BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148755.5 + phase: 0
(569 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 270 1e-70
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 234 7e-60
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 196 1e-48
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 194 6e-48
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 194 6e-48
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 194 8e-48
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 194 8e-48
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 192 2e-47
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 187 8e-46
emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-gro... 187 1e-45
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 186 1e-45
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv... 184 5e-45
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 181 7e-44
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 180 1e-43
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 178 4e-43
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 174 9e-42
pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana gi... 173 1e-41
gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor] 173 2e-41
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 171 6e-41
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 171 8e-41
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 270 bits (689), Expect = 1e-70
Identities = 175/531 (32%), Positives = 270/531 (49%), Gaps = 44/531 (8%)
Query: 15 GVGTRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNI 74
G+GT G+ +++ LQ+ADDT+ + + + ++ +L L E++SGLK+NFNKS V
Sbjct: 474 GLGTNGDNKIAILQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINFNKSEVFCFGE 533
Query: 75 STSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCF--WKPVLDRISARLSSWNNKYLS 132
+ + + CK G +P YLG+PI D++++ WK +++ +L W + S
Sbjct: 534 AKEKQDLYSNIFTCKVGSLPLKYLGIPI--DQKRILNKDWKLAENKMEHKLGCWQGRLQS 591
Query: 133 SGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVC 192
GGRLILL S LSS+P+Y +SF++ P G+ I+ K+ W + RK V W VC
Sbjct: 592 IGGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLVC 651
Query: 193 LPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY---GEIGGMVKEGGRH 249
P QGGLGV L N ++LGKW WR L ++ G W ++ A+Y + G+ + G
Sbjct: 652 SPRDQGGLGVLDLEAMNKAMLGKWIWR-LENEEGWWQEIIYAKYCSDKPLSGLRLKAG-- 708
Query: 250 SSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDL 309
SS +W+ + V+D F ++VGNG T FW D+WLG PL QF L+ +
Sbjct: 709 SSHFWQGVMEVKDD--------FFSFCTKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGI 760
Query: 310 AVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWL 369
+ K ++ D+ R G + +RR L + R+ VN + L +N +DK W
Sbjct: 761 VITKRITIADLNRKGID----CMKFRRDLHGDKLRDWRKIVNSWEGLNLVENCKDKLWWT 816
Query: 370 LDPILGYTVKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVR 429
L +TV+ F ++ Q TS +W RVP K+ +F W ++++ T+ NL++
Sbjct: 817 LSKDGKFTVRS---FYRALKLQQTSFPNKKIWKFRVPLKIRIFIWFFTKNKILTKDNLLK 873
Query: 430 RYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQ-----GSVTQH 484
R + DN C C ETV HLF C +W ++ L + V GS Q
Sbjct: 874 R-GWRKGDNKC-QFCDKVETVQHLFFDCPLARLIWNIIACALNVKPVLSRQDLFGSWIQS 931
Query: 485 FIQFTNLAGMTRGSHDYLKIIWLACV-WAIWKERNN-CVFNNLASDPLSIV 533
+FT L I+ +A V W+IWK RN C L +DP+ +V
Sbjct: 932 MDKFTK----------NLVIVGIAAVLWSIWKCRNKACFERKLPNDPIELV 972
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 234 bits (596), Expect = 7e-60
Identities = 171/539 (31%), Positives = 263/539 (48%), Gaps = 52/539 (9%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAA 83
L+HLQ+ADDT++ + N+ T++ +L E +SGLK+N+ KS + + A
Sbjct: 214 LTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMVIGGDEMETQRVA 273
Query: 84 AVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSV 143
+ NC+ G +PF YLG+PI ++ ++I RL++W YLS GG+ IL+ S
Sbjct: 274 DLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSYGGKAILINSC 333
Query: 144 LSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVR 203
LSS+P+Y + + P G+ + ++SI + FW G E RK +KW+++C P GGLG
Sbjct: 334 LSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFI 393
Query: 204 KLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY-GEIGGMVKEGGRHSSRWWRMICNVRD 262
+ N++LL KW +RL K +L+ +Y + GG + SS++W+ + V+
Sbjct: 394 DTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEESSQFWKGLHEVK- 452
Query: 263 GRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSVEDMVR 322
KW D VGNG+ T FW D W+G+ PLK Q+ ++ + +KE +V M
Sbjct: 453 -------KWMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCADKEKTVSQMCL 505
Query: 323 AG-WEEGGGGWVWRRRLLAWEEEGVRECVNLLN---NIVLQDNIQDKWRWLLDPILGYTV 378
G W ++ RR L E + E +L N I L++ +D W L Y
Sbjct: 506 EGDW------YIELRRSLG--ERDLNEWNDLHNTPREIHLKEE-RDCIIWKLTKNGFYKA 556
Query: 379 KGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADN 438
K Y L+ G V V D+W +P KV + W +L+ R+ L ++ + N
Sbjct: 557 KTLYQALS--FGGVKDKVMQDLWRSSIPLKVKILFWLMLKGRIQAAGQL-KKMKWSGSPN 613
Query: 439 FCVGGCGIPETVDHLFIQCTSFGRVWYLVCH-----WLGIPCVFQGSVTQHFIQFTNLAG 493
