BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148652.2 - phase: 0 /pseudo
(1145 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 1767 0.0
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 1079 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 906 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 744 0.0
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 744 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 682 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 681 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 680 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 678 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 677 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 676 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 675 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 675 0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 674 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 673 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 673 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 671 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 665 0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva... 664 0.0
dbj|BAA84458.1| GAG-POL precursor [Oryza sativa (japonica cultiv... 662 0.0
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 1767 bits (4577), Expect = 0.0
Identities = 824/1148 (71%), Positives = 994/1148 (85%), Gaps = 10/1148 (0%)
Query: 1 NFEFPVYEVEDEEGDD--IPYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAA 58
+F+ P+Y+ E+E +D +P E+ RLL+QE + I+PHQEE+E++NLGTE+ REIK+GAA
Sbjct: 1121 DFDNPIYQAEEESEEDCELPAELVRLLKQEERVIQPHQEELEVVNLGTEDATREIKIGAA 1180
Query: 59 LEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMA 118
LE+ VKR++ ++LREY +IFAWSY+DMPGLD IV HR+P + P V+QKLRRT PDMA
Sbjct: 1181 LEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMA 1240
Query: 119 LKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPH 178
KIK EVQKQ DAGFL YP W+ANIVPVPKKDGKVRMCVD+RDL +ASPKD+FPLPH
Sbjct: 1241 TKIKEEVQKQWDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPH 1300
Query: 179 IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGAT 238
IDVLVDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITP GTFCYKVMPFGL NAGAT
Sbjct: 1301 IDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCYKVMPFGLKNAGAT 1360
Query: 239 Y*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 298
Y R MTTLFHDM+HKE+EVYVDDMI KS+ EE+H+ L K+F+RLRK+KLRLNPNKCTFG
Sbjct: 1361 YQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFG 1420
Query: 299 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCG 358
VRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC
Sbjct: 1421 VRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCE 1480
Query: 359 PIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLG 418
PIFKLLRKNQ I WND+CQ AFD IK YL +PPIL+PPV GRPLIMYLSV + S+GCVLG
Sbjct: 1481 PIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILIPPVPGRPLIMYLSVTENSMGCVLG 1540
Query: 419 QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQ 478
+ DE+G+KEHAIYYLSKKFTDCETRY++LEKTCCAL WAA+RLR Y++NHTT LIS+MD
Sbjct: 1541 RHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDP 1600
Query: 479 IKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPD 538
+KYIFEKPA+T ++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPD
Sbjct: 1601 VKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPD 1660
Query: 539 EDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARIL 598
EDIMYLK KDC+EPL+ EGPDPD KW L+FDG VN G G+GAV+++P+G H+PF+AR+
Sbjct: 1661 EDIMYLKMKDCKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLT 1720
Query: 599 FECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYAR 658
F+ TNN AEYEACI GIEEAID+RIK L+I+GDSALV+NQ+ G+W T+ LIPYRDY R
Sbjct: 1721 FDVTNNEAEYEACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTR 1780
Query: 659 RLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDM 718
R+LT+F KV+L+H+PRDENQMADAL T+SSM +VN WN VP + V RLERP++VF E +
Sbjct: 1781 RILTFFKKVKLYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESV 1840
Query: 719 INRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLD-GDILYKRNYD 777
V+D++PWYYD K FL ++EYP GAS DKKTLRRLAG F L+ D+LYKRN+D
Sbjct: 1841 -------VIDEKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFD 1893
Query: 778 MVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHK 837
MVLLRC+D EA+ LM +VH+G+FGTHA GH M++KLLRAGYYWMTME DC+++ARKCHK
Sbjct: 1894 MVLLRCMDRPEADMLMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHK 1953
Query: 838 CQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAA 897
CQIYAD++HVPP LNV++SPWPF+MWGIDMIG+IEP ASNGHRFILVAIDY+TKWVEAA
Sbjct: 1954 CQIYADRVHVPPSPLNVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAA 2013
Query: 898 SYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRP 957
SYAN+TKQVV +FI+ IICRYGVP +IITDNG+NLNN +++ LC++FKIEHH SSPYRP
Sbjct: 2014 SYANITKQVVTRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRP 2073
Query: 958 QMNGAVEAANKNIQKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 1017
+MNGAVEAANKNI+KIV+KMV TYKDWHEMLP+ALHGYRT+VR+STGATP+SLVYGMEAV
Sbjct: 2074 KMNGAVEAANKNIKKIVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAV 2133
Query: 1018 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKV 1077
LP+EVEIPSLRV+++ KL EAEW ++R+++L+L+EE+R+ + GQ YQ RMK AFD+KV
Sbjct: 2134 LPVEVEIPSLRVLLDVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKV 2193
Query: 1078 RPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 1137
RPR ++ G+LVLKR + D RGKWTPNYEGPYVVKK FSGGAL+LT MDG + P+PVN
Sbjct: 2194 RPRSYQIGDLVLKRILPPGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVN 2253
Query: 1138 ADIVKKYF 1145
+D+VKKYF
Sbjct: 2254 SDVVKKYF 2261
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 1079 bits (2790), Expect = 0.0
Identities = 509/691 (73%), Positives = 599/691 (86%), Gaps = 2/691 (0%)
Query: 1 NFEFPVYEVEDEEGDD--IPYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAA 58
+F P+Y+ E+E +D +P E+ RLL QE + I+PHQEE+E++NLGTE+ KREIK+GAA
Sbjct: 1123 DFGNPIYQAEEESEEDCELPAELVRLLRQEERVIQPHQEELEVVNLGTEDAKREIKIGAA 1182
Query: 59 LEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMA 118
LE+ VKR++ ++LREY +IFAWSY+DMPGLD IV HR+P + P V+QKLRRT PDMA
Sbjct: 1183 LEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMA 1242
Query: 119 LKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPH 178
KIK EVQKQ DAGFL YP WVANIVPVPKKDGKVRMCVD+RDL +ASPKD+FPLPH
Sbjct: 1243 TKIKEEVQKQWDAGFLAVTSYPPWVANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPH 1302
Query: 179 IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGAT 238
IDVLVDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITP GTF YKVMPFGL NAGAT
Sbjct: 1303 IDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFYYKVMPFGLKNAGAT 1362
Query: 239 Y*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 298
Y R MTTLFHDM+HKE+EVYVDDMI KS+ EE+H+ L K+F+RLRK+KLRLNPNKCTFG
Sbjct: 1363 YQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFG 1422
Query: 299 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCG 358
VRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC
Sbjct: 1423 VRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCE 1482
Query: 359 PIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLG 418
PIFKLLRKNQ I WND+CQ AFD IK YL +PPIL PPV GRPLIMYLSV + S+GCVLG
Sbjct: 1483 PIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILTPPVPGRPLIMYLSVTENSMGCVLG 1542
Query: 419 QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQ 478
Q DE+G+KEHAIYYLSKKFTDCETRY++LEKTCCAL WAA+RLR Y++NHTT LIS+MD
Sbjct: 1543 QHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDP 1602
Query: 479 IKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPD 538
+KYIFEKPA+T ++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPD
Sbjct: 1603 VKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPD 1662
Query: 539 EDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARIL 598
EDIMYLK KDCEEPL+ EGPDPD KW L+FDG VN G G+GAV+++P+G HIPF+AR+
Sbjct: 1663 EDIMYLKVKDCEEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHIPFSARLT 1722
Query: 599 FECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYAR 658
F+ TNN AEYEACI GIEEAID+RIK L+IYGDSALV+NQ+ G+W T+ LIPYRDY R
Sbjct: 1723 FDVTNNEAEYEACIMGIEEAIDLRIKTLDIYGDSALVVNQVNGDWNTNQPHLIPYRDYTR 1782
