BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148816.5 + phase: 0 /pseudo
(211 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 148 9e-35
gb|AAM08777.1| Putative retroelement [Oryza sativa] 144 1e-33
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 142 6e-33
ref|NP_912588.1| Putative non-LTR retroelement reverse transcrip... 133 3e-30
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 132 5e-30
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 128 9e-29
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 128 1e-28
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 127 2e-28
emb|CAE04648.2| OSJNBa0061G20.4 [Oryza sativa (japonica cultivar... 127 2e-28
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 127 2e-28
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv... 126 4e-28
gb|AAT85026.1| hypothetical protein [Oryza sativa (japonica cult... 124 2e-27
gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor] 123 3e-27
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 122 7e-27
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 122 7e-27
ref|XP_468883.1| putative reverse transcriptase [Oryza sativa (j... 120 2e-26
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 120 3e-26
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 120 3e-26
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 119 4e-26
gb|AAV25285.1| hypothetical protein [Oryza sativa (japonica cult... 117 2e-25
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 148 bits (374), Expect = 9e-35
Identities = 74/202 (36%), Positives = 119/202 (58%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
++HLQYADDT+ + +N+ T+K +L ++ +SGLKIN+ KS ++ I E
Sbjct: 214 LTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMVIGGDEMETQRVA 273
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
D NC AG + F YLG+P+ N + + + I RL TW Y+S+GG+ +L+NS
Sbjct: 274 DLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSYGGKAILINSC 333
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
L+S+P++ + + GV ++ I+ F W G+ +K + W+++C+ KE GG+
Sbjct: 334 LSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFI 393
Query: 181 DIRVMNISLLAKWRWRLIDGRE 202
D R MNI+LL KW +RL G+E
Sbjct: 394 DTRKMNIALLCKWIYRLESGKE 415
>gb|AAM08777.1| Putative retroelement [Oryza sativa]
Length = 779
Score = 144 bits (364), Expect = 1e-33
Identities = 71/197 (36%), Positives = 118/197 (59%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
+SHLQYA+DT+ KA+ +N+ +K +L F+ +SG+KIN+ KS + + V ++ +
Sbjct: 73 LSHLQYANDTILFAKATKENVLALKFLLFCFEEMSGMKINYQKSEVYVLGVPKEEEELYV 132
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
D LNC GS+ F YLGLP+G P+++ I RL +W + ++S+GGR + +N+
Sbjct: 133 DMLNCKVGSLPFTYLGLPMGVGKVGKRDLLPIMQKIEKRLQSWHSGHLSYGGREIRINTF 192
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
L+S+P++ + F K+ K + I+ F W G G KK + + +C+ K+ GG+
Sbjct: 193 LSSVPMYAMGFFKLPEEFHKNLETIRGRFYWQGNGKKKKYHLIKLQGLCRPKDFGGLGFL 252
Query: 181 DIRVMNISLLAKWRWRL 197
D R+MN LL+KW +L
Sbjct: 253 DTRIMNFCLLSKWIMKL 269
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 142 bits (358), Expect = 6e-33
Identities = 73/209 (34%), Positives = 118/209 (55%), Gaps = 1/209 (0%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
