BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148486.10 - phase: 0
(659 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK30205.1| poly(A)-binding protein [Daucus carota] 970 0.0
gb|AAF66823.1| poly(A)-binding protein [Nicotiana tabacum] 951 0.0
gb|AAF63202.1| poly(A)-binding protein [Cucumis sativus] 949 0.0
ref|XP_450039.1| putative poly(A)-binding protein [Oryza sativa ... 864 0.0
emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana] g... 862 0.0
ref|XP_481529.1| putative poly(A)-binding protein [Oryza sativa ... 859 0.0
emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa (japonica cultiva... 853 0.0
gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis tha... 852 0.0
gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thal... 839 0.0
gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum] gi|74... 821 0.0
gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis tha... 782 0.0
gb|AAK25927.1| putative poly(A) binding protein [Arabidopsis tha... 781 0.0
gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum] 734 0.0
emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis... 724 0.0
gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa (j... 617 e-175
ref|NP_195137.2| polyadenylate-binding protein 2 (PABP2) [Arabid... 609 e-173
emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana... 607 e-172
gb|AAG02117.1| poly(A) binding protein [Arabidopsis thaliana] 607 e-172
ref|NP_177322.1| polyadenylate-binding protein 5 (PABP5) [Arabid... 597 e-169
gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding pr... 596 e-169
>gb|AAK30205.1| poly(A)-binding protein [Daucus carota]
Length = 658
Score = 970 bits (2507), Expect = 0.0
Identities = 502/673 (74%), Positives = 567/673 (83%), Gaps = 32/673 (4%)
Query: 1 MAQIQVQ---HQTPAPVPAPSNGVVPNVA------NQFVTTSLYVGDLEVNVNDSQLYDL 51
MAQIQVQ Q PV SNGV A NQF TTSLYVGDL+ +V DSQLYDL
Sbjct: 1 MAQIQVQPQQQQQQIPVSG-SNGVSAGAAANAGGSNQFTTTSLYVGDLDQSVTDSQLYDL 59
Query: 52 FNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRD 111
FNQVGQVVSVRVCRDL+T RSLGYGYVN++N QDA RA+DVLNFTP+NNK+IRV S RD
Sbjct: 60 FNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRD 119
Query: 112 PSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAED 171
P+ RKSG NIFIKNLDK+ID KALH+TFSSFG I+SCKIATD SGQSKGYGFVQ+++E+
Sbjct: 120 PTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEE 179
Query: 172 SAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEF 231
+AQ AIDKLNGML+NDKQV+VG FLRKQDRD+ +SKTKFNN+YVKNLS+S +EDDL+ F
Sbjct: 180 AAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTF 239
Query: 232 GAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSE 291
G YGTITS V+MRDADG+SKCFGFVNFEN EDAAKAV+ALNGKK DD+EWYVGKAQKKSE
Sbjct: 240 GEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSE 299
Query: 292 REQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMIL 351
RE ELK RFEQTVKE VDK+QG+NLY+KNLDD+I DEKLKE+FSE+GTITS KV
Sbjct: 300 REVELKSRFEQTVKEQ-VDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKV----- 353
Query: 352 FTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRAR 411
MRDP+G+SRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA+AQRKE+RRAR
Sbjct: 354 -------MRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRAR 406
Query: 412 LQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPG 471
LQAQFSQMRPVA+ PS+ PRMP+Y PG PG+GQQ YGQ PPAM+ PQAGFGYQQQLVPG
Sbjct: 407 LQAQFSQMRPVAMPPSMGPRMPMYSPGAPGMGQQLFYGQAPPAMIAPQAGFGYQQQLVPG 466
Query: 472 MRPGGGPMPSYFVPMVQQGQQGQRPGGRRG-GPGQQPPQQVPMMQQQMLPRQRVYRYPPG 530
MRPGGGPMP++F+PMVQQGQQGQRPGGRRG GP QQ Q VPMM QQ++PR R+YR+PPG
Sbjct: 467 MRPGGGPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQQLMPRGRMYRFPPG 526
Query: 531 RSNIQDAPVQNIGGGMM--SYDMGGLPLRDVV--PPMPIHALATALANAPPEQQRTMLGE 586
R N+ D + +GGGM+ Y+MGG+ R+ PMPI ALA+ALANAP +QQRTMLGE
Sbjct: 527 R-NVGDVTMPGVGGGMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGE 585
Query: 587 ALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNS 646
LYPLVDQLEHD AAKVTGMLLEMDQ EVLHL+ESPDALKAKVAEAM+VLRNVSQ +
Sbjct: 586 NLYPLVDQLEHDHAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQP---N 642
Query: 647 PADQLASLSLNDS 659
ADQL LSLN++
Sbjct: 643 VADQLGGLSLNEN 655
>gb|AAF66823.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 951 bits (2457), Expect = 0.0
Identities = 482/664 (72%), Positives = 562/664 (84%), Gaps = 25/664 (3%)
Query: 1 MAQIQVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVS 60
MAQ+QVQ Q P + GV NQFVT SLYVGDL+VNV DSQLYDLFNQ+GQVVS
Sbjct: 1 MAQVQVQQQQPQGGVNNAGGV----NNQFVT-SLYVGDLDVNVTDSQLYDLFNQLGQVVS 55
Query: 61 VRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTA 120
VRVCRDL ++RSLGYGYVN+ NPQDAARAL+VLNFTP++ K IR+MYS+RDP+ R+SG
Sbjct: 56 VRVCRDLTSQRSLGYGYVNYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNG 115
Query: 121 NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180
NIFIKNLDK IDHKALHDTFS+FG I+SCK+A D SGQSKGYGFVQ+++E++AQ AI+KL
Sbjct: 116 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKL 175
Query: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSA 240
NGML+NDKQV+VG F+RK +RD + KT+F NV+VKNLSES E++L+ FG +G ITS
Sbjct: 176 NGMLLNDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGAITSV 235
Query: 241 VLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRF 300
+M+D DG+S+CFGFVNFENAEDAA+AVEALNG K+D+++W+VG+AQKKSERE ELK RF
Sbjct: 236 AVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRF 295
Query: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMR 360
EQ+ KE+ VDK QGLNLY+KNLDDSI+DEKLKE+FS +GTITS KV MR
Sbjct: 296 EQSAKEA-VDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKV------------MR 342
Query: 361 DPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMR 420
DP+GVS+GSGFVAFS PEEASRAL EMNGKM+VSKPLYVA+AQRKE+RRARLQAQFSQMR
Sbjct: 343 DPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMR 402
Query: 421 PVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMP 480
P+A+ SVAPRMP+YPPG PGLGQQ YGQ PAM+PPQAGFGYQQQLVPGMRPGGGPMP
Sbjct: 403 PIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLPPQAGFGYQQQLVPGMRPGGGPMP 462
Query: 481 SYFVPMVQQGQQGQRPGGRRGG--PGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQDAP 538
++F+PMVQQGQQGQRPGGRRGG P QQ Q VP+MQQQM PR R YRYPPGR + D
Sbjct: 463 NFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPGR-GLPDVA 521
Query: 539 VQNIGGGMMS--YDMGGLPLRD--VVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQ 594
+GGGM S YDMGG+P+RD +V P+P+ ALATALAN+ P +QRTMLGE LYPLV+Q
Sbjct: 522 FPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGALATALANSSPTEQRTMLGENLYPLVEQ 581
Query: 595 LEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLASL 654
LE ++AAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAMEVLRNVSQQQ ++PADQLASL
Sbjct: 582 LEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPADQLASL 641
Query: 655 SLND 658
SLND
Sbjct: 642 SLND 645
>gb|AAF63202.1| poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 949 bits (2453), Expect = 0.0
Identities = 487/666 (73%), Positives = 561/666 (84%), Gaps = 27/666 (4%)
Query: 1 MAQIQVQHQTP--APVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQV 58
MAQ+ Q Q P PA + G ANQ VTTSLYVGDL+VNV DSQLYDLFNQVGQV