Query: 659 RLLTYFTKVELHHIPRDENQMADALGTISSM 689
R+LT+F KV L+H+PRDENQMADAL T+SSM
Sbjct: 1783 RILTFFKKVRLYHVPRDENQMADALATLSSM 1813
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 906 bits (2341), Expect = 0.0
Identities = 483/1158 (41%), Positives = 693/1158 (59%), Gaps = 43/1158 (3%)
Query: 2 FEFPVYEVEDEEGDDIPYEITRLLEQERKAIEPHQEEIELINLGTEENKREIKVGAALEE 61
FE VE+E ++ L+Q +P +E+ +NLGTE++ R I V L E
Sbjct: 1747 FEVAAVGVEEE------LDVAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTE 1800
Query: 62 GVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKI 121
+ L E+ D FAW+Y++MPGLD ++ H++ P++ PV+Q RR P+ ++
Sbjct: 1801 EEREDYRSFLMEFRDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQV 1860
Query: 122 KSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDV 181
+EV + I+ GF+ ++YP W+ANIVPV KK+G+VR+CVDFRDL +A PKD+FPLP ++
Sbjct: 1861 IAEVDRLINVGFIKEIQYPRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEM 1920
Query: 182 LVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*R 241
+VD+T SGYNQIKM D T+F TP G F Y VMPFGL NAGATY R
Sbjct: 1921 VVDSTTG------YGALSGYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQR 1974
Query: 242 GMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRS 301
M + D+IH VE YVDDM+VK+KD E H E L +FERLR+++L++NP KC F V+S
Sbjct: 1975 AMQFVLDDLIHHSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQS 2034
Query: 302 GKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIF 361
G LGF++ +GIE++P K++AI MP PQ K +R G+L YI RFIS+++ P
Sbjct: 2035 GVFLGFVIRHRGIEIEPKKIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFS 2094
Query: 362 KLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLGQQD 421
KL++K P VW++ECQ FDSIK YLL PP+L PV+GRPLI+Y++ S+G +L Q +
Sbjct: 2095 KLMKKGTPFVWDEECQNGFDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHN 2154
Query: 422 ETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKY 481
+ G KE A YYLS+ E Y+ +EK C AL++A K+LRHY++ H LI+R D I+Y
Sbjct: 2155 DEG-KEVACYYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRY 2213
Query: 482 IFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDI 541
+ +P +T ++ +W +L+ EYDI F QKAIKG LA+ LA P+ D P+ + PDE+I
Sbjct: 2214 VLSQPVLTGRLGKWALLMMEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEI 2273
Query: 542 MYLKSKDCEEPLIGEGPDPDSKWGLVFDG----DVNAYG-----KGIGAVIVSPQGHHIP 592
+ ++ +W L FDG D+N G G G V +PQG I
Sbjct: 2274 FTAELQE--------------QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIY 2319
Query: 593 FTARIL-FECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLI 651
+ +L EC+NN AEYEA IFG+ A+ M ++ L +GDS L+I QI +E +L+
Sbjct: 2320 HSFSLLKEECSNNEAEYEALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELV 2379
Query: 652 PYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSH 711
PY ARRL+ F +E+ H+PR +N ADAL +++ N I+ +R P+
Sbjct: 2380 PYYTVARRLMDKFEHIEVIHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAV 2439
Query: 712 VFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDIL 771
+ I + +N N ++ W + P +++ L+R ++ +L
Sbjct: 2440 LELIPEEVNIIITNSAEEEDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVL 2497
Query: 772 YKRNYDM-VLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQ 830
YKR+Y VLLRCVD EA +++ +VH G G H +G M + GYYW + DC +
Sbjct: 2498 YKRSYGQEVLLRCVDRSEANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLK 2557
Query: 831 HARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYY 890
A+ CH CQI+ + H PP L+ WPF WGID+IG I P +S GHRFIL A DY+
Sbjct: 2558 TAKTCHGCQIHDNFKHQPPAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYF 2617
Query: 891 TKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 950
+KW EA V V F+ +II R+GVP +I +DN + + E++KI+ +
Sbjct: 2618 SKWAEAVPLREVKSSDVINFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWN 2677
Query: 951 ISSPYRPQMNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFS 1009
S+ Y PQ NG EA NK + KI++K V + +DWH+ L AL YR TVR+ T ATP+S
Sbjct: 2678 YSTGYYPQANGMAEAFNKTLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYS 2737
Query: 1010 LVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARM 1069
LVYG EAVLPLE+++PSLRV + +L++ E + R+ +L+ VEE+R+ A+ + Y+ M
Sbjct: 2738 LVYGNEAVLPLEIQLPSLRVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNM 2797
Query: 1070 KTAFDKKVRPREFKGGE--LVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHM 1127
A+DK V+ R F+ GE LVL+R I +GK+ P +EGPYV+++A+ GGA L
Sbjct: 2798 VRAYDKLVKQRVFRKGELVLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDH 2857
Query: 1128 DGVELPNPVNADIVKKYF 1145
G + P+N +KKYF
Sbjct: 2858 QGSQPMPPINGRFLKKYF 2875
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 744 bits (1922), Expect = 0.0
Identities = 428/1118 (38%), Positives = 635/1118 (56%), Gaps = 51/1118 (4%)
Query: 40 ELINLGTEENKREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPT 99
E++N+ + R + VGA + ++ ++ LL+ FAWS EDM G+DP I H +
Sbjct: 759 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 818
Query: 100 KPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 159
P + PV+QK R+ P+ A + EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 819 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 878
Query: 160 VDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 219
VD+ DL KA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 879 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 938
Query: 220 *GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKM 279
GT+CYKVM FGL NAGATY R + + D I + VEVY+DDM+VKS E HVE+L+K
Sbjct: 939 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 998
Query: 280 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 339
F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+ ++V+
Sbjct: 999 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058
Query: 340 LGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEG 399
GR+ ++RFIS T C P + LL++ W+ + + AF+ +K+YL PPILV P G
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1118
Query: 400 RPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAK 459
L +Y++V D +V VL ++D ++ I+Y SK + ETRY ++EK A+V +A+
Sbjct: 1119 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1176
Query: 460 RLRHYLVNHTTWLISRMDQ-IKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILA 518
+LR Y +HT +++ DQ ++ P+ + ++ +W + LSEYDI F+ + A+K +LA
Sbjct: 1177 KLRPYFQSHTIAVLT--DQPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLA 1234
Query: 519 DHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKG 578
D L PL + E + G + +W L DG +A G G
Sbjct: 1235 DFLIELPL--------------------QSAERAVSG---NRGEEWSLYVDGSSSARGSG 1271
Query: 579 IGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQ 638
IG +VSP + + R+ F TNN+AEYE I G+ A M+I ++ + DS L+ Q
Sbjct: 1272 IGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQ 1331
Query: 639 IKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDV 698
+ GE+E + K+ Y + + F +L IPR +N ADAL ++ + +D+
Sbjct: 1332 LSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDL 1387
Query: 699 -PIIKVQRLERPS----HVFTIEDMINRADG-NVVDDRPWYYDTKQFLLSREYPPGASNK 752
II V+ +++PS I + I ++ + D W + + +L P
Sbjct: 1388 RRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP-----S 1442
Query: 753 DKKTLRRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHT 809
DK T RRL A ++ L + L K + +L C+ E ++M + H+G G H+ G
Sbjct: 1443 DKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRA 1502
Query: 810 MSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMI 869
++ KL + G+YW TM DC KC +CQ +A IH P L +P+PF W +D++
Sbjct: 1503 LALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIV 1562
Query: 870 GRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDN 929
G + AS RFILV DY+TKWVEA SYA + V F+ IICR+G+P +IITDN
Sbjct: 1563 GPM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDN 1620
Query: 930 GTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVTTYKD-WHEML 988
G+ + + C +KI + S+P PQ NG EA NK I ++K + K W + L
Sbjct: 1621 GSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADEL 1680
Query: 989 PYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQL 1048
L YRTT RS+T TPF+ YGMEA+ P EV SLR M K E + D+L
Sbjct: 1681 DGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRL 1739
Query: 1049 NLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPD-PRGKWTPNY 1107
+ +EE R A+ R Q+YQ +++KV R F G+LVL++ + GK N+
Sbjct: 1740 DDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANW 1799
