTN 255
Query: 295 GCFNCGKYGHKAADCRYKHQANMAENSYQHFGESSQNQHSLFLASNTLSEEE--NIWYLD 352
K +++ +AN E E Q + L +AS E+E + WYLD
Sbjct: 256 QRAPSNK--------KFEEKANYVE-------EKIQEEDMLLMASYKKDEQEENHKWYLD 300
Query: 353 TGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAP 412
+G SNHMCG+K +F+ LDE+V+ V G+ S + ++GKG I IRLK+G FI +V+Y P
Sbjct: 301 SGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIP 360
Query: 413 GLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFSCLS 472
+ N+LS+GQL EK Y++++ ++ D ITKV MS NR+F L I++D CL
Sbjct: 361 SMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK 420
Query: 473 SIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESFPTG 532
+ WLWH+RFGH +F GL LSRKE V GLP + P+ VCE C +GK+ + SFP
Sbjct: 421 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 480
Query: 533 KSWRAKKLLEIVHSDLCSVEIPTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFK 592
S RA+K LE++H+D+C P +KSE FK FK
Sbjct: 481 SSSRAQKPLELIHTDVCGPIKPKS----------------------LEKSEVFKIFKKFK 518
Query: 593 AFVEKQSGCPIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKNRTIM 650
A VEK+SG IK +R+DRG E+ + E +GI+ QLT +PQQNGVAERKNRTI+
Sbjct: 519 AHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTIL 578
Query: 651 DMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGC 710
+M R MLK+K++PKE WAEAVA AVY+LNR PTKSV KTP+EA SGR+P + HLRVFG
Sbjct: 579 EMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGS 638
Query: 711 IAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWS 770
IA+AHVPD+ R KLDDK E+ IFIGY +NSK YKLYNP+TKK IISR++ FDE G W+W+
Sbjct: 639 IAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWN 698
Query: 771 SKSQKEPIVTPNDYEEEDEHVDTTPDEPDEPETSN---------REKRNRRLPA--RLQD 819
S + + EEDE T + P E T+ E + R P +Q+
Sbjct: 699 SNEEDYNFFP---HFEEDEPEPTREEPPSEEPTTRPTSLTSSQIEESSSERTPRFRSIQE 755
Query: 820 CVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTELP 879
T+N E + F LFA+CEP+ F+EA + W AMDEEI +I+KN TWELT LP
Sbjct: 756 LYEVTENQ---ENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLP 812
Query: 880 PDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRMLIS 939
K IGVKWVYK K GE++RYKARLVAKGY Q+ GIDY EVFAPVARL+T+R++IS
Sbjct: 813 NGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIIS 872
Query: 940 LSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAPRA 999
L+AQN WKIHQMD K AFLNG EEEVY+EQP GY+V+G+EDKV RLKKALYGLKQAPRA
Sbjct: 873 LAAQNKWKIHQMDFKLAFLNGDFEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRA 932
Query: 1000 WYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFRGAM 1059
W +ID YF + F +CP+EH LYIK I D+LI CLYVDDLIFTGNN M EF+ M
Sbjct: 933 WNTRIDKYFKEKDFIKCPYEHALYIK-IQKEDILIACLYVDDLIFTGNNPSMFEEFKKEM 991
Query: 1060 ISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKLKL 1119
FEMTD+GLMSY+LGIEV Q+ + IFI+Q+ YA ++LKKFKM+ S P+ TP+E +KL
Sbjct: 992 TKEFEMTDIGLMSYYLGIEVKQEDNRIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKL 1051
Query: 1120 TRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILRYI 1179
+++ +G+ VD T +KSL+GSLRYLT TRPDI+Y VG++SRYME P +H + AKRILRYI
Sbjct: 1052 SKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYI 1111
Query: 1180 KGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHVVAL 1239
KGT+ G+ Y SD KLVGY+DSDW D + RKSTSG+ F++G A +W SKKQ +V L
Sbjct: 1112 KGTVNFGLHYSTTSDYKLVGYSDSDWGRDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTL 1171
Query: 1240 STAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHI 1299
ST EAEY+ ATSC +WLR +L+ + Q PTKI+ DNKSAIAL+KNPVFH RSKHI
Sbjct: 1172 STCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHI 1231
Query: 1300 DIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMMKA 1351
D R+H IRE +++K+V +EY T +Q+ADIFTKPLK E F K++ +LG+ K+
Sbjct: 1232 DTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGVAKS 1283
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
gi|11278363|pir||T49313 copia-type reverse
transcriptase-like protein - Arabidopsis thaliana
Length = 1272
Score = 1205 bits (3118), Expect = 0.0
Identities = 643/1380 (46%), Positives = 870/1380 (62%), Gaps = 155/1380 (11%)
Query: 7 NIVWSGPKLNSELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADELA------------R 54
N+ + P L +++ W M L AH++W VE G + +E + R
Sbjct: 5 NVPFQVPVLTKS-NYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSR 63
Query: 55 RRDQLALSQILQGIDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERY 114
+RD+ AL I QG+D F K+ A ++KEAW+ L+ S+KG ++ +K +LQ+LR E+E
Sbjct: 64 KRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEAL 123
Query: 115 EMSSSETVDQYFTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTD 174
+M E V YF+RV+ + N ++ GE + D +++EK+LR++ +K++H+VT I E+ D +
Sbjct: 124 QMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLE 183
Query: 175 TLSVAELQGSIESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRG 234
+++ +L GS++++ E+ +K KE+ ++ +N+ E + ++ G G
Sbjct: 184 AMTIEQLLGSLQAY-----EEKKKKKEDIVEQVLNMQITKEENGQ-------SYQRRGGG 231
Query: 235 NFRGRGRGSFRGRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNN-RGRGRGYYNQ--ER 291
RGRGRG + G GRG WR + N N G N+ RGRG+G+ ++
Sbjct: 232 QVRGRGRGGY-GNGRG----WRPHEDNT----------NQRGENSSRGRGKGHPKSRYDK 276
Query: 292 TNNGCFNCGKYGHKAADCR------YKHQANMAENSYQHFGESSQNQHSLFLASNTLSEE 345
++ C+NCGK+GH A++C+ +K +AN E E Q + L +AS E+
Sbjct: 277 SSVKCYNCGKFGHYASECKAPSNKKFKEKANYVE-------EKIQEEDMLLMASYKKDEQ 329
Query: 346 E--NIWYLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQN 403
E + WYLD+G SNHMCG+K +F+ LDE+V+ V G+ S + ++GKG I IRLK+G
Sbjct: 330 EENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQ 389
Query: 404 FIGDVFYAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRI 463
FI +V+Y P + N+LS+GQL EK Y++++ ++ D ITKV MS NR+F L I
Sbjct: 390 FISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNI 449
Query: 464 QHDQFSCLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGK 523
++D CL + WLWH+RFGH +F GL LSRKE V GLP + P+ VCE C +G
Sbjct: 450 RNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGN 509
Query: 524 KHRESFPTGKSWRAKKLLEIVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVYFLKQKS 582
+ + SFP S RA+K LE++H+D+C ++ + G YF+ FIDDFSRK WVYFLK+KS
Sbjct: 510 QFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKS 569
Query: 583 EAVDSFKTFKAFVEKQSGCPIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNG 640
E + FK FKA VEK+SG IK +R+D G E+ + E +GI+ QLT +PQQNG
Sbjct: 570 EVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNG 629
Query: 641 VAERKNRTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRP 700
VAERKNRTI++M R MLK+K++PKE WAEAVA AVY+LNR PTKSV KTP+EA SGR+P
Sbjct: 630 VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689
Query: 701 SIRHLRVFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVT 760
+ HLRVFG IA+AHVPD+ R KLDDK E+ IFIGY +NSK YKLYNP+TKK IISR++
Sbjct: 690 GVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIV 749
Query: 761 FDEGGMWNWSSKSQKEPIVTPNDYEEEDEHVDTTP--DEPDEPETSN-----REKRNRRL 813
FDE G W+W+S ++++ P+ E++ E P +EP P TS E + R
Sbjct: 750 FDEEGEWDWNS-NEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERT 808
Query: 814 PA--RLQDCVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNK 871
P +Q+ T+N E + F LFA+CEP+ F+EA + W AMDEEI +I+KN
Sbjct: 809 PRFRSIQELYEVTENQ---ENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKND 865
Query: 872 TWELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARL 931
TWELT LP K IGVKWVYK K GE++RYKARLVAKGY Q+ GIDY E+FAPVARL
Sbjct: 866 TWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARL 925
Query: 932 DTIRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALY 991
+T+R++ISL+AQN WKIHQMDVKSAFLNG LEEEVY+EQP GY+V+G+EDKV RLKK LY
Sbjct: 926 ETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLY 985
Query: 992 GLKQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKM 1051
GLKQAPRAW +ID YF + F +CP+EH LYIK I D+LI CLYVDDLIFTGNN M
Sbjct: 986 GLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK-IQKEDILIACLYVDDLIFTGNNPSM 1044
Query: 1052 IAEFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPIST 1111
EF+ M FEMTD+GLMSY+LGIEV Q+ +GIFI+Q+ YA ++LKKFKM+ S P
Sbjct: 1045 FEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNP--- 1101
Query: 1112 PVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQG 1171
SL+GSLRYLT TRPDI+Y VG++SRYME P +H +
Sbjct: 1102 -----------------------SLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKA 1138
Query: 1172 AKRILRYIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSS 1231
AKRILRYIKGT+ G+ Y +TS Y
Sbjct: 1139 AKRILRYIKGTVNFGLHYS-----------------------TTSDYKL----------- 1164
Query: 1232 KKQHVVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPV 1291
+WLR +L+ + Q PTKI+ DNKSAIAL+KNPV
Sbjct: 1165 --------------------VVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPV 1204
Query: 1292 FHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMMKA 1351
FH RSKHID R+H IRE +++K+V +EY T +Q+ADIFTKPLK E F K++ +LG+ K+
Sbjct: 1205 FHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGVAKS 1264
>gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1333
Score = 1157 bits (2993), Expect = 0.0
Identities = 618/1350 (45%), Positives = 859/1350 (62%), Gaps = 68/1350 (5%)
Query: 20 DFNYWEFMMTTHLKAHNIWSYVESGLQQG-ADELA--RRRDQLALSQILQGIDYSIFGKI 76
++ +W M T K+ +W VE+G+ +G A+++ R+RD AL I Q +D IF +I
Sbjct: 21 NYQFWSLKMKTLFKSQELWDIVETGIPEGNANQMREHRKRDSKALFTIQQALDDEIFPRI 80
Query: 77 ANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFTRVINIVNKM 136
+ +TSK+AW+ILK + G +K KLQ+LRR++E M+ +E+V Y +R IVN+M
Sbjct: 81 SAVETSKQAWEILKQEYFGDDKVITVKLQTLRRDFETLFMNENESVQGYLSRTSAIVNRM 140
Query: 137 RVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIESHVNRILEKT 196
R YGE I + VV K+LR++ K++HVVT I ES D T S EL S+ +H +R+
Sbjct: 141 RSYGEKIDNQIVVSKVLRSLTTKFEHVVTAIEESKDLSTYSFDELMSSLLAHEDRLNRSR 200
Query: 197 EKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGRGRGNFNQWR 256
EKV+E+A + + E S G+A N+ GRG+ GRG+FRGRGRG
Sbjct: 201 EKVQEKAFQVK------GEFSYKGKAE-----NSAGRGH----GRGNFRGRGRGG----- 240
Query: 257 DNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAADCRYKHQAN 316
G+G N G + Q ++N C C K+GHK DC K +
Sbjct: 241 -----------SGRGRNQVGE---------FRQYKSNIQCRYCKKFGHKEVDCWTKQKD- 279