+ CG E VDHL +C +W C+ W IP S + ++ N+
Sbjct: 614 CKL--CGQTEDVDHLMFRCHISQFMW--CCYRDAFGWDNIP-----SSREDLLEKLNI-- 662
Query: 494 MTRGSHDYLKIIWLACV----WAIWKERNNCVFN-NLASDPLSIVERVKLFSFLWLSSN 547
D K + LAC+ WAIW RN+ VFN L SDP + KLF F + N
Sbjct: 663 ----QKDGQKSVLLACLAAGTWAIWLMRNDWVFNGKLTSDPSHLPP--KLFLFFYSGDN 715
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 196 bits (499), Expect = 1e-48
Identities = 153/544 (28%), Positives = 244/544 (44%), Gaps = 43/544 (7%)
Query: 20 GEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSW 78
G ++HLQFADD+L + + N + ++ V + E SG K+N KSM+T G + S
Sbjct: 828 GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGST 887
Query: 79 LSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLI 138
S+ +L YLGLP +K ++ ++DR+ R S+W+ ++LS G+ I
Sbjct: 888 QSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEI 947
Query: 139 LLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQG 198
+LKSV ++PVY +S FK P GI+S IES+ +W R I WV W + +G
Sbjct: 948 MLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEG 1007
Query: 199 GLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY-GEIGGMVKEGGRHSSRWWRMI 257
GLG R L +FN +LL K WRL+ N L+ RV+KARY ++ + + + S W
Sbjct: 1008 GLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGW--- 1064
Query: 258 CNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSV 317
++ DG LL R ++G+G+N DN + P + +N E +
Sbjct: 1065 ASLLDGIALL-----KKGTRHLIGDGQNIRIGLDNIVDSHPPR---------PLNTEETY 1110
Query: 318 EDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVN-----LLNNIVL-QDNIQDKWRWLLD 371
++M E G + + W++ + + V+ ++ I L + DK W +
Sbjct: 1111 KEMTINNLFERKGSYYF------WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYN 1164
Query: 372 PILGYTVKGTYCFLTNMEGQVTSGVG---------FDVWHRRVPSKVSLFAWRLLQDRVA 422
YTV+ Y LT+ + +W+ + K+ F WR L +A
Sbjct: 1165 TTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALA 1224
Query: 423 TRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVT 482
T L R + D C E+++H C W+L L +
Sbjct: 1225 TTERLTTRGM--RIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFE 1282
Query: 483 QHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFL 542
++ N T S D+ K++ + +W IWK RNN VFN P V K +
Sbjct: 1283 ENISNILNFVQDTTMS-DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHD 1341
Query: 543 WLSS 546
WL++
Sbjct: 1342 WLNA 1345
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 194 bits (493), Expect = 6e-48
Identities = 154/550 (28%), Positives = 250/550 (45%), Gaps = 58/550 (10%)
Query: 21 EVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTS-- 77
+V ++HL FADDTL++ + + + L ++SG +N NKS +T G N+
Sbjct: 651 KVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIK 710
Query: 78 -WLSEAAAV-LNCKTGLIPFMYLGLP--IGGDERKLCFWKPVLDRISARLSSWNNKYLSS 133
W+ + + L TG YLGLP + G +R L + + +++ +RL+ W K LS
Sbjct: 711 DWIKSRSGISLEGGTG----KYLGLPECLSGSKRDLFGF--IKEKLQSRLTGWYAKTLSQ 764
Query: 134 GGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCL 193
GG+ +LLKS+ +LPVY +S FK P + + ++ +W + RKI W+ W + L
Sbjct: 765 GGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTL 824
Query: 194 PMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVK--EGGRHSS 251
P QGG G + L FN +LL K WR+L +K L+ RV ++RY + G R S
Sbjct: 825 PKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSY 884
Query: 252 RWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAV 311
W ++ GR LL+ +R V+GNG+ TF W D WL D + +R + V
Sbjct: 885 AWRSILF----GRELLM-----QGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINV 935
Query: 312 N-KECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDN----IQDKW 366
+ K + D W R L W++ I+L+ +D +
Sbjct: 936 DLKVSQLIDPTSRNWNLN-----MLRDLFPWKDV----------EIILKQRPLFFKEDSF 980
Query: 367 RWLLDPILGYTVKGTYCFLTN-------MEGQVTSGVG--FD-VWHRRVPSKVSLFAWRL 416
WL Y+VK Y FL+ E +V V FD +W+ K+ +F W+
Sbjct: 981 CWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKA 1040
Query: 417 LQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCV 476
L + L R + +D+ C+ ET++H+ +C +VW + H
Sbjct: 1041 LHGAIPVEDRLRTRGI--RSDDGCLMCDTENETINHILFECPLARQVW-AITHLSSAGSE 1097
Query: 477 FQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERV 536
F SV + + +L H +L+ + +W +WK RN +F S ++V++
Sbjct: 1098 FSNSVYTNMSRLIDLTQQNDLPH-HLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKA 1156
Query: 537 KLFSFLWLSS 546
W S+
Sbjct: 1157 YEAYHEWFSA 1166
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 194 bits (493), Expect = 6e-48
Identities = 154/550 (28%), Positives = 250/550 (45%), Gaps = 58/550 (10%)
Query: 21 EVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTS-- 77
+V ++HL FADDTL++ + + + L ++SG +N NKS +T G N+
Sbjct: 672 KVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIK 731
Query: 78 -WLSEAAAV-LNCKTGLIPFMYLGLP--IGGDERKLCFWKPVLDRISARLSSWNNKYLSS 133
W+ + + L TG YLGLP + G +R L + + +++ +RL+ W K LS
Sbjct: 732 DWIKSRSGISLEGGTG----KYLGLPECLSGSKRDLFGF--IKEKLQSRLTGWYAKTLSQ 785
Query: 134 GGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCL 193
GG+ +LLKS+ +LPVY +S FK P + + ++ +W + RKI W+ W + L