Query: 1108 EGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 1145
EG Y V K G L M G +P N+ +K+Y+
Sbjct: 1800 EGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 744 bits (1921), Expect = 0.0
Identities = 418/1109 (37%), Positives = 628/1109 (55%), Gaps = 66/1109 (5%)
Query: 44 LGTEENKREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEY 103
L + ++ EI + A+ +G + + +LL+E+ D F W Y +MPG IVEHR+P KP
Sbjct: 524 LMSADDLEEIDISPAIGQG-RHLLIELLKEFRDCFTWEYYEMPGHSRSIVEHRLPLKPGV 582
Query: 104 PPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFR 163
P +Q RR DM +K+E+++ DAGF+ Y EWV++IVPV KK+GKVR+C+DFR
Sbjct: 583 RPHQQLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFR 642
Query: 164 DLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*--G 221
L KA+PKD +P+ D LVD + K+ SFMDG +GYNQI M+ ED KT+F P G
Sbjct: 643 YLNKATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIFMAEEDIHKTTFRCPGAIG 702
Query: 222 TFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFE 281
F + V+ F L +AGATY R M ++HD+I VEVY+DD++VKSK+ E H+ L K+FE
Sbjct: 703 LFEWVVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFE 762
Query: 282 RLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLG 341
R RKY L++NP KC FGV +G+ LGF+V ++GIEV + AI+++ P+ + +++ +G
Sbjct: 763 RTRKYGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINAIKKIKPPEDKTELQEMIG 822
Query: 342 RLNYISRFISHMTATCGPIFKLLR--KNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEG 399
++N++ RFIS ++ P LLR +Q W E Q A D+IK YL PP+L+PP +G
Sbjct: 823 KINFVRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALDNIKEYLSSPPVLIPPQKG 882
Query: 400 RPLIMYLSVFDESVGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAK 459
P +YLS D+S+ VL Q+ E +KE ++YLS++ + ETRY+ +EK C L ++
Sbjct: 883 IPFRLYLSAGDKSISSVLIQELE--RKERVVFYLSRRLLNAETRYSPVEKLCLCLYFSCT 940
Query: 460 RLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILAD 519
RLRHYL+++ +I + D +KY+ P + +I +W L+E+D+ +++ KAIKG +A+
Sbjct: 941 RLRHYLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEFDLRYESPKAIKGQAIAN 1000
Query: 520 HLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGI 579
+ D+ D+ I G W L FDG V +G GI
Sbjct: 1001 FIV------------DYRDDSI---------------GSVEVVPWTLFFDGSVCTHGCGI 1033
Query: 580 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQI 639
G VI+SP+G F I TNN AEYEA + G++ ++ + I GDS LVI+Q+
Sbjct: 1034 GLVIISPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDSLLVISQL 1093
Query: 640 KGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVP 699
GE+E + LI Y + + L+ F V L H+ R++N A+ L +S ++
Sbjct: 1094 AGEYECKNDTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGASGYK-------- 1145
Query: 700 IIKVQRLERPSHVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRR 759
+ ++ ++ V T +D W Y Q+L S + LR
Sbjct: 1146 -LMIKHVQIEVAVITADD--------------WRYYVYQYLQD------PSQSASRKLRY 1184
Query: 760 LAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGY 819
A +++L D LY R D VLL+C+ +A+ + +VH+G GTH + H M L AGY
Sbjct: 1185 KALKYILLDDELYYRTIDGVLLKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGY 1244
Query: 820 YWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNG 879
+W TM DC+++ + C CQ + P A+N I PWPF WGIDMIG I P +S G
Sbjct: 1245 FWPTMLEDCFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKG 1304
Query: 880 HRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQ 939
H+FILVA DY+TKWVEA V +F++ +II R G+P I TD G+ ++
Sbjct: 1305 HKFILVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFI 1364
Query: 940 ALCEEFKIEHHISSPYRPQMNGAVEAANKNIQKIVQKMVTTY-KDWHEMLPYALHGYRTT 998
+ I+ SSPY Q NG EA+NK++ K++++ ++ Y + WH L AL YR
Sbjct: 1365 QFADSMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMA 1424
Query: 999 VRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDA 1058
S P+ LVY +A+LP EV I S R ++ L+ E+ D+ + + R+ A
Sbjct: 1425 CHGSIQVPPYKLVYRHKAILPWEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRA 1484
Query: 1059 MARGQSYQARMKTAFDKKVRPREFKGGELVLK--RRISQQPDPRGKWTPNYEGPYVVKKA 1116
+A+ + R+ ++KKV P++F GEL+ K I + GKW+PN+EGP+ + K
Sbjct: 1485 LAKVIKDKERVTRHYNKKVVPKDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKV 1544
Query: 1117 FSGGALILTHMDGVELPNPVNADIVKKYF 1145
S GA +L +DG +N +KKY+
Sbjct: 1545 VSKGAYMLQGLDGEVYDRALNGKYLKKYY 1573
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 682 bits (1759), Expect = 0.0
Identities = 389/1097 (35%), Positives = 615/1097 (55%), Gaps = 56/1097 (5%)
Query: 53 IKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRR 112
I +G LE+ ++ +I ++++E +FAWS +++ G+D ++EH + K Y P +QKLRR
Sbjct: 956 ILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRR 1015
Query: 113 THPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKD 172
D K E++K + A + V +PEW+AN V V K +GK RMC+DF DL KA PKD
Sbjct: 1016 MSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKD 1075
Query: 173 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGL 232
+FPLP ID LVD TA ++ SF+D +SGY+Q+ M ED EKTSFITP GT+C+ MPFGL
Sbjct: 1076 DFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGL 1135
Query: 233 INAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNP 292
NAGAT+ R + + + + VE Y+DD++VKSK H + L + FE LRK ++LNP
Sbjct: 1136 KNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNP 1195
Query: 293 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 352
KC FGVR+GKLLGF+VS++GIE +PDK+ AI +M P+ ++V+ GR+ +SRF+S
Sbjct: 1196 EKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSK 1255
Query: 353 MTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDES 412
P FK LR W ECQ AFD +K YL E P L P +G+PL+MY++ +
Sbjct: 1256 SAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPAT 1315
Query: 413 VGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWL 472
V VL Q++E ++ +Y++S+ +TRY+ +EK A+V A+++LRHY ++H +
Sbjct: 1316 VSAVLVQEEE--NRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITI 1373
Query: 473 ISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPI 532
S I + V +IA+W M L +D+ + ++ AIK +LAD +A ++ P
Sbjct: 1374 PSAY-PIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVA-----EWTPN 1427
Query: 533 KFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIP 592
+ + + ++ ++P W + DG NA G G AV+ +P +
Sbjct: 1428 EVE---------QQEEVKKP-----------WIVFSDGACNAAGAGAAAVVKTPMKQTLK 1467
Query: 593 FTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIP 652
++ +++F TNN AEYE + + +A + + L + DS LV +E +
Sbjct: 1468 YSVQLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAK 1527
Query: 653 YRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFR--VNHWNDVPIIKVQRLERPS 710
Y + AR +F + + I R+EN AD L ++ + N + D+ + +PS
Sbjct: 1528 YLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENSFFDI-------ITQPS 1580
Query: 711 HVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFLLDGDI 770
+ I R + W ++L+S + P ++ K ++ ++ ++ +
Sbjct: 1581 YEKKEVACIQR-------EGDWREPILKYLVSAQLP--EKEEEAKRIQLMSKKYKVVEGQ 1631
Query: 771 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQ 830
LYK LL+CV E +++ ++H+G G H +++ K++R G YW T+ D +
Sbjct: 1632 LYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEK 1691
Query: 831 HARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYY 890
+ + C CQ + PP L I WPF WGID++G + P+A RF++VAI+Y+
Sbjct: 1692 YIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPL-PRAKGDLRFVIVAIEYF 1750
Query: 891 TKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 950
++W+EA + A +T V KF+ NIICR+G+P +I+ DNG + Q +C+ ++ +
Sbjct: 1751 SRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQIN 1810
Query: 951 ISSPYRPQMNGAVEAANKNIQKIVQKMV--TTYKDWHEMLPYALHGYRTTVRSSTGATPF 1008
+S PQ NG VE AN I + ++K + + W E L L RTTV STG TPF
Sbjct: 1811 FASVGHPQTNGVVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPF 1870
Query: 1009 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQAR 1068
LVYG EA+ P EV S R+I + K E R L +++E R++A+ + SY
Sbjct: 1871 RLVYGDEAMTPSEVGAHSPRMIFDQKDEE-----GREITLEMLDEIRVEALEKMASYTEG 1925
Query: 1069 MKTAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMD 1128
K+ +++KV+ R + G+LVLK+ +++ GK +EGP++VKK GA L ++D
Sbjct: 1926 TKSYYNQKVKTRPIEEGDLVLKKVLNEV--AVGKLESKWEGPFIVKKKTETGAFKLAYLD 1983
Query: 1129 GVELPNPVNADIVKKYF 1145
G EL + NA +KK++
Sbjct: 1984 GEELKHTWNAVSLKKFY 2000
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 681 bits (1757), Expect = 0.0
Identities = 404/1110 (36%), Positives = 597/1110 (53%), Gaps = 62/1110 (5%)