++ LQYADDT+ + + + +K IL F+ +SGLKINF+KS + +++ +
Sbjct: 483 IAILQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINFNKSEVFCFGEAKEKQDLYS 542
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
+ C GS+ KYLG+P+ W+ + +L W R S GGR++LLNS
Sbjct: 543 NIFTCKVGSLPLKYLGIPIDQKRILNKDWKLAENKMEHKLGCWQGRLQSIGGRLILLNST 602
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
L+S+P++ +SF ++ GV +RI ++ FLW G +K VNW VC ++ GG+ V
Sbjct: 603 LSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLVCSPRDQGGLGVL 662
Query: 181 DIRVMNISLLAKWRWRLIDGREALWK*VL 209
D+ MN ++L KW WRL + E W+ ++
Sbjct: 663 DLEAMNKAMLGKWIWRL-ENEEGWWQEII 690
>ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|22748339|gb|AAN05341.1|
Putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 603
Score = 133 bits (335), Expect = 3e-30
Identities = 70/211 (33%), Positives = 120/211 (56%), Gaps = 1/211 (0%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
+S LQYADDT+ + + + +K +L F+ ++GLKINF KS L S+
Sbjct: 130 LSILQYADDTILFMEHDLDEVKNLKLVLSTFEKLAGLKINFHKSELFCYGKSKFAENEYV 189
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
C +G+ F+YLG+P+ S W+ + E +L++W + +S GGR+VL+NSV
Sbjct: 190 MLFGCRSGTYPFRYLGIPMHHKKLSNKDWQIIEERFQRKLSSWKGKCLSVGGRLVLINSV 249
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
L+S+ +F LSF ++ G+ K++ + F W G +K W +C K+ GG+ ++
Sbjct: 250 LSSLAMFMLSFFEVPKGILKKLDYYRSRFFWQSDGHKRKYRLARWSVICTPKDCGGLGIQ 309
Query: 181 DIRVMNISLLAKWRWRLIDGREALWK*VLVK 211
++ V N LL+KW ++LI+ + +W+ +L K
Sbjct: 310 NLNVQNKCLLSKWLYKLIN-EDGVWQKLLRK 339
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 132 bits (333), Expect = 5e-30
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 2/193 (1%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
+S LQY DD + ++ MK++L F+ +SGLKINF KS L + ++
Sbjct: 909 LSILQYVDDIVLFMNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFGEALEYRDQYA 968
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
C G+ F+YLG+P+ + W+ +VE +L++W + +S GGR+ L+NSV
Sbjct: 969 QLFGCQVGNFPFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTLINSV 1028
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
L+S+P++ +SFL + GV K++ ++ F W G G KK W +C+ K+ G + +
Sbjct: 1029 LSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQGDGHKKKYQLAKWDIICRPKDQGRLGIH 1088
Query: 181 DIRVMNISLLAKW 193
D+ V I+L+ +W
Sbjct: 1089 DLEV--ITLVTRW 1099
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 128 bits (322), Expect = 9e-29
Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 1/209 (0%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
+S LQYADDT+ + +K +L F+ +S LKINF KS L ++D
Sbjct: 1392 LSILQYADDTILFMDHDLDEARDLKLVLSTFEKLSSLKINFYKSELFCYGKAKDVEHEYV 1451
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
C FKYLG+ + + W+ + E I +L++W +++S GGR+VL+NSV
Sbjct: 1452 KLFGCDTEDYPFKYLGIRMHHKRINNKDWQGVEERIQKKLSSWKGKFLSVGGRLVLINSV 1511
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
L+++ IF LSF ++ G+ K++ + F W KK W +C+ KE GG+ ++
Sbjct: 1512 LSNLAIFMLSFFEIPKGILKKLDYYRSRFFWQCDEHKKKYRLARWSVLCKPKECGGLGIQ 1571
Query: 181 DIRVMNISLLAKWRWRLIDGREALWK*VL 209
++ + N LL+KW ++LI+ E +W+ +L
Sbjct: 1572 NLEIQNKCLLSKWLYKLIN-EEGVWQDIL 1599
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 128 bits (321), Expect = 1e-28