Sbjct: 1 MAQVPPQPQVPNSGADPAANGG-----ANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQV 55
Query: 59 VSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSG 118
VSVRVCRDL +RRSLGYGYVN++NP DA+RALDVLNFTP+N IRVMYSHRDPS RKSG
Sbjct: 56 VSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSG 115
Query: 119 TANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAID 178
+ NIFIKNLDK IDHKALHDTFS+FG I+SCK+ATD SGQSKG+GFVQF+ E++A AI+
Sbjct: 116 SGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIE 175
Query: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTIT 238
KLNGML+NDKQVFVG FLRKQ+R++V KTKFNNV+VKNL+E+ +E+DLKN FG +G IT
Sbjct: 176 KLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPIT 235
Query: 239 SAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKG 298
S V+MRD +G+SKCFGFVNFENA+DAA++VEALNGKKVD +EWYVGKAQKKSERE ELK
Sbjct: 236 SVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKS 295
Query: 299 RFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVI 358
RFEQ+VKE+ DK+QG NLY+KNLDDSI D+KLKE+F+ FGTITS KV
Sbjct: 296 RFEQSVKEA-ADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKV------------ 342
Query: 359 MRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ 418
MRDPNG+SRGSGFVAFS+PEEA+RAL EMNG+MIVSKPLYVA+AQRKEDR ARLQAQFSQ
Sbjct: 343 MRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQ 402
Query: 419 MRPVAITPSVAPR-MPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGG 477
M+P+A+ SVAPR MP+YPPG PG+GQQ YGQ PP ++ Q GFGYQQQL+PGMRPGGG
Sbjct: 403 MQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGG 462
Query: 478 PMPSYFVPMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQDA 537
PMP++FVPMVQQGQQGQR GGRR G QQ Q VP+MQQQMLPR RVYRYPPGR + D
Sbjct: 463 PMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGR-GLPDL 521
Query: 538 PVQNIGGGMMS--YDMGGLPLRDVV--PPMPIHALATALANAPPEQQRTMLGEALYPLVD 593
P+ + GGM S Y+MGG+P RD V P+P+ ALA+ALANA P+QQRTMLGE LYPLV+
Sbjct: 522 PMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVE 581
Query: 594 QLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLAS 653
QLE D+AAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAMEVLR+V+QQ GN+ ADQLAS
Sbjct: 582 QLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNA-ADQLAS 640
Query: 654 LSLNDS 659
LSL D+
Sbjct: 641 LSLTDN 646
>ref|XP_450039.1| putative poly(A)-binding protein [Oryza sativa (japonica
cultivar-group)] gi|51963704|ref|XP_506632.1| PREDICTED
OJ1310_F05.15 gene product [Oryza sativa (japonica
cultivar-group)] gi|46389987|dbj|BAD16229.1| putative
poly(A)-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 662
Score = 864 bits (2233), Expect = 0.0
Identities = 444/652 (68%), Positives = 527/652 (80%), Gaps = 25/652 (3%)
Query: 15 PAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLG 74
PA S A F TSLYVGDL+V+V D+QL+D+F QVG VVSVRVCRD+ TRRSLG
Sbjct: 23 PASSAAAAAAAAASFPATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLG 82
Query: 75 YGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHK 134
Y YVN+++P DAARAL++LNFTP+N K IR+MYS+RDPS RKSGTANIFIKNLDK+ID+K
Sbjct: 83 YAYVNYSSPADAARALEMLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNK 142
Query: 135 ALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGH 194
AL+DTF FG I+SCK+ATD SG+SKGYGFVQ+E +++AQ AIDKLNGML+NDK+V+VG
Sbjct: 143 ALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGP 202
Query: 195 FLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFG 254
F+RKQ+RDN + KFNNVYVKNLSE+ TEDDLK FG +GTITSAV+MR+ DGRSKCFG
Sbjct: 203 FIRKQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFG 262
Query: 255 FVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQG 314
FVNFE+ +DAA+AV+ LNGKK DD+EWYVG+AQKKSERE ELK +FE+ ++E+ DK+Q
Sbjct: 263 FVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEA-ADKYQN 321
Query: 315 LNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAF 374
NLYLKNLDDS+ D+KL+E+F+E+GTITS KV MRD NGVSRGSGFVAF
Sbjct: 322 TNLYLKNLDDSVDDDKLRELFAEYGTITSCKV------------MRDSNGVSRGSGFVAF 369
Query: 375 STPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPL 434
+ E+ASRAL EMN KM+ SKPLYVA+AQRKEDR+ARLQAQFSQ+RPV + PSV PRMP+
Sbjct: 370 KSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPM 429
Query: 435 YPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQ 494
+PPG PG+GQQ YGQ PPA + Q GFG+QQ L+PGMRPG GPMP++ +PMVQQGQQ Q
Sbjct: 430 FPPGVPGVGQQLFYGQPPPAFINTQPGFGFQQPLMPGMRPGAGPMPNFIMPMVQQGQQPQ 489
Query: 495 RPGGRRGGPG--QQPPQQVPMMQQQMLPR-QRVYRYPPGRSNIQDAPVQNIGGGMM--SY 549
RP GRR G G QQP +PM QQQM+ R R YRYP GR + D + +GGG+M Y
Sbjct: 490 RPAGRRAGAGGMQQP---MPMGQQQMMARGGRGYRYPTGR-GMPDPAMHGVGGGVMPSPY 545
Query: 550 DMGGLPLRDVV--PPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGML 607
+MGG+P+RD P+PI ALATALANA P+QQR MLGE LYPLVDQLEH+ AAKVTGML
Sbjct: 546 EMGGMPMRDAAASQPVPIGALATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGML 605
Query: 608 LEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGN-SPADQLASLSLND 658
LEMDQ EVLHL+ESP+ALKAKVAEAMEVLR Q Q N +P QLASLSLND
Sbjct: 606 LEMDQTEVLHLLESPEALKAKVAEAMEVLRTAQQIQTNATPEQQLASLSLND 657
>emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein
[Arabidopsis thaliana] gi|26983870|gb|AAN86187.1|
putative polyadenylate-binding protein 2 (PABP2)
[Arabidopsis thaliana] gi|1171978|sp|P42731|PABP2_ARATH
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PABP 2) gi|304109|gb|AAA61780.1| poly(A)-binding
protein
Length = 629
Score = 862 bits (2226), Expect = 0.0
Identities = 446/665 (67%), Positives = 523/665 (78%), Gaps = 44/665 (6%)
Query: 1 MAQIQVQHQTP-------APVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFN 53
MAQ+Q+Q QTP PA S G A QF TSLYVGDL+ NV DSQL+D F
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGAT---ATQFGNTSLYVGDLDFNVTDSQLFDAFG 57
Query: 54 QVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPS 113
Q+G VV+VRVCRDL TRRSLGYGYVNFTNPQDAARA+ LN+ P+ K IRVMYSHRDPS
Sbjct: 58 QMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPS 117
Query: 114 SRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSA 173
R+SG NIFIKNLD++IDHKALHDTFSSFG I+SCK+A D SGQSKGYGFVQ+ E+SA
Sbjct: 118 VRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESA 177
Query: 174 QNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGA 233
Q AI+KLNGML+NDKQV+VG FLR+Q+RD+ +KTKF NVYVKNL+ES T+DDLKN FG
Sbjct: 178 QKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGE 237
Query: 234 YGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSERE 293
YG ITSAV+M+D +G+SK FGFVNFENA+DAA+AVE+LNG K DD+EWYVG+AQKKSERE
Sbjct: 238 YGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERE 297
Query: 294 QELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFT 353
EL+ R+EQ +KE+ DKFQ NLY+KNLD SI+DEKLKE+FS FGT+TS KV
Sbjct: 298 TELRVRYEQNLKEA-ADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV------- 349
Query: 354 DIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQ 413
MRDPNG S+GSGFVAF+TPEEA+ A+ +++GKMI SKPLYVA+AQRKEDRR RLQ
Sbjct: 350 -----MRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQ 404
Query: 414 AQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMR 473
AQFSQ+RPVA+ PSV PRMP+YPPG PG+GQQ YGQ PPAM+PPQ G+GYQQQLVPGMR
Sbjct: 405 AQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMR 464
Query: 474 PGGGPMPSYFVPMVQQGQQGQRP-GGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRS 532