Query: 50 KREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQK 109
+ EI++ A E + L+ DIFAW DMPG+ +++EH + K + P++Q+
Sbjct: 924 REEIRLAATTESA----LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979
Query: 110 LRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKAS 169
LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DL K+
Sbjct: 980 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039
Query: 170 PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMP 229
PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP G +CY MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099
Query: 230 FGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLR 289
FGL NAGATY R + F I + VE YVDD++VK+K ++ + L + F +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159
Query: 290 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRF 349
LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219
Query: 350 ISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVF 409
+S + P FKLL+K W E Q AF+ K L +PP+L P PL++Y+S
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279
Query: 410 DESVGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYL 465
+ V VL +++E G K + IY++S+ D + RY ++K ++ ++L HY
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYF 1339
Query: 466 VNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQP 525
H+ +++ + + A +IA+W + L DI FK + +IK LAD +A
Sbjct: 1340 QGHSVTVVTSFPLGDVLHNREA-NGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395
Query: 526 LDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVS 585
++ + D P E I + W + FDG G G G V++S
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433
Query: 586 PQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWET 645
P G + + I F ++N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493
Query: 646 HHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQR 705
++ YR R+L F +EL H+ R N+ AD L S R +DV V+
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-RETAPSDV---FVEH 1549
Query: 706 LERPS--HVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGR 763
L P+ H T +D R V D W +FL S+E P +DK R++ R
Sbjct: 1550 LYTPTVPHKDTTQDADTRNIAMVEAD--WREPFIRFLTSQELP-----QDKDEAERISRR 1602
Query: 764 ---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYY 820
++L LYK++ +L RCV E QL+ D+H G G HA T+ K R G++
Sbjct: 1603 SKLYVLHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFF 1662
Query: 821 WMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGH 880
W T D + R C CQ +A +IH+P L I WPF++WG+DM+G + KA G+
Sbjct: 1663 WPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGY 1721
Query: 881 RFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQA 940
+ VAID ++KW+EA +T F NI+ R+GVP++IITDNGT V +
Sbjct: 1722 THLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKD 1780
Query: 941 LCEEFKIEHHISSPYRPQMNGAVEAANKNI-----QKIVQKMVTTYKDWHEMLPYALHGY 995
CE+F I+ +S P NG VE AN I ++ ++ W + LP L
Sbjct: 1781 FCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSL 1840
Query: 996 RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKR 1055
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE R
Sbjct: 1841 RTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVR 1897
Query: 1056 MDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKK 1115
A+ + Y ++ ++ VR R F G+LVL++ Q R K +P +EGP+++ +
Sbjct: 1898 EAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISE 1955
Query: 1116 AFSGGALILTHMDGVELPNPVNADIVKKYF 1145
G+ L DG + N N + +++++
Sbjct: 1956 VTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 680 bits (1754), Expect = 0.0
Identities = 404/1112 (36%), Positives = 601/1112 (53%), Gaps = 66/1112 (5%)
Query: 50 KREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQK 109
+ EI++ A E + L+ DIFAW DMPG+ +++EH + K + P++Q+
Sbjct: 924 REEIRLAATTESA----LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979
Query: 110 LRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKAS 169
LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DL K+
Sbjct: 980 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039
Query: 170 PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMP 229
PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP G +CY MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099
Query: 230 FGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLR 289
FGL NAGATY R + F I + VE YVDD++VK+K ++ + L + F +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159
Query: 290 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRF 349
LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219
Query: 350 ISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVF 409
+S + P FKLL+K W E Q AF+ K L +PP+L P PL++Y+S
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279
Query: 410 DESVGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYL 465
+ V VL +++E G K + IY++S+ D +TRY ++K ++ ++L HY
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1339
Query: 466 VNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQP 525
H+ +++ + + A +IA+W + L DI FK + +IK LAD +A
Sbjct: 1340 QGHSVTVVTSFPLGDVLHNREA-NGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395
Query: 526 LDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVS 585
++ + D P E I + W + FDG G G G V++S
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433
Query: 586 PQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWET 645
P G + + I F ++N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493
Query: 646 HHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQR 705
++ YR R+L F +EL H+ R N+ AD L S R +DV V+
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDV---FVEH 1549
Query: 706 LERPS--HVFTIEDMINRADGN--VVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLA 761
L P+ H T +D AD + V+ + W +FL S+E P +DK R++
Sbjct: 1550 LYTPTVPHKDTTQD----ADTHDVVMVEADWREPFIRFLSSQELP-----QDKDEAERIS 1600
Query: 762 GR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAG 818
R +++ LYK++ +L RCV E QL+ D+H G G HA T+ K R G
Sbjct: 1601 RRSKLYVMHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQG 1660
Query: 819 YYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASN 878
++W T D + R C CQ +A +IH+P L I WPF++WG+DM+G + KA
Sbjct: 1661 FFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVG 1719
Query: 879 GHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVV 938
G+ + VAID ++KW+EA +T F NI+ R+GVP++IITDNGT V
Sbjct: 1720 GYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVF 1778
Query: 939 QALCEEFKIEHHISSPYRPQMNGAVEAANKNI-----QKIVQKMVTTYKDWHEMLPYALH 993
+ CE+F I+ +S P NG VE AN I ++ ++ W + LP L
Sbjct: 1779 KDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLW 1838
Query: 994 GYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEE 1053
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE
Sbjct: 1839 SLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEE 1895
Query: 1054 KRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVV 1113
R A+ + Y ++ ++ VR R F G+LVL++ Q R K +P +EGP+++
Sbjct: 1896 AREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFII 1953
Query: 1114 KKAFSGGALILTHMDGVELPNPVNADIVKKYF 1145
+ G+ L DG + N N + +++++
Sbjct: 1954 SEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 678 bits (1749), Expect = 0.0
Identities = 396/1082 (36%), Positives = 585/1082 (53%), Gaps = 54/1082 (4%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 973 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1032
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1033 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1092
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 1093 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1152
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1153 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1212
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1213 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1272
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
Q AF+ K L EPP+L P PL++Y+S + V VL +++E G K + IY
Sbjct: 1273 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1332
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY H+ +++ + I V +
Sbjct: 1333 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREVNGR 1391
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1392 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1438
