BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148819.5 - phase: 0
(83 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultiva... 50 1e-05
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 46 3e-04
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 45 6e-04
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 42 0.005
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 42 0.005
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 41 0.009
ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cu... 40 0.015
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 40 0.015
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa (japonica cultivar... 40 0.020
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 40 0.020
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 39 0.026
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 38 0.057
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 37 0.17
emb|CAB79135.1| putative transposable element [Arabidopsis thali... 36 0.22
dbj|BAA74713.1| copia-like retrotransposable element [Bombyx mori] 36 0.28
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 35 0.37
emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana] ... 35 0.49
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 33 1.8
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 32 3.1
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 32 3.1
>emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultivar-group)]
Length = 432
Score = 50.1 bits (118), Expect = 1e-05
Identities = 26/80 (32%), Positives = 49/80 (60%), Gaps = 2/80 (2%)
Query: 4 KWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFV 63
K+D+ KF G +FGLW+ +++ +L QQ+ +KA KG + M +D +M A +
Sbjct: 43 KFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKG--VKPAKMEDDDCEEMQLQAAATIR 100
Query: 64 LCLRDKVLREVVKDTTIKVM 83
CL D+++ V+++T+ K++
Sbjct: 101 RCLSDQIMYHVMEETSPKII 120
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains:
Protease ; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 45.8 bits (107), Expect = 3e-04
Identities = 25/80 (31%), Positives = 40/80 (49%)
Query: 2 GTKWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSF 61
G K+++ KF GD+ F W+ ++ +LIQQ K DTM ED + + A S
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 62 FVLCLRDKVLREVVKDTTIK 81
L L D V+ ++ + T +
Sbjct: 63 IRLHLSDDVVNNIIDEDTAR 82
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 44.7 bits (104), Expect = 6e-04
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 2 GTKWDIEKFIGDSD-FGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARS 60
G K+++ KF GD F +W+ +++ +LIQQ KA GK ++M ED ++ + A S
Sbjct: 3 GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62
Query: 61 FFVLCLRDKVLREVVKD 77
L L D V+ +V +
Sbjct: 63 AIRLHLTDDVVNNIVDE 79
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 41.6 bits (96), Expect = 0.005
Identities = 28/97 (28%), Positives = 47/97 (47%), Gaps = 15/97 (15%)
Query: 2 GTKWDIEKFIGDSDFGLWKVK---------IEVVLIQQKCAKARKGKILFSDTMSQEDKT 52
G + ++EKF G D+ +WK K + VL + + ++ SD +E++
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62
Query: 53 KM------ADNARSFFVLCLRDKVLREVVKDTTIKVM 83
KM ARS VL + D+VLR++ K+T+ M
Sbjct: 63 KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAM 99
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 41.6 bits (96), Expect = 0.005
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 4 KWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFV 63
K+D+ D+ F LW+VK+ VL QQ+ A G + S ++K K A S+
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDEK-KRDRKAMSYIH 63
Query: 64 LCLRDKVLREVVKDTT 79
L L + +L+EV+K+ T
Sbjct: 64 LHLSNNILQEVLKEET 79
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 40.8 bits (94), Expect = 0.009
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 4 KWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFV 63