PGGGP+PS+F+PMVQ Q QRP GGRR G Q QQ PMMQQQM PR R++RYP GR
Sbjct: 465 PGGGPVPSFFMPMVQ--PQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRG 522
Query: 533 NIQDAPVQNIGGGMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLV 592
D P ++G M P+ I ALA+ L+NA PEQQRTMLGE LYPLV
Sbjct: 523 GSGDVPPYDMGNNM---------------PLTIGALASNLSNATPEQQRTMLGEVLYPLV 567
Query: 593 DQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLA 652
+Q+E +SAAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAM+VLR+V+ +QLA
Sbjct: 568 EQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLA 624
Query: 653 SLSLN 657
SL+L+
Sbjct: 625 SLNLS 629
>ref|XP_481529.1| putative poly(A)-binding protein [Oryza sativa (japonica
cultivar-group)] gi|35215184|dbj|BAC92537.1| putative
polyadenylate-binding protein [Oryza sativa (japonica
cultivar-group)] gi|35215045|dbj|BAC92404.1| putative
polyadenylate-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 660
Score = 859 bits (2219), Expect = 0.0
Identities = 450/657 (68%), Positives = 530/657 (80%), Gaps = 30/657 (4%)
Query: 15 PAPSNGVVPN-----VANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLAT 69
P +NGVV A F TSLYVGDL+V+V D+QL+D+F+QVG VVSVRVCRD+ T
Sbjct: 17 PPQANGVVAAGSAAAAAATFQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNT 76
Query: 70 RRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDK 129
R SLGY YVNF++P DAARAL++LNFTP+N K IR+MYS+RDPSSRKSG ANIFIKNLDK
Sbjct: 77 RLSLGYAYVNFSSPADAARALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDK 136
Query: 130 TIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQ 189
+ID+KAL+DTFS FG I+SCK+AT+ SG+SKGYGFVQFE E++AQNAI KLNGML+NDK+
Sbjct: 137 SIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKK 196
Query: 190 VFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGR 249
V+VG F+RKQ+R+NV KFNNVYVKNLSES TED+LK FG +G ITS V+MR+ DG+
Sbjct: 197 VYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGK 256
Query: 250 SKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVV 309
S+CFGFVNFEN +DAA+AVE LNGKK DD+EWYV +AQKKSERE ELK +FE+ +KE+
Sbjct: 257 SRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEA-A 315
Query: 310 DKFQGLNLYLKNLDDSI-TDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRG 368
DK QG NLYLKNLDDSI DEKLKE+F++FGTITS KV MRD NGVS+G
Sbjct: 316 DKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKV------------MRDLNGVSKG 363
Query: 369 SGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSV 428
SGFVAF + E+ASRAL MNGKMI SKPLYVA+AQRKE+RRARLQAQFSQMRP+ + PSV
Sbjct: 364 SGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRPMVMPPSV 423
Query: 429 APRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQ 488
APRMP+YPPG PG+GQQ YGQ PPA + PQ GFG+QQ L+PGMRP GP+P++ +PMVQ
Sbjct: 424 APRMPMYPPGVPGVGQQLFYGQPPPAFVNPQPGFGFQQHLIPGMRPSVGPIPNFVMPMVQ 483
Query: 489 QGQQGQRPGGRRGGPG--QQPPQQVPMMQQQMLPR--QRVYRYPPGRSNIQDAPVQNIGG 544
QGQQ QRP GRR G G QQP +PM QQMLPR + YRY GR + D + +GG
Sbjct: 484 QGQQPQRPAGRRAGTGGIQQP---MPMGHQQMLPRGSRGGYRYASGR-GMPDNAFRGVGG 539
Query: 545 GMMS-YDMGGLPLRD--VVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAA 601
+ S Y+MG +PL D P +PI ALA+ALAN+PP+QQR MLGE+LYPLVDQLEHD AA
Sbjct: 540 LVPSPYEMGRMPLSDAGAPPQVPIGALASALANSPPDQQRLMLGESLYPLVDQLEHDQAA 599
Query: 602 KVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLASLSLND 658
KVTGMLLEMDQ EVLHLIESPDALKAKVAEAMEVLRN QQQ N+P DQLA+L+L+D
Sbjct: 600 KVTGMLLEMDQTEVLHLIESPDALKAKVAEAMEVLRNAQQQQANTPTDQLAALTLSD 656
>emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa (japonica cultivar-group)]
gi|38345164|emb|CAE02946.2| OSJNBa0014K14.18 [Oryza
sativa (japonica cultivar-group)]
gi|50926280|ref|XP_473087.1| OSJNBa0014K14.18 [Oryza
sativa (japonica cultivar-group)]
Length = 659
Score = 853 bits (2205), Expect = 0.0
Identities = 435/631 (68%), Positives = 517/631 (80%), Gaps = 18/631 (2%)
Query: 33 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDV 92
SLYVGDLE +V DSQLY+LF+Q GQV+SVRVCRD+++RRSLGY YVNF NP DAARAL++
Sbjct: 40 SLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALEL 99
Query: 93 LNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIA 152
LNF P+N K IRVMYS+RDPSSR+SG+ANIFIKNLDK IDHK LHDTFS+FG I+SCK+A
Sbjct: 100 LNFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVA 159
Query: 153 TDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNN 212
TD GQSKG+GFVQ++ ++AQ+AI LNGMLINDK V+VG FLRKQ+R+N + KTKFNN
Sbjct: 160 TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNN 219
Query: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALN 272
V+VKNLSES T++DL FGAYG ITSAV+M DG+S+CFGF+NF++ +DAA+AVE LN
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELN 279
Query: 273 GKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLK 332
GKK++D+EWYVG+AQKKSERE ELK RFEQ++K++ DK+QGLNLY+KNLDDSI D++L
Sbjct: 280 GKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDA-ADKYQGLNLYMKNLDDSIGDDQLC 338
Query: 333 EMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMI 392
E+FS +G ITS K IMRD NGVS+GSGFVAFST EEAS+AL EMNGKMI
Sbjct: 339 ELFSNYGKITSCK------------IMRDANGVSKGSGFVAFSTREEASQALTEMNGKMI 386
Query: 393 VSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGP 452
KPLYVA AQRKEDR+A LQAQFSQ+RPV +TPS+APR+P+YPP P LGQQ YGQ P
Sbjct: 387 SGKPLYVAFAQRKEDRKAMLQAQFSQVRPVPMTPSMAPRLPMYPPMAP-LGQQLFYGQAP 445
Query: 453 PAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQRPGGRRGGPGQ-QPPQQV 511
PA+MPPQ GFG+QQQLVPGMRPGG MP+YFVP+VQQGQQG RPG RR G G Q Q
Sbjct: 446 PAIMPPQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSA 505
Query: 512 PMMQQQMLPRQRVYRYPPGRSNIQDAPVQNIGGGMM-SYDMGGLPLRDV-VPPMPIHALA 569
QQQMLPR RVYRYPP + P+ + GGM+ SYDMGG P+RD + P PI L
Sbjct: 506 QPFQQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLSPAPIGTLT 565
Query: 570 TALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKV 629
+ALANA PEQQRT+LGE+LYPLV+ LE + AAKVTGMLLEMDQ EVLHL+ESP+ALK+KV
Sbjct: 566 SALANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKV 625
Query: 630 AEAMEVLRNVSQQ-QGNSPADQLASLSLNDS 659
AEAM+VLRNV+QQ N+P QLA+LSL D+
Sbjct: 626 AEAMDVLRNVAQQHNANTPTSQLAALSLGDA 656
Score = 51.2 bits (121), Expect = 1e-04
Identities = 26/87 (29%), Positives = 54/87 (61%), Gaps = 1/87 (1%)
Query: 24 NVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNP 83
+ A+++ +LY+ +L+ ++ D QL +LF+ G++ S ++ RD A S G G+V F+
Sbjct: 313 DAADKYQGLNLYMKNLDDSIGDDQLCELFSNYGKITSCKIMRD-ANGVSKGSGFVAFSTR 371
Query: 84 QDAARALDVLNFTPMNNKSIRVMYSHR 110
++A++AL +N ++ K + V ++ R
Sbjct: 372 EEASQALTEMNGKMISGKPLYVAFAQR 398
>gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 852 bits (2202), Expect = 0.0
Identities = 438/644 (68%), Positives = 513/644 (79%), Gaps = 37/644 (5%)
Query: 15 PAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLG 74
PA S G A QF TSLYVGDL+ NV DSQL+D F Q+G VV+VRVCRDL TRRSLG
Sbjct: 6 PATSGGAT---ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLG 62
Query: 75 YGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHK 134
YGYVNFTNPQDAARA+ LN+ P+ K IRVMYSHRDPS R+SG NIFIKNLD++IDHK
Sbjct: 63 YGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHK 122
Query: 135 ALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGH 194
ALHDTFSSFG I+SCK+A D SGQSKGYGFVQ+ E+SAQ AI+KLNGML+NDKQV+VG