Query: 317 MAENSYQHFGESSQNQHSLFLASNTLSEEEN-IWYLDTGCSNHMCGKKELFSSLDETVKS 375
E +F ++ + + LF+AS+ ++E N +W++D+GCSNHM K LF LDE+ KS
Sbjct: 280 --EQKDANFTQNVEEESKLFMASSQITESANAVWFIDSGCSNHMSSSKSLFRDLDESQKS 337
Query: 376 TVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMGQLSEKDYNMQIHK 435
V+ G++ + IEGKG + I+ G+ F+ DV Y P L HNLLS+GQL Y++ +
Sbjct: 338 EVRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVPTLAHNLLSVGQLMTSGYSVVFYD 397
Query: 436 GYCTLIDG-NGRFITKVKMSHNRLFPLRIQHDQFSCLSSIIPNDDWLWHMRFGHFHFSGL 494
C + D +GR I +V M+ N++FPL I + S L N+ LWH+R+GH + + L
Sbjct: 398 NACDIKDKESGRTIARVPMTQNKMFPLDISNVGNSALVVKEKNETNLWHLRYGHLNVNWL 457
Query: 495 NYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESFPTGKSWRAKKLLEIVHSDLCS-VEI 553
L +K+ V GLP +K +CE C GK+ R+SFP GKSWRA LE+VH+DLC +++
Sbjct: 458 KLLVQKDMVIGLPNIK-ELDLCEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMKM 516
Query: 554 PTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKAFVEKQSGCPIKALRTDRGQE 613
+ GG RYF+ F DD+SR +WVYFLK KSE ++FK FKAFVE QSG IK+LRTDRG E
Sbjct: 517 ESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGE 576
Query: 614 YLVGTD--FFEQHGIQHQLTTRYTPQQNGVAERKNRTIMDMVRCMLKAKQMPKEFWAEAV 671
+L F E++GI+ +LT YTP+QNGVAERKNRT+++M R LKAK +P FW EAV
Sbjct: 577 FLSNDFNLFCEENGIRRELTAPYTPEQNGVAERKNRTVVEMARSSLKAKGLPDYFWGEAV 636
Query: 672 ATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGCIAYAHVPDQIRKKLDDKGERC 731
AT VY LN PTK V TP EA +G++P + HLR+FGCIAYA V KLD+K +C
Sbjct: 637 ATVVYFLNISPTKDVWNTTPLEAWNGKKPRVSHLRIFGCIAYALV--NFHSKLDEKSTKC 694
Query: 732 IFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWSSKSQKEPI-VTPNDYEE---- 786
IF+GY SKAY+LYNP + KVIISR+V F+E WN++S + I + P D E
Sbjct: 695 IFVGYSLQSKAYRLYNPISGKVIISRNVVFNEDVSWNFNSGNMMSNIQLLPTDEESAVDF 754
Query: 787 ----EDEHVDTTPDEPDEPETSNREKRNRRLPARLQDCVLGTDNDPSDEEIIN----FAL 838
V ++ P P T+ + P L+ +P +N FAL
Sbjct: 755 GNSPNSSPVSSSVSSPIAPSTTVAPDESSVEPIPLRRSTREKKPNPKYSNTVNTSCQFAL 814
Query: 839 FADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTELPPDKKPIGVKWVYKTKYKPS 898
+P+ +EEA W AM EEI AIE+N TWEL + P K IG+KWV++TKY
Sbjct: 815 LVS-DPICYEEAVEQSEWKNAMIEEIQAIERNSTWELVDAPEGKNVIGLKWVFRTKYNAD 873
Query: 899 GEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQNNWKIHQMDVKSAFL 958
G I ++KARLVAKGY Q+ G+D+ E F+PVAR +T+R++++L+AQ + ++Q DVKSAFL
Sbjct: 874 GSIQKHKARLVAKGYSQQQGVDFDETFSPVARFETVRVVLALAAQLHLPVYQFDVKSAFL 933
Query: 959 NGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAPRAWYKKIDSYFIQNGFQRCPF 1018
NG LEEEVYV QP G+++ G E+KVY+L+KALYGLKQAPRAWY KIDS+F +GF+R
Sbjct: 934 NGDLEEEVYVSQPQGFMITGNENKVYKLRKALYGLKQAPRAWYSKIDSFFQGSGFRRSDN 993
Query: 1019 EHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFRGAMISYFEMTDLGLMSYFLGIE 1078
E TLY+K + L+VCLYVDD+I+ G++ ++ +F+ M+ FEM+DLGL+ YFLG+E
Sbjct: 994 EPTLYLKKQGTDEFLLVCLYVDDMIYIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLE 1053
Query: 1079 VIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKLKLTRESDGKRVDSTHYKSLIG 1138
VIQ KDGIFISQKKYA D+LKKF+M + + +TP+ KL R ++ + ++SL+G
Sbjct: 1054 VIQDKDGIFISQKKYAEDLLKKFQMMNCEVATTPMNINEKLQRADGTEKANPKLFRSLVG 1113
Query: 1139 SLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILRYIKGTLTEGIFYGNNSDVKLV 1198
L YLT TRPDI + V ++SR+++ P H AKR+LRY+ GT GI+Y + +LV
Sbjct: 1114 GLNYLTHTRPDIAFSVSVVSRFLQSPTKQHFGAAKRVLRYVAGTTDFGIWYSKAPNFRLV 1173
Query: 1199 GYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHVVALSTAEAEYITATSCATQTVW 1258
G+TDSD+AG + RKSTSG F G+G ++WSSKKQ VALST+EAEY A+ A Q +W
Sbjct: 1174 GFTDSDYAGCLDDRKSTSGSCFSFGSGVVTWSSKKQETVALSTSEAEYTAASLAARQALW 1233
Query: 1259 LRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIRFHKIRELIAEKEVVIE 1318
LR++LE +EQ T+I+ D+KSAIA++KNP FHGR+KHID+++H IR L+A+ +V++
Sbjct: 1234 LRKLLEDFSYEQKESTEIFSDSKSAIAMAKNPSFHGRTKHIDVQYHFIRTLVADGRIVLK 1293
Query: 1319 YCPTKEQIADIFTKPLKIESFYKLKKMLGM 1348
+C T EQ ADIFTK L + LG+
Sbjct: 1294 FCSTNEQAADIFTKSLPQAKHEYFRLQLGV 1323
>emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278365|pir||T47841
hypothetical protein T2O9.150 - Arabidopsis thaliana
Length = 1339
Score = 1149 bits (2972), Expect = 0.0
Identities = 610/1378 (44%), Positives = 848/1378 (61%), Gaps = 112/1378 (8%)
Query: 21 FNYWEFMMTTHLKAHNIWSYVESGL-------------QQGADELARRRDQLALSQILQG 67
+++W M L++ +W VE G+ Q+ A E A+ +D + + Q
Sbjct: 19 YDFWSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKLKDLKVKNFLFQA 78
Query: 68 IDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFT 127
ID I I + TSK W+ +K ++G K ++++LQ+LR+E+E M E +D +
Sbjct: 79 IDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKEGEKIDTFLG 138
Query: 128 RVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIES 187
R + +VNKM+ GE ++ S +V KILR++ K+++VV +I ES+D TLS+ EL GS+
Sbjct: 139 RTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSIDELHGSLLV 198
Query: 188 HVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGR 247
H R+ ++ E+ALK + + SQ GRGRG FRG
Sbjct: 199 HEQRLNGHVQE--EQALK----VTHEERPSQ-------------------GRGRGVFRG- 232
Query: 248 GRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAA 307
S RGRGRG R C+ C GH
Sbjct: 233 -----------------------------SRGRGRGRGRSGTNRAIVECYKCHNLGHFQY 263
Query: 308 DC-RYKHQANMAENSYQHFGESSQNQHSLFLASNTLSEEENIWYLDTGCSNHMCGKKELF 366
+C ++ AN AE E + ++ N + +E +W+LD+GCSNHM G KE F
Sbjct: 264 ECPEWEKNANYAE-----LEEEEELLLMAYVEQNQANRDE-VWFLDSGCSNHMTGSKEWF 317
Query: 367 SSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMGQLSE 426
S L+E TVK GN++ + + GKG + +++ +G I +V+Y P L +NLLS+GQL E
Sbjct: 318 SELEEGFNRTVKLGNDTRMSVVGKGSVKVKV-NGVTQVIPEVYYVPELRNNLLSLGQLQE 376
Query: 427 KDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFSCL----SSIIPNDDWLW 482
+ + I G C + + I + MS NR+F L Q + L ++ ++ LW
Sbjct: 377 RGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQKNSLCLQTEEVMDKENHLW 436
Query: 483 HMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESFPTGKSWRAKKLLE 542
H RFGH + GL L+ K+ V GLP++K +C C GK+HRES SW++ L+
Sbjct: 437 HCRFGHLNQEGLKLLAHKKMVIGLPILKATKEICAICLTGKQHRESMSKKTSWKSSTQLQ 496
Query: 543 IVHSDLCSVEIP-TPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKAFVEKQSGC 601
+VHSD+C P + G RY ++FIDDF+RK WVYFL +KSEA +FK FKA VEK+ G
Sbjct: 497 LVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGA 556
Query: 602 PIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKNRTIMDMVRCMLKA 659
+ LRTDRG E+ +F HGI QLT +TPQQNGVAERKNRTIM+ VR ML
Sbjct: 557 FLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSMLSE 616
Query: 660 KQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGCIAYAHVPDQ 719
+Q+PK FW+EA +V+I NR PT +V+ TPEEA SGR+P + + RVFGCI Y H+PDQ
Sbjct: 617 RQVPKMFWSEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQ 676
Query: 720 IRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWSSKSQKEPIV 779
R KLDDK ++C+F+G SKA++LY+P KK++IS+DV FDE W+W + V
Sbjct: 677 KRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQADVEAKEV 736
Query: 780 TPNDYEEEDE---------------HVDT----------TPDEPDEPETSNREKRNRRLP 814
T +E+DE HV + P P + + R RR P
Sbjct: 737 TLECGDEDDEKNSEVVEPIAVASPNHVGSDNNVSSSPILAPSSPAPSPVAAKVTRERRPP 796
Query: 815 ARLQDCVLGTDNDPSDE-EIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTW 873
+ D G + + ++ + + +P+ F++A +D+ W +AM+ EI +I KN TW
Sbjct: 797 GWMADYETGEGEEIEENLSVMLLMMMTEADPIQFDDAVKDKIWREAMEHEIESIVKNNTW 856
Query: 874 ELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDT 933
ELT LP PIGVKWVYKTK GE+D+YKARLVAKGY Q GIDY EVFAPVARLDT
Sbjct: 857 ELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAPVARLDT 916
Query: 934 IRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGL 993
+R ++++S+Q NW+I Q+DVKSAFL+G L+EEVYV QP G++ G+E+KVY+L+KALYGL
Sbjct: 917 VRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKLRKALYGL 976
Query: 994 KQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIA 1053
KQAPRAWY +I++YF++ F+RCP EHTL+ K G++LIV LYVDDLIFTG++ M
Sbjct: 977 KQAPRAWYSRIEAYFLKEEFERCPSEHTLFTK-TRVGNILIVSLYVDDLIFTGSDKAMCD 1035
Query: 1054 EFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPV 1113
EF+ +M+ FEM+DLG M +FLGIEV Q GIFI Q++YA ++L +F M+ S + P+
Sbjct: 1036 EFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESNAVKNPI 1095
Query: 1114 EEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAK 1173
KLT++ +G++VD T +K L+GSL YLT TRPD++YGV L+SR+M +P +SH AK
Sbjct: 1096 VPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMSHWLAAK 1155
Query: 1174 RILRYIKGTLTEGIFY--GNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSS 1231
RILRY+KGT+ GIFY N +KL+ +TDSD+AGD R+STSG+ F + +GAI W+S
Sbjct: 1156 RILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMASGAICWAS 1215
Query: 1232 KKQHVVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPV 1291
KKQ VVALST EAEYI A CA Q VWLR++LE + E+ + T I CDN S I LSK+PV
Sbjct: 1216 KKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTIQLSKHPV 1275
Query: 1292 FHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMM 1349
HG+SKHI++RFH +R+L+ V +EYCPT++Q+ADIFTKPLK+E F KL+ +LGM+
Sbjct: 1276 LHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQVADIFTKPLKLEQFEKLRALLGMV 1333
>gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50919599|ref|XP_470160.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1335
Score = 1130 bits (2923), Expect = 0.0
Identities = 627/1375 (45%), Positives = 834/1375 (60%), Gaps = 97/1375 (7%)
Query: 20 DFNYWEFMMTTHLKAHNIWSYVESGLQQ-GADELA-----------RRRDQLALSQILQG 67
+++ W M T L + +W VE+G Q+ A E R D AL I QG
Sbjct: 13 NYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQG 72
Query: 68 IDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFT 127
+ S+F +I AK SKEAWD LK +G +K KLQ+LRR+++ M SE V YF+
Sbjct: 73 VAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKESEKVKDYFS 132
Query: 128 RVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIES 187
RVI IVN+MR+YGEDI D KVVEKIL ++P KY+++V ES D + S+ES
Sbjct: 133 RVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAATEESKDLS-------KDSLES 185
Query: 188 HVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGR 247
H R L++ E A +S++ S + +R R NF G F R RG F+
Sbjct: 186 HEERKLQREGSSIENAFQSKL-------SFRPQNSRFRGNFQKNG---FPMRDRGYFQKN 235
Query: 248 GRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAA 307