K+D+ D+ F LW+VK+ VL QQ A G + S ++K K A S+
Sbjct: 40 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KKDRKAMSYIH 98
Query: 64 LCLRDKVLREVVKDTT 79
L L + +L+EV+K+ T
Sbjct: 99 LHLSNNILQEVLKEET 114
>ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475213|gb|AAT44282.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1243
Score = 40.0 bits (92), Expect = 0.015
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 4 KWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFV 63
K+D+ D+ F LW+VK+ VL QQ A G + S ++K K A S+
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKAISYIH 63
Query: 64 LCLRDKVLREVVKDTT 79
L L + +L+EV+K+ T
Sbjct: 64 LHLSNNILQEVLKEET 79
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1170
Score = 40.0 bits (92), Expect = 0.015
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 4 KWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFV 63
K+D+ D F LW+VK++ VL QQ A G + S ++K K A S+
Sbjct: 5 KYDLSLLDRDIRFSLWQVKMQAVLAQQDLDDALSGFDKTTQDWSGDEK-KRGRKALSYIH 63
Query: 64 LCLRDKVLREVVKDTT 79
L L + +L+ V+KD T
Sbjct: 64 LHLSNNILQAVLKDET 79
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa (japonica cultivar-group)]
Length = 1007
Score = 39.7 bits (91), Expect = 0.020
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 4 KWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFV 63
K+D+ D+ F LW+VK+ VL QQ A G + S+++K K A S+
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSKDEK-KRDCKAMSYIH 63
Query: 64 LCLRDKVLREVVKDTT 79
+ L + +L+EV+K+ T
Sbjct: 64 VHLSNNILQEVLKEET 79
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 39.7 bits (91), Expect = 0.020
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 1/74 (1%)
Query: 4 KWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFV 63
K+D+ D+ F LW+VK+ VL QQ A G + S ++K K A S+
Sbjct: 212 KYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDEK-KRDRKAMSYIH 270
Query: 64 LCLRDKVLREVVKD 77
L L + +L+EV+K+
Sbjct: 271 LHLSNNILQEVLKE 284
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 39.3 bits (90), Expect = 0.026
Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 1/76 (1%)
Query: 4 KWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFV 63
K+D+ D+ F LW+VK+ VL QQ A G + S ++K K S+
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEK-KRDRKTMSYIH 63
Query: 64 LCLRDKVLREVVKDTT 79
L L + +L+EV+K+ T
Sbjct: 64 LHLSNNILQEVLKEET 79
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 38.1 bits (87), Expect = 0.057
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1 MGTKWDIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARS 60
M K++IEKF G +F LWK+K++ +L + C A + + D + ++M ++A +
Sbjct: 1 MAAKFEIEKFNG-KNFSLWKLKVKAILRKDNCLAAISERPV--DFTDDKKWSEMNEDAMA 57
Query: 61 FFVLCLRDKVLREVVKDTT 79
L + D VL + + T
Sbjct: 58 DLYLSIADGVLSSIEEKKT 76
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 36.6 bits (83), Expect = 0.17
Identities = 24/93 (25%), Positives = 44/93 (46%), Gaps = 15/93 (16%)
Query: 6 DIEKFIGDSDFGLWKVKIEVVL--------IQQKCAKARKGKILFSDTMSQEDKTKMAD- 56
++EKF G D+ +WK K+ + +++ + K +L E+K + +
Sbjct: 7 EVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEKFEA 66
Query: 57 ------NARSFFVLCLRDKVLREVVKDTTIKVM 83
ARS VL + D+VLR++ K++T M
Sbjct: 67 LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAM 99
>emb|CAB79135.1| putative transposable element [Arabidopsis thaliana]
gi|3402755|emb|CAA20201.1| putative transposable element
[Arabidopsis thaliana] gi|7444415|pir||T05178
hypothetical protein T6K22.90 - Arabidopsis thaliana
Length = 1308
Score = 36.2 bits (82), Expect = 0.22
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 24/98 (24%)
Query: 1 MGTKWDIEKFIGDSDFGLWKVKIE-------------------VVLIQQKCAKARKGKIL 41
M TK +I+ F GD DF LWK++IE +L+ + K + +
Sbjct: 3 MSTKVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESEDD 62