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1439 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1486
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1487 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSH 1546
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
+ R N+ AD L S R +DV V+ L P+ + + +
Sbjct: 1547 VLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQVAGTHDAAMVEVD 1602
Query: 732 WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
W +FL S+E P +DK R++ R ++L LYK++ +L RCV E
Sbjct: 1603 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEE 1657
Query: 789 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1658 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1717
Query: 849 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1718 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1776
Query: 909 KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1777 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1835
Query: 969 NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
I ++ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1836 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1895
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
SLR E + + R D L+ +EE R A+ R Y ++ ++ VR R F
Sbjct: 1896 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFL 1952
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1953 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2010
Query: 1144 YF 1145
++
Sbjct: 2011 FY 2012
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 677 bits (1746), Expect = 0.0
Identities = 397/1084 (36%), Positives = 585/1084 (53%), Gaps = 58/1084 (5%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 910 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 969
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 970 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1029
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 1030 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1089
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1090 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1149
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1150 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1209
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
Q AF+ K L EPPIL P PL++Y+S + V VL +++E G K + IY
Sbjct: 1210 AQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1269
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY H+ +++ + I +
Sbjct: 1270 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1328
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1329 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1375
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1376 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1423
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1424 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1483
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPS--HVFTIEDMINRADGNVVDD 729
+ R N+ AD L S + + + V+ L P+ H T +D V D
Sbjct: 1484 VLRHNNEAADRLANFGSKREMAPSD----VFVEHLYTPTVPHKDTTQDADTHDVALVEAD 1539
Query: 730 RPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDE 786
W +FL S+E P +DK R++ R + + LYK++ +L RCV
Sbjct: 1540 --WREPFIRFLTSQELP-----QDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSL 1592
Query: 787 HEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIH 846
E QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH
Sbjct: 1593 EEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIH 1652
Query: 847 VPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQV 906
+P L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1653 LPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADN 1711
Query: 907 VAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAA 966
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE A
Sbjct: 1712 ARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERA 1770
Query: 967 NKNI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLE 1021
N I ++ ++ W + LP L RTT +TG +PF LVYG EA+LP E
Sbjct: 1771 NGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSE 1830
Query: 1022 VEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPRE 1081
VE SLR E + + R D L+ +EE R A+ R Y ++ ++ VR R
Sbjct: 1831 VEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRA 1887
Query: 1082 FKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIV 1141
F G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +
Sbjct: 1888 FLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHL 1945
Query: 1142 KKYF 1145
++++
Sbjct: 1946 RRFY 1949
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 676 bits (1745), Expect = 0.0
Identities = 391/1082 (36%), Positives = 583/1082 (53%), Gaps = 54/1082 (4%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 970 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1029
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1030 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFL 1089
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 1090 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1149
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKL+GF+VS +GI+
Sbjct: 1150 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQ 1209
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1210 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1269
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
Q AF+ K L EPP+L P PL++Y+S + V VL +++E G K + IY
Sbjct: 1270 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1329
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY H+ +++ + I +
Sbjct: 1330 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1388
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1389 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1435
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1436 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1483
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1484 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1543
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
+ R N+ AD L S V + + V+ L P+ + + +
Sbjct: 1544 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVAMVETD 1599
Query: 732 WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
W +FL S+E P +DK R++ R +++ LYK++ +L RCV E
Sbjct: 1600 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1654
Query: 789 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1655 GRQLLQDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1714
Query: 849 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1715 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1773
Query: 909 KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1774 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1832
Query: 969 NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
I ++ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1833 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1892
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
SLR E + + R D L+ +EE R A+ R Y ++ ++ VR R F
Sbjct: 1893 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFL 1949
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1950 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2007
Query: 1144 YF 1145
++
Sbjct: 2008 FY 2009
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 675 bits (1742), Expect = 0.0
Identities = 395/1082 (36%), Positives = 584/1082 (53%), Gaps = 54/1082 (4%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 972 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1031
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ MCVD+ DL K+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1032 EVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1091
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 1092 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1151
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1152 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1211
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+KV AI M +P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1212 ANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPE 1271
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
Q AF+ K L EPP+L P PL++Y+S + V VL +++E G K + IY
Sbjct: 1272 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1331