Sbjct: 786 GGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTL 845
Query: 194 PMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVK--EGGRHSS 251
P QGG G + L FN +LL K WR+L +K L+ RV ++RY + G R S
Sbjct: 846 PKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSY 905
Query: 252 RWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAV 311
W ++ GR LL+ +R V+GNG+ TF W D WL D + +R + V
Sbjct: 906 AWRSILF----GRELLM-----QGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINV 956
Query: 312 N-KECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDN----IQDKW 366
+ K + D W R L W++ I+L+ +D +
Sbjct: 957 DLKVSQLIDPTSRNWNLN-----MLRDLFPWKDV----------EIILKQRPLFFKEDSF 1001
Query: 367 RWLLDPILGYTVKGTYCFLTN-------MEGQVTSGVG--FD-VWHRRVPSKVSLFAWRL 416
WL Y+VK Y FL+ E +V V FD +W+ K+ +F W+
Sbjct: 1002 CWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKA 1061
Query: 417 LQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCV 476
L + L R + +D+ C+ ET++H+ +C +VW + H
Sbjct: 1062 LHGAIPVEDRLRTRGI--RSDDGCLMCDTENETINHILFECPLARQVW-AITHLSSAGSE 1118
Query: 477 FQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERV 536
F SV + + +L H +L+ + +W +WK RN +F S ++V++
Sbjct: 1119 FSNSVYTNMSRLIDLTQQNDLPH-HLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKA 1177
Query: 537 KLFSFLWLSS 546
W S+
Sbjct: 1178 YEAYHEWFSA 1187
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 194 bits (492), Expect = 8e-48
Identities = 153/544 (28%), Positives = 242/544 (44%), Gaps = 43/544 (7%)
Query: 20 GEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSW 78
G ++HLQFADD+L + + N + ++ V + E SG K+N KSM+T G + S
Sbjct: 1054 GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGST 1113
Query: 79 LSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLI 138
S +L YLGLP +K ++ ++DR+ R S+W+ ++LS G+ I
Sbjct: 1114 QSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEI 1173
Query: 139 LLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQG 198
+LKSV ++PVY +S FK P GI+S IES+ +W R I WV W + +G
Sbjct: 1174 MLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEG 1233
Query: 199 GLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY-GEIGGMVKEGGRHSSRWWRMI 257
GLG R L +FN +LL K WRL+ N L+ RV+KARY ++ + + + S W
Sbjct: 1234 GLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGW--- 1290
Query: 258 CNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSV 317
++ DG LL R ++G+G+N DN + P + +N E +
Sbjct: 1291 ASLLDGIALL-----KKGTRHLIGDGQNIRIGLDNIVDSHPPR---------PLNTEETY 1336
Query: 318 EDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVN-----LLNNIVL-QDNIQDKWRWLLD 371
++M E G + + W++ + + V+ ++ I L + DK W +
Sbjct: 1337 KEMTINNLFERKGSYYF------WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYN 1390
Query: 372 PILGYTVKGTYCFLTNMEGQVTSGVG---------FDVWHRRVPSKVSLFAWRLLQDRVA 422
YTV+ Y LT+ + +W+ + K+ F WR L +A
Sbjct: 1391 TTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALA 1450
Query: 423 TRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVT 482
T L R + D C E+++H C W L L +
Sbjct: 1451 TTERLTTRGM--RIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFE 1508
Query: 483 QHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFL 542
++ N T S D+ K++ + +W IWK RNN VFN P V K +
Sbjct: 1509 ENISNILNFVQDTTMS-DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHD 1567
Query: 543 WLSS 546
WL++
Sbjct: 1568 WLNA 1571
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 194 bits (492), Expect = 8e-48
Identities = 153/548 (27%), Positives = 246/548 (43%), Gaps = 64/548 (11%)
Query: 27 LQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAAAVL 86
+Q+ADDTL+I +V +R+ LL K +GL++NF KS + ++I S S + +L
Sbjct: 684 IQYADDTLVICRAEEDDVLALRSTLLQFSKATGLQINFAKSTMISLHIDRSKESSLSELL 743
Query: 87 NCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSVLSS 146
CK +P YLGLP+ + +P++ ++ + L+ W LS RLIL+ +VLSS
Sbjct: 744 QCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERLILVNAVLSS 803
Query: 147 LPVYFLSFFKAPTGIISSIESIFKKKFWGGCEV-SRKIAWVKWDSVCLPMSQGGLGVRKL 205
+PVY +S FK P +I +I+ + FW G + S V WD VC +GGLG++ L
Sbjct: 804 VPVYAMSAFKLPPKVIEAIDKRRRAFFWTGDDTCSGAKCLVAWDEVCTAKEKGGLGIKSL 863
Query: 206 GEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEGGRHSSRWWRMICNVRDGRG 265
N +LL K + L D +S W I DGR
Sbjct: 864 KTQNEALLLKRLFNLFSD--------------------------NSSWTNWIWKEFDGRS 897
Query: 266 LLVG-----KW--FDDNIRRV-------VGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAV 311
LL W F + + +G+G T FW+D W G++ L QF LF +
Sbjct: 898 LLKSLPLGQHWSVFQKLLPELFKITTVHIGDGSRTSFWHDRWTGNMTLAAQFESLFSHST 957
Query: 312 NKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLD 371
+ +VE ++ G + + RL + + ++E +L N L + + L+
Sbjct: 958 DDLATVEQILSFGIYD-----ILTPRLSSAAQNDLQELQTILQNFSLTNESDTR----LN 1008
Query: 372 PILGYTVKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRY 431
LG T L + G + F +W R+P K+ LFAW L++DR++T+ NL+++
Sbjct: 1009 NRLGNLTTKTIYDLRSPPGFPSPNWKF-IWDCRMPLKIKLFAWLLVRDRLSTKLNLLKKK 1067
Query: 432 VLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTNL 491
++Q A C ET DHL C + + W + + T++ Q