G F++ +++ +G +N + + + C C + GH A
Sbjct: 236 G---FSRQKEDGQER---REKGTSSSNLWCDICQKSSHTTDMCWKKMTCNKCKRKGHIAK 289
Query: 308 DCRYK--HQANMAENSYQHFGESSQNQHSLFLASNTLSEEENIWYLDTGCSNHMCGKKEL 365
CR + ++AN ++ E +++ +F E++++W +D+GC+NHM L
Sbjct: 290 YCRTREINRANFSQ-------EKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNL 342
Query: 366 FSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMGQLS 425
F +D + + + GN S EGKG +A++ DG + FI DV P L NLLS+GQL
Sbjct: 343 FREMDSSYHAKIHMGNGSIAQSEGKGTVAVQTADGPK-FIKDVLLVPDLKQNLLSIGQLL 401
Query: 426 EKDYNMQIHKGYCTLIDG-NGRFITKVKMSHNRLFPLRIQHDQFSCLSSIIPNDDWLWHM 484
E Y + C ++D N R + K+ M NR F LR+ H L S + D LWH
Sbjct: 402 EHGYAVYFEDFSCKILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSEVDISD-LWHK 460
Query: 485 RFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESFPTGKSWRAKKLLEIV 544
R GH ++ L L K V GLP + + S CE C GK+ R SFP +WRA LE+V
Sbjct: 461 RMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELV 520
Query: 545 HSDLCSVEIPT--PGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKAFVEKQSGCP 602
H+D+ ++PT GG YFITFIDD++R WVYFLK+KS A++ FK FKA VE QS
Sbjct: 521 HADIVG-KVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRK 579
Query: 603 IKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKNRTIMDMVRCMLKAK 660
IK LR+D+G+EY+ + E GI+ QLT Y+ QQNGVAERKNRTI DM ML+ K
Sbjct: 580 IKVLRSDQGREYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDK 639
Query: 661 QMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGCIAYAHVPDQI 720
MPK FWAEAV TAVYILNR PTK+V +TP EA G++P I H+RVFGCI YA VP Q
Sbjct: 640 GMPKSFWAEAVNTAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQK 699
Query: 721 RKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWSSKSQKEPIVT 780
R K D+K +RCIF+GY K Y+LYN E KK+IISRD FDE WNW S +
Sbjct: 700 RVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDAIFDESATWNWKSPEASSTPLL 759
Query: 781 PND------------YEEEDEHVDTTPDEP-------------DEPETSNREKRNRRLPA 815
P +E ED P P E + S E RR+ +
Sbjct: 760 PTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQISTPESAPRRVRS 819
Query: 816 RLQDCVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWEL 875
++ +L + + E F ++ EP +F+EA + +NWIKAM++EI+ IEKN TWEL
Sbjct: 820 MVE--LLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIEKNNTWEL 877
Query: 876 TELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIR 935
+ P D++ IGVKWVYKTK P G + +YKARLVAKG+KQKPGIDY+E +APVARL+TIR
Sbjct: 878 VDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIR 937
Query: 936 MLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQ 995
+I+L+AQ WKI+Q+DVKSAFLNG L+EE+YVEQP G+ V+G E+KV+RLKKALYGLKQ
Sbjct: 938 TIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQ 997
Query: 996 APRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEF 1055
APRAWY +ID YFIQ GF + E TLY+ D+LIV LYVDDLI+TGN+ KM+ +F
Sbjct: 998 APRAWYSQIDKYFIQKGFAKSISEPTLYVNKTGT-DILIVSLYVDDLIYTGNSEKMMQDF 1056
Query: 1056 RGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEE 1115
+ M+ +EM+DLGL+ YFLG+EV Q +GIFISQ+KYA +ILKKFKM++ K ++TP+
Sbjct: 1057 KKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLP 1116
Query: 1116 KLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRI 1175
K + D T Y+SL+GSL YLTATRPDI++ LLSRYM P + AKR+
Sbjct: 1117 NEKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRV 1176
Query: 1176 LRYIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQH 1235
LRYIKGT GI+Y + KL+GYTDSDWAG + KSTSGYAF LG
Sbjct: 1177 LRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLG------------ 1224
Query: 1236 VVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGR 1295
+AEAEY+ A+ +Q VWLRRI+E + +Q PT IYCD+KSAIA+S+NPV H R
Sbjct: 1225 -----SAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSHDR 1279
Query: 1296 SKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMMK 1350
+KHI I++H IRE + +EV +E+C T EQ+ADIFTK L E F + ++++G+ K
Sbjct: 1280 TKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEKFVRDRELIGVCK 1334
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
gi|25301683|pir||E86451 probable copia-type polyprotein,
28768-32772 [imported] - Arabidopsis thaliana
Length = 1334
Score = 1102 bits (2849), Expect = 0.0
Identities = 601/1383 (43%), Positives = 839/1383 (60%), Gaps = 118/1383 (8%)
Query: 20 DFNYWEFMMTTHLKAHNIWSYVESGLQQ--------GAD--ELARR--RDQLALSQILQG 67
D+ +W +M +++ W +E+G+ + GA ELA + +D + +
Sbjct: 15 DYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVKNYLFAS 74
Query: 68 IDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFT 127
ID +I I +TSK+ W+ +K ++G ++ Q ++LQ LRR +E EM ET+ YF+
Sbjct: 75 IDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGETITGYFS 134
Query: 128 RVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIES 187
RV+ I N MR GED+ DSKVVEKILRT+ K+ +VV I ES++ L+V LQ S+
Sbjct: 135 RVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTVDGLQSSLMV 194
Query: 188 HVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGR 247
H + V+E LK++ +GGRG RG RGR
Sbjct: 195 HEQNL--SRHDVEERVLKAETQWRP-----------------DGGRG----RGGSPSRGR 231
Query: 248 GRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAA 307
GRG + +GRGRGY N++ CF C K GH A
Sbjct: 232 GRGGY---------------------------QGRGRGYVNRDTVE--CFKCHKMGHYKA 262
Query: 308 DC-RYKHQANMAENSYQHFGESSQNQHSLFLASNTLS---EEENIWYLDTGCSNHMCGKK 363
+C ++ +AN E + L L ++ EE+ IW+LD+GCSNHMCG +
Sbjct: 263 ECPSWEKEANYVEM-----------EEDLLLMAHVEQIGDEEKQIWFLDSGCSNHMCGTR 311
Query: 364 ELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMGQ 423
E F LD K V+ G++ + +EGKG++ + + DG I DV++ PGL +NL S+GQ
Sbjct: 312 EWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEV-DGRIQVISDVYFVPGLKNNLFSVGQ 370
Query: 424 LSEKDYNMQIHKGYCTLIDGNG-RFITKVKMSHNRLFPLRI------QHDQFSCLSSIIP 476
L +K I C + R + M+ NR+F + + ++ CL +I
Sbjct: 371 LQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQ-VIG 429
Query: 477 NDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKI--PSGVCETCQMGKKHRESFPTGKS 534
+ +WH RFGH + GL L+ KE V GLP + VC+ C GK+ RES P +
Sbjct: 430 KANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESA 489
Query: 535 WRAKKLLEIVHSDLCSVEIP-TPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKA 593
W++ ++L++VH+D+C P + G RY + FIDDFSRK W Y L +KSE FK FKA
Sbjct: 490 WKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKA 549
Query: 594 FVEKQSGCPIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKNRTIMD 651
VE++SG + LR+DRG EY ++ ++ GI+ QLT YTPQQNGVAERKNR++M+
Sbjct: 550 EVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMN 609
Query: 652 MVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGCI 711
M RCML +P++FW EAV AVYILNR P+K++ + TPEE S +PS+ HLR+FG +
Sbjct: 610 MTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSL 669
Query: 712 AYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWSS 771
AYA VP Q R KLD+K +C+ G SKAY+LY+P T K++ISRDV FDE W W
Sbjct: 670 AYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWED 729
Query: 772 KSQKEPIVTPN-------------------DYEEEDEHVDTTPDEPDE--PETSNREKRN 810
KS +E +V N D EE +E +T + + P R
Sbjct: 730 KSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETVAETVHQNLPAVGTGGVRQ 789
Query: 811 RRLPARLQDCVLGTDND--PSDEEIINFALF-ADCEPVTFEEASRDENWIKAMDEEINAI 867
R+ P ++D V+G DEE ALF +PV FEEA++ E W KAM+ EI +I
Sbjct: 790 RQQPVWMKDYVVGNARVLITQDEEDEVLALFIGPDDPVCFEEAAQLEVWRKAMEAEITSI 849
Query: 868 EKNKTWELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAP 927
E+N TWEL ELP + K IG+KW++KTK+ GE+D++KARLVAKGY Q+ G+D++EVFAP
Sbjct: 850 EENNTWELVELPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAP 909
Query: 928 VARLDTIRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLK 987
VA+ DTIR+++ L+A+ W + Q+DVKSAFL+G L+E+V+VEQP G+ V + KVY+LK
Sbjct: 910 VAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLK 969
Query: 988 KALYGLKQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGN 1047
KALYGLKQAPRAWY +I+ +F + GF++C EHTL++K + D L+V +YVDDLI+TG+
Sbjct: 970 KALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKK-ERSDFLVVSVYVDDLIYTGS 1028
Query: 1048 NSKMIAEFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSK 1107
+ +MI F+ +M+ F MTDLG M YFLG+EVIQ + GIFI+Q+KYA++I+KK+ ME
Sbjct: 1029 SMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCN 1088
Query: 1108 PISTPVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVS 1167
+ P+ KLT+ G VD T +K LIGSLRYLT TRPD+++ V L+SRYME P
Sbjct: 1089 SVKNPIVPGQKLTKAGAGDAVDPTEFKQLIGSLRYLTTTRPDLIFSVNLVSRYMESPNEQ 1148
Query: 1168 HLQGAKRILRYIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAI 1227
HL KRILRY++GTL GI Y +LVG+ DSD+AGD + RKSTSGY F LG GAI
Sbjct: 1149 HLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAI 1208
Query: 1228 SWSSKKQHVVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALS 1287
+W+SKKQ +V LST EAE+++A+ A Q VWLR +LE + Q T ++CDN S I LS
Sbjct: 1209 AWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLS 1268
Query: 1288 KNPVFHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLG 1347
KNPV HGRSKHI +R+H +REL+ E + ++YC T +Q+ADI TK +K E F +L+ +G
Sbjct: 1269 KNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFEELRGRMG 1328
Query: 1348 MMK 1350
+ +
Sbjct: 1329 VRR 1331
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 1102 bits (2849), Expect = 0.0
Identities = 601/1383 (43%), Positives = 839/1383 (60%), Gaps = 118/1383 (8%)
Query: 20 DFNYWEFMMTTHLKAHNIWSYVESGLQQ--------GAD--ELARR--RDQLALSQILQG 67
D+ +W +M +++ W +E+G+ + GA ELA + +D + +
Sbjct: 15 DYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKTVKDHKVKNYLFAS 74
Query: 68 IDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFT 127
ID +I I +TSK+ W+ +K ++G ++ Q ++LQ LRR +E EM ET+ YF+
Sbjct: 75 IDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGETITGYFS 134
Query: 128 RVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIES 187
RV+ I N MR GED+ DSKVVEKILRT+ K+ +VV I ES++ L+V LQ S+
Sbjct: 135 RVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTVDGLQSSLMV 194
Query: 188 HVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGR 247
H + V+E LK++ +GGRG RG RGR
Sbjct: 195 HEQNL--SRHDVEERVLKAETQWRP-----------------DGGRG----RGGSPSRGR 231
Query: 248 GRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAA 307