Sbjct: 123 ALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 182
Query: 195 FLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFG 254
FLR+Q+RD+ +KTKF NVYVKNL+ES T+DDLKN FG YG ITSAV+M+D +G+SK FG
Sbjct: 183 FLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFG 242
Query: 255 FVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQG 314
FVNFENA+DAA+AVE+LNG K DD+EWYVG+AQKKSERE EL+ R+EQ +KE+ DKFQ
Sbjct: 243 FVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEA-ADKFQS 301
Query: 315 LNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAF 374
NLY+KNLD SI+DEKLKE+FS FGT+TS KV MRDPNG S+GSGFVAF
Sbjct: 302 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV------------MRDPNGTSKGSGFVAF 349
Query: 375 STPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPL 434
+TPEEA+ A+ +++GKMI SKPLYVA+AQRKEDRR RLQAQFSQ+RPVA+ PSV PRMP+
Sbjct: 350 ATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPV 409
Query: 435 YPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQ 494
YPPG PG+GQQ YGQ PPAM+PPQ G+GYQQQLVPGMRPGGGP+PS+F+PMVQ Q Q
Sbjct: 410 YPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQ--PQQQ 467
Query: 495 RP-GGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQDAPVQNIGGGMMSYDMGG 553
RP GGRR G Q QQ PMMQQQM PR R++RYP GR D P ++G M
Sbjct: 468 RPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNM------- 520
Query: 554 LPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQP 613
P+ I ALA+ L+NA PEQQRTMLGE LYPLV+Q+E +SAAKVTGMLLEMDQ
Sbjct: 521 --------PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQT 572
Query: 614 EVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLASLSLN 657
EVLHL+ESP+ALKAKVAEAM+VLR+V+ +QLASL+L+
Sbjct: 573 EVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 613
>gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|18402769|ref|NP_564554.1| polyadenylate-binding
protein, putative / PABP, putative [Arabidopsis
thaliana] gi|13877633|gb|AAK43894.1| Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1| Putative Poly-A Binding
Protein [Arabidopsis thaliana] gi|25294313|pir||C96534
probable Poly-A Binding Protein [imported] - Arabidopsis
thaliana
Length = 671
Score = 839 bits (2168), Expect = 0.0
Identities = 446/684 (65%), Positives = 523/684 (76%), Gaps = 41/684 (5%)
Query: 1 MAQIQVQHQTP-----------APVPAPSNGVVPNVAN--QFVTTSLYVGDLEVNVNDSQ 47
MAQIQ Q Q A A + G A Q TTSLYVGDL+ V DSQ
Sbjct: 1 MAQIQHQGQNANGGVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQ 60
Query: 48 LYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMY 107
L++ F Q GQVVSVRVCRD+ TRRSLGYGYVN+ PQDA+RAL+ LNF +N ++IRVMY
Sbjct: 61 LFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMY 120
Query: 108 SHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQF 167
S RDPS RKSG NIFIKNLDK+IDHKALH+TFS+FG I+SCK+A D SGQSKGYGFVQ+
Sbjct: 121 SVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQY 180
Query: 168 EAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDL 227
+ +++AQ AIDKLNGML+NDKQV+VG F+ K RD K KF NVYVKNLSES ++++L
Sbjct: 181 DTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 240
Query: 228 KNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQ 287
FG +G TS V+MRD +G+SK FGFVNFEN++DAA+AV+ALNGK DD+EW+VGKAQ
Sbjct: 241 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 300
Query: 288 KKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVC 347
KKSERE ELK +FEQ++KE+ DK QG NLY+KNLD+S+TD+KL+E F+ FGTITS KV
Sbjct: 301 KKSERETELKQKFEQSLKEA-ADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKV- 358
Query: 348 TMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKED 407
MRDP+GVSRGSGFVAFSTPEEA+RA+ EMNGKMIV+KPLYVA+AQRKED
Sbjct: 359 -----------MRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKED 407
Query: 408 RRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQ 467
R+ARLQAQFSQMRPV + P+V PRM +YPPG P +GQQ YGQGPPAM+ PQ GFGYQQQ
Sbjct: 408 RKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMI-PQPGFGYQQQ 466
Query: 468 LVPGMRPGGGPMPSYFVPMVQQG-------QQGQRPGGRRGGPGQQPPQQVPMMQQQMLP 520
LVPGMRPGG PMP++F+PM+QQG QQ QRPGG R G QP Q PMMQQQM P
Sbjct: 467 LVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHP 526
Query: 521 RQRVYRYPPGRSNIQDAPVQNIGGGMMSYDM---GGLPLRD--VVPPMPIHALATALANA 575
R R+YRYP N P QN+ + YD+ GG+ RD P+PI ALAT LANA
Sbjct: 527 RGRMYRYPQRDVNTMPGPTQNMLS--VPYDVSSGGGVHHRDSPTSQPVPIVALATRLANA 584
Query: 576 PPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEV 635
PEQQRTMLGE LYPLV+QLE +SAAKVTGMLLEMDQ EVLHL+ESP+ALKAKV EAM+V
Sbjct: 585 APEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDV 644
Query: 636 LRNVSQQQGNSPADQLASLSLNDS 659
LR+V+QQQ ADQLASLSL D+
Sbjct: 645 LRSVAQQQAGGAADQLASLSLGDN 668
>gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum] gi|7439967|pir||T06979
polyadenylate-binding protein - wheat
Length = 651
Score = 821 bits (2121), Expect = 0.0
Identities = 424/649 (65%), Positives = 509/649 (78%), Gaps = 22/649 (3%)
Query: 15 PAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLG 74
PA + A+ F TSLYVGDL+V+V D+QL+D+F Q+G VVSVRVCRD+ +R+SLG
Sbjct: 15 PAAAAAAAAAAASSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLG 74
Query: 75 YGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHK 134
Y YVN+ P DAARAL++LNFTP+N + IR+MYS+RDPS RKSGTANIFIKNLDK+ID+K
Sbjct: 75 YAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNK 134
Query: 135 ALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGH 194
AL+DTF FG I+SCK+ATD +G+SKGYGFVQ+E +++A AI+KLNGML+NDK+V+VG
Sbjct: 135 ALYDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 194
Query: 195 FLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFG 254
F+RKQ+RDN KFNNVYVKNL+E+ TEDDLK FG +G ITS V+MRD DGRSKCFG
Sbjct: 195 FVRKQERDNSPGNVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFG 254
Query: 255 FVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQG 314
FVNFE+ ++AA AV+ LNGKK D+EWYVG+AQKKSERE ELK +FE+ ++E+ DK+Q
Sbjct: 255 FVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEA-ADKYQN 313
Query: 315 LNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRGSGFVAF 374
NLYLKNLDD++ DEKL+E+F+EFGTITS KV MRD NG SRGSGFVAF
Sbjct: 314 TNLYLKNLDDTVDDEKLRELFAEFGTITSCKV------------MRDSNGASRGSGFVAF 361
Query: 375 STPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPL 434
+ ++ASRAL EMN KM+ +KPLYVA+AQRKEDR+ARLQAQFSQMRPV + +V PRM +
Sbjct: 362 KSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQM 421
Query: 435 YPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSYFVPMVQQGQQGQ 494
PPG P +GQQ YGQ PPA + PQ GFG+QQ +PGMRPGG PMP++ +PMVQQGQQ Q
Sbjct: 422 LPPGVP-VGQQMFYGQ-PPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQ 479
Query: 495 RPGGRRGGPGQQPPQQVPMMQQQMLPR--QRVYRYPPGRSNIQDAPVQNIGGGMMS-YDM 551
RP GRR G G Q + M QQQML R R YRY GR + D + +GG M S Y+M
Sbjct: 480 RPAGRRAGAGGM-QQSMQMGQQQMLGRGGGRGYRYQTGR-GMPDPAMHGVGGVMTSPYEM 537
Query: 552 GGLPLRDV--VPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLE 609
GG+P+RD P+PI ALA+ALAN+PPE QR MLGE LYPLVDQLEHD AAKVTGMLLE
Sbjct: 538 GGMPMRDAGESQPVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLE 597
Query: 610 MDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLASLSLND 658
MDQ EVLHL+ESPDALKAKVAEAMEVLR+ Q SP QLASLSLND
Sbjct: 598 MDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLND 646
>gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding
protein [Arabidopsis thaliana] gi|2642429|gb|AAB87097.1|
putative poly(A) binding protein [Arabidopsis thaliana]
gi|15227815|ref|NP_179916.1| polyadenylate-binding
protein, putative / PABP, putative [Arabidopsis
thaliana] gi|7439964|pir||T00497 polyadenylate-binding
protein At2g23350 [imported] - Arabidopsis thaliana
Length = 662
Score = 782 bits (2019), Expect = 0.0
Identities = 418/687 (60%), Positives = 502/687 (72%), Gaps = 56/687 (8%)
Query: 1 MAQIQVQHQTPAPVPAPSN----------GVVPNVANQFVT----TSLYVGDLEVNVNDS 46
MAQ+Q P PA N G+ VT SLYVGDL+ NV DS
Sbjct: 1 MAQVQAPSSHSPPPPAVVNDGAATASATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDS 60
Query: 47 QLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVM 106
QLYD F +V QVVSVRVCRD AT SLGYGYVN++N DA +A+ LN++ +N K IR+
Sbjct: 61 QLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRIT 120
Query: 107 YSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQ 166
YS RD S+R+SG N+F+KNLDK++D+K LH+ FS G I+SCK+ATD GQS+GYGFVQ
Sbjct: 121 YSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQ 180
Query: 167 FEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDD 226
F+ EDSA+NAI+KLNG ++NDKQ+FVG FLRK++R++ K KF NVYVKNLSE+ T+D+
Sbjct: 181 FDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDE 240
Query: 227 LKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKA 286
LK FG YG+I+SAV+MRD DG+S+CFGFVNFEN EDAA+AVEALNGKK DD+EWYVGKA
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Query: 287 QKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKV 346
QKKSERE EL R+EQ + +KF GLNLY+KNLDD++TDEKL+E+F+EFGTITS KV
Sbjct: 301 QKKSERELELSRRYEQGSSDG-GNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKV 359
Query: 347 CTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKE 406
MRDP+G S+GSGFVAFS EASR L EMNGKM+ KPLYVA+AQRKE
Sbjct: 360 ------------MRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKE 407
Query: 407 DRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQ 466
+RRA+LQAQFSQMRP A P V PRMP++ G PGLGQQ YGQGPP ++P Q GFGYQ
Sbjct: 408 ERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQP 466
Query: 467 QLVPGMRPG--GGPMPSYFVPMVQQGQQGQRPGGRRGGPG---QQPPQQVPMMQQQMLPR 521
QLVPGMRP GG PM+Q GQQG RPGGRR G G Q Q +P MQ QM+PR
Sbjct: 467 QLVPGMRPAFFGG-------PMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPR 519
Query: 522 QRVYRYPPGRSNIQDAPVQNIGGGM--MSYDMGGLPLRDVVPPMPIHALATALANAPPEQ 579
R YRYP G N+ D P+ GGM ++YDM +P PM LAT+LANA P Q
Sbjct: 520 GRGYRYPSGGRNMPDGPMP---GGMVPVAYDMNVMPYSQ---PMSAGQLATSLANATPAQ 573
Query: 580 QRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNV 639
QRT+LGE+LYPLVDQ+E + AAKVTGMLLEMDQ EVLHL+ESP+AL AKV+EA++VLRNV
Sbjct: 574 QRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNV 633
Query: 640 SQ-----QQGN---SPADQLASLSLND 658
+Q +GN SP+D LASLS+ND
Sbjct: 634 NQPSSQGSEGNKSGSPSDLLASLSIND 660
>gb|AAK25927.1| putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 781 bits (2017), Expect = 0.0
Identities = 416/687 (60%), Positives = 500/687 (72%), Gaps = 56/687 (8%)
Query: 1 MAQIQVQHQTPAPVPAPSN----------GVVPNVANQFVT----TSLYVGDLEVNVNDS 46
MAQ+Q P PA N G+ VT SLYVGDL+ NV DS
Sbjct: 1 MAQVQAPSSHSPPPPAVVNDGAATASATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDS 60
Query: 47 QLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVM 106
QLYD F +V QVVSVRVCRD AT SLGYGYVN++N DA +A+ LN++ +N K IR+
Sbjct: 61 QLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRIT 120
Query: 107 YSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQ 166
YS RD S+R+SG N+F+KNLDK++D+K LH+ FS G I+SCK+ATD GQS+GYGFVQ
Sbjct: 121 YSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQ 180
Query: 167 FEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDD 226
F+ EDSA+NAI+KLNG ++NDKQ+FVG FLRK++R++ K KF NVYVKNLSE+ T+D+
Sbjct: 181 FDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDE 240
Query: 227 LKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKA 286
LK FG YG+I+SAV+MRD DG+S+CFGFVNFEN EDAA+AVEALNGKK DD+EWYVGKA
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Query: 287 QKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKV 346
QKKSERE EL R+EQ + +KF GLNLY+KNLDD++TDEKL+E+F+EFGTITS KV
Sbjct: 301 QKKSERELELSRRYEQGSSDG-GNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKV 359
Query: 347 CTMILFTDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKE 406
MRDP+G S+GSGFVAFS EASR L EMNGKM+ KPLYVA+AQRKE
Sbjct: 360 ------------MRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKE 407
Query: 407 DRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQ 466
+RRA+LQAQFSQMRP A P V PRMP++ G PGLGQQ YGQGPP ++P Q GFGYQ
Sbjct: 408 ERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQP 466
Query: 467 QLVPGMRPG--GGPMPSYFVPMVQQGQQGQRPGGRRGGPG---QQPPQQVPMMQQQMLPR 521
QLVPGMRP GG PM+Q GQQG RPGGRR G G Q Q +P MQ QM+PR
Sbjct: 467 QLVPGMRPAFFGG-------PMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPR 519
Query: 522 QRVYRYPPGRSNIQDAPVQNIGGGM--MSYDMGGLPLRDVVPPMPIHALATALANAPPEQ 579
R YRYP G N+ D P+ GGM ++YDM +P PM LAT+LANA P Q
Sbjct: 520 GRGYRYPSGGRNMPDGPMP---GGMVPVAYDMNVMPYSQ---PMSAGQLATSLANATPAQ 573
Query: 580 QRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNV 639
QRT+LGE+LYPLVDQ+E + AAKVTGMLLEMDQ EVLHL+ESP+AL AKV+EA++VLRNV
Sbjct: 574 QRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNV 633
Query: 640 SQ--------QQGNSPADQLASLSLND 658
+Q + SP+D LASLS+ND
Sbjct: 634 NQPSSQGSDGNKSGSPSDLLASLSIND 660
>gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 734 bits (1895), Expect = 0.0
Identities = 375/492 (76%), Positives = 425/492 (86%), Gaps = 21/492 (4%)
Query: 173 AQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFG 232
AQ AIDKLNGML+NDKQV+VGHFLRKQ+R++ TKF NVYVKNLSES T+D LK FG
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 233 AYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSER 292
+G ITSAV+MRDADG+SKCFGF+NFE AEDAAKAVE+LNGKK DD+EWYVGKAQKKSER
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 293 EQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILF 352
EQELK +FEQT KE+V DK+QGLNLY+KNLDD+I DEKLKE+FSEFGTITS KV
Sbjct: 121 EQELKSKFEQTAKEAV-DKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKV------ 173
Query: 353 TDIRVIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARL 412
MRDP+G+SRGSGFVAFST EEASRAL EMNGKMIVSKPLYVA+AQRKE+RRA+L
Sbjct: 174 ------MRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKL 227
Query: 413 QAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGM 472
+AQFSQ+RPVA+ PS+APRMP+YPPG PG+GQQ YGQGPPAM+PPQAGFGYQQQLVPGM
Sbjct: 228 RAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPAMIPPQAGFGYQQQLVPGM 287
Query: 473 RPGGGPMPSYFVPMVQQGQQGQRPGGRRG-GPGQQPPQQVPMMQQQMLPRQRVYRYPPGR 531
RPGG PMP++F+P+VQQGQQGQRPGGRRG GP QQ Q +P+MQQQMLPR R+YRYPPGR
Sbjct: 288 RPGGAPMPNFFMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGR 347
Query: 532 SNIQDAPVQNIGGGMMS--YDMGGLPLRD--VVPPMPIHALATALANAPPEQQRTMLGEA 587
N + P+ + GGM+S YDMGG+ RD + PMPI LA+ALANAPPEQQRTMLGE+
Sbjct: 348 -NGPEGPMPGVPGGMLSVPYDMGGMLPRDSAMGQPMPISTLASALANAPPEQQRTMLGES 406
Query: 588 LYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSP 647
LYPLVDQLEH+ AAKVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAMEVLRNV QQ +P