Sbjct: 1068 IVQTAT--CDICSTTDETADHLSFNCP------FAISFWQALHIQPIINETKYLSQLKAP 1119
Query: 492 AGM-TRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSFLWLSSNVAS 550
A + TR + + ++ C W +W R++ VF S ++R S LW +
Sbjct: 1120 ATIPTR----HFQSFFMLCFWVLWNHRHDVVFRGRPPSIASCLQRGISESSLWAETFTPD 1175
Query: 551 FPFGFHDW 558
F W
Sbjct: 1176 DRFVIDVW 1183
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 192 bits (488), Expect = 2e-47
Identities = 139/455 (30%), Positives = 212/455 (46%), Gaps = 26/455 (5%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAA 83
L+HLQ+ADDT++ + NV T + +L E +SGLK+N+ KS V + + A
Sbjct: 399 LTHLQYADDTILFMTNNDQNVITTKFILHCFEAMSGLKINYQKSEVIVLGENPEETKRVA 458
Query: 84 AVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSV 143
+ NCK G P YLG+PI D+I RLS+W LS GG+ IL
Sbjct: 459 DLFNCKCGKFPMTYLGIPISEGRLTAADLAIPPDKIEKRLSTWKCGLLSYGGKAIL---- 514
Query: 144 LSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVR 203
++S P+Y + F+ P ++SI + FW G E RK VKW+++C P GGLG
Sbjct: 515 VNSSPMYMMGFYMLPEQTHQRMDSIRSRFFWEGIERKRKYHMVKWEALCRPKDFGGLGFL 574
Query: 204 KLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARY-GEIGGMVKEGGRHSSRWWRMICNVRD 262
N LL KW ++L + +L+ +Y GG + S++WR + V+
Sbjct: 575 DTRVMNKVLLCKWIFKLESGQKDPCCDLLRRKYMMNGGGFFQSSTEGCSQFWRGLHEVK- 633
Query: 263 GRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSVEDMVR 322
L +G +D +G+G T FW D WLGD PLK +F ++ + + +V +
Sbjct: 634 -HWLKLGSCYD------LGDGSATRFWDDVWLGDTPLKIKFPYIYSIVADPGKTVSQL-- 684
Query: 323 AGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGYTVKGTY 382
W G RR L A E + + L N+ L + +D+ RW L ++ K Y
Sbjct: 685 --WSSDGWRIDLRRSLGAEELVEWEQLLADLANVHLSTD-RDRMRWKLTKSGQFSTKSLY 741
Query: 383 CFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVG 442
+T G + ++W +P K+ +F W +L+ R+ L + + D C
Sbjct: 742 REMT--FGGIRDIKMQELWKTPMPLKIKIFVWLMLKGRIQAAHQL--KKMKWNGDPLC-K 796
Query: 443 GCGIPETVDHLFIQCTSFGRVWYL---VCHWLGIP 474
CG E VDHL +C +W V HW +P
Sbjct: 797 LCGAEEDVDHLMFKCAPARFLWCCFRDVFHWDHVP 831
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 187 bits (475), Expect = 8e-46
Identities = 128/415 (30%), Positives = 202/415 (47%), Gaps = 27/415 (6%)
Query: 47 IRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDE 106
++A+L + E +SGLK+NF+KS + + + + C +G PF YLG+PI +
Sbjct: 1 MKAILCVFEHLSGLKINFHKSEIFCFGGAKEMEDQYRQLFGCNSGSFPFRYLGIPIHYRK 60
Query: 107 RKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIE 166
+ WK V D +LS+W K S GGRL+LL SVLSSLP++ L FF+ P G++ ++
Sbjct: 61 LRNSDWKCVEDMFQRKLSTWKGKNNSYGGRLVLLNSVLSSLPMFMLLFFEIPRGVLQRLD 120
Query: 167 SIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNG 226
FW +K KWD + QGGLGV L N LL KW ++LL + G
Sbjct: 121 YYRSSFFWSSDSQKKKYRLTKWDYIYRLKDQGGLGVLNLDIMNRCLLSKWLFKLL-NGEG 179
Query: 227 LWYRVLKARY---GEIGGMVKEGGRHSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNG 283
LW +L+ +Y + M + G +S++W + V+D ++F + GNG
Sbjct: 180 LWQNLLRNKYLKGKPLSHMSHKPG--TSQFWAGLMKVKD-------QFFQYGSFK-PGNG 229
Query: 284 RNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECS-VEDMVRAGWEEGGGGWVWRRRLLAWE 342
FW D WLG PLK+Q+ L+++ + + VE M + +L+ W
Sbjct: 230 MEIRFWEDTWLGLQPLKYQYPSLYNVVRKRHSTLVEVMSTTPLNVSFRRSIVGPKLVEW- 288
Query: 343 EEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGFDVWH 402
+ ++ L NI L N +D + W L ++VK Y + N + + +W
Sbjct: 289 ----NDLISRLANITL-SNEKDCFIWSLYKNGHFSVKSMYNAIINSNVIIHKRI---LWK 340
Query: 403 RRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQC 457
+VP K+ +F W L + + T+ NL++R + N C ET+ H F C
Sbjct: 341 VKVPLKIKVFMWFLHKKVILTKDNLIKR---KWRGNKQCCFCNTQETIQHFFFDC 392
>emb|CAI44611.1| P0650D04.15 [Oryza sativa (japonica cultivar-group)]
Length = 1579
Score = 187 bits (474), Expect = 1e-45
Identities = 143/517 (27%), Positives = 236/517 (44%), Gaps = 40/517 (7%)
Query: 29 FADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAAAVLNC 88
+ADDT++ + T + +L E+++GLK+NF+KS V + +S A +LNC
Sbjct: 1053 YADDTVLFIANDMHQIVTTKFILYCFEEMAGLKINFHKSEVFSIGMSELDTERVAQMLNC 1112
Query: 89 KTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSVLSSLP 148
G P YLGLPI D+ + + ++ RL+ W + LS GR + + + LSS+P
Sbjct: 1113 PVGHFPMKYLGLPISPDKILNVGFDFLGQKLEKRLTKWGSN-LSHAGRAVQINACLSSIP 1171
Query: 149 VYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVRKLGEF 208
Y + F+ P GI S + I + +W ++ K VK + + P GGLG + +
Sbjct: 1172 FYAMGFYHLPEGIHQSFDKIRGRYYWASNKLRGKYHMVKLEDMAFPKDFGGLGFTETRKM 1231
Query: 209 NLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEGGRHSSRWWRMICNVRDGRGLLV 268
N++LL KW ++ + L +L+ +Y + S++WR + N+R G +L
Sbjct: 1232 NIALLAKWIMKVDSEDKSLCIELLRKKYLTNESFFSCKIGNVSQFWRGLLNIR-GWMMLG 1290
Query: 269 GKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSVEDMVRAGWEEG 328
+W +GNG + FW D W G+ PL F A+ + C+ ++++ + +G
Sbjct: 1291 AEW-------SIGNGLSVKFWKDTWFGNCPLMTLFP-----AIYRVCNQQEILVSQVGQG 1338
Query: 329 GGGWVWRRRLLAWEE-EGVRECVNLLNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTN 387
G G + RR EE E + +++ IVL D DK W L+ YT + Y LT
Sbjct: 1339 GPGCLSFRRSFGPEELEEWNDLKEIIDQIVLSDT-HDKLNWGLNANKKYTTRSLYRALT- 1396
Query: 388 MEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIP 447