Identities = 67/190 (35%), Positives = 105/190 (55%)
Query: 4 LQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFL 63
LQYADDT+ + + +K IL F+ +SGLKINF+KS + I + D +
Sbjct: 648 LQYADDTIFLLPDNETYAKNLKYILCLFEQLSGLKINFNKSEVFCIGEAADKAEVFSQIF 707
Query: 64 NCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNS 123
CS G + KYLG+P+ + W + +L W + S GGR++L+NS L+S
Sbjct: 708 TCSVGVLPMKYLGIPLDQKRITKKDWRNAENKMESKLGCWQGKLQSIGGRLILINSSLSS 767
Query: 124 MPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVKDIR 183
+P++ +SF K+ GV +++ +R FLW G +K V W +C ++ GG+ V D+
Sbjct: 768 VPMYMISFFKLPKGVKEKMDFFRRRFLWQEDQGIRKYHLVQWPIICSPRDQGGLGVLDLD 827
Query: 184 VMNISLLAKW 193
+MN +LL KW
Sbjct: 828 IMNKALLGKW 837
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 127 bits (319), Expect = 2e-28
Identities = 68/186 (36%), Positives = 109/186 (58%), Gaps = 1/186 (0%)
Query: 24 MKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFLNCSAGSITFKYLGLPVGANM 83
MKAIL F+ +SGLKINF KS + +++ C++GS F+YLG+P+
Sbjct: 1 MKAILCVFEHLSGLKINFHKSEIFCFGGAKEMEDQYRQLFGCNSGSFPFRYLGIPIHYRK 60
Query: 84 RSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNSMPIFYLSFLKMLVGVWKRIV 143
S W+ + + +L+TW + S+GGR+VLLNSVL+S+P+F L F ++ GV +R+
Sbjct: 61 LRNSDWKCVEDMFQRKLSTWKGKNNSYGGRLVLLNSVLSSLPMFMLLFFEIPRGVLQRLD 120
Query: 144 RIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVKDIRVMNISLLAKWRWRLIDGREA 203
+ F W KK W + + K+ GG+ V ++ +MN LL+KW ++L++G E
Sbjct: 121 YYRSSFFWSSDSQKKKYRLTKWDYIYRLKDQGGLGVLNLDIMNRCLLSKWLFKLLNG-EG 179
Query: 204 LWK*VL 209
LW+ +L
Sbjct: 180 LWQNLL 185
>emb|CAE04648.2| OSJNBa0061G20.4 [Oryza sativa (japonica cultivar-group)]
gi|50923465|ref|XP_472093.1| OSJNBa0061G20.4 [Oryza
sativa (japonica cultivar-group)]
Length = 632
Score = 127 bits (319), Expect = 2e-28
Identities = 77/192 (40%), Positives = 112/192 (58%), Gaps = 4/192 (2%)
Query: 4 LQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFL 63
+QYADDTL KAS + L+T+KA+L+ FQ+ + LK+NF+KS L+ INV E
Sbjct: 145 VQYADDTLPYLKASGKELFTLKALLQTFQLGTSLKVNFNKSCLIPINVDEGKAQNLAAVF 204
Query: 64 NCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNS 123
C GS+ F YLGLP+G + + PLV+ RL T + ++S+G R+ L+NSV +S
Sbjct: 205 GCQLGSLPFTYLGLPLGTIKPKVIDFAPLVDRTERRL-TSNAYFLSYGVRLTLVNSVFSS 263
Query: 124 MPIFYLSFLKMLVGVWKRIVRIQR*FLWGG--VGGGKKISWVNWKSVCQQKENGGVRVKD 181
+P +Y+ L + V I R +R LW G V KK S W VC+ K GG+ V +
Sbjct: 264 LPTYYMCTLMLPKTVIDSIDRARRHCLWRGSEVNSNKK-SLAAWHKVCKPKRKGGLGVLN 322
Query: 182 IRVMNISLLAKW 193
+ + N +LL K+
Sbjct: 323 LSIQNQALLIKF 334
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 127 bits (319), Expect = 2e-28
Identities = 67/202 (33%), Positives = 110/202 (54%), Gaps = 4/202 (1%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
++HLQYADDT+ + QN+ T K IL F+ +SGLKIN+ KS ++ + + +
Sbjct: 399 LTHLQYADDTILFMTNNDQNVITTKFILHCFEAMSGLKINYQKSEVIVLGENPEETKRVA 458
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
D NC G YLG+P+ + + + I RL+TW +S+GG+ +L
Sbjct: 459 DLFNCKCGKFPMTYLGIPISEGRLTAADLAIPPDKIEKRLSTWKCGLLSYGGKAIL---- 514
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
+NS P++ + F + +R+ I+ F W G+ +K V W+++C+ K+ GG+
Sbjct: 515 VNSSPMYMMGFYMLPEQTHQRMDSIRSRFFWEGIERKRKYHMVKWEALCRPKDFGGLGFL 574