Sbjct: 407 LYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV--QQTTNP 464
Query: 648 ADQLASLSLNDS 659
ADQLASLSLND+
Sbjct: 465 ADQLASLSLNDN 476
Score = 146 bits (369), Expect = 2e-33
Identities = 82/234 (35%), Positives = 129/234 (55%), Gaps = 18/234 (7%)
Query: 86 AARALDVLNFTPMNNKSIRVMY----SHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFS 141
A A+D LN MN+K + V + R+ ++ + N+++KNL ++ L F
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDGLKKVFG 60
Query: 142 SFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDR 201
FG I S + D G+SK +GF+ FE + A A++ LNG +DK+ +VG +K +R
Sbjct: 61 EFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSER 120
Query: 202 DNVLSKTKFN-------------NVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADG 248
+ L K+KF N+YVKNL ++ ++ LK F +GTITS +MRD G
Sbjct: 121 EQEL-KSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSG 179
Query: 249 RSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ 302
S+ GFV F +E+A++A+ +NGK + + YV AQ+K ER +L+ +F Q
Sbjct: 180 ISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQ 233
Score = 104 bits (260), Expect = 8e-21
Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 17/185 (9%)
Query: 33 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDV 92
++YV +L + D L +F + G + S V RD A +S +G++NF +DAA+A++
Sbjct: 40 NVYVKNLSESTTDDGLKKVFGEFGNITSAVVMRD-ADGKSKCFGFINFETAEDAAKAVES 98
Query: 93 LNFTPMNNKSIRVMYSHR------DPSSRKSGTA----------NIFIKNLDKTIDHKAL 136
LN ++K V + + + S+ TA N+++KNLD TID + L
Sbjct: 99 LNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKL 158
Query: 137 HDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFL 196
+ FS FG I SCK+ D SG S+G GFV F + A A+ ++NG +I K ++V
Sbjct: 159 KELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQ 218
Query: 197 RKQDR 201
RK++R
Sbjct: 219 RKEER 223
Score = 48.1 bits (113), Expect = 9e-04
Identities = 27/83 (32%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
Query: 33 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDV 92
+LYV +L+ ++D +L +LF++ G + S +V RD + S G G+V F+ ++A+RAL
Sbjct: 143 NLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRD-PSGISRGSGFVAFSTSEEASRALSE 201
Query: 93 LNFTPMNNKSIRVMYSHRDPSSR 115
+N + +K + V + R R
Sbjct: 202 MNGKMIVSKPLYVALAQRKEERR 224
>emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
gi|480602|pir||S37085 polyadenylate-binding protein -
fern (Anemia phyllitidis)
Length = 638
Score = 724 bits (1870), Expect = 0.0
Identities = 392/666 (58%), Positives = 485/666 (71%), Gaps = 38/666 (5%)
Query: 1 MAQIQVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVS 60
MAQ+ Q P + P +G P +V SLYVGDL+ +V++S+LY++FNQ+GQVVS
Sbjct: 1 MAQVMQAQQAPT-IATPISGSSP-----YVAPSLYVGDLDPDVSESELYEVFNQIGQVVS 54
Query: 61 VRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTA 120
+RVCRDL T++SLGY YVN+ QDA++AL++LNFT + K IR+MYSHRDPS RKSG A
Sbjct: 55 IRVCRDLMTKKSLGYAYVNYGTHQDASQALELLNFTLVKGKPIRIMYSHRDPSIRKSGAA 114
Query: 121 NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180
NIFIKNL+K+ID+KALHDTFS+FG I+SC++ D +G SKGYGFVQFE E+SAQ AI+K+
Sbjct: 115 NIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKV 174
Query: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSA 240
NGMLIND+QV V F+RKQ+RD SK FNNVYVKNL+E+ T++DL+ F +G I+SA
Sbjct: 175 NGMLINDRQVSVAPFIRKQERDMASSK-NFNNVYVKNLAEATTDEDLRKVFAGFGPISSA 233
Query: 241 VLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRF 300
V+MRDADG+SKCFGFVNFEN +DAA AVE LNGK ++++EWYVG+AQKKSERE ELK +F
Sbjct: 234 VVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKF 293
Query: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMR 360
EQ KE +KFQG+NLYLKN+DDSI DEKL+E+F+ FGT+TS KV M+
Sbjct: 294 EQVRKEK-EEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKV------------MK 340
Query: 361 DPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMR 420
P G S GSGFV FS PEEA +A+ +MNGKM+ SKPLYVA+AQRKE+RRARLQAQF+QM+
Sbjct: 341 SPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQAQFAQMQ 400
Query: 421 PVA-ITPSVAPRMP-LYPPGTPGLGQQFMYGQGPPAMMPPQA-GFGYQQQLVPGMRPGGG 477
VA P +AP P +Y PG G+G Q YGQ P ++P QA GFGYQQ +VP MRP
Sbjct: 401 IVAPNAPPMAPNPPSMYHPGPQGMGHQMFYGQPAPGLLPSQANGFGYQQPMVPTMRPTSA 460
Query: 478 PMPSYFVPMVQQGQQGQRPGGRRGGPGQ-QPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
+P+YF+P+ + GQQ QRP RRGG G QP P QQ R RY + D
Sbjct: 461 GVPNYFMPVQRPGQQIQRPVNRRGGVGPLQPQHHQPPPQQFPRGGNRSMRYSQFSRTMPD 520
Query: 537 APVQNIG--GGMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQ 594
+ +Q G G + ++G +P ALA+ALA+A PE+QR MLGE LYPLVD+
Sbjct: 521 STMQGFGMMGAANASNIGLMP-----------ALASALASASPEEQRVMLGEQLYPLVDR 569
Query: 595 LEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQ-QGNSPADQLAS 653
LEHD A KVTGMLLEMDQPEVLHLI+ LKAKVAEAM+VLR NSP DQLAS
Sbjct: 570 LEHDHAGKVTGMLLEMDQPEVLHLIDLLRQLKAKVAEAMDVLRMAQGSISSNSPLDQLAS 629
Query: 654 LSLNDS 659
LSL +S
Sbjct: 630 LSLTES 635
>gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 456
Score = 617 bits (1591), Expect = e-175
Identities = 315/453 (69%), Positives = 372/453 (81%), Gaps = 19/453 (4%)
Query: 15 PAPSNGVVPN-----VANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLAT 69
P +NGVV A F TSLYVGDL+V+V D+QL+D+F+QVG VVSVRVCRD+ T
Sbjct: 17 PPQANGVVAAGSAAAAAATFQATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNT 76
Query: 70 RRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDK 129
R SLGY YVNF++P DAARAL++LNFTP+N K IR+MYS+RDPSSRKSG ANIFIKNLDK
Sbjct: 77 RLSLGYAYVNFSSPADAARALEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDK 136
Query: 130 TIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQ 189
+ID+KAL+DTFS FG I+SCK+AT+ SG+SKGYGFVQFE E++AQNAI KLNGML+NDK+
Sbjct: 137 SIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKK 196
Query: 190 VFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGR 249
V+VG F+RKQ+R+NV KFNNVYVKNLSES TED+LK FG +G ITS V+MR+ DG+
Sbjct: 197 VYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGK 256
Query: 250 SKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQTVKESVV 309
S+CFGFVNFEN +DAA+AVE LNGKK DD+EWYV +AQKKSERE ELK +FE+ +KE+
Sbjct: 257 SRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEA-A 315
Query: 310 DKFQGLNLYLKNLDDSI-TDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDPNGVSRG 368
DK QG NLYLKNLDDSI DEKLKE+F++FGTITS KV MRD NGVS+G
Sbjct: 316 DKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKV------------MRDLNGVSKG 363
Query: 369 SGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSV 428
SGFVAF + E+ASRAL MNGKMI SKPLYVA+AQRKE+RRARLQAQFSQMRP+ + PSV
Sbjct: 364 SGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQMRPMVMPPSV 423
Query: 429 APRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAG 461
APRMP+YPPG PG+GQQ YGQ PPA + PQ G
Sbjct: 424 APRMPMYPPGVPGVGQQLFYGQPPPAFVNPQLG 456
>ref|NP_195137.2| polyadenylate-binding protein 2 (PABP2) [Arabidopsis thaliana]
Length = 443
Score = 609 bits (1571), Expect = e-173
Identities = 316/476 (66%), Positives = 376/476 (78%), Gaps = 34/476 (7%)
Query: 183 MLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVL 242
ML+NDKQV+VG FLR+Q+RD+ +KTKF NVYVKNL+ES T+DDLKN FG YG ITSAV+
Sbjct: 1 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 60
Query: 243 MRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ 302