+ V +W P K F L+DR+ + L ++ FC CG
Sbjct: 1397 --FRGIGDVNAKMWGCPCPMKHKHFLSLALRDRIQSAEQLKKKN--WEGSEFC-QLCGEL 1451
Query: 448 ETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFI--QFTNLAGMTRGSHDYLKI- 504
ET +H+ C VW CV + ++ +FI M G+ D +
Sbjct: 1452 ETTNHILFNCPMARFVW----------CVCRDTLRWNFIPRNSDEFFLMCDGAPDLCSVR 1501
Query: 505 ----IWLACVWAIWKERNNCVF-NNLASDPLSIVERV 536
+ A W +W RNN +F + L PL+I+ ++
Sbjct: 1502 ITLSLLAAVCWNLWITRNNMIFRDKLVYSPLAILFQI 1538
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 186 bits (473), Expect = 1e-45
Identities = 152/523 (29%), Positives = 243/523 (46%), Gaps = 41/523 (7%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSWLSEA 82
+SHL FADD+L + + I +L E VSG ++NF+KS + G + S ++
Sbjct: 460 VSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADI 519
Query: 83 AAVLNCKTGLIPFMYLGLP--IGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILL 140
+L YLGLP +GG + K+ + V DR+ +R++ W+ K+LS GG+ +++
Sbjct: 520 KLILGIHNLGGMGSYLGLPESLGGSKTKVFSF--VRDRLQSRINGWSAKFLSKGGKEVMI 577
Query: 141 KSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGL 200
KSV ++LP Y +S F+ P I S + S K +W SR + W+ WD +C S GGL
Sbjct: 578 KSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGL 637
Query: 201 GVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEGGRHS-SRWWRMICN 259
G R + +FN +LL K WRL+ + L+ +V K RY + +S S WR + +
Sbjct: 638 GFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMIS 697
Query: 260 VRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKF-QFSRLFDLAVNKECSVE 318
R LV K + + VG+G + W D W +P +F + ++ V+ V+
Sbjct: 698 ARS----LVYK----GLIKRVGSGASISVWNDPW---IPAQFPRPAKYGGSIVDPSLKVK 746
Query: 319 DMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVL-QDNIQDKWRWLLDPILGYT 377
++ + W LL +E E V L++ + + N++D W YT
Sbjct: 747 SLIDSRSN------FWNIDLL--KELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYT 798
Query: 378 VKGTYCFLTNMEGQVTSGVGFD-------VWHRRVPSKVSLFAWRLLQDRVATRTNLVRR 430
VK Y + T+ +G D +W + P K+ F W++L V NL +R
Sbjct: 799 VKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKR 858
Query: 431 YVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTN 490
+L D CV E+++H QC ++W L P +F + F +
Sbjct: 859 GIL--CDKGCVSCGASEESINHTLFQCHPARQIWAL-SQIPTAPGIFPSN--SIFTNLDH 913
Query: 491 LAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIV 533
L D W+ +W IWK RN VF N+ DP+ I+
Sbjct: 914 LFWRIPSGVDSAPYPWI--IWYIWKARNEKVFENVDKDPMEIL 954
>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
sativa (japonica cultivar-group)]
Length = 593
Score = 184 bits (468), Expect = 5e-45
Identities = 141/454 (31%), Positives = 213/454 (46%), Gaps = 38/454 (8%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAA 83
LS LQ+ADDT++ E + + ++ VL E++SGLK+NF+KS + + E A
Sbjct: 127 LSILQYADDTILFMEHDLEDAKNLKLVLSAFERLSGLKINFHKSELLCFGKAIEVEREYA 186
Query: 84 AVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSV 143
+ CKTG YLGLP+ + WK V +R RL SW K LS GGRL+L+ SV
Sbjct: 187 LLFGCKTGSYTLKYLGLPMHYRKLSNKDWKEVEERFQKRLGSWKGKLLSVGGRLVLINSV 246
Query: 144 LSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVR 203
LSSL +Y LSFF+ P GII ++ + FW E +K +W +C P GGLG++
Sbjct: 247 LSSLAMYMLSFFEVPKGIIKKLDYYRSRFFWQSDEHKKKYRLARWSVLCKPKECGGLGIQ 306
Query: 204 KLGEFNLSL---LGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKEGGRHSSRWWRMICNV 260
L N L L K W+ L+ K L + + M + R S +W + V
Sbjct: 307 NLEVQNKCLLRGLAKLVWQNLLRKKYLAKKTI---------MQVQKQRGDSHFWTGLMGV 357
Query: 261 RDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSVEDM 320
+D F + +G FW D WLG+ L+ + L++L NK V +
Sbjct: 358 KD--------TFSSFGSFKLQDGLQIRFWEDCWLGNQSLEKIYPSLYNLVRNKNVVVAKV 409
Query: 321 VRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGYTVKG 380
+ E +RR ++ + E V + +I L+ +D++ W +TV
Sbjct: 410 L----ERVPLNVSFRRAIIGDNLKAWHEIVANVVDINLRGQ-KDRFTWDASKNGTFTVNS 464
Query: 381 TYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFC 440
Y L M G V F +W R+P K+ +F W L + + T+ NL +R + + C
Sbjct: 465 MYKKL--MFGNVIPRQSF-IWKLRLPLKIKIFLWYLKEGVILTKDNLAKRR-WKGSLRCC 520
Query: 441 VGGCGIPETVDHLFIQC-------TSFGRVWYLV 467
C ET+ +LF C T + R+W L+
Sbjct: 521 F--CRSHETIQYLFFDCPMVIFRGTHWARLWSLL 552
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 181 bits (458), Expect = 7e-44
Identities = 159/536 (29%), Positives = 234/536 (42%), Gaps = 53/536 (9%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTS---WL 79
+ HL FADD+L + + V I+++ + V+G ++N++KS +T G + W+
Sbjct: 678 IHHLLFADDSLFMCKAVKEEVTVIKSIFKVYGDVTGQRINYDKSSITLGALVDEDCKVWI 737
Query: 80 SEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLIL 139
+ N + G YLGLP K+ + DR+ RLS W + LS GG+ L
Sbjct: 738 QAELGITN-EGGAST--YLGLPECFSGSKVQLLDYIKDRLKTRLSGWFARTLSMGGKETL 794
Query: 140 LKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGG 199
LK+ +L Y +S FK ++ S +W E RK WV + +CL GG
Sbjct: 795 LKAFALALLFYAMSCFKLTKTTCVNMTSAMSDFWWNALEHKRKTHWVSCEKMCLSKENGG 854
Query: 200 LGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKAR-YGEIGGMVKEGGRHSSRWWRMIC 258
LG R + FN +LL K WRLL N L+ R K+R Y E + E S WR I