GRG + +GRGRGY N++ CF C K GH A
Sbjct: 232 GRGGY---------------------------QGRGRGYVNRDTVE--CFKCHKMGHYKA 262
Query: 308 DC-RYKHQANMAENSYQHFGESSQNQHSLFLASNTLS---EEENIWYLDTGCSNHMCGKK 363
+C ++ +AN E + L L ++ EE+ IW+LD+GCSNHMCG +
Sbjct: 263 ECPSWEKEANYVEM-----------EEDLLLMAHVEQIGDEEKQIWFLDSGCSNHMCGTR 311
Query: 364 ELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMGQ 423
E F LD K V+ G++ + +EGKG++ + + DG I DV++ PGL +NL S+GQ
Sbjct: 312 EWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEV-DGRIQVISDVYFVPGLKNNLFSVGQ 370
Query: 424 LSEKDYNMQIHKGYCTLIDGNG-RFITKVKMSHNRLFPLRI------QHDQFSCLSSIIP 476
L +K I C + R + M+ NR+F + + ++ CL +I
Sbjct: 371 LQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQ-VIG 429
Query: 477 NDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKI--PSGVCETCQMGKKHRESFPTGKS 534
+ +WH RFGH + GL L+ KE V GLP + VC+ C GK+ RES P +
Sbjct: 430 KANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESA 489
Query: 535 WRAKKLLEIVHSDLCSVEIP-TPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKA 593
W++ ++L++VH+D+C P + G RY + FIDDFSRK W Y L +KSE FK FKA
Sbjct: 490 WKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKA 549
Query: 594 FVEKQSGCPIKALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKNRTIMD 651
VE++SG + LR+DRG EY ++ ++ GI+ QLT YTPQQNGVAERKNR++M+
Sbjct: 550 EVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMN 609
Query: 652 MVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGCI 711
M RCML +P++FW EAV AVYILNR P+K++ + TPEE S +PS+ HLR+FG +
Sbjct: 610 MTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSL 669
Query: 712 AYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWSS 771
AYA VP Q R KLD+K +C+ G SKAY+LY+P T K++ISRDV FDE W W
Sbjct: 670 AYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWED 729
Query: 772 KSQKEPIVTPN-------------------DYEEEDEHVDTTPDEPDE--PETSNREKRN 810
KS +E +V N D EE +E +T + + P R
Sbjct: 730 KSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEETVAETVHQNLPAVGTGGVRQ 789
Query: 811 RRLPARLQDCVLGTDND--PSDEEIINFALF-ADCEPVTFEEASRDENWIKAMDEEINAI 867
R+ P ++D V+G DEE ALF +PV FEEA++ E W KAM+ EI +I
Sbjct: 790 RQQPVWMKDYVVGNARVLITQDEEDEVLALFIGPGDPVCFEEAAQLEVWRKAMEAEITSI 849
Query: 868 EKNKTWELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAP 927
E+N TWEL ELP + K IG+KW++KTK+ GE+D++KARLVAKGY Q+ G+D++EVFAP
Sbjct: 850 EENNTWELVELPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAP 909
Query: 928 VARLDTIRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLK 987
VA+ DTIR+++ L+A+ W + Q+DVKSAFL+G L+E+V+VEQP G+ V + KVY+LK
Sbjct: 910 VAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLK 969
Query: 988 KALYGLKQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGN 1047
KALYGLKQAPRAWY +I+ +F + GF++C EHTL++K + D L+V +YVDDLI+TG+
Sbjct: 970 KALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKK-ERSDFLVVSVYVDDLIYTGS 1028
Query: 1048 NSKMIAEFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSK 1107
+ +MI F+ +M+ F MTDLG M YFLG+EVIQ + GIFI+Q+KYA++I+KK+ ME
Sbjct: 1029 SMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCN 1088
Query: 1108 PISTPVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVS 1167
+ P+ KLT+ G VD T +K LIGSLRYLT TRPD+++ V L+SRYME P
Sbjct: 1089 SVKNPIVPGQKLTKAGAGDAVDPTEFKQLIGSLRYLTTTRPDLIFSVNLVSRYMESPNEQ 1148
Query: 1168 HLQGAKRILRYIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAI 1227
HL KRILRY++GTL GI Y +LVG+ DSD+AGD + RKSTSGY F LG GAI
Sbjct: 1149 HLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAI 1208
Query: 1228 SWSSKKQHVVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALS 1287
+W+SKKQ +V LST EAE+++A+ A Q VWLR +LE + Q T ++CDN S I LS
Sbjct: 1209 AWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLS 1268
Query: 1288 KNPVFHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLG 1347
KNPV HGRSKHI +R+H +REL+ E + ++YC T +Q+ADI TK +K E F +L+ +G
Sbjct: 1269 KNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVFEELRGRMG 1328
Query: 1348 MMK 1350
+ +
Sbjct: 1329 VRR 1331
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 1022 bits (2642), Expect = 0.0
Identities = 560/1368 (40%), Positives = 806/1368 (57%), Gaps = 93/1368 (6%)
Query: 13 PKLNSELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADE-----LARRRDQLALS----- 62
P N E + +W+ M T LK +W +E+G+ + L R RD +
Sbjct: 10 PIFNGE-SYGFWKIKMITILKTRKLWDVIENGVTSNSSPETSPALTRERDDQVMKDMMAL 68
Query: 63 QILQG-IDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSET 121
QILQ + SIF +IA A ++ EAW+ L++ +G + + LQ+LRREYE +M ET
Sbjct: 69 QILQSAVSDSIFPRIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKMEEGET 128
Query: 122 VDQYFTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAEL 181
++ + T++IN+ N++RV+GE+ D +VV+KIL ++P ++D +V + ++ D TLSV EL
Sbjct: 129 INDFTTKLINLSNQLRVHGEEKSDYQVVQKILISVPQQFDSIVGVLEQTKDLSTLSVTEL 188
Query: 182 QGSIESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGR 241
G++++H R+ + +++ E A FN G+ RG
Sbjct: 189 IGTLKAHERRLNLREDRINEGA------------------------FNGEKLGS---RGE 221
Query: 242 GSFRGRGRGNFNQW----RDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCF 297
G N W + NN+N + + S + + G Y + C+
Sbjct: 222 NKQNKIRHGKTNMWCGVCKRNNHNEVDCFRKK-------SESISQRGGSYERR-----CY 269
Query: 298 NCGKYGHKAADCRYKHQANMAENSYQHFGESSQNQHSLFLAS-----NTLSEEENIWYLD 352
C K GH A DC+ + + + E H LF A +T+ EE W +D
Sbjct: 270 VCDKQGHIARDCKLRKGERAHLSIEESEDEKEDECHMLFSAVEEKEISTIGEET--WLVD 327
Query: 353 TGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAP 412
+GC+NHM F +LD + K ++ GN + EGKG I + G + I DV Y P
Sbjct: 328 SGCTNHMSKDVRHFIALDRSKKIIIRIGNGGKVVSEGKGDIRVSTNKGD-HVIKDVLYVP 386
Query: 413 GLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPL---RIQHDQFS 469
L NLLS+ Q+ Y + C + D GR I +KM +R FP+ + + + +
Sbjct: 387 ELARNLLSVSQMISNGYRVIFEDNKCVIQDLKGRKILDIKMK-DRSFPIIWKKSREETYM 445
Query: 470 CLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESF 529
D LWH RFGH ++ + + + V LP ++ G+C C+MGK+ R SF
Sbjct: 446 AFEEKEEQTD-LWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSRRSF 504
Query: 530 PTGKSWRAKKLLEIVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSF 588
P K LE++HSD+C ++ + G RYF+TFIDDFSR WVYFLK KSE + F
Sbjct: 505 PKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKF 564
Query: 589 KTFKAFVEKQSGCPIKALRTDRGQEYLVGTDFF---EQHGIQHQLTTRYTPQQNGVAERK 645
K FK +VE QS IK LRTD G E+L +F ++ GI H++TT Y+PQQNGVAER+
Sbjct: 565 KIFKPYVENQSESRIKRLRTDGGGEFL-SREFIKLCQESGIHHEITTPYSPQQNGVAERR 623
Query: 646 NRTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEK-TPEEAGSGRRPSIRH 704
NRT+++M R M++ K++ +FWAEA+AT+ Y+ NR P+KS+++ TP E SG++PS+ H
Sbjct: 624 NRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDH 683
Query: 705 LRVFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEG 764
L+VFGC+ Y H+PD+ R+KLD K ++ IF+GY + SK Y+++ +K+ +S+DVTFDE
Sbjct: 684 LKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFDEK 743
Query: 765 GMWNWSSKSQKEPIVTPNDYEEEDE--------HVDTTPDEPDEPETSNREKRNRRLPA- 815
W+ K +++ I++ +++ H+D + ++ S+R +N
Sbjct: 744 KTWSHDEKGERKAILSLVKINSQEQGGGNDLNAHIDQVSNAFNQLHISSRGVQNSHEEGE 803
Query: 816 --------RLQDCVLGTDNDPSDEEIIN-FALFADCEPVTFEEASRDENWIKAMDEEINA 866
R + ++ N+ E +I+ L EP EEA +DE WI+AM EE+
Sbjct: 804 ESVGPRGFRSINNLMDQTNEVEGEALIHEMCLMMAEEPQALEEAMKDEKWIEAMREELRM 863
Query: 867 IEKNKTWELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFA 926
IEKNKTWE+ P DK I VKW+++ K SGE + KARLVA+G+ Q+ G+DY E FA
Sbjct: 864 IEKNKTWEVVARPKDKNVISVKWIFRLKTDASGEAIKRKARLVARGFTQEYGVDYLETFA 923
Query: 927 PVARLDTIRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRL 986
PV+R DTIR +++++AQ WK+ QMDVKSAFLNG LEEEVY+EQP G++ +E KV +L
Sbjct: 924 PVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLEEEVYIEQPPGFIEEKEEGKVLKL 983
Query: 987 KKALYGLKQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTG 1046
KALYGLKQAPRAWY +ID YFI+NGF+R + Y+K ++L+V LYVDD+I TG
Sbjct: 984 HKALYGLKQAPRAWYGRIDGYFIKNGFERSINDAAFYVKKTSK-EILVVSLYVDDIIVTG 1042
Query: 1047 NNSKMIAEFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHS 1106
+N K I F+ M + FEMTDLG +SYFLG+EV Q +GIF+SQ+ YA +LKKF M+
Sbjct: 1043 SNVKEIERFKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLKKFGMQEC 1102
Query: 1107 KPISTPVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCV 1166
K +STP+ K+ K D T Y+S+IG + YL A+RPDI+Y LSRYM P
Sbjct: 1103 KSVSTPLTPHGKIEEVLSEKLEDVTMYRSMIGGMLYLCASRPDIMYASSYLSRYMRSPLK 1162
Query: 1167 SHLQGAKRILRYIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGA 1226
HLQ AKR+LRY+KGTLT GI + +LVG++DSDWAG E +KSTSGY F +G+GA
Sbjct: 1163 QHLQEAKRVLRYVKGTLTYGIHFKRVEKPELVGFSDSDWAGSVEDKKSTSGYVFTIGSGA 1222
Query: 1227 ISWSSKKQHVVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIAL 1286
W+S KQ VA STAEAEYI S A Q +WL+R++ + + +I+CDNKSAIA+
Sbjct: 1223 FCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGIRIFCDNKSAIAI 1282
Query: 1287 SKNPVFHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPL 1334
KNPV H R+KHIDI++H +RE ++ +EYCP + QIADI TKPL
Sbjct: 1283 GKNPVQHRRTKHIDIKYHFVREAQQNGKIKLEYCPGELQIADILTKPL 1330
>gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 1017 bits (2630), Expect = 0.0
Identities = 562/1302 (43%), Positives = 778/1302 (59%), Gaps = 138/1302 (10%)
Query: 89 LKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFTRVINIVNKMRVYGEDIQDSKV 148
+K ++G ++ Q ++LQ LRR +E EM ET+ YF+RV+ I N MR GED+ DSKV
Sbjct: 1 MKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKV 60
Query: 149 VEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIESHVNRILEKTEKVKEEALKSQV 208
VEKILRT+ K+ +VV I ES++ L+V LQ S+ H + V+E LK++
Sbjct: 61 VEKILRTLVEKFTYVVCAIEESNNIKELTVDGLQSSLMVHEQNL--SRHDVEERVLKAET 118
Query: 209 NLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGRGRGNFNQWRDNNYNNFNPSHQ 268
+GGRG RG RGRGRG +
Sbjct: 119 QWRP-----------------DGGRG----RGGSPSRGRGRGGY---------------- 141
Query: 269 GKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAADC-RYKHQANMAENSYQHFGE 327
+GRGRGY N++ CF C K GH A+C ++ +AN E
Sbjct: 142 -----------QGRGRGYVNRDTVE--CFKCHKMGHYKAECPSWEKEANYVEM------- 181
Query: 328 SSQNQHSLFLASNTLS---EEENIWYLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSN 384
+ L L ++ EE+ IW+LD+GCSNHMCG +E F LD K V+ G++
