BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148485.4 - phase: 0
(449 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_470716.1| putative polypyrimidine tract-binding protein [... 570 e-161
ref|XP_482574.1| putative polypyrimidine tract-binding protein h... 563 e-159
gb|AAF26159.1| putative polypyrimidine tract-binding protein [Ar... 561 e-158
gb|AAC62015.1| polypyrimidine tract-binding protein homolog [Ara... 552 e-156
gb|AAV59265.1| At5g53180 [Arabidopsis thaliana] gi|53749130|gb|A... 515 e-144
dbj|BAD61523.1| polypyrimidine tract-binding protein 1-like [Ory... 476 e-133
ref|NP_917711.1| putative polypyrimidine tract-binding protein [... 420 e-116
dbj|BAD61524.1| polypyrimidine tract-binding protein-like [Oryza... 295 2e-78
gb|AAM13217.1| putative polypyrimidine tract-binding protein [Ar... 286 7e-76
gb|AAT70479.1| At1g43190 [Arabidopsis thaliana] gi|22329999|ref|... 157 5e-37
emb|CAD70621.1| polypyrimidine track-binding protein homologue [... 154 4e-36
gb|AAH91854.1| Unknown (protein for IMAGE:7152787) [Danio rerio] 142 2e-32
ref|NP_071961.1| polypyrimidine tract binding protein 1 isoform ... 142 2e-32
gb|AAH61858.1| Ptbp1 protein [Rattus norvegicus] 139 1e-31
ref|NP_001018313.1| hypothetical protein LOC323490 [Danio rerio]... 139 1e-31
sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 (PTB)... 139 1e-31
ref|NP_999396.1| polypyrimidine tract-binding protein [Sus scrof... 139 2e-31
emb|CAA52653.1| polypyrimidine tract binding protein [Rattus nor... 138 3e-31
gb|AAP35465.1| polypyrimidine tract binding protein 1 [Homo sapi... 137 7e-31
gb|AAP36157.1| Homo sapiens polypyrimidine tract binding protein... 137 7e-31
>ref|XP_470716.1| putative polypyrimidine tract-binding protein [Oryza sativa]
gi|18921326|gb|AAL82531.1| putative polypyrimidine
tract-binding protein [Oryza sativa]
Length = 464
Score = 570 bits (1468), Expect = e-161
Identities = 290/455 (63%), Positives = 345/455 (75%), Gaps = 34/455 (7%)
Query: 8 QQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELNQ 67
QQFR TQ PSKVLH RNLPWEC++EEL +LC+PFG++++TKC VG N+NQAFV+F ++NQ
Sbjct: 11 QQFRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQ 70
Query: 68 AISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEAGDVSI 127
AISMVSY+ASSSEPAQ+RGKTVYIQYSNR IVN+ SPG+ GNVLLVTIEGV+A DV+I
Sbjct: 71 AISMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTIEGVQANDVTI 130
Query: 128 DVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGA 187
DVIHLVFSAFGFVHK+ATFEK AGFQALIQYTDA TA++A+++LDGRSIPRYLLPEHV +
Sbjct: 131 DVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPRYLLPEHVTS 190
Query: 188 CNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVLL 247
C LRIS+SAH+DLNIKFQS+RSRDYTNP LPVN +AID+ LQPA+G DG++ E + NVLL
Sbjct: 191 CCLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDT-LQPAVGADGRKVEAEGNVLL 249
Query: 248 ATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHC 307
A+IENMQYAV +DVLH+VFSAFG VQK+A+F+KNG T ALIQYPD+T A+ AKE LEGHC
Sbjct: 250 ASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHC 309
Query: 308 IYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAP--------AWQ-TTQA 358
IYDGGYCKLHL+YSRHTDLNVKA SDKSRDYT+ ++ A P WQ QA
Sbjct: 310 IYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIPQGAMQAVPQPPGVPTTSAGWQGNPQA 369
Query: 359 ATMYS---------GSMGQMPSWDPNQQEVTQSYLSAPGTFPSGQAAPPFP-----GYSP 404
Y+ G+ GQ+P+W+P Y APG +P + P G+S
Sbjct: 370 GGAYAPPGAAAPNHGTTGQVPNWNPG----NSGYAPAPGAYPGQMYSSPMQYGASGGFSA 425
Query: 405 AAVPPAGASPHSHMPPSSF------AGAFPGSQPH 433
A PP MPP + AGA QPH
Sbjct: 426 PAAPPQELHTSQQMPPPQYGNQPGPAGAPGTGQPH 460
>ref|XP_482574.1| putative polypyrimidine tract-binding protein homolog [Oryza sativa
(japonica cultivar-group)] gi|42407521|dbj|BAD10638.1|
putative polypyrimidine tract-binding protein homolog
[Oryza sativa (japonica cultivar-group)]
Length = 461
Score = 563 bits (1452), Expect = e-159
Identities = 291/453 (64%), Positives = 341/453 (75%), Gaps = 29/453 (6%)
Query: 9 QFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELNQA 68