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY H+ +++ + I +
Sbjct: 1332 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1390
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1391 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1437
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1438 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1485
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1486 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1545
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
+ R N+ AD L S R +DV V+ L P+ A + +
Sbjct: 1546 VLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQAAGAHDVAMVEAD 1601
Query: 732 WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
W +FL S+E P +DK R++ R ++L LYK++ +L RCV E
Sbjct: 1602 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEE 1656
Query: 789 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1657 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1716
Query: 849 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1717 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1775
Query: 909 KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1776 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1834
Query: 969 NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
I ++ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1835 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVE 1894
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
SLR E + + R D L+ +EE R A+ R Y ++ ++ VR R F
Sbjct: 1895 FESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFL 1951
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1952 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2009
Query: 1144 YF 1145
++
Sbjct: 2010 FY 2011
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 675 bits (1741), Expect = 0.0
Identities = 397/1105 (35%), Positives = 593/1105 (52%), Gaps = 52/1105 (4%)
Query: 50 KREIKVGAALEEGVKRKIFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQK 109
+ EI++ A E + L+ DIFAW DMPG+ +++EH + K + P++Q+
Sbjct: 929 REEIRLAATTESA----LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 984
Query: 110 LRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKAS 169
LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DL K+
Sbjct: 985 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1044
Query: 170 PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMP 229
PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP G +CY MP
Sbjct: 1045 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1104
Query: 230 FGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLR 289
FGL NAGATY R + F I + VE YVDD++VK+K ++ + L + F +R ++++
Sbjct: 1105 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLILDLEETFASIRAFRMK 1164
Query: 290 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRF 349
LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +SRF
Sbjct: 1165 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1224
Query: 350 ISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVF 409
+S + P FKLL+K W E Q AF+ K L +PP+L P PL++Y+S
Sbjct: 1225 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1284
Query: 410 DESVGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYL 465
+ V VL +++E G K + IY++S+ D +TRY ++K ++ ++L HY
Sbjct: 1285 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYF 1344
Query: 466 VNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQP 525
H+ +++ + + A +IA+W + L DI FK + +IK LAD +A
Sbjct: 1345 QGHSVTVVTSFPLGDVLHNREA-NGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1400
Query: 526 LDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVS 585
++ + D P E I + W + FDG G G G V++S
Sbjct: 1401 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1438
Query: 586 PQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWET 645
P G + + I F ++N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW
Sbjct: 1439 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1498
Query: 646 HHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQR 705
++ YR R+L F +EL H+ R N+ AD L S R +DV V+
Sbjct: 1499 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDV---FVEH 1554
Query: 706 LERPSHVFTIEDMINRADGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGRFL 765
L P+ + + + W +FL S+E P ++ + R + ++
Sbjct: 1555 LYSPTVPHKDATQVADTHDIAMVEADWREPLIRFLTSQELPQYKDEAER--ISRRSKLYV 1612
Query: 766 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTME 825
+ LYK++ +L RCV E QL+ D+H G G HA T+ K R G++W T
Sbjct: 1613 MHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAV 1672
Query: 826 HDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILV 885
D + R C CQ +A +IH+P L I WPF++WG+DM+G + KA G+ + +
Sbjct: 1673 SDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFM 1731
Query: 886 AIDYYTKWVEAASYANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEF 945
AID ++KW+EA +T F NI+ R+GVP++IITDNGT V + CE+F
Sbjct: 1732 AIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDF 1790
Query: 946 KIEHHISSPYRPQMNGAVEAANKNI-QKIVQKMVTTYK----DWHEMLPYALHGYRTTVR 1000
I+ +S P NG VE AN I Q+I ++ K W LP L RTT
Sbjct: 1791 GIKICYASVAHPMSNGQVERANGMILQRIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPS 1850
Query: 1001 SSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMA 1060
+TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE R A+
Sbjct: 1851 RATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVREAALI 1907
Query: 1061 RGQSYQARMKTAFDKKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGG 1120
+ Y ++ ++ VR R F G+LVL++ Q R K +P +EGP+++ + G
Sbjct: 1908 QSARYLQGLRRYHNRNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPG 1965
Query: 1121 ALILTHMDGVELPNPVNADIVKKYF 1145
+ L DG + N N + +++++
Sbjct: 1966 SYRLKREDGTLVDNSWNIEHIRRFY 1990
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 674 bits (1739), Expect = 0.0
Identities = 391/1082 (36%), Positives = 580/1082 (53%), Gaps = 54/1082 (4%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
Q AF+ K L EPP+L P PL++Y+S + V VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY H+ +++ + I +
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1395
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
+ R N+ AD L S V + + V+ L P+ + + +
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVAMVEAD 1606
Query: 732 WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
W +FL S+E P +DK R++ R +++ LYK++ +L RCV E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661
Query: 789 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721
Query: 849 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAP 1780
Query: 909 KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERANG 1839
Query: 969 NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
I ++ ++ W E LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
SLR E + + R D L+ +EE R A+ + Y ++ ++ VR R F
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVL++ Q R K +P +EGP+++ G+ L DG + N N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014
Query: 1144 YF 1145
++
Sbjct: 2015 FY 2016
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 673 bits (1737), Expect = 0.0
Identities = 391/1082 (36%), Positives = 579/1082 (53%), Gaps = 54/1082 (4%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ RMCVD+ DL K PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPE 1276
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
Q AF+ K L EPP+L P PL++Y+S + V VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIY 1336
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY H +++ + I +
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF-PLGDILHNREANGR 1395
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKVEH-------- 1442
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
+ R N+ AD L S V + + V+ L P+ + + +
Sbjct: 1551 VLRHNNKAADRLANFGSKREVAPSD----VFVEHLYAPTVPHKDTTQVAGTHDVAMVEAD 1606
Query: 732 WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
W +FL S+E P +DK R++ R +++ LYK++ +L RCV E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSLEE 1661
Query: 789 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721
Query: 849 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAFGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780
Query: 909 KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839
Query: 969 NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