Sbjct: 182 ----EEDLLLMAHVEQIGDEEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRR 237
Query: 385 IPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGN 444
+ +EGKG++ + + DG I DV++ PGL +NL S+GQL +K I C +
Sbjct: 238 MAVEGKGKLRLEV-DGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKT 296
Query: 445 G-RFITKVKMSHNRLFPLRI------QHDQFSCLSSIIPNDDWLWHMRFGHFHFSGLNYL 497
R + M+ NR+F + + ++ CL +I + +WH RFGH + GL L
Sbjct: 297 EKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQ-VIGKANNMWHKRFGHLNHQGLRSL 355
Query: 498 SRKEYVSGLPVVKI--PSGVCETCQMGKKHRESFPTGKSWRAKKLLEIVHSDLCSVEIP- 554
+ KE V GLP + VC+ C GK+ RES P +W++ ++L++VH+D+C P
Sbjct: 356 AEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPA 415
Query: 555 TPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKAFVEKQSGCPIKALRTDRGQEY 614
+ G RY + FIDDFSRK W Y L +KSE FK FKA VE++SG + LR+DRG EY
Sbjct: 416 STSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEY 475
Query: 615 LVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKNRTIMDMVRCMLKAKQMPKEFWAEAVA 672
++ ++ GI+ QLT YTPQQNGVAERKNR++M+M RCML +P++FW EAV
Sbjct: 476 NSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQ 535
Query: 673 TAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGCIAYAHVPDQIRKKLDDKGERCI 732
AVYILNR P+K++ + TPEE S +PS+ HLR+FG +AYA VP Q R KLD+K +C+
Sbjct: 536 YAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCV 595
Query: 733 FIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWSSKSQKEPIVTPN---------- 782
G SKAY+LY+P T K++ISRDV FDE W W KS +E +V N
Sbjct: 596 MFGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEG 655
Query: 783 ---------DYEEEDEHVDTTPDEPDE--PETSNREKRNRRLPARLQDCVLGTDND--PS 829
D EE +E +T + + P R R+ P ++D V+G
Sbjct: 656 PEINHNGQQDQEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVLITQ 715
Query: 830 DEEIINFALF-ADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTELPPDKKPIGVK 888
DEE ALF +PV FEEA++ E W KAM+ EI +IE+N TWEL ELP + K IG+K
Sbjct: 716 DEEDEVLALFIGPDDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLK 775
Query: 889 WVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQNNWKI 948
W++KTK+ GE+D++KARLVAKGY Q+ G+D++EVFAPVA+ DTIR+++ L+A+ W +
Sbjct: 776 WIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSV 835
Query: 949 HQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAPRAWYKKIDSYF 1008
Q+DVKSAFL+G L+E+V+VEQP G+ V + KVY+LKKALYGLKQAPRAWY +I+ +F
Sbjct: 836 FQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFF 895
Query: 1009 IQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFRGAMISYFEMTDL 1068
+ GF++C EHTL++K + D L+V +YVDDLI+TG++ +MI F+ +M+ F MTDL
Sbjct: 896 GKEGFEKCYCEHTLFVK-KERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDL 954
Query: 1069 GLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKLKLTRESDGKRV 1128
G M YFLG+EVIQ + GIFI+Q+KYA++I+KK+ ME + P+ KLT+
Sbjct: 955 GKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTK------- 1007
Query: 1129 DSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILRYIKGTLTEGIF 1188
G +SRYME P HL KRILRY++GTL GI
Sbjct: 1008 -------------------------AGAVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQ 1042
Query: 1189 YGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHVVALSTAEAEYIT 1248
Y +LVG+ DSD+AGD + RKSTSGY F LG GAI+W+SKKQ +V LST EAE+++
Sbjct: 1043 YERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVS 1102
Query: 1249 ATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIRFHKIRE 1308
A+ A Q VWLR +LE + Q T ++CDN S I LSKNPV HGRSKHI +R+H +RE
Sbjct: 1103 ASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRE 1162
Query: 1309 LIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGMMK 1350
L+ E + ++YC T +Q+ADI TK +K E F +L+ +G+ +
Sbjct: 1163 LVKEGTIRLDYCTTTDQVADIMTKAVKREVFEELRGRMGVRR 1204
>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301699|pir||F84531 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1347
Score = 986 bits (2550), Expect = 0.0
Identities = 541/1377 (39%), Positives = 801/1377 (57%), Gaps = 100/1377 (7%)
Query: 21 FNYWEFMMTTHLKAHNIWSYVESGLQ------QGADELARRR---------DQLALSQIL 65
+++W M T + +WS VE G+ + E AR + D +AL +
Sbjct: 17 YDFWSIKMATIFRTRKLWSVVEEGVPVEPVQAEETPETARAKTLREEAVTNDTMALQILQ 76
Query: 66 QGIDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQY 125
+ IF +IA A +SKEAWD+LK ++G + + KLQSLRREYE +M ++ + +
Sbjct: 77 TAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYDNDNIKTF 136
Query: 126 FTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSI 185
++I + ++ +GE ++++++KIL ++P K+D +V+ + ++ D D L+++EL G +
Sbjct: 137 TDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDLDALTMSELLGIL 196
Query: 186 ESHVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFR 245
++ R+ + E KE G F R +G
Sbjct: 197 KAQEARVTAREESTKE--------------------------------GAFYVRSKGRES 224
Query: 246 GRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHK 305
G + N N R N + H+ + + + +R+N C+ CGK GH
Sbjct: 225 GFKQDNTNN-RVNQDKKWCGFHKSSKHTEEECREKPKNDDHGKNKRSNIKCYKCGKIGHY 283
Query: 306 AADCRYKHQANMAENSYQHFGESSQNQ-HSLFLASNTLSE--EENIWYLDTGCSNHMCGK 362
A +CR K++ E ++ E N+ H LF AS S E++W +D+GC+NHM +
Sbjct: 284 ANECRSKNK----ERAHVTLEEEDVNEDHMLFSASEEESTTLREDVWLVDSGCTNHMTKE 339
Query: 363 KELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMG 422
+ FS++++++K ++ N + GKG I + + G + I +VF PGL NLLS+
Sbjct: 340 ERYFSNINKSIKVPIRVRNGDIVMTAGKGDITVMTRHG-KRIIKNVFLVPGLEKNLLSVP 398
Query: 423 QLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFSCLSSIIPNDDWLW 482
Q+ Y ++ C + D NG+ I ++M+ ++ F +++ + +++ + ++ W
Sbjct: 399 QIISSGYWVRFQDKRCIIQDANGKEIMNIEMT-DKSFKIKLSSVEEEAMTANVQTEE-TW 456
Query: 483 HMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESFPTGKSWRAKKLLE 542
H R GH L + KE V+GLP K+ C+ C +GK+ R+SFP + ++ LE
Sbjct: 457 HKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTKTREKLE 516
Query: 543 IVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKAFVEKQSGC 601
IVH+D+C ++ + G RY++ F+DD++ WVYFLKQKSE +FK FKA VEKQS C
Sbjct: 517 IVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFATFKKFKALVEKQSNC 576
Query: 602 PIKALRTDRGQEYLVGTDFFEQHGIQHQLTTRYTPQQNGVAERKNRTIMDMVRCMLKAKQ 661
IK LR F E GI Q+T Y+PQQNG AERKNR++++M R ML +
Sbjct: 577 SIKTLRPME--------VFCEDEGINRQVTLPYSPQQNGAAERKNRSLVEMARSMLVEQD 628
Query: 662 MPKEFWAEAVATAVYILNRCPTKSVQEK-TPEEAGSGRRPSIRHLRVFGCIAYAHVPDQI 720
+P + WAEAV T+ Y+ NR P+K++++ TP E G +P++ HLR+FG I Y H+PDQ
Sbjct: 629 LPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNVSHLRIFGSICYVHIPDQK 688
Query: 721 RKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWSSKSQ--KEPI 778
R+KLD K + I IGY + +K Y+++ E +KV +SRDV F E W+W + + K +
Sbjct: 689 RRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSRDVVFQEDKKWDWDKQEEVKKTFV 748
Query: 779 VTPNDYEEE-------------------------DEHVDTTPDEPDEPETSNREKRNRRL 813
++ ND +E HV + ++ +E ETS K+ + +
Sbjct: 749 MSINDIQESRDQQETSSHDLSQIDDHANNGEGETSSHVLSQVNDQEERETSESPKKYKSM 808
Query: 814 PARLQDCVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTW 873
L+ +ND + + I L A+ EP T++EA D+ W +AM+EEI IEKN+TW
Sbjct: 809 KEILEKAP-RMENDEAAQG-IEACLVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTW 866
Query: 874 ELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDT 933
+L + P K I VKW+YK K SG ++KARLVA+G+ Q+ GIDY E FAPV+R DT
Sbjct: 867 KLVDKPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDT 926
Query: 934 IRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGL 993
IR L++ +AQ W+++QMDVKSAFLNG LEEEVYV QP G+V+ GKE+KV RL KALYGL
Sbjct: 927 IRALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGL 986
Query: 994 KQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIA 1053
KQAPRAWY++IDSYFIQNGF R + LY K DVLIV LYVDDLI TGNN+ +I
Sbjct: 987 KQAPRAWYERIDSYFIQNGFARSMNDAALYSK-KKGEDVLIVSLYVDDLIITGNNTHLIN 1045
Query: 1054 EFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPV 1113
F+ M FEMTDLGL++YFLG+EV Q GIF+SQ+KYA+ ++ KF M+ SK +STP+
Sbjct: 1046 TFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPL 1105
Query: 1114 --EEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQG 1171
+ K K D + D T Y+ ++G L YL A+RPD++Y LSRYM P + H Q
Sbjct: 1106 TPQGKRKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQE 1165
Query: 1172 AKRILRYIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSS 1231
AKR+LRY+KGT G+ + + +LVGY+DSDW G E +KST+GY F LG W S
Sbjct: 1166 AKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLEDKKSTTGYVFTLGLAMFCWQS 1225
Query: 1232 KKQHVVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPV 1291
KQ VA STAEAEYI + Q +WL+R+ E + I CDNKSAIA+ +NPV
Sbjct: 1226 CKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNPV 1285
Query: 1292 FHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGM 1348
H R+KHI+I++H +RE + + +EYC ++Q+AD+ TK L + F L++ LG+
Sbjct: 1286 QHRRTKHIEIKYHFVREAEHKGLIQLEYCKGEDQLADVLTKALSVSRFEGLRRKLGV 1342
>gb|AAP51989.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530800|ref|NP_919702.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|21326494|gb|AAM47622.1| Putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20514806|gb|AAM23251.1| Putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1426
Score = 977 bits (2525), Expect = 0.0
Identities = 554/1404 (39%), Positives = 794/1404 (56%), Gaps = 106/1404 (7%)
Query: 17 SELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADELARRRDQLALSQILQGIDYSIFGKI 76
S ++ W +M +L+A +W+ ++ G + R D+ ALS ILQ + + +
Sbjct: 57 SRTNYPDWALLMRVNLQAQGLWTAIDPGYAEF------REDRAALSAILQAVPREMLRGL 110
Query: 77 ANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFTRVINIVNKM 136
A T+K AWD +K GV++ +++K + RR++E ET +++ R+ +V +
Sbjct: 111 AKHDTAKAAWDAIKTMRVGVDRVREAKEKGFRRQFESMRFKERETPEEFAMRLTAVVADI 170
Query: 137 RVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIESHVNRILEKT 196
R G ++D V +K+LR +P KY V ++ + D T+++ EL G + +
Sbjct: 171 RDMGGVMEDEHVNKKLLRVVPKKYKPVAISLEQLLDVKTMALEELVGRLST--------V 222
Query: 197 EKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGRGRGNFNQWR 256
+ ++ S + E + R+ +G GN +GRG
Sbjct: 223 DSYSDDEEGSDGGKLYLTEEQWQARVKQREQEGSGNSGN---------KGRGAPG----- 268
Query: 257 DNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAADCRY----- 311
+H+GK G + G +++ + CFNC ++GH A CR
Sbjct: 269 -------TQNHRGKPGGSPKGKEAATGANS-SRDISRVKCFNCDEFGHYARQCRKPRRQR 320