QFR TQ PSKVLH RN+PWEC++EEL +LC PFG+V++T CNVG N+NQAFV+FA+ NQA
Sbjct: 8 QFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQNQA 67
Query: 69 ISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEAGDVSID 128
ISMVSYYASSSEPAQVRGKTVYIQYSNR I N+ GD GNVLLVT EGV+ D+SID
Sbjct: 68 ISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDISID 127
Query: 129 VIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGAC 188
VIHLVFSAFGFVHK+ATFEK AGFQALIQYTDA TA AK+SLDGRSIPRYLLPEHV C
Sbjct: 128 VIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHVPTC 187
Query: 189 NLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVLLA 248
+LRI++SAH+DLNIKFQS+RSRDYTNP LPVN AI+ QP +GPDGK KE +SNVLLA
Sbjct: 188 HLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPTLGPDGKIKEPESNVLLA 247
Query: 249 TIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCI 308
+IENMQYAV +DVLH+VFSAFG VQK+AMF+KNG ALIQYPD+T AA AK+ LEGHCI
Sbjct: 248 SIENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEGHCI 307
Query: 309 YDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTV-LDPSLH---AAQAP-------AWQTTQ 357
YDGGYCKLHL+YSRHTDLNVKA ++SRDYTV DPS AAQAP AWQ T
Sbjct: 308 YDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVSSDPSAQMQAAAQAPGPSTPGVAWQNTA 367
Query: 358 AATMYSGS------MGQMPSWDPNQQEVTQSYLSAPGTFPSGQ----AAPPFPGYS---- 403
+ + GS +GQ+P+W+PN Q ++ SA +P+ + P +PG
Sbjct: 368 PSASFYGSTAAATPVGQVPAWNPNMQ--AGAFGSASSAYPTQPMMPGSVPHYPGIGSSSG 425
Query: 404 --PAAVPPAGASPHSHMPPSSFAGAFPGSQPHY 434
P + + P +PP++ A P QP Y
Sbjct: 426 ALPVSFQASHQMPQYGVPPAAPHHAPPAGQPMY 458
>gb|AAF26159.1| putative polypyrimidine tract-binding protein [Arabidopsis
thaliana] gi|15232047|ref|NP_186764.1| polypyrimidine
tract-binding protein, putative / heterogeneous nuclear
ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 399
Score = 561 bits (1445), Expect = e-158
Identities = 287/412 (69%), Positives = 328/412 (78%), Gaps = 27/412 (6%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
SS Q QFR TQ PSKV+H RNLPWEC +EEL DLC FGK+++TK NVG N+NQAFV+F
Sbjct: 2 SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
A+LNQAISMVSYYASSSEPAQ+RGKTVYIQYSNRH IVN+ SPGD+PGNVLLVT EGVE+
Sbjct: 62 ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121
Query: 123 GDVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLP 182
+VSIDVIHLVFSAFGFVHK+ATFEK AGFQAL+Q+TD ETA++A+ +LDGRSIPRYLL
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLS 181
Query: 183 EHVGACNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHK 242
HVG+C+LR+SYSAH DLNIKFQS+RSRDYTNP LPVNQ A+D ++QPA+G DGK+ E +
Sbjct: 182 AHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQ 241
Query: 243 SNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKET 302
SNVLL IENMQYAV +DVLH+VFSA+G VQK+A+F+KNG T ALIQY D+ AA AKE
Sbjct: 242 SNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 301
Query: 303 LEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQ--------AP--A 352
LEGHCIYDGGYCKL L+YSRHTDLNVKAFSDKSRDYT+ D SL AQ AP
Sbjct: 302 LEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAG 361
Query: 353 WQTTQAATMYSGSMG---QMPSWDPNQQEVTQSYLSAPGTFPSGQAAPPFPG 401
WQ QA + YSG G PS DPN G PSGQ PP+ G
Sbjct: 362 WQNPQAQSQYSGYGGSPYMYPSSDPN------------GASPSGQ--PPYYG 399
>gb|AAC62015.1| polypyrimidine tract-binding protein homolog [Arabidopsis thaliana]
gi|11358627|pir||T51814 polypyrimidine tract-binding
protein homolog [imported] - Arabidopsis thaliana
Length = 418
Score = 552 bits (1423), Expect = e-156
Identities = 274/375 (73%), Positives = 314/375 (83%), Gaps = 10/375 (2%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
SS Q QFR TQ PSKV+H RNLPWEC +EEL DLC FGK+++TK NVG N+NQAFV+F
Sbjct: 2 SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
A+LNQAISMVSYYASSSEPAQ+RGKTVYIQYSNRH IVN+ SPGD+PGNVLLVT EGVE+
Sbjct: 62 ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121
Query: 123 GDVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLP 182
+VSIDVIHLVFSAFGFVHK+ATFEK AGFQAL+Q+TD ETA++A+ +LDGRSIPRYLL
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLS 181
Query