M+D +G+SK FGFVNFENA+DAA+AVE+LNG K DD+EWYVG+AQKKSERE EL+ R+EQ
Sbjct: 61 MKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 120
Query: 303 TVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDP 362
+KE+ DKFQ NLY+KNLD SI+DEKLKE+FS FGT+TS KV MRDP
Sbjct: 121 NLKEAA-DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKV------------MRDP 167
Query: 363 NGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPV 422
NG S+GSGFVAF+TPEEA+ A+ +++GKMI SKPLYVA+AQRKEDRR RLQAQFSQ+RPV
Sbjct: 168 NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPV 227
Query: 423 AITPSVAPRMPLYPPGTPGLGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSY 482
A+ PSV PRMP+YPPG PG+GQQ YGQ PPAM+PPQ G+GYQQQLVPGMRPGGGP+PS+
Sbjct: 228 AMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSF 287
Query: 483 FVPMVQQGQQGQRP-GGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQDAPVQN 541
F+PMVQ Q QRP GGRR G Q QQ PMMQQQM PR R++RYP GR D P +
Sbjct: 288 FMPMVQ--PQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYD 345
Query: 542 IGGGMMSYDMGGLPLRDVVPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAA 601
+G M P+ I ALA+ L+NA PEQQRTMLGE LYPLV+Q+E +SAA
Sbjct: 346 MGNNM---------------PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAA 390
Query: 602 KVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGNSPADQLASLSLN 657
KVTGMLLEMDQ EVLHL+ESP+ALKAKVAEAM+VLR+V+ +QLASL+L+
Sbjct: 391 KVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 443
Score = 148 bits (374), Expect = 5e-34
Identities = 79/221 (35%), Positives = 126/221 (56%), Gaps = 16/221 (7%)
Query: 98 MNNKSIRV----MYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIAT 153
+N+K + V RD ++ K+ N+++KNL ++ L + F +G+I S +
Sbjct: 3 LNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMK 62
Query: 154 DGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL-------- 205
DG G+SKG+GFV FE D A A++ LNG +DK+ +VG +K +R+ L
Sbjct: 63 DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNL 122
Query: 206 ----SKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENA 261
K + +N+YVKNL S +++ LK F +GT+TS+ +MRD +G SK GFV F
Sbjct: 123 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 182
Query: 262 EDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ 302
E+A +A+ L+GK ++ + YV AQ+K +R L+ +F Q
Sbjct: 183 EEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ 223
Score = 110 bits (275), Expect = 1e-22
Identities = 68/206 (33%), Positives = 111/206 (53%), Gaps = 18/206 (8%)
Query: 24 NVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNP 83
+ AN+ T++YV +L + D L + F + G++ S V +D +S G+G+VNF N
Sbjct: 21 STANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENA 79
Query: 84 QDAARALDVLNFTPMNNK---------------SIRVMYSHR-DPSSRKSGTANIFIKNL 127
DAARA++ LN ++K +RV Y ++ K ++N+++KNL
Sbjct: 80 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 139
Query: 128 DKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLIND 187
D +I + L + FS FG + S K+ D +G SKG GFV F + A A+ +L+G +I
Sbjct: 140 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 199
Query: 188 KQVFVGHFLRKQDRDNVLSKTKFNNV 213
K ++V RK+DR V + +F+ V
Sbjct: 200 KPLYVAIAQRKEDR-RVRLQAQFSQV 224
>emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15219945|ref|NP_173690.1| polyadenylate-binding
protein 3 (PABP3) [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to
poly(A)-binding protein (PABP5) [Arabidopsis thaliana]
gi|12643628|sp|O64380|PABP3_ARATH Polyadenylate-binding
protein 3 (Poly(A)-binding protein 3) (PABP 3)
Length = 660
Score = 607 bits (1565), Expect = e-172
Identities = 346/647 (53%), Positives = 438/647 (67%), Gaps = 40/647 (6%)
Query: 5 QVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVC 64
Q Q P +P PS VV + + +SLY GDL+ V ++ L+DLF V VVSVRVC
Sbjct: 24 QTSVQVPVSIPLPSPVVVADQTHP--NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVC 81
Query: 65 RDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFI 124
RD RRSLGY Y+NF+NP DA RA++ LN+TP+ ++ IR+M S+RDPS+R SG NIFI
Sbjct: 82 RD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFI 140
Query: 125 KNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGML 184
KNLD +ID+KAL +TFSSFG I+SCK+A D +G+SKGYGFVQFE E+SAQ AIDKLNGML
Sbjct: 141 KNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGML 200
Query: 185 INDKQVFVGHFLRKQD--RDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVL 242
+NDKQVFVGHF+R+Q+ RD +F NVYVKNL + ED+L+ FG +G I+SAV+
Sbjct: 201 MNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVV 260
Query: 243 MRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ 302
MRD G S+CFGFVNFE E AA AVE +NG + D+ YVG+AQKKSERE+EL+ +FEQ
Sbjct: 261 MRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
Query: 303 TVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDP 362
+ + +K QG NLYLKNLDDS+ DEKLKEMFSE+G +TS KV M +P
Sbjct: 321 E-RINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKV------------MLNP 367
Query: 363 NGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPV 422
G+SRG GFVA+S PEEA RAL EMNGKMI KPLY+A+AQRKEDRRA LQA FSQ+R
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP 427
Query: 423 AITPSVAPRMPLYPPG--TPGLGQQFMYGQGPPAMMPPQ-AGFGYQQQLVPGMRPGGGPM 479
+PPG PG Q GQ +M+P Q G+G+Q Q +PGMRPG GP
Sbjct: 428 GPMSGFH-----HPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP- 481
Query: 480 PSYFV--PMVQQGQQGQRPGGRRGGPG-QQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
++ V P+ +Q Q G R G RRG QQ QQ +M + P RY G SN ++
Sbjct: 482 GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGM---RYMNGASNGRN 538
Query: 537 APVQNIGGGMMSYDMGGLPL------RDVVPPMPIHALATALANAPPEQQRTMLGEALYP 590
++ G++ + LP+ P +PI L ++LA+A P + MLGE LYP
Sbjct: 539 GMDSSVPQGILP-PIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYP 597
Query: 591 LVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
LV++ E AKVTGMLLEMDQ E+LHL+ESP+ALK+KV+EA++VLR
Sbjct: 598 LVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>gb|AAG02117.1| poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 607 bits (1565), Expect = e-172
Identities = 346/647 (53%), Positives = 438/647 (67%), Gaps = 40/647 (6%)
Query: 5 QVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVC 64
Q Q P +P PS VV + + +SLY GDL+ V ++ L+DLF V VVSVRVC
Sbjct: 24 QTSVQVPVSIPLPSPVVVADQTHP--NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVC 81
Query: 65 RDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFI 124
RD RRSLGY Y+NF+NP DA RA++ LN+TP+ ++ IR+M S+RDPS+R SG NIFI
Sbjct: 82 RD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFI 140
Query: 125 KNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGML 184
KNLD +ID+KAL +TFSSFG I+SCK+A D +G+SKGYGFVQFE E+SAQ AIDKLNGML
Sbjct: 141 KNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGML 200
Query: 185 INDKQVFVGHFLRKQD--RDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVL 242
+NDKQVFVGHF+R+Q+ RD +F NVYVKNL + ED+L+ FG +G I+SAV+
Sbjct: 201 MNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVV 260
Query: 243 MRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ 302
MRD G S+CFGFVNFE E AA AVE +NG + D+ YVG+AQKKSERE+EL+ +FEQ
Sbjct: 261 MRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
Query: 303 TVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDP 362