I ++ ++ W E LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
SLR E + + R D L+ +EE R A+ + Y ++ ++ VR R F
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHLRR 2014
Query: 1144 YF 1145
++
Sbjct: 2015 FY 2016
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 673 bits (1736), Expect = 0.0
Identities = 390/1082 (36%), Positives = 581/1082 (53%), Gaps = 54/1082 (4%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 716 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIK 775
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ RMCVD+ DL K PKD F LP ID +VD+TA ++ SF+
Sbjct: 776 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 835
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 836 DCYSGYHQIRLKESDCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 895
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD+++K+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 896 EAYVDDVVIKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 955
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 956 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1015
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
Q AF+ K +L EPP+L P PL++Y+S + V VL +++E G K + IY
Sbjct: 1016 AQKAFEDFKKFLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1075
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY H+ +++ + I +
Sbjct: 1076 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1134
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1135 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1181
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1182 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1229
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1230 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1289
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
+ R N+ AD L S V + + V+ L P+ I + +
Sbjct: 1290 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEAD 1345
Query: 732 WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
W +FL S+E P +DK R++ R +++ LYK++ +L RCV E
Sbjct: 1346 WREPFIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1400
Query: 789 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1401 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1460
Query: 849 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1461 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1519
Query: 909 KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN
Sbjct: 1520 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1578
Query: 969 NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
I ++ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1579 MILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1638
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
SLR E + + R D L+ +EE R A+ + Y ++ ++ VR R F
Sbjct: 1639 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1695
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1696 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 1753
Query: 1144 YF 1145
++
Sbjct: 1754 FY 1755
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 671 bits (1730), Expect = 0.0
Identities = 391/1082 (36%), Positives = 581/1082 (53%), Gaps = 54/1082 (4%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLG-QQDETG---KKEHAIY 431
Q AF+ K L EPP+L P PL++Y+S + V VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY H+ +++ + + A R
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGR- 1395
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L D+ FK + +IK LAD +A + +C+E
Sbjct: 1396 IAKWALELMSLDLSFKPRISIKSQALADFVA----------------------EWTECQE 1433
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
+ + W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1434 DTTVKKME---HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW + YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSH 1550
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
+ R +N+ AD L S V + + V+ L P+ + +
Sbjct: 1551 VLRHDNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQAAGIHDVAMVETD 1606
Query: 732 WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
W +FL S+E P +DK R++ R +++ LYK++ +L RCV E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661
Query: 789 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721
Query: 849 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780
Query: 909 KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839
Query: 969 NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
I ++ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
SLR E + + R D L+ +EE R A+ R Y ++ ++ VR R F
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFL 1956
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVL++ Q R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRR 2014
Query: 1144 YF 1145
++
Sbjct: 2015 FY 2016
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 665 bits (1717), Expect = 0.0
Identities = 392/1091 (35%), Positives = 580/1091 (52%), Gaps = 68/1091 (6%)
Query: 67 IFQLLREYPDIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQ 126
+ L+ DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+
Sbjct: 973 LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELT 1032
Query: 127 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNT 186
K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+T
Sbjct: 1033 KLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDST 1092
Query: 187 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTL 246
A ++ SF+D +SGY+QI++ D KTSFITP G +CY MPFGL NAGATY R +
Sbjct: 1093 AGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRC 1152
Query: 247 FHDMIHKEVEVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 306
F I + VE YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKLLG
Sbjct: 1153 FSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLG 1212
Query: 307 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 366
F+VS +GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1213 FMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKK 1272
Query: 367 NQPIVWNDECQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVLG-QQDETG- 424
W E Q AF+ K L EPP+L P PL++Y+S + V VL +++E G
Sbjct: 1273 TDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGH 1332
Query: 425 --KKEHAIYYLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYI 482
K + IY++S+ D +TRY ++K L H+ +++ + I
Sbjct: 1333 VQKVQRPIYFVSEVLADSKTRYPQVQK--------------LLYGHSVTVVTSF-PLGDI 1377
Query: 483 FEKPAVTRKIARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIM 542
+IA+W + L DI FK + +IK LAD +A ++ + D P E++
Sbjct: 1378 LHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENME 1432
Query: 543 YLKSKDCEEPLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECT 602
+ W + FDG G G G V++SP G + + I F +
Sbjct: 1433 H--------------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1472
Query: 603 NNMAEYEACIFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLT 662
+N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L
Sbjct: 1473 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1532
Query: 663 YFTKVELHHIPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRA 722
F +EL H+ R N+ AD L S V + + V+ L P+ +
Sbjct: 1533 KFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGT 1588
Query: 723 DGNVVDDRPWYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMV 779
V + W +FL S+E P +DK R++ R +++ LYK++ +
Sbjct: 1589 HDVAVVETDWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGI 1643
Query: 780 LLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQ 839
L RCV E QL+ D+H G G HA T+ K R G++W T D + R C CQ
Sbjct: 1644 LQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQ 1703
Query: 840 IYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASY 899
+A +IH+P L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA
Sbjct: 1704 FFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPV 1762
Query: 900 ANVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQM 959
+T F NI+ R+GVP++IITDNGT V + CE+F I+ +S P
Sbjct: 1763 VTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMS 1821
Query: 960 NGAVEAANKNI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGM 1014
NG VE AN I ++ ++ W + LP L RTT +TG +PF LVYG
Sbjct: 1822 NGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGA 1881
Query: 1015 EAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFD 1074