Sbjct: 855 LGFRDIESFNQALLAKQAWRLLQFPNSLFARFFKSRYYDEEDFLDAELKATPSYAWRSIL 914
Query: 259 NVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGD----VPLKFQFSRLFDLAVNKE 314
+ GR LL+ R+ VGNG +T W D W+ D +PL+ FS DL V+
Sbjct: 915 H---GRDLLI-----KGFRKKVGNGSSTSVWMDPWIYDNDPRLPLQKHFSVNLDLRVHDL 966
Query: 315 CSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPIL 374
+VED R R RL E + N +V D D W WL
Sbjct: 967 INVEDRCRR-----------RDRLEELFYPADIEIIVKRNPVVSMD---DFWVWLHSKSG 1012
Query: 375 GYTVKGTY--CFLTN-----MEGQV---TSGVGFDVWHRRVPSKVSLFAWRLLQDRVATR 424
Y+VK Y F TN E +V T+G+ +W K+ LF WR+L +
Sbjct: 1013 EYSVKSGYWLAFQTNKPELIREARVQPSTNGLKEKIWSTLTSPKIKLFLWRILSSALPVA 1072
Query: 425 TNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCV---FQGSV 481
++RR + D C E+++H+ C+ +VW L G+P FQ S
Sbjct: 1073 YQIIRRGM--PIDPRCQVCGEEGESINHVLFTCSLARQVWAL----SGVPTSQFGFQNSS 1126
Query: 482 TQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVK 537
IQ+ + +K W +W +WK R+ F PL +E+++
Sbjct: 1127 IFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIR 1182
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 180 bits (457), Expect = 1e-43
Identities = 128/464 (27%), Positives = 211/464 (44%), Gaps = 45/464 (9%)
Query: 18 TRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTS 77
++G +LSH+ FADD ++ E S +R IR VL SG KV+ KS + S +
Sbjct: 195 SQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIF---FSEN 251
Query: 78 WLSEAAAVLNCKTGLIPFM----YLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSS 133
+ +++ ++G+ YLG+P+ + +L++++ RL+ W ++LS
Sbjct: 252 VSRDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSL 311
Query: 134 GGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCL 193
GR+ L K+VLSS+PV+ +S P + ++ + + WG RK + W VC
Sbjct: 312 AGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCK 371
Query: 194 PMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYG----EIGGMVKEGGRH 249
P S+GGLG+RK + N +LL K WRL+ D + LW R+++ Y G K
Sbjct: 372 PRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVC 431
Query: 250 SSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDL 309
SS W + +R+ +++ + V+G+GR FW D WL ++PL +L
Sbjct: 432 SSTWRSVALGMRE---VVI-----PGLSWVIGDGREILFWMDKWLTNIPLA-------EL 476
Query: 310 AVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNI------- 362
V + AGW +G RR + W+ + ++ N + LQ +
Sbjct: 477 LVQEP-------PAGW-KGMRARDLRRNGIGWDMATIAPYISSYNRLQLQSFVLDDITGA 528
Query: 363 QDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGF--DVWHRRVPSKVSLFAWRLLQDR 420
+D+ W + V TY FLT E F VW P +V LF W + Q
Sbjct: 529 RDRISWGESQDGRFKVSTTYSFLTRDEAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQA 588
Query: 421 VATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVW 464
+ T RR++ + C G E++ H+ C + +W
Sbjct: 589 IMTNQERHRRHL--STTTICQVCKGAKESIIHVLRDCPAMEGIW 630
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 178 bits (452), Expect = 4e-43
Identities = 153/537 (28%), Positives = 240/537 (44%), Gaps = 48/537 (8%)
Query: 1 MMKTSVLSNLFQPYGVGTRGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGL 60
+++ SV ++P V G +LSH+ FADD ++ E S +R IR VL + SG
Sbjct: 517 LIEASVGKREWKPIAVSCGGS-KLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQ 575
Query: 61 KVNFNKSMVT---GVNISTSWLSEAAAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLD 117
KV+ KS + V+ L + + C L YLG+PI + VL+
Sbjct: 576 KVSLEKSKIFFSHNVSREMEQLISEESGIGCTKEL--GKYLGMPILQKRMNKETFGEVLE 633
Query: 118 RISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGC 177
R+SARL+ W + LS GR+ L K+VLSS+PV+ +S P + +++ + WG
Sbjct: 634 RVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGST 693
Query: 178 EVSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYG 237
+K + W +C P ++GG+G+R + N +L+ K WRLL DK LW RV++ +Y
Sbjct: 694 MEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKY- 752
Query: 238 EIGGM-----VKEGGRHSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDN 292
++GG+ +K R SS W + +R+ VG W V G+G FW D
Sbjct: 753 KVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVG-W-------VPGDGCTIRFWLDR 804
Query: 293 WLGDVPLKFQFSRLFDLAVNKECSVEDM-VRAGWEEGGGGWVWRRRLLAWEEEGVRECVN 351
WL P L +L + E + V A + G GW L E R ++
Sbjct: 805 WLLQEP-------LVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLS 857
Query: 352 LLNNIVLQDNIQDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGF--DVWHRRVPSKV 409
++ + L + + W+ D +TV+ Y L G + F +W P +V
Sbjct: 858 VVVQVFLGNGDEISWKGTQDG--AFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERV 915
Query: 410 SLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCH 469
+F W + Q+ + T VRR++ + A C G ET+ H+ C + +W +
Sbjct: 916 RVFIWLVSQNVIMTNVERVRRHLSENA--ICSVCNGAEETILHVLRDCPAMEPIWRRLLP 973
Query: 470 WLGIPCVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLAC----VWAIWKERNNCVF 522
F S+ + FTN+ D +K IW +W WK R VF
Sbjct: 974 LRRHHEFFSQSLLEWL--FTNM--------DPVKGIWPTLFGMGIWWAWKWRCCDVF 1020
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 174 bits (440), Expect = 9e-42
Identities = 153/547 (27%), Positives = 243/547 (43%), Gaps = 53/547 (9%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVT-GVNISTSWLSEA 82