Query: 181 DIRVMNISLLAKWRWRLIDGRE 202
D RVMN LL KW ++L G++
Sbjct: 575 DTRVMNKVLLCKWIFKLESGQK 596
>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
sativa (japonica cultivar-group)]
Length = 593
Score = 126 bits (317), Expect = 4e-28
Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 3/199 (1%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
+S LQYADDT+ + +++ +K +L F+ +SGLKINF KS L+ + +
Sbjct: 127 LSILQYADDTILFMEHDLEDAKNLKLVLSAFERLSGLKINFHKSELLCFGKAIEVEREYA 186
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
C GS T KYLGLP+ S W+ + E RL +W + +S GGR+VL+NSV
Sbjct: 187 LLFGCKTGSYTLKYLGLPMHYRKLSNKDWKEVEERFQKRLGSWKGKLLSVGGRLVLINSV 246
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
L+S+ ++ LSF ++ G+ K++ + F W KK W +C+ KE GG+ ++
Sbjct: 247 LSSLAMYMLSFFEVPKGIIKKLDYYRSRFFWQSDEHKKKYRLARWSVLCKPKECGGLGIQ 306
Query: 181 DIRVMNISL---LAKWRWR 196
++ V N L LAK W+
Sbjct: 307 NLEVQNKCLLRGLAKLVWQ 325
>gb|AAT85026.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 352
Score = 124 bits (310), Expect = 2e-27
Identities = 72/191 (37%), Positives = 110/191 (56%), Gaps = 2/191 (1%)
Query: 16 ASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFLNCSAGSITFKYL 75
AS + L+ +KA+L+ F +GLK+NF KS L+ INVSED M GS+ F YL
Sbjct: 9 ASGKELFVLKALLQSFAQGTGLKVNFHKSCLIPINVSEDKAEMLAGVFGYRTGSMPFTYL 68
Query: 76 GLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNSMPIFYLSFLKML 135
GLP+G + + PLV+ I RL+ ++ ++S G R+ L+NSV +S+P +Y+ L++
Sbjct: 69 GLPLGTTKPRVIDFAPLVDRIERRLSA-NSAFLSNGDRLTLMNSVFSSLPTYYMCILQLP 127
Query: 136 VGVWKRIVRIQR*FLW-GGVGGGKKISWVNWKSVCQQKENGGVRVKDIRVMNISLLAKWR 194
V + I R +R LW GG K S V W VC+ K GG+ V ++ + N +LL K+
Sbjct: 128 KSVIENIDRARRHCLWRGGDINSNKKSLVAWDKVCKPKVKGGLGVINLSIQNQALLLKFL 187
Query: 195 WRLIDGREALW 205
+ + R+ W
Sbjct: 188 DKFYNRRQVPW 198
>gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1998
Score = 123 bits (309), Expect = 3e-27
Identities = 69/203 (33%), Positives = 110/203 (53%), Gaps = 2/203 (0%)
Query: 4 LQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFL 63
+QYADDTL I + + L +K+I+ F +GLK+N KS ++ IN+ E+ +
Sbjct: 1490 IQYADDTLIIAEGDTRQLLILKSIINTFSEATGLKVNLQKSMMLPINMDEERLDTLARTF 1549
Query: 64 NCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNS 123
CS GS F YLGLP+G ++ ++PL+ RL + +T ++S GR+ L N+V +
Sbjct: 1550 GCSKGSFPFTYLGLPLGITKPTIQDYQPLINKCEARLGSVAT-FLSEAGRLELTNAVFTA 1608
Query: 124 MPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVG-GGKKISWVNWKSVCQQKENGGVRVKDI 182
+P FY+ L + V +I + ++ LW G G +K WK VC+ K GG+ V DI
Sbjct: 1609 LPTFYMCTLAIPKSVIHKIDKFRKHCLWRGNGINARKPPKAAWKLVCKPKNEGGLGVIDI 1668
Query: 183 RVMNISLLAKWRWRLIDGREALW 205
N +LL K + + ++ W
Sbjct: 1669 EKQNEALLMKNLDKFFNKKDTPW 1691
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411200|pir||G84473 hypothetical protein
At2g05980 [imported] - Arabidopsis thaliana
Length = 1352
Score = 122 bits (306), Expect = 7e-27
Identities = 65/205 (31%), Positives = 110/205 (52%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
++HL +ADD + + +++ AI F +S LKI+ KS++ +S +
Sbjct: 845 LTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSIL 904
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
G++ KYLGLP+ + S + PLVE I R+ +W+ R++SF GR+ L+ SV