Query: 42 FSDTMSQED-----KTKMADNARSFFVLCLRDKVLREV 74
+D+ E+ K + +D A++F + + D VL +V
Sbjct: 63 ETDSKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKV 100
>dbj|BAA74713.1| copia-like retrotransposable element [Bombyx mori]
Length = 1316
Score = 35.8 bits (81), Expect = 0.28
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 7 IEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMADNARSFFVLCL 66
+ +F G ++F W +I +L +++C +A + I S++ K K A ARS V CL
Sbjct: 10 LPEFTG-TNFSTWIFRISCILEEKECKEAIEDGITEEILKSEKFKKKDA-KARSLIVNCL 67
Query: 67 RDKVLREVVKDTTIKVM 83
DK L V T+ K M
Sbjct: 68 SDKHLEYVRSATSAKEM 84
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 35.4 bits (80), Expect = 0.37
Identities = 30/94 (31%), Positives = 47/94 (49%), Gaps = 20/94 (21%)
Query: 6 DIEKFIGDSDFGLWKVKI----EVV-----LIQQKCAKARKGKILFSDTMSQEDKT---K 53
++EKF GD D+ LWK K+ E++ L +++ A SD +Q+ +T K
Sbjct: 7 EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66
Query: 54 MAD--------NARSFFVLCLRDKVLREVVKDTT 79
+ D ARS +L L + VLR+V+K T
Sbjct: 67 LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKT 100
>emb|CAB78169.1| putative retrotransposon [Arabidopsis thaliana]
gi|4539406|emb|CAB40039.1| putative retrotransposon
[Arabidopsis thaliana] gi|7444416|pir||T04181
hypothetical protein F7L13.40 - Arabidopsis thaliana
Length = 1230
Score = 35.0 bits (79), Expect = 0.49
Identities = 26/91 (28%), Positives = 41/91 (44%), Gaps = 13/91 (14%)
Query: 6 DIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILFSDTMSQEDKTKMAD--------- 56
++EKF G D+ LWK K+ + A + SD + E++ K ++
Sbjct: 7 EMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEALME 66
Query: 57 ----NARSFFVLCLRDKVLREVVKDTTIKVM 83
ARS VL + D+VLR+ K+ T M
Sbjct: 67 EKRQKARSTIVLSVSDQVLRKSKKEKTAPSM 97
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301702|pir||E84601 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1333
Score = 33.1 bits (74), Expect = 1.8
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 25/98 (25%)
Query: 6 DIEKFIGDSDFGLWKVK--------------------IEVVLIQQKCAKARKGKILFSDT 45
++EKF G D+ +WK K +E V Q + K ++L +
Sbjct: 7 EVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLRREL 66
Query: 46 MSQEDKTKMADNARSFFVLCLRDKVLREVVKDTTIKVM 83
+ ++ + ARS VL + D+VLR++ K+ + M
Sbjct: 67 LEEKRR-----KARSAIVLSVTDRVLRKIKKEQSAAAM 99
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 32.3 bits (72), Expect = 3.1
Identities = 26/90 (28%), Positives = 42/90 (45%), Gaps = 20/90 (22%)
Query: 6 DIEKFIGDSDFGLWKVKI--------------EVVLIQQKCAKARKGKILFSDTMSQEDK 51
++EK G+ D+ LWK K+ E I+++ + A +L EDK
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLL----TKTEDK 62
Query: 52 T--KMADNARSFFVLCLRDKVLREVVKDTT 79
+ ARS +L L + VLR+V+K+ T
Sbjct: 63 VLKEKRGKARSTVILSLGNHVLRKVIKEKT 92
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 637
Score = 32.3 bits (72), Expect = 3.1
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 6 DIEKFIGDSDFGLWKVKIEVVLIQQKCAKARKGKILF----SDTMSQEDKTKMAD----- 56
D+EKF G D+ WKVK L + K ++ ++ S E + K +
Sbjct: 7 DLEKFDGFGDYISWKVKFLDHLKDLDLLEGLKEEVCLEKGSGNSGSDEGRVKDLEECKIL 66
Query: 57 -----NARSFFVLCLRDKVLREVVKDTT 79
AR+F ++ + D VLR+++K+ T
Sbjct: 67 EEKKRKARAFIIVSVGDHVLRKIMKERT 94
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,575,475
Number of Sequences: 2540612
Number of extensions: 3429173
Number of successful extensions: 9068
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9053
Number of HSP's gapped (non-prelim): 22
length of query: 83
length of database: 863,360,394
effective HSP length: 59
effective length of query: 24
effective length of database: 713,464,286
effective search space: 17123142864
effective search space used: 17123142864
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 68 (30.8 bits)
Medicago: description of AC148819.5