+ + +K QG NLYLKNLDDS+ DEKLKEMFSE+G +TS KV M +P
Sbjct: 321 E-RINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKV------------MLNP 367
Query: 363 NGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPV 422
G+SRG GFVA+S PEEA RAL EMNGKMI KPLY+A+AQRKEDRRA LQA FSQ+R
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAP 427
Query: 423 AITPSVAPRMPLYPPG--TPGLGQQFMYGQGPPAMMPPQ-AGFGYQQQLVPGMRPGGGPM 479
+PPG PG Q GQ +M+P Q G+G+Q Q +PGMRPG GP
Sbjct: 428 GPMSGFH-----HPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP- 481
Query: 480 PSYFVP--MVQQGQQGQRPGGRRGGPG-QQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQD 536
++ VP + +Q Q G R G RRG QQ QQ +M + P RY G SN ++
Sbjct: 482 GNFIVPYSLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGM---RYMNGASNGRN 538
Query: 537 APVQNIGGGMMSYDMGGLPL------RDVVPPMPIHALATALANAPPEQQRTMLGEALYP 590
++ G++ + LP+ P +PI L ++LA+A P + MLGE LYP
Sbjct: 539 GMDSSVPQGILP-PIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYP 597
Query: 591 LVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
LV++ E AKVTGMLLEMDQ E+LHL+ESP+ALK+KV+EA++VLR
Sbjct: 598 LVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>ref|NP_177322.1| polyadenylate-binding protein 5 (PABP5) [Arabidopsis thaliana]
gi|7239504|gb|AAF43230.1| Identical to the
polyadenylate-binding protein 5 (PAB5) from Arabidopsis
thaliana gb|M97657 gi|21542448|sp|Q05196|PABP5_ARATH
Polyadenylate-binding protein 5 (Poly(A)-binding protein
5) (PABP 5)
Length = 668
Score = 597 bits (1540), Expect = e-169
Identities = 345/673 (51%), Positives = 447/673 (66%), Gaps = 46/673 (6%)
Query: 12 APVPAPSNGVVPNVA---------NQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVR 62
AP P P+ V VA +SLYVGDL+ +VN+S L DLFNQV V ++R
Sbjct: 16 APPPFPAVSQVAAVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLR 75
Query: 63 VCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANI 122
VCRDL T RSLGY YVNF NP+DA+RA++ LN+ P+ ++ IR+M S+RDPS+R SG N+
Sbjct: 76 VCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNV 134
Query: 123 FIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNG 182
FIKNLD +ID+KAL++TFSSFG I+SCK+A D G+SKGYGFVQFE E++AQ AIDKLNG
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194
Query: 183 MLINDKQVFVGHFLRKQDRDNVLSKT--KFNNVYVKNLSESFTEDDLKNEFGAYGTITSA 240
ML+NDKQVFVGHF+R+QDR S F NVYVKNL + T+D+LK FG YG I+SA
Sbjct: 195 MLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSA 254
Query: 241 VLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRF 300
V+M+D G S+ FGFVNF + E AA AVE +NG + ++ YVG+AQKKS+RE+EL+ +F
Sbjct: 255 VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKF 314
Query: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMR 360
EQ + S +K QG NLYLKNLDDS+ DEKLKEMFSE+G +TS KV M
Sbjct: 315 EQE-RISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKV------------MM 361
Query: 361 DPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMR 420
+ G+SRG GFVA+S PEEA A+ EMNGKMI KPLYVA+AQRKE+R+A LQ+ F+Q+R
Sbjct: 362 NSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIR 421
Query: 421 -PVAITPSVAPRMPL--YPPGTP--GLGQQFMYGQGPPAMMPPQ-AGFGYQQQLVPGMRP 474
P ++P +P +PPG P G G ++P Q G+GYQ Q +PGMRP
Sbjct: 422 SPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMPGMRP 481
Query: 475 GGGPMPSYFV--PMVQQGQQGQRPGGRRGGPGQQPPQQVPMMQQQMLPRQRVYRYPPGRS 532
G GP P++ + P+ +Q Q G R G RRG Q QQQ + +Q R+ G
Sbjct: 482 GAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQ-----QQFQQQQMLQQNASRFMGGAG 535
Query: 533 NIQDAPVQNIGGGMM------SYDMGGLPLRDVVP-PMPIHALATALANAPPEQQRTMLG 585
N ++ + G++ S + P R P P+ I LA+ LA A P++ MLG
Sbjct: 536 NRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLG 595
Query: 586 EALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVSQQQGN 645
+ LYPLV+Q E +AAKVTGMLLEMDQ E+LHL+ESP+ALKAKV+EA++VLR +
Sbjct: 596 DHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAV 655
Query: 646 SPADQLASLSLND 658
S D +LS ++
Sbjct: 656 SSVDDQFALSSSE 668
>gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana. [Arabidopsis thaliana]
Length = 655
Score = 596 bits (1537), Expect = e-169
Identities = 342/648 (52%), Positives = 435/648 (66%), Gaps = 47/648 (7%)
Query: 5 QVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVC 64
Q Q P +P PS VV + + +SLY GDL+ V ++ L+DLF V VVSVRVC
Sbjct: 24 QTSVQVPVSIPLPSPVVVADQTHP--NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVC 81
Query: 65 RDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFI 124
RD RRSLGY Y+NF+NP DA RA++ LN+TP+ ++ IR+M S+RDPS+R SG NIFI
Sbjct: 82 RD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFI 140
Query: 125 KNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGML 184
KNLD +ID+KAL +TFSSFG I+SCK+A D +G+SKGYGFVQFE E+SAQ AIDKLNGML
Sbjct: 141 KNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGML 200
Query: 185 INDKQVFVGHFLRKQD--RDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVL 242
+NDKQVFVGHF+R+Q+ RD +F NVYVKNL + ED+L+ FG +G I+SAV+
Sbjct: 201 MNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVV 260
Query: 243 MRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDEEWYVGKAQKKSEREQELKGRFEQ 302
MRD G S+CFGFVNFE E AA AVE +NG + D+ YVG+AQKKSERE+EL+ +FEQ
Sbjct: 261 MRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
Query: 303 TVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKVCTMILFTDIRVIMRDP 362
+ + +K QG NLYLKNLDDS+ DEKLKEMFSE+G +TS KV M +P
Sbjct: 321 E-RINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKV------------MLNP 367
Query: 363 NGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPV 422
G+SRG GFVA+S PEEA RAL EMNGKMI KPLY+A+AQRKEDRRA LQ +
Sbjct: 368 QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQIR------- 420
Query: 423 AITPSVAPRMPL-YPPG--TPGLGQQFMYGQGPPAMMPPQ-AGFGYQQQLVPGMRPGGGP 478
+ P +PPG PG Q GQ +M+P Q G+G+Q Q +PGMRPG GP
Sbjct: 421 ----APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP 476
Query: 479 MPSYFV--PMVQQGQQGQRPGGRRGGPG-QQPPQQVPMMQQQMLPRQRVYRYPPGRSNIQ 535
++ V P+ +Q Q G R G RRG QQ QQ +M + P RY G SN +
Sbjct: 477 -GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGM---RYMNGASNGR 532
Query: 536 DAPVQNIGGGMMSYDMGGLPL------RDVVPPMPIHALATALANAPPEQQRTMLGEALY 589
+ ++ G++ + LP+ P +PI L ++LA+A P + MLGE LY
Sbjct: 533 NGMDSSVPQGILP-PIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLY 591
Query: 590 PLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMEVLR 637
PLV++ E AKVTGMLLEMDQ E+LHL+ESP+ALK+KV+EA++VLR
Sbjct: 592 PLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 639
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,159,053,607
Number of Sequences: 2540612
Number of extensions: 54690737
Number of successful extensions: 238276
Number of sequences better than 10.0: 6920
Number of HSP's better than 10.0 without gapping: 3557
Number of HSP's successfully gapped in prelim test: 3471
Number of HSP's that attempted gapping in prelim test: 191329
Number of HSP's gapped (non-prelim): 28150
length of query: 659
length of database: 863,360,394
effective HSP length: 135
effective length of query: 524
effective length of database: 520,377,774
effective search space: 272677953576
effective search space used: 272677953576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)
Medicago: description of AC148486.10