Sbjct: 905 QQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSV 964
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
L+S+ F+LS ++ + I ++ FLW G K + + W VC+ KE GG+ +K
Sbjct: 965 LSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLK 1024
Query: 181 DIRVMNISLLAKWRWRLIDGREALW 205
++ N L K WR++ R++LW
Sbjct: 1025 PLKEANEVSLLKLIWRILSARDSLW 1049
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 122 bits (306), Expect = 7e-27
Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 1/212 (0%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLV-GINVSEDFMAMA 59
+SH+ +ADD + +ASV + ++ +L F SG K++ KS + NVS + +
Sbjct: 539 LSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLI 598
Query: 60 CDFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNS 119
+ KYLG+P+ + T+ ++E + RL W R +S GRI L +
Sbjct: 599 SEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKA 658
Query: 120 VLNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRV 179
VL+S+P+ +S + + V + R R FLWG KK ++W+ +C+ K GG+ +
Sbjct: 659 VLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGL 718
Query: 180 KDIRVMNISLLAKWRWRLIDGREALWK*VLVK 211
+ R MN +L+AK WRL+ +E+LW V+ K
Sbjct: 719 RSARDMNKALVAKVGWRLLQDKESLWARVVRK 750
>ref|XP_468883.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29126371|gb|AAO66563.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 746
Score = 120 bits (302), Expect = 2e-26
Identities = 69/204 (33%), Positives = 112/204 (54%), Gaps = 3/204 (1%)
Query: 4 LQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFL 63
+QYADDTL I KA + ++ +K IL+ + +GLKIN+ KS ++ INV E+ +
Sbjct: 434 IQYADDTLIIMKACQKEIFNLKGILQSYSESTGLKINYQKSCMIHINVLEEDKDILSKTF 493
Query: 64 NCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNS 123
C +G++ F YLGLPVG + + PL++ + RL T +++ G R+ L+N VL+S
Sbjct: 494 GCQSGNLPFTYLGLPVGTTKPKIIDFAPLIDRVERRLPA-VTMFLNHGQRLTLVNFVLSS 552
Query: 124 MPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVG--GGKKISWVNWKSVCQQKENGGVRVKD 181
+P +Y+ LK+ V I R +R LW S W VC+ K GG+ + +
Sbjct: 553 LPTYYMCSLKIPKKVIDHIDRARRHCLWRKSPNLSANSHSLAAWDLVCRPKSKGGLGIIN 612
Query: 182 IRVMNISLLAKWRWRLIDGREALW 205
+ + NI+LL K + + ++ W
Sbjct: 613 LELQNIALLMKHLDKFYNRKDVPW 636
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|7488317|pir||T01610
RNA-directed DNA polymerase homolog At2g18820 -
Arabidopsis thaliana
Length = 1412
Score = 120 bits (301), Expect = 3e-26
Identities = 64/205 (31%), Positives = 109/205 (52%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMAC 60
++HL +ADD + S +L + AI + F SGL I+ KS+L ++S + A
Sbjct: 953 LTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASIL 1012
Query: 61 DFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSV 120
+GS+ +YLGLP+ +++ PL+E I R+++W R++S+ GR+ LLNSV
Sbjct: 1013 ARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSV 1072
Query: 121 LNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRVK 180
++S+ F++S ++ + I +I FLW G + V W VC+ K GG+ ++
Sbjct: 1073 ISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLR 1132
Query: 181 DIRVMNISLLAKWRWRLIDGREALW 205
+ N K WRL+ + +LW
Sbjct: 1133 SLVDANKICCFKLIWRLVSAKHSLW 1157
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 120 bits (300), Expect = 3e-26
Identities = 67/218 (30%), Positives = 114/218 (51%), Gaps = 19/218 (8%)