Query: 312 KHQANMAENSYQH-------------FGESS-------QNQH----SLFLASNTLSEEE- 346
+ +AN+ + + + GE++ Q H + L EEE
Sbjct: 321 RGEANLVQAAEEEPTLLMAHVVGVSLAGEATLGRTPGGQEVHLTEKKVILDHEDGGEEEV 380
Query: 347 -NIWYLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFI 405
W+LDTG +NHM G + F+ LD V TVKFG+ S I I+G+G + R K+ +
Sbjct: 381 TRDWFLDTGATNHMTGVRSAFAELDTGVVGTVKFGDGSVIEIQGRGTVVFRCKNSDHRSL 440
Query: 406 GDVFYAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQH 465
V+Y P L N++S+G+L + Y+ I G CTL D +G + KVK N L+ L++
Sbjct: 441 DTVYYIPKLRKNIISVGRLDARGYDAHIWGGVCTLRDPDGLLLAKVKRDINYLYILKLHI 500
Query: 466 DQFSCLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKH 525
C+++ + W WH RFGH +F L L++ V GLP++ +C+ C GK+
Sbjct: 501 ANPVCMAASGGDMAWRWHARFGHLNFQSLRRLAQGNMVRGLPIIDHTDQLCDGCLAGKQR 560
Query: 526 RESFPTGKSWRAKKLLEIVHSDLCSVEIP-TPGGCRYFITFIDDFSRKAWVYFLKQKSEA 584
R FP +RA++ LE+VH DLC P TPGG +YF+ +DD SR W+ L K EA
Sbjct: 561 RLPFPEEAKFRAQEALELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHEA 620
Query: 585 VDSFKTFKAFVEKQSGCPIKALRTDRGQEY--LVGTDFFEQHGIQHQLTTRYTPQQNGVA 642
+ K F+ VE +SG ++ALRTDRG E+ + D+ HG++ +LT Y+PQQNGV
Sbjct: 621 ATAIKQFQVGVELESGRKLRALRTDRGGEFTSVEFMDYCADHGMRRELTAPYSPQQNGVV 680
Query: 643 ERKNRTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSI 702
ER+N+T++ R MLKA MP FW EAV AVY+LNR PTK++ TP EA GRRPS+
Sbjct: 681 ERRNQTVVAAARSMLKAAGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSV 740
Query: 703 RHLRVFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFD 762
HLRVFGC+ Y +KLDD+G R +FIGY SKAY++Y+P ++V +SRDV FD
Sbjct: 741 EHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVARRVCVSRDVVFD 800
Query: 763 EGGMWNW----SSKSQKEP-----IVTPNDYEEED--EHVDTTPDEPDEPETSNREKRNR 811
E W W + +++E V P D D E T P ++
Sbjct: 801 EAATWAWRDPETEATEEEEFTVDFFVNPVDSVVADLGEQASTPVQGGTYPASTATPPSPP 860
Query: 812 RLPARLQDC------VLGTDNDP-----------SDEEIINF-----ALFADCEPVTFEE 849
+PA ++ C GT+ P + E +++F L A EP++ E
Sbjct: 861 EVPAGVEFCSPPNSVTPGTNEGPIRYRRVQDILSATEPVLDFDYSDQCLLASEEPMSLAE 920
Query: 850 ASRDENWIKAMDEEINAIEKNKTWELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLV 909
A + W +AM EE+ +IE N+TW ELP K IG+KWVYK K PSG + ++KARLV
Sbjct: 921 AEQQLCWRQAMQEELKSIEDNQTWSFAELPVGHKAIGLKWVYKVKKDPSGVVVKHKARLV 980
Query: 910 AKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVE 969
AKGY Q+ GID+ EVFAPVAR++T+R+LI+++A W+IH MDVKSAFLNG LEEEVYV
Sbjct: 981 AKGYVQQQGIDFEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSAFLNGDLEEEVYVV 1040
Query: 970 QPAGYVVRGKEDKVYRLKKALYGLKQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDP 1029
QP G++ +GKE +V RLKKALYGLKQAPRAW K+ + I F + E +Y++
Sbjct: 1041 QPPGFIEKGKEGQVLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESAVYVRGTG- 1099
Query: 1030 GDVLIVCLYVDDLIFTGNNSKMIAEFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFIS 1089
LIV +YVDDLI +G + I F+ M F M+DLGL+SY+LG+EV+Q+ DG+F+S
Sbjct: 1100 SSRLIVGVYVDDLIISGAQASEIDFFKEEMKKKFRMSDLGLLSYYLGMEVVQKDDGVFLS 1159
Query: 1090 QKKYASDILKKFKMEHSKPISTPVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPD 1149
Q YA+ IL+K ME P+E +LKL RES G+ VDST Y+S +GSLRYL TRPD
Sbjct: 1160 QTAYAAKILEKTGMEGCNSTQVPMEARLKLKRESGGEGVDSTMYRSTVGSLRYLVNTRPD 1219
Query: 1150 IVYGVGLLSRYMEDPCVSHLQGAKRILRYIKGTLTEGIFYG--NNSDVKLVGYTDSDWAG 1207
+ Y VG +SR+ME P H K ILRYI GTL G ++G +++L+G++DSD AG
Sbjct: 1220 LAYSVGYVSRFMEKPTSEHWAAVKHILRYIAGTLDVGCWFGRREKGELRLIGFSDSDMAG 1279
Query: 1208 DTETRKSTSGYAFHLGTGAISWSSKKQHVVALSTAEAEYITATSCATQTVWLRRILEVMH 1267
D + RKST+G + LG ISW S+KQ VVALS+ EAEYI AT+ A Q +WL R+L +
Sbjct: 1280 DLDDRKSTTGVLYMLGDSLISWQSQKQKVVALSSCEAEYIAATTGACQGIWLNRLLAELL 1339
Query: 1268 HEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIA 1327
E T + DNKSAI L KNPV H RSKHID RFH IRE + +K++ +EY T++Q+A
Sbjct: 1340 GEDPGQTVMKVDNKSAINLCKNPVLHDRSKHIDTRFHFIRECVEKKQIAVEYVRTEDQLA 1399
Query: 1328 DIFTKPLKIESFYKLKKMLGMMKA 1351
DI TKP+ F +L+K +G+ +A
Sbjct: 1400 DILTKPVGRVRFLELRKKMGLEQA 1423
>gb|AAP51797.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530416|ref|NP_919510.1| putative
copia-type polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18542917|gb|AAL75752.1| Putative
copia-type polyprotein [Oryza sativa]
Length = 1350
Score = 976 bits (2522), Expect = 0.0
Identities = 566/1304 (43%), Positives = 742/1304 (56%), Gaps = 182/1304 (13%)
Query: 20 DFNYWEFMMTTHLKAHNIWSYVESGLQQ-GADELA-----------RRRDQLALSQILQG 67
+++ W M T L + +W VE+G Q+ A E R D AL I QG
Sbjct: 13 NYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMSDAKALFLIQQG 72
Query: 68 IDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFT 127
+ S+F +I AK SKEAWD LK +G +K KLQ+LRR+++ M SE V YF
Sbjct: 73 VAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKESEKVKDYFP 132
Query: 128 RVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIES 187
RVI IVN+MR+YGEDI D KVVEKIL ++P KY+++V I ES D TL++ +L S+ES
Sbjct: 133 RVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAAIEESKDLSTLTIQQLMSSLES 192
Query: 188 HVNRILEKTEKVKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGR 247
H R L++ E A +S+++ N+ RGNF+ + F R
Sbjct: 193 HEERKLQREGSSIENAFQSKLSFRPQ---------------NSRFRGNFQ---KNEFPMR 234
Query: 248 GRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNC-GKYGHKA 306
RG F + N F S Q + G QER G HK
Sbjct: 235 DRGYFQK------NGF--SRQKEDG----------------QERREKELEKLIGLIFHK- 269
Query: 307 ADCRYKHQANMAENSYQHFGESSQNQHSLFLASNTLSEEENIWYLDTGCSNHMCGKKELF 366
+ +++ +F E++++W +D+GC+NHM LF
Sbjct: 270 --------------------KRKKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLF 309
Query: 367 SSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMGQLSE 426
+D + + + GN S EGK
Sbjct: 310 REMDSSYHAKIHMGNGSIAQSEGK------------------------------------ 333
Query: 427 KDYNMQIHKGYCTLIDG-NGRFITKVKMSHNRLFPLRIQHDQFSCLSSIIPNDDWLWHMR 485
D++ C ++D N R + K+ M NR F LR+ H L S I D LWH R
Sbjct: 334 -DFS-------CKILDRKNNRLVAKINMEKNRNFLLRMNHPTQMALRSEIDISD-LWHKR 384
Query: 486 FGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESFPTGKSWRAKKLLEIVH 545
GH ++ L L K V GLP + + S CE C GK+ R SFP +WRA LE+VH
Sbjct: 385 MGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVH 444
Query: 546 SDLCSVEIPT--PGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKAFVEKQSGCPI 603
+D+ ++PT GG YFITFIDD++R WVYFLK+KS A++ FK FKA VE QS I
Sbjct: 445 TDIVG-KVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKI 503
Query: 604 KALRTDRGQEYLVGT--DFFEQHGIQHQLTTRYTPQQNGVAERKNRTIMDMVRCMLKAKQ 661
K LR+D+G EY+ + E GI+ QLT Y+ QQNGVAERKNRTI DM ML+ K
Sbjct: 504 KVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDKG 563
Query: 662 MPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGCIAYAHVPDQIR 721
MPK FWAEAV TA+YILNR PTK+V +TP EA G++P I H+RVFGCI YA VP Q R
Sbjct: 564 MPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKR 623
Query: 722 KKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNWSS-KSQKEPIVT 780
K D+K + CIF+GY K Y+LYN E KK+IISRDV FDE WNW S ++ P++
Sbjct: 624 VKFDNKSDWCIFVGYADGIKGYRLYNLEKKKIIISRDVIFDESATWNWKSPEASSTPLLP 683
Query: 781 PNDYEEEDEHVDTTPDEPD------------------------EPETSNREKRNRRLPAR 816
H+ T D E + S E RR+ +
Sbjct: 684 TTTITLGQPHMHGTHGVEDHTSSPQSSSPMSSSSASSDSSPSSEEQISTPESAPRRVRSM 743
Query: 817 LQDCVLGTDNDPSDEEIINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELT 876
++ +L + + E F ++ EP +F+EA + +NWIKAM++EI+ IEKN TWEL
Sbjct: 744 VE--LLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIEKNNTWELV 801
Query: 877 ELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRM 936
+ P D+K IGVKWVYKTK P G + +YKARLVAKG+KQKPGIDY+E +APVARL+TIR
Sbjct: 802 DRPRDRKVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIRT 861
Query: 937 LISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQA 996
+I+L+AQ WKI+Q+DVKSAFLNG L+EE+YVEQP G+ V+G E+KV+RLKKALYGLKQA
Sbjct: 862 IIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQA 921
Query: 997 PRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFR 1056
PRAWY +ID YFIQ GF + D+LIV LYVDDLI+T N+ KM+ +F+
Sbjct: 922 PRAWYSQIDQYFIQKGFAKS-----------ISTDILIVSLYVDDLIYTANSEKMMQDFK 970
Query: 1057 GAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEK 1116
M+ +EM+DLGL+ YFLG+EV Q +GIFISQ+KYA +ILKKFKM++ K ++TP+
Sbjct: 971 KDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNYKSVTTPLLPN 1030
Query: 1117 LKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRIL 1176
K + D T Y+SL+GSL YLTATRPDI++ LLSRYM P + AKR+L
Sbjct: 1031 EKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRVL 1090
Query: 1177 RYIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHV 1236
RYIKGT GI+Y + KL+GYTDSDWAG + KSTSGYAF LG
Sbjct: 1091 RYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLG------------- 1137
Query: 1237 VALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDN 1280
+AEAEY+ A+ +Q VWLRRI+E + +Q PT IYCD+
Sbjct: 1138 ----SAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDD 1177
>ref|NP_912850.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1330
Score = 943 bits (2438), Expect = 0.0
Identities = 541/1393 (38%), Positives = 775/1393 (54%), Gaps = 135/1393 (9%)
Query: 28 MTTHLKAHNIWSYVESGLQQGADELARRRDQLALSQILQGIDYSIFGKIANAKTSKEAWD 87
M +L+A +W+ ++ G + R D ALS ILQ + + +A T+K AWD
Sbjct: 1 MRVNLQAQGLWTAIDPGYAEF------REDWAALSAILQAVPREMLRGLAKHDTAKAAWD 54
Query: 88 ILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFTRVINIVNKMRVYGEDIQDSK 147
+K GV++ +++K Q RR++E ET +++ R+ +V +R G ++D
Sbjct: 55 AIKTMRVGVDRVREAKEQGFRRQFESMRFKERETPEEFAMRLTAVVADIRDMGGVMEDEH 114
Query: 148 VVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIESHVNRILEKTEKVKEEALKSQ 207
V +K+LR +P KY V ++ + D T+++ EL G + + + ++ S
Sbjct: 115 VNKKLLRVVPKKYKPVAISLEQLLDVKTMALEELVGRLST--------VDSYSDDEEGSD 166
Query: 208 VNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGRGRGNFNQWRDNNYNNFNPSH 267
+ E + R+ +G GN +GRG +H
Sbjct: 167 GGKLYLTEEQWQARVKQREQEGSGNSGN---------KGRGAPG------------TQNH 205
Query: 268 QGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAADCRY-----KHQANMAENSY 322
+GK G + G +++ + CFNC ++GH A CR + +AN+ + +
Sbjct: 206 RGKPGGSPKGKEAATGANS-SRDISRVKCFNCDEFGHYARQCRKPRRQRRGEANLVQAAE 264
Query: 323 QH-------------FGESS-------QNQH----SLFLASNTLSEEE--NIWYLDTGCS 356