+ HL FADD+L I + + V ++++L +G +N KS +T G + T +E
Sbjct: 524 IHHLLFADDSLFICKANKDEVVVLQSILGAYGAATGQIINLAKSSITFGSKVETVKKAEI 583
Query: 83 AAVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKS 142
L YLGLP K+ + R+ ++LSSW +K LS GG+ I+LK+
Sbjct: 584 QTCLGIFKEGDASTYLGLPECFSGSKIEMLDYIKVRLKSKLSSWFSKSLSQGGKEIMLKA 643
Query: 143 VLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGV 202
V ++PV+ +S FK P +++ S +W + RKI W+ W+ +CLP GGLG
Sbjct: 644 VAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHWLSWEKLCLPKEHGGLGF 703
Query: 203 RKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMV-KEGGRHSSRWWRMICNVR 261
R +G FN +LL K WRLL + L+ R++K+RY +G + + G S WR I + R
Sbjct: 704 RDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPSFGWRSILHGR 763
Query: 262 D--GRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSVED 319
D RGL+ + VGNG++ W D WL D L+ + + + +N + V D
Sbjct: 764 DLLCRGLV----------KRVGNGKSIRVWIDYWLDDNGLRAPWIK--NPIINVDLLVSD 811
Query: 320 MV---RAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQDKWRWLLDPILGY 376
++ + W RL EE+ + V + ++ D W W + Y
Sbjct: 812 LIDYEKRDW-----------RLDKLEEQFFPDDVVKIRENRPVVSLDDFWIWKHNKSGDY 860
Query: 377 TVKGTYCFLTNME-GQVT---------SGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTN 426
+VK Y +N GQV + + VW + K+ +F W++L +
Sbjct: 861 SVKLGYWLASNQNLGQVAIEAMMQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDL 920
Query: 427 LVRRYVLQAADNFCVGGCGIP-ETVDHLFIQCTSFGRVWYLV---CHWLGIPCVFQGSVT 482
L Y D+ C CG E++ H+ C+ +VW + LG C GSV
Sbjct: 921 L--SYRGMKLDSRC-QTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFEC---GSVY 974
Query: 483 QHFIQF-TNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIVERVKLFSF 541
+ F N + W+ +W IWK RN F L + +V+
Sbjct: 975 ANLYHFLINRDNLKWPVELRRSFPWI--IWRIWKNRNLFFFEGKRFTVLETILKVRKDVE 1032
Query: 542 LWLSSNV 548
W ++ V
Sbjct: 1033 DWFAAQV 1039
>pir||H86435 protein F17F8.5 [imported] - Arabidopsis thaliana
gi|9755374|gb|AAF98181.1| F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 173 bits (439), Expect = 1e-41
Identities = 141/529 (26%), Positives = 226/529 (42%), Gaps = 54/529 (10%)
Query: 24 LSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAA 83
L+HL FADD +++ + ++ I V K SGL+++ KS + +S E A
Sbjct: 345 LTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIA 404
Query: 84 AVLNCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSV 143
A G +P YLGLP+ + P+L++I R+++W ++ S GR L+KSV
Sbjct: 405 AKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSV 464
Query: 144 LSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDSVCLPMSQGGLGVR 203
L S+ ++L+ F+ P I I+ + W G E+S A + WD VC P ++GGLG+R
Sbjct: 465 LWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLR 524
Query: 204 KLGEFNLSLLGKWCWRLLVDKNGLW------YRVLKARYGEIGGMVKEGGRHSSRWWRMI 257
L E N K WR++ + N LW Y + K + K+ S WR I
Sbjct: 525 NLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSL----KQSTSMGSWIWRKI 580
Query: 258 CNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWL--GDVPLKFQFSRLFDLAVNKEC 315
+RD V K F R VGNG + FWYD+W G + DL + +E
Sbjct: 581 LKIRD-----VAKSFS---RVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREA 632
Query: 316 SVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNI--------VLQDNIQDK-- 365
SV D W RR R +LLN I + + +D
Sbjct: 633 SVAD-------------AWTRR------SRRRHRTSLLNEIEEMMAYQRIHHSDAEDTVL 673
Query: 366 WRWLLDPIL-GYTVKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATR 424
WR D ++ + T+ + V+ G VW R K +L W + +R+ T
Sbjct: 674 WRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKG--VWFRHATPKYALCTWLAIHNRLPTG 731
Query: 425 TNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQH 484
+++ + CV +T++HLF C+ VW + GI + H
Sbjct: 732 DRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAK--GIWKTRYSTRWSH 789
Query: 485 FIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVFNNLASDPLSIV 533
+ + R + I+ A ++ +W+ERN + + P +++
Sbjct: 790 LLTHISTHFQDRVEGFLTRYIFQATIYHVWRERNGRRHDAAPNTPATVI 838
>gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1998
Score = 173 bits (438), Expect = 2e-41
Identities = 140/510 (27%), Positives = 232/510 (45%), Gaps = 50/510 (9%)
Query: 27 LQFADDTLIIGEKSWLNVRTIRAVLLLLEKVSGLKVNFNKSMVTGVNISTSWLSEAAAVL 86
+Q+ADDTLII E + +++++ + +GLKVN KSM+ +N+ L A
Sbjct: 1490 IQYADDTLIIAEGDTRQLLILKSIINTFSEATGLKVNLQKSMMLPINMDEERLDTLARTF 1549
Query: 87 NCKTGLIPFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKYLSSGGRLILLKSVLSS 146
C G PF YLGLP+G + + ++P++++ ARL S +LS GRL L +V ++
Sbjct: 1550 GCSKGSFPFTYLGLPLGITKPTIQDYQPLINKCEARLGSVAT-FLSEAGRLELTNAVFTA 1608
Query: 147 LPVYFLSFFKAPTGIISSIESIFKKKFWGGCEV-SRKIAWVKWDSVCLPMSQGGLGVRKL 205
LP +++ P +I I+ K W G + +RK W VC P ++GGLGV +
Sbjct: 1609 LPTFYMCTLAIPKSVIHKIDKFRKHCLWRGNGINARKPPKAAWKLVCKPKNEGGLGVIDI 1668
Query: 206 GEFNLSLLGKWCWRLLVDKNGLWYRVLKARY---GEIGGMVKEGGRHSSRWWRMICNVRD 262
+ N +LL K + K+ W +++ ++ G++ G +++G S WWR I + D
Sbjct: 1669 EKQNEALLMKNLDKFFNKKDTPWVQMIWDKHYAKGKLPGQIRKG----SFWWRDILKLLD 1724
Query: 263 GRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKFQFSRLFDLAVNKECSVEDMVR 322