Query: 4 LQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFL 63
+QYADDTL I +A ++ +++ L F +GL+INF+KS+++ +++ + + L
Sbjct: 684 IQYADDTLVICRAEEDDVLALRSTLLQFSKATGLQINFAKSTMISLHIDRSKESSLSELL 743
Query: 64 NCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNS 123
C S+ YLGLP+ + + + +P+V + L W +S R++L+N+VL+S
Sbjct: 744 QCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERLILVNAVLSS 803
Query: 124 MPIFYLSFLKMLVGVWKRIVRIQR*FLWGG---VGGGKKISWVNWKSVCQQKENGGVRVK 180
+P++ +S K+ V + I + +R F W G G K + V W VC KE GG+ +K
Sbjct: 804 VPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCL--VAWDEVCTAKEKGGLGIK 861
Query: 181 DIRVMNISLLAK--------------WRWRLIDGREAL 204
++ N +LL K W W+ DGR L
Sbjct: 862 SLKTQNEALLLKRLFNLFSDNSSWTNWIWKEFDGRSLL 899
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 119 bits (299), Expect = 4e-26
Identities = 65/206 (31%), Positives = 111/206 (53%), Gaps = 1/206 (0%)
Query: 1 VSHLQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLV-GINVSEDFMAMA 59
+SH+ +ADD + +ASV + ++ +L F + SG K++ KS + NVS D +
Sbjct: 201 LSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVSRDLGKLI 260
Query: 60 CDFLNCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNS 119
D S+ KYLG+PV + T+ ++E + RL W R++S GR+ L +
Sbjct: 261 SDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKA 320
Query: 120 VLNSMPIFYLSFLKMLVGVWKRIVRIQR*FLWGGVGGGKKISWVNWKSVCQQKENGGVRV 179
VL+S+P+ +S + + + ++ R FLWG +K ++WK VC+ + GG+ +
Sbjct: 321 VLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGI 380
Query: 180 KDIRVMNISLLAKWRWRLIDGREALW 205
+ + MN +LL+K WRLI +LW
Sbjct: 381 RKAQDMNKALLSKVGWRLIQDYHSLW 406
>gb|AAV25285.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 720
Score = 117 bits (294), Expect = 2e-25
Identities = 69/204 (33%), Positives = 115/204 (55%), Gaps = 10/204 (4%)
Query: 4 LQYADDTLCIGKASVQNLWTMKAILRGFQMVSGLKINFSKSSLVGINVSEDFMAMACDFL 63
+QYADDTL I KA + ++ +KA+L + M +GLKINF KS ++ IN M +
Sbjct: 386 IQYADDTLIIMKADQKEIFCLKALLNTYAMCTGLKINFHKSFMIPINTDSTKMEVL---- 441
Query: 64 NCSAGSITFKYLGLPVGANMRSMSTWEPLVETIGGRLNTWSTRYISFGGRIVLLNSVLNS 123
AG++ F YLGLP+ +S + PL++ + RL + +T ++++G R+ ++NSVL+S
Sbjct: 442 ---AGTLPFTYLGLPLVTTKPKVSDFAPLIDRVERRLPS-TTIFLNYGQRLTMVNSVLSS 497
Query: 124 MPIFYLSFLKMLVGVWKRIVRIQR*FLW--GGVGGGKKISWVNWKSVCQQKENGGVRVKD 181
+P +Y+ LK+ V I R +R LW + S W VC+ K+ GG+ + +
Sbjct: 498 LPTYYMCTLKLPKKVILHIDRARRHCLWRKNNELETRTHSLAAWDIVCKPKKKGGLGIIN 557
Query: 182 IRVMNISLLAKWRWRLIDGREALW 205
+ + N +LL K + + R+ W
Sbjct: 558 LEIQNTALLMKHLHKFFNNRDLPW 581
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.330 0.142 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 357,944,556
Number of Sequences: 2540612
Number of extensions: 13750793
Number of successful extensions: 35343
Number of sequences better than 10.0: 314
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 34809
Number of HSP's gapped (non-prelim): 382
length of query: 211
length of database: 863,360,394
effective HSP length: 122
effective length of query: 89
effective length of database: 553,405,730
effective search space: 49253109970
effective search space used: 49253109970
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 72 (32.3 bits)
Medicago: description of AC148816.5