EA+LP EVE SLR E + + R D L+ +EE R A+ R Y ++ +
Sbjct: 1882 EAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHN 1938
Query: 1075 KKVRPREFKGGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPN 1134
+ VR R F G+LVL++ Q R K +P +EGP+++ + G+ L DG + N
Sbjct: 1939 RNVRSRAFLVGDLVLRK--IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDN 1996
Query: 1135 PVNADIVKKYF 1145
N + +++++
Sbjct: 1997 SWNIEHLRRFY 2007
>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
Length = 2017
Score = 664 bits (1714), Expect = 0.0
Identities = 386/1082 (35%), Positives = 579/1082 (52%), Gaps = 54/1082 (4%)
Query: 76 DIFAWSYEDMPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLM 135
DIFAW DMPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 136 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFM 195
V +P+W+AN V V KK G+ RMCVD+ DL + PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 196 DGFSGYNQIKMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEV 255
D + GY+QI++ D KTSFITP G +CY MPFGL NAGATY R + F I + V
Sbjct: 1097 DCYLGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 256 EVYVDDMIVKSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 315
E YVDD++VK+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 316 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDE 375
+P+K+ AI M P T+K V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1217 ANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPD 1276
Query: 376 CQGAFDSIKNYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIY 431
Q AF+ K L EPP+L P PL++Y++ + V VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 432 YLSKKFTDCETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRK 491
++S+ D +TRY ++K ++ ++L HY +H+ +++ + I +
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSF-SLGDILHNREANGR 1395
Query: 492 IARWQMLLSEYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEE 551
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 552 PLIGEGPDPDSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 611
W + FDG G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 612 IFGIEEAIDMRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHH 671
+ G+ AI + IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 672 IPRDENQMADALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRP 731
+ R N+ AD L S V + + V+ L P+ I + +
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEAD 1606
Query: 732 WYYDTKQFLLSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 788
W +FL S+E P +DK R++ R +++ LYK++ +L RCV E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661
Query: 789 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVP 848
QL+ D+H G G HA T+ K R G++W T D + R C CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721
Query: 849 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVA 908
L I WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780
Query: 909 KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANK 968
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839
Query: 969 NI-----QKIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1023
I ++ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899
Query: 1024 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFK 1083
SLR E + + R D L+ +EE R A+ + Y ++ ++ VR R F
Sbjct: 1900 FESLRF---RNYREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956
Query: 1084 GGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 1143
G+LVL++ Q R K +P +EGP+++ G+ L DG + N N + +++
Sbjct: 1957 VGDLVLRK--IQTTRDRHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014
Query: 1144 YF 1145
++
Sbjct: 2015 FY 2016
>dbj|BAA84458.1| GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
Length = 1032
Score = 662 bits (1708), Expect = 0.0
Identities = 388/1073 (36%), Positives = 577/1073 (53%), Gaps = 54/1073 (5%)
Query: 85 MPGLDPKIVEHRIPTKPEYPPVRQKLRRTHPDMALKIKSEVQKQIDAGFLMTVEYPEWVA 144
MPG+ +++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+A
Sbjct: 1 MPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLA 60
Query: 145 NIVPVPKKDGKVRMCVDFRDLIKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 204
N V V KK G+ RMCVD+ DL K+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI
Sbjct: 61 NPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQI 120
Query: 205 KMSPEDREKTSFITP*GTFCYKVMPFGLINAGATY*RGMTTLFHDMIHKEVEVYVDDMIV 264
++ D KTSFITP G +CY MPFGL NAGATY R + F I + VE YVDD++V
Sbjct: 121 RLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVV 180
Query: 265 KSKDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 324
K+K ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI
Sbjct: 181 KTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAI 240
Query: 325 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQGAFDSIK 384
M P T+K V+ G + +SRF+S + P FKLL+K W E Q AF+ K
Sbjct: 241 LNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFK 300
Query: 385 NYLLEPPILVPPVEGRPLIMYLSVFDESVGCVL-GQQDETG---KKEHAIYYLSKKFTDC 440
L EPP+L P PL++Y+S + V VL +++E G K + IY++S+ D
Sbjct: 301 KLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADS 360
Query: 441 ETRYTMLEKTCCALVWAAKRLRHYLVNHTTWLISRMDQIKYIFEKPAVTRKIARWQMLLS 500
+TRY ++K ++ ++L HY H+ +++ + I +IA+W + L
Sbjct: 361 KTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELM 419
Query: 501 EYDIVFKAQKAIKGSILADHLAYQPLDDYQPIKFDFPDEDIMYLKSKDCEEPLIGEGPDP 560
DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 420 SLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH----------------- 457
Query: 561 DSKWGLVFDGDVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAID 620
W + FDG G G G V++SP G + + I F ++N+AEYEA + G+ AI
Sbjct: 458 ---WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSTSHNVAEYEALLHGLRIAIS 514
Query: 621 MRIKHLNIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMA 680
+ IK L + GDS LV+NQ+ EW ++ YR R+L F +EL H+ R N+ A
Sbjct: 515 LGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAA 574
Query: 681 DALGTISSMFRVNHWNDVPIIKVQRLERPSHVFTIEDMINRADGNVVDDRPWYYDTKQFL 740
D L S R +DV V+ L P+ + + + W +FL
Sbjct: 575 DRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQVADTHDIAMVEADWREPLIRFL 630
Query: 741 LSREYPPGASNKDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVH 797
S+E P +DK R++ R +++ LYK++ +L RCV E QL+ D+H
Sbjct: 631 TSQELP-----RDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIH 685
Query: 798 DGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISS 857
G G HA T+ K R G++W T D + R C CQ +A +IH+P L I
Sbjct: 686 SGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPL 745
Query: 858 PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYYTKWVEAASYANVTKQVVAKFIRNNIIC 917
WPF++WG+DM+G + KA G+ + VAID ++KW+EA +T F NI+
Sbjct: 746 SWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVH 803
Query: 918 RYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHISSPYRPQMNGAVEAANKNI-----QK 972
R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I +
Sbjct: 804 RFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKAR 863
Query: 973 IVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIME 1032
+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 864 VFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF--- 920
Query: 1033 AKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVRPREFKGGELVLKRR 1092
E + + R D L+ +EE R A+ R Y ++ ++ VR R F G+LVL++
Sbjct: 921 RNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRK- 979
Query: 1093 ISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 1145
Q R K +P +EGP+++ + G+ L DG + N N + +++++
Sbjct: 980 -IQTTRDRHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1031
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,053,663,770
Number of Sequences: 2540612
Number of extensions: 92150018
Number of successful extensions: 211819
Number of sequences better than 10.0: 5751
Number of HSP's better than 10.0 without gapping: 4784
Number of HSP's successfully gapped in prelim test: 968
Number of HSP's that attempted gapping in prelim test: 196694
Number of HSP's gapped (non-prelim): 9145
length of query: 1145
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1006
effective length of database: 510,215,326
effective search space: 513276617956
effective search space used: 513276617956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)
Medicago: description of AC148652.2