+ GE++ Q H + L EEE W+LDTG +
Sbjct: 265 EEPTLLMAHVVGVSLAGEATLGRTPGGQEVHLTEKKVILDHEDGGEEEVTRDWFLDTGAT 324
Query: 357 NHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPGLHH 416
NHM G + F+ LD V TVKFG+ S I I+G+G + R K+G + V+Y P L
Sbjct: 325 NHMTGVRSAFAELDTGVVGTVKFGDGSVIEIQGRGTVVFRCKNGDHRSLDTVYYIPKLRK 384
Query: 417 NLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFSCLSSIIP 476
N++S+G+L + Y+ I G CTL D +G + KVK N L+ L++ C+++
Sbjct: 385 NIISVGRLDARGYDAHIWGGVCTLRDPDGLLLAKVKRDINYLYILKLHIANPVCMAASGG 444
Query: 477 NDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCETCQMGKKHRESFPTGKSWR 536
+ W WH RFGH +F L L++ V GLP++ +C+ C GK+ R FP +R
Sbjct: 445 DTAWRWHARFGHLNFQSLRRLAQGNMVRGLPIIDHTDQLCDGCLAGKQRRLPFPEEAKFR 504
Query: 537 AKKLLEIVHSDLCSVEIP-TPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFKTFKAFV 595
A++ LE+VH DLC P TPGG +YF+ +DD SR W+ L K EA + K F+ V
Sbjct: 505 AQEALELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQVGV 564
Query: 596 EKQSGCPIKALRTDRGQEY--LVGTDFFEQHGIQHQLTTRYTPQQNGVAERKNRTIMDMV 653
E +SG ++ALRTDRG E+ + D+ HG++ +LT Y+PQQNGV ER+N+T++
Sbjct: 565 ELESGRKLRALRTDRGGEFTSVEFMDYCADHGMRRELTAPYSPQQNGVVERRNQTVVAAA 624
Query: 654 RCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRVFGCIAY 713
R MLKA MP FW EAV AVY+LNR PTK++ TP EA GRRPS+ HLRVFGC+ Y
Sbjct: 625 RSMLKAAGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGY 684
Query: 714 AHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMWNW---- 769
+KLDD+G R +FIGY SKAY++Y+P ++V +SRDV FDE W W
Sbjct: 685 VKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVVRRVCVSRDVVFDEAATWAWRDPE 744
Query: 770 SSKSQKEP-----IVTPNDYEEED--EHVDTTPDEPDEPETSNREKRNRRLPARLQDC-- 820
+ +++E V P D D E T P ++ +PA ++ C
Sbjct: 745 TEATEEEEFTVDFFVNPVDSVVADLGEQASTPVQGGTYPASTATPPSPPEVPAGVEFCSP 804
Query: 821 ----VLGTDNDP-----------SDEEIINF-----ALFADCEPVTFEEASRDENWIKAM 860
GT+ P + E +++F L A EP++ EA + W +AM
Sbjct: 805 PNSVTPGTNEGPIRYRRVQDILSATEPVLDFDYSDQCLLASEEPMSLAEAEQQLCWRQAM 864
Query: 861 DEEINAIEKNKTWELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGID 920
EE+ +IE N+TW ELP K IG+KWVYK K PSG + ++KARLVAKGY Q+ GID
Sbjct: 865 QEELKSIEDNQTWSFAELPVGHKAIGLKWVYKVKKDPSGVVVKHKARLVAKGYVQQQGID 924
Query: 921 YFEVFAPVARLDTIRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKE 980
+ EVFAPVAR++T+R+LI+++A W+IH MDVKSAFLNG LEEEVYV QP G++ +GKE
Sbjct: 925 FEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSAFLNGDLEEEVYVVQPPGFIEKGKE 984
Query: 981 DKVYRLKKALYGLKQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVD 1040
+V RLKKALYGLKQAPRAW K+ + I F + E +Y++
Sbjct: 985 GQVLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESAVYVR--------------- 1029
Query: 1041 DLIFTGNNSKMIAEFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKK 1100
TG++ ++ DLGL+SY+LG+EV+Q+ DG+F+SQ YA+ IL+K
Sbjct: 1030 ---GTGSSRLIVG------------VDLGLLSYYLGMEVVQKDDGVFLSQTAYAAKILEK 1074
Query: 1101 FKMEHSKPISTPVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRY 1160
ME P+E +LKL RES G+ VDST Y+S +GSLRYL TRPD+ Y VG +SR+
Sbjct: 1075 TGMEGCNSTQVPMEARLKLKRESGGEGVDSTMYRSTVGSLRYLVNTRPDLAYSVGYVSRF 1134
Query: 1161 MEDPCVSHLQGAKRILRYIKGTLTEGIFYG--NNSDVKLVGYTDSDWAGDTETRKSTSGY 1218
ME P H K ILRYI GTL G ++G +++L+G++DSD AGD + RKST+G
Sbjct: 1135 MEKPTSEHWAAVKHILRYIAGTLDVGCWFGRREKGELRLIGFSDSDMAGDLDDRKSTTGV 1194
Query: 1219 AFHLGTGAISWSSKKQHVVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYC 1278
+ LG ISW S+KQ VVALS+ EAEYI AT+ A Q +WL R+L + E T +
Sbjct: 1195 LYMLGDSLISWQSQKQKVVALSSCEAEYIAATTGACQGIWLNRLLAELLGEDPGQTVMKV 1254
Query: 1279 DNKSAIALSKNPVFHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIES 1338
DNKSAI L KNPV H RSKHID RFH IRE + +K++ +EY T++Q+ADI TKP+
Sbjct: 1255 DNKSAINLCKNPVLHDRSKHIDTRFHFIRECVEKKQIAVEYVRTEDQLADILTKPVGRVR 1314
Query: 1339 FYKLKKMLGMMKA 1351
F +L+K +G+ +A
Sbjct: 1315 FLELRKKMGLEQA 1327
>ref|XP_474787.1| OSJNBb0026E15.10 [Oryza sativa (japonica cultivar-group)]
gi|38344222|emb|CAE03692.2| OSJNBb0026E15.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 936 bits (2420), Expect = 0.0
Identities = 540/1419 (38%), Positives = 784/1419 (55%), Gaps = 124/1419 (8%)
Query: 20 DFNYWEFMMTTHLKAHNIWSYVESGLQQGADELARRRDQLALSQILQGIDYSIFGKIANA 79
++ W +M +++A +W VE +G D + R+DQ AL+ IL+ + + +A
Sbjct: 56 NYQDWALVMRVNMQAQCLWGAVEP---EGDDLVDYRQDQQALAAILRAVPAEMLATLAVK 112
Query: 80 KTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFTRVINIVNKMRVY 139
+T++EAW+ +K GV++ +++ Q LRRE+ ETVD + R+ + N +R
Sbjct: 113 ETAQEAWEAIKTRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSMRIGGLANNLRTL 172
Query: 140 GEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIESHVNRILEKTEKV 199
G++I +++VV+K+L+ +P + +I D + LS+ E+ G + S +E+ ++
Sbjct: 173 GDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRS-----VEQRKQC 227
Query: 200 KEEALKSQVNLNN---VAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGRGRGNFNQWR 256
K A S+V+ N E + + R + + + G G RGRGRG +
Sbjct: 228 KTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSS---SGNGDRRGRGRGKKD--- 281
Query: 257 DNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAADCRYKHQAN 316
D P GG N G+ C NCGK GH A DCR K +A
Sbjct: 282 DGAPKEAQPKPANPGGRNPGN------------------CKNCGKRGHWAKDCRSKPKAQ 323
Query: 317 MAENSYQH--------------------------------------FGESSQNQHSLFLA 338
A + + GE + + +F
Sbjct: 324 QAYVAQEEDEEPALLLAKVQLDPPRPRVAAPTNVVSPPSAPRAPSPIGELAVVEAKVFAQ 383
Query: 339 SNTLSEEEN-IWYLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRL 397
+ E + +W LDTG +NHM G + F+ LD V TV+FG+ S + IEG+ +
Sbjct: 384 LDDGGEHDPAMWILDTGATNHMTGSRSAFAELDTAVTGTVRFGDGSVVRIEGRVTVLFSC 443
Query: 398 KDGSQNFIGDVFYAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNR 457
+ G I V+Y P L N++S+GQL + IH G + D G + +V+ S +
Sbjct: 444 RFGEHRGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGILHVWDPRGHLLVRVRRSDDC 503
Query: 458 LFPLRIQHDQFSCLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSGVCE 517
L+ +++ D+ CL++ W WH R+GH +F L L+++E V GLP+++ + VC+
Sbjct: 504 LYTIKLDIDRPVCLAARSAEPAWRWHARYGHLNFPALRKLAQQEMVRGLPLLQQVTQVCD 563
Query: 518 TCQMGKKHRESFPTGKSWRAKKLLEIVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVY 576
C +GK+ R +FPT +RA + LE+VH DLC +E TP G RYF+ +DD SR W+
Sbjct: 564 GCLLGKQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWLT 623
Query: 577 FLKQKSEAVDSFKTFKAFVEKQSGCPIKALRTDRGQEY--LVGTDFFEQHGIQHQLTTRY 634
++ K EA ++ K F+A E +SG ++ALR DRG E+ + ++ G+ QLT Y
Sbjct: 624 MIRSKDEAANAIKHFQARAEVESGRKLRALRMDRGSEFTSIEFGEYCANLGVGRQLTAPY 683
Query: 635 TPQQNGVAERKNRTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEA 694
+PQQNGV ER+N+TI+ R M+KAK +P FW EA++TAV++LNR PTKS+ +TP EA
Sbjct: 684 SPQQNGVVERRNQTIVATARSMMKAKGVPGRFWGEAMSTAVFLLNRSPTKSLDNQTPYEA 743
Query: 695 GSGRRPSIRHLRVFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVI 754
G+ P++ LR FGC+ + + KKLDD+ + +GY SKAY+LY+P +++V
Sbjct: 744 WYGQWPAVHFLRTFGCVGHVKITKPGLKKLDDRSAPMVLLGYEQGSKAYRLYDPVSERVH 803
Query: 755 ISRDVTFDEGGMWNWSSKS-----QKEPIV-----------------TPNDYEEEDEHVD 792
+SRDV FDE W+W + Q EP TP
Sbjct: 804 VSRDVVFDEDIAWDWGPVTPDGAPQLEPFTVEQVVTTTIGTAPASSPTPPSPPSPAPSAP 863
Query: 793 TTPDEPDEPETSNRE-----KRNRRLPA----------RLQDCVLGTDNDPSD-----EE 832
TTP P P E ++ L A RL D +LG + P E+
Sbjct: 864 TTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVVPRYRLVDNLLGNASPPGHAPRVLEQ 923
Query: 833 IINFALFADCEPVTFEEASRDENWIKAMDEEINAIEKNKTWELTELPPDKKPIGVKWVYK 892
+ + AD EP + EA D +W AM +E+NAI N TW LT+LP + IG+KWVYK
Sbjct: 924 LELHVVSAD-EPASLAEAEADPSWRGAMQDELNAIVDNDTWSLTDLPHGHRAIGLKWVYK 982
Query: 893 TKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIRMLISLSAQNNWKIHQMD 952
K G I RYKARLVAKGY Q+ G+D+ EVFA VARL+++R+L++++A W++H MD
Sbjct: 983 LKRDEQGAIVRYKARLVAKGYVQRQGVDFDEVFALVARLESVRLLLAVAAHQGWQVHHMD 1042
Query: 953 VKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQAPRAWYKKIDSYFIQNG 1012
VKSAFLNG L EEVYV QP G+V ++KVYRL KALYGL+QAPRAW K+DS + G
Sbjct: 1043 VKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLHKALYGLRQAPRAWNAKLDSSLLSLG 1102
Query: 1013 FQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEFRGAMISYFEMTDLGLMS 1072
F R EH +Y + G L+V +YVDDLI TG++ I F+G M+ F+M+DLG +
Sbjct: 1103 FHRSSSEHGVYTR-TRGGRRLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALR 1161
Query: 1073 YFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEEKLKLTRESDGKRVDSTH 1132
Y+LGIEV Q DGI + Q YA IL+K ++ P TP+E +LKL + SD VD+T
Sbjct: 1162 YYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDATL 1221
Query: 1133 YKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRILRYIKGTLTEGIFYGNN 1192
Y+SL+GSLRYL TRPD+ + VG +SR+ME P HL +RILRY+ GT GI +G
Sbjct: 1222 YRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPG 1281
Query: 1193 SDV---KLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQHVVALSTAEAEYITA 1249
+ LVGY+DSD AGD + RKSTSG F + G ++W S KQ VVALS+ EAEYI A
Sbjct: 1282 ARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAA 1341
Query: 1250 TSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIRFHKIREL 1309
+ Q VWL R+L + ++ T + DN+S I+L KNPV H RSKHID+++H IRE
Sbjct: 1342 AAATCQGVWLARLLAEVLGDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIREC 1401
Query: 1310 IAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGM 1348
+K + + + T EQ+ DIFTK L F +L+ +G+
Sbjct: 1402 AEKKLIEMMFVGTAEQLGDIFTKSLGRTRFQELRSKIGV 1440
>emb|CAD41367.2| OSJNBa0088A01.6 [Oryza sativa (japonica cultivar-group)]
gi|50928241|ref|XP_473648.1| OSJNBa0088A01.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1403
Score = 932 bits (2408), Expect = 0.0
Identities = 531/1388 (38%), Positives = 785/1388 (56%), Gaps = 103/1388 (7%)
Query: 15 LNSELDFNYWEFMMTTHLKAHNIWSYVESGLQQGADELARRRDQLALSQILQGIDYSIFG 74
L ++ ++ W MM L+A +W VE G AD A D++A+ IL+ + +
Sbjct: 56 LLTKTNYGDWALMMKVMLQARGLWDAVEHG---DADFQA---DRMAMEAILRAMPPEMLA 109
Query: 75 KIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRREYERYEMSSSETVDQYFTRVINIVN 134
+A ++KEAWD +K GV++ +KSK Q L+++Y+ E ETV+++ R+ +V
Sbjct: 110 SLAVKPSAKEAWDAIKTMRVGVDRVRKSKAQMLQKQYDAMEFKDGETVEEFSLRLNGLVT 169
Query: 135 KMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILESHDTDTLSVAELQGSIESHVNRILE 194
+ G +++ KVVEK L ++P + +I D D L++ E+ G + + ++