+ + ++ ++ G G + FW D W G L+ + LF +K S +++
Sbjct: 1725 -------PYKEMSLIQMKG-GESIVFWQDKW-GMQKLRLEMPELFSFVQHKFLSAAEVL- 1774
Query: 323 AGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNI-----QDKWRWLLDPILGYT 377
G E+ R L E + L I DN+ QD+W++ G
Sbjct: 1775 -GQED-----FTRLLQLPISETAFHQLQQLTTRI---DNLERTQEQDQWKYK----WGNN 1821
Query: 378 VKGTYCFLTNMEGQVTSGVGFDVWHRRVPSKVSLFAWRLLQDRVATRTNLVRRYVLQAAD 437
T + M Q V +W K +F W L++DR++T N+++R +Q
Sbjct: 1822 FSATKAYSELMGHQQIHEVHKWIWKSFCQPKHKVFFWLLIKDRLST-CNILKRKNMQLQS 1880
Query: 438 NFCVGGC--GIPETVDHLFIQCTSFGRVWYLVCHWLGIPCVFQGSVTQHFIQFTNLAGMT 495
CV C ET HLF+ C + W L+ + F +T HF N
Sbjct: 1881 YNCV-LCLQNSEETTSHLFLHCAYARQCWQLLDMDIPPNSDFP-EITDHFKHGFN----- 1933
Query: 496 RGSHDYLKIIWLACVWAIWKERNNCVFNNL 525
+ + + + WAIW RNN +F +
Sbjct: 1934 ---NQFFMVTTILLCWAIWSTRNNLIFRGI 1960
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 171 bits (433), Expect = 6e-41
Identities = 128/418 (30%), Positives = 199/418 (46%), Gaps = 34/418 (8%)
Query: 115 VLDRISARLSSWNNKYLSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFW 174
VL+R S+RL+ W ++LS GRL L K+VL+SLPV+ ++ P + ++ + + W
Sbjct: 16 VLERASSRLAGWRGRFLSLAGRLTLTKAVLASLPVHTMTTIVLPKSTLDKLDQLSRSFLW 75
Query: 175 GGCEVSRKIAWVKWDSVCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKA 234
G RK+ + WD VCLP ++GGLG+R NL+LL K WRL+ D+ LW RVL++
Sbjct: 76 GSTPEKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRS 135
Query: 235 RYGEIGGMVK----EGGRHSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWY 290
+Y IGG+ R++S WR +++ G +V + VVG+G++ FW
Sbjct: 136 KY-RIGGLRDTTWINTKRNASSTWR---SIKSGLREVV----IPGMNWVVGDGKDICFWD 187
Query: 291 DNWLGDVPLKFQFSRLFDL-AVNKECSVEDM-VRAGWEEGGGGWVW-RRRLLAWEEEGVR 347
D WL + P++ DL AV + + +R W EG G W +++ + EGVR
Sbjct: 188 DKWLVEDPIR-------DLAAVELPADFQGIKIRELWHEGSG---WDLAKIIPYVSEGVR 237
Query: 348 ECVNLLNNIV-LQDNIQDKWRWLLDPILGYTVKGTYCFLTNMEGQVTSGVGF--DVWHRR 404
+ LL+ +V D+ W +TVK Y FL E Q + F VW
Sbjct: 238 --LRLLSMVVDTVTGSNDRTSWGATANGQFTVKSAYSFLLQSETQAQNMRQFFDRVWRVT 295
Query: 405 VPSKVSLFAWRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVW 464
+V +F W ++ + T RR++ +A C G ET+ H+ C S +W
Sbjct: 296 TTERVRVFIWLVVHQVIMTDVERRRRHL--SASGVCQVCKGGDETILHVLRDCPSIAGIW 353
Query: 465 YLVCHWLGIPCVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVF 522
+ I F ++ Q NL+ +T ++ VW WK R VF
Sbjct: 354 GRLVPRGKITAFFASNILDWVYQ--NLSDVTEIRGCPWATLFAIVVWWAWKWRCGNVF 409
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 171 bits (432), Expect = 8e-41
Identities = 145/535 (27%), Positives = 241/535 (44%), Gaps = 63/535 (11%)
Query: 19 RGEVRLSHLQFADDTLIIGEKSWLNVRTIRAVLLLLEK---VSGLKVNFNKSMVT-GVNI 74
RG +SHL FADD++ + +N + ++ ++E+ SG +VN+ KS + G +I
Sbjct: 671 RGAPPISHLLFADDSMFYCK---VNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHI 727
Query: 75 STSWLSEAAAVLNCKTGLI----PFMYLGLPIGGDERKLCFWKPVLDRISARLSSWNNKY 130
S E ++ K G+ +YLGLP K+ + DR+ ++ W + +
Sbjct: 728 S----EERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNF 783
Query: 131 LSSGGRLILLKSVLSSLPVYFLSFFKAPTGIISSIESIFKKKFWGGCEVSRKIAWVKWDS 190
LS GG+ ILLK+V +LP Y +S FK P I IES+ + +W + R + W W
Sbjct: 784 LSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCH 843
Query: 191 VCLPMSQGGLGVRKLGEFNLSLLGKWCWRLLVDKNGLWYRVLKARYGEIGGMVKE--GGR 248
+ P + GGLG +++ FN++LLGK WR++ +K+ L +V K+RY + G R
Sbjct: 844 LSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSR 903
Query: 249 HSSRWWRMICNVRDGRGLLVGKWFDDNIRRVVGNGRNTFFWYDNWLGDVPLKF-----QF 303
S W ++ + + L+ IR V+GNG W D W+G P K +
Sbjct: 904 PSFAW----KSIYEAQVLI-----KQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRS 954
Query: 304 SRLFDLAVNKECSVEDMVRAGWEEGGGGWVWRRRLLAWEEEGVRECVNLLNNIVLQDNIQ 363
+ A N V+D++ G W W L + + N+L +
Sbjct: 955 HLVSQYAANSIHVVKDLLL----PDGRDWNWNLVSLLFPDNTQE---NILALRPGGKETR 1007
Query: 364 DKWRWLLDPILGYTVKGTYCFLTNMEGQVTS----------GVGFDVWHRRVPSKVSLFA 413
D++ W Y+VK Y +T + Q + + +W VP K+ F
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFL 1067
Query: 414 WRLLQDRVATRTNLVRRYVLQAADNFCVGGCGIPETVDHLFIQCTSFGRVWYLVCHWLGI 473
WR + + ++ +NL R++ A + CV ETV+HL +C F R+ + +
Sbjct: 1068 WRCVNNCLSVASNLAYRHL--AREKSCVRCPSHGETVNHLLFKC-PFARLTWAISPLPAP 1124
Query: 474 P------CVFQGSVTQHFIQFTNLAGMTRGSHDYLKIIWLACVWAIWKERNNCVF 522
P +F+ H + + + H L I W+ +W +WK RN+ VF
Sbjct: 1125 PGGEWAESLFR---NMHHVLSVHKSQPEESDHHAL-IPWI--LWRLWKNRNDLVF 1173
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.326 0.142 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,062,796,589
Number of Sequences: 2540612
Number of extensions: 47006290
Number of successful extensions: 142366
Number of sequences better than 10.0: 444
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 141077
Number of HSP's gapped (non-prelim): 808
length of query: 569
length of database: 863,360,394
effective HSP length: 133
effective length of query: 436
effective length of database: 525,458,998
effective search space: 229100123128
effective search space used: 229100123128
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)
Medicago: description of AC148755.5