Sbjct: 170 NLATLGVHLEEGKVVEKFLNSVPDHLSQIALSIETLLDLDELTLEEVTGRLRNAEEKLPA 229
Query: 195 KTEK------VKEEALKSQVNLNNVAESSQMGEARARDNFNNGGRGNFRGRGRGSFRGRG 248
K+ + EE ++ AESS G+A++ G GN R RG G+
Sbjct: 230 KSSAAGGKLFLTEEQWTARWKEKQAAESSS-GKAKS-------GGGNRRRRG-----GKK 276
Query: 249 RGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGCFNCGKYGHKAAD 308
+ +H G R E + C NCG+ GH A D
Sbjct: 277 KAEA------------AAHDGDRAGRDTQEGR---------EPNRDKCRNCGRTGHWAKD 315
Query: 309 CRYKHQANMAENSYQHFGESSQNQHSLFLA------------------------------ 338
CR Q +YQ + ++ +L +A
Sbjct: 316 CR---QPKRPAEAYQALADEDDDEPALLMAHVVDAAPVSASSSSAPPASSPPSQPDKTIE 372
Query: 339 -------SNTLSEEEN---IWYLDTGCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIE 388
++ L+E++ +W+LDTG +NHM G +E+F+ LD +V+ +V+FG+ S + IE
Sbjct: 373 LVEPKVFAHLLTEKQTDGGVWHLDTGATNHMTGIREVFAELDLSVRGSVRFGDGSVVGIE 432
Query: 389 GKGQIAIRLKDGSQNFIGDVFYAPGLHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFI 448
G+G+I ++ + V+Y P L+ NL+S+GQL E +++I+ G CT+ D + +
Sbjct: 433 GRGKIIFECRNQEHRALTGVYYIPKLNANLISLGQLDENGCDVRIYHGVCTIRDPAAQLL 492
Query: 449 TKVKMSHNRLFPLRIQHDQFSCLSSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPV 508
+V+ + NRL+ +++ Q CL++ WLWH R+GH HF L L+ ++ V G+P
Sbjct: 493 ARVQRTRNRLYLIKLTIGQPVCLAAKAQECAWLWHARYGHLHFDALRRLASRDMVRGMPD 552
Query: 509 VKIPSGVCETCQMGKKHRESFPTGKSWRAKKLLEIVHSDLCSVEIP-TPGGCRYFITFID 567
+ +C++C + K+ R FP +RA+ LE+VH DLC P TPGG +F+ +D
Sbjct: 553 IDHVEQLCDSCVISKQRRTPFPRRSMFRAEDRLELVHGDLCGPISPATPGGKTHFL-LLD 611
Query: 568 DFSRKAWVYFLKQKSEAVDSFKTFKAFVEKQSGCPIKALRTDRGQEY--LVGTDFFEQHG 625
D SR W+ L KSEA D+ K F+A E +S ++ LRTD G E+ + + + G
Sbjct: 612 DASRYMWITLLGCKSEAADAIKRFQARAEAESKQKLRILRTDNGGEFTSVEFATYCAEQG 671
Query: 626 IQHQLTTRYTPQQNGVAERKNRTIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKS 685
+ + Y+PQQNGV ER+N+TI+ M R +LKAK MP +W EAV TAV++LNR PTKS
Sbjct: 672 VSRHFSAPYSPQQNGVVERRNQTILGMARSLLKAKNMPARYWGEAVTTAVFLLNRAPTKS 731
Query: 686 VQEKTPEEAGSGRRPSIRHLRVFGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKL 745
+ TP EA G++P++ +LR FGC+AY KL D+ + + IGY +KAYK+
Sbjct: 732 LANMTPYEAWHGKKPAVGYLRTFGCLAYVKDVRPHLPKLSDRSKPMVLIGYADGAKAYKV 791
Query: 746 YNPETKKVIISRDVTFDEGGMWNWSSKSQKEPIVTPNDYEEEDEHVDTTPDEPDEPETSN 805
++P + +V +SRDV FDEG W+W + + E++ T P S
Sbjct: 792 FDPVSGRVQVSRDVIFDEGAGWDWDAAGAAAVPGGGGCSDFTVEYLTTGTS----PSAST 847
Query: 806 REKRNRRLPARLQDCVLGTDNDPS----DEEIINFALFADCEPVTFEEASRDENWIKAMD 861
+ A +LG P D E L A EP +F EA + + W +AM
Sbjct: 848 SAPSSASSGASAMGDLLGDALTPGFATRDPEEGELHLLAAEEPASFTEAEQRQEWRRAML 907
Query: 862 EEINAIEKNKTWELTELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDY 921
+EI +IE+N TW L +LP + IG+KWV+K K G + ++KARL+AKGY Q+PGID+
Sbjct: 908 DEIASIEENNTWRLVDLPSGHRAIGLKWVFKLKKDAEGRVAKHKARLIAKGYVQQPGIDF 967
Query: 922 FEVFAPVARLDTIRMLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKED 981
EVF PVARL+++R+L++ +AQ W +H MDVKSAFLNG L EEVYV+QP G+V G+E
Sbjct: 968 EEVFTPVARLESVRLLLAQAAQAGWTVHHMDVKSAFLNGELAEEVYVKQPPGFVKEGREH 1027
Query: 982 KVYRLKKALYGLKQAPRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDD 1041
+V RL KALYGL+QAPRAW K+++ + GF+R EH +Y++ + L+V +YVDD
Sbjct: 1028 QVLRLDKALYGLRQAPRAWNSKLEATLLSLGFRRNDCEHAVYVRG-NTSARLLVGVYVDD 1086
Query: 1042 LIFTGNNSKMIAEFRGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKF 1101
LI TG I F+G M + F+M+DLGL+S++LGIEV Q I +SQ YA IL++
Sbjct: 1087 LIITGTKEDEIVRFKGEMKALFKMSDLGLLSFYLGIEVEQVAGSIRLSQAAYARRILERA 1146
Query: 1102 KMEHSKPISTPVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYM 1161
M P +TP+E++LKL++ S V+ T Y+ ++G LRYL TRPDI + VG +SR+M
Sbjct: 1147 GMLGCNPSATPMEQRLKLSKTSAAASVNPTWYRGIVGCLRYLVHTRPDIAFSVGYVSRFM 1206
Query: 1162 EDPCVSHLQGAKRILRYIKGTLTEGIFY-GNNSDVKLVGYTDSDWAGDTETRKSTSGYAF 1220
E P H KRILRYI GT G Y ++S V+LVGY+D+D AGD +TRKST+G F
Sbjct: 1207 EAPTTEHEAAVKRILRYIAGTTEFGCHYHQSSSPVQLVGYSDADMAGDPDTRKSTTGVVF 1266
Query: 1221 HLGTGAISWSSKKQHVVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDN 1280
LGT +SW S KQ VVALS+ EAEYI AT+ A Q VWL ++L ++ E+ K+ DN
Sbjct: 1267 FLGTSPVSWQSVKQKVVALSSCEAEYIAATTAACQGVWLSQLLGEINQEEPDAFKLLIDN 1326
Query: 1281 KSAIALSKNPVFHGRSKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFY 1340
KSAIALSKNPVFH RSKHI R+H IRE + + V +E+ T+ QIADI TK L F
Sbjct: 1327 KSAIALSKNPVFHERSKHIATRYHYIRERVEDGSVHVEFVGTEGQIADILTKALGRTRFQ 1386
Query: 1341 KLKKMLGM 1348
+L+ +G+
Sbjct: 1387 ELRSRIGV 1394
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 798 bits (2061), Expect = 0.0
Identities = 460/1193 (38%), Positives = 681/1193 (56%), Gaps = 41/1193 (3%)
Query: 178 VAELQGSIESHVNRILEKTEKVKEEALKSQVN-LNNVAESSQMGEARARDNFNNGGRGNF 236
+A+L+ E+H I E LK +V LN+ E+ +
Sbjct: 395 IADLEAEKEAHKEEISE---------LKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLL 445
Query: 237 RGRGRGSFRGRGRGNFNQWRDNNYNNFNPSHQGKGGNNFGSNNRGRGRGYYNQERTNNGC 296
G+ G+ RG G + R F P+ G +R G +R C
Sbjct: 446 LGKNAGNQRGLGFNPKSAGR-TTMTEFVPAKNRTGATMSQHRSRHHGMQQKKSKRKKWRC 504
Query: 297 FNCGKYGHKAADCRYKHQANMAENSYQHFGESSQNQH---SLFLASNTLSEEENIWYLDT 353
CGKYGH C + H + ++S +H SL + ++ + + WYLD+
Sbjct: 505 HYCGKYGHIKPFCYHLHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDS 564
Query: 354 GCSNHMCGKKELFSSLDETVKSTVKFGNNSNIPIEGKGQIAIRLKDGSQNFIGDVFYAPG 413
GCS HM G KE +++ S V FG+ S I G G++ + DG + + V G
Sbjct: 565 GCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKL---VHDGLPS-LNKVLLVKG 620
Query: 414 LHHNLLSMGQLSEKDYNMQIHKGYCTLIDGNGRFITKVKMSHNRLFPLRIQHDQFS--CL 471
L NL+S+ QL ++ +N+ K C + + + K S + + Q +S CL
Sbjct: 621 LTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCL 680
Query: 472 SSIIPNDDWLWHMRFGHFHFSGLNYLSRKEYVSGLPVVKIPSG-VCETCQMGKKHRESFP 530
SS ++ +WH RFGH H G+ + K V G+P +KI G +C CQ+GK+ + S
Sbjct: 681 SSK-EDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQ 739
Query: 531 TGKSWRAKKLLEIVHSDLCS-VEIPTPGGCRYFITFIDDFSRKAWVYFLKQKSEAVDSFK 589
+ ++LE++H DL +++ + GG RY +DDFSR WV F+++KSE + FK
Sbjct: 740 KLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVKFIREKSETFEVFK 799
Query: 590 TFKAFVEKQSGCPIKALRTDRGQEYLVG--TDFFEQHGIQHQLTTRYTPQQNGVAERKNR 647
++++ C IK +R+D G+E+ T+F GI H+ + TPQQNG+ ERKNR
Sbjct: 800 ELSLRLQREKDCVIKRIRSDHGREFENSRLTEFCTSEGITHEFSAAITPQQNGIVERKNR 859
Query: 648 TIMDMVRCMLKAKQMPKEFWAEAVATAVYILNRCPTKSVQEKTPEEAGSGRRPSIRHLRV 707
T+ + R ML AK++P WAEA+ TA YI NR + T E GR+PS++H +
Sbjct: 860 TLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHI 919
Query: 708 FGCIAYAHVPDQIRKKLDDKGERCIFIGYCSNSKAYKLYNPETKKVIISRDVTFDEGGMW 767
FG Y + R+K+D K + IF+GY +NS+AY+++N T+ V+ S +V D+ +
Sbjct: 920 FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDD--LS 977
Query: 768 NWSSKSQKEPIVTPNDY----EEEDEHVDTTPDEPDEPETSNREKRNRRLPARL--QDCV 821
K +E + T D + E+ + + DE + +KR+ ++ ++ +
Sbjct: 978 PARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELI 1037
Query: 822 LGTDND-----PSDEEIINFALFAD-CEPVTFEEASRDENWIKAMDEEINAIEKNKTWEL 875
+G N + EI++ + F EP +EA DE WI AM EE+ ++N+ WEL
Sbjct: 1038 IGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWEL 1097
Query: 876 TELPPDKKPIGVKWVYKTKYKPSGEIDRYKARLVAKGYKQKPGIDYFEVFAPVARLDTIR 935
P IG KW++K K G I R KARLVA+GY Q G+D+ E FAPVARL++IR
Sbjct: 1098 VPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIR 1157
Query: 936 MLISLSAQNNWKIHQMDVKSAFLNGTLEEEVYVEQPAGYVVRGKEDKVYRLKKALYGLKQ 995
+L+ ++ +K++QMDVKSAFLNG L EEVYVEQP G+ D VYRLKKALYGLKQ
Sbjct: 1158 LLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQ 1217
Query: 996 APRAWYKKIDSYFIQNGFQRCPFEHTLYIKFIDPGDVLIVCLYVDDLIFTGNNSKMIAEF 1055
APRAWY+++ + Q G+++ + TL++K D +++I +YVDD++F G +++M+ F
Sbjct: 1218 APRAWYERLTEFLTQQGYRKGGIDKTLFVKQ-DAENLMIAQIYVDDIVFGGMSNEMLRHF 1276
Query: 1056 RGAMISYFEMTDLGLMSYFLGIEVIQQKDGIFISQKKYASDILKKFKMEHSKPISTPVEE 1115
M S FEM+ +G ++YFLG++V Q +D IF+SQ +YA +I+KKF ME++ TP
Sbjct: 1277 VQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPT 1336
Query: 1116 KLKLTRESDGKRVDSTHYKSLIGSLRYLTATRPDIVYGVGLLSRYMEDPCVSHLQGAKRI 1175
LKL+++ G VD + Y+S+IGSL YLTA+RPDI Y VG+ +RY +P +SHL KRI
Sbjct: 1337 HLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRI 1396
Query: 1176 LRYIKGTLTEGIFYGNNSDVKLVGYTDSDWAGDTETRKSTSGYAFHLGTGAISWSSKKQH 1235
L+Y+ GT GI Y + S+ LVGY D+DWAG + RKSTSG F+LG ISW SKKQ+
Sbjct: 1397 LKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQN 1456
Query: 1236 VVALSTAEAEYITATSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGR 1295
V+LSTAEAEYI A S +Q VW++++L+ + EQ+ T +YCDN SAI +SKNPV H R
Sbjct: 1457 CVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMT-LYCDNMSAINISKNPVQHSR 1515
Query: 1296 SKHIDIRFHKIRELIAEKEVVIEYCPTKEQIADIFTKPLKIESFYKLKKMLGM 1348
+KHIDIR H IR+L+ +K + +++ T+EQIADIFTK L F KL+ LG+
Sbjct: 1516 TKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 1568
Score = 103 bits (257), Expect = 4e-20
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 23/209 (11%)
Query: 13 PKLNSELDFNYWEFMMTTHLKA--HNIWSYVESGLQ---------QGADEL------ARR 55
P + ++ YW+ M LK+ W V G + + DEL +
Sbjct: 13 PPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKE 72
Query: 56 RDQLALSQ------ILQGIDYSIFGKIANAKTSKEAWDILKLSHKGVEKAQKSKLQSLRR 109
D+LAL + G+D +IF I +K+AW+ILK++H+G K + S+LQ L
Sbjct: 73 EDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLAT 132
Query: 110 EYERYEMSSSETVDQYFTRVINIVNKMRVYGEDIQDSKVVEKILRTMPMKYDHVVTTILE 169
++E +M E + + ++ I N GE I D K+V KILR++P ++D VT I E
Sbjct: 133 KFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEE 192
Query: 170 SHDTDTLSVAELQGSIESHVNRILEKTEK 198
+ D + V EL GS+++ + ++ EK
Sbjct: 193 AQDICNMRVDELIGSLQTFELGLSDRAEK 221
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,419,571,256
Number of Sequences: 2540612
Number of extensions: 110577323
Number of successful extensions: 505801
Number of sequences better than 10.0: 4704
Number of HSP's better than 10.0 without gapping: 2527
Number of HSP's successfully gapped in prelim test: 2353
Number of HSP's that attempted gapping in prelim test: 401372
Number of HSP's gapped (non-prelim): 26633
length of query: 1351
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1211
effective length of database: 507,674,714
effective search space: 614794078654
effective search space used: 614794078654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Medicago: description of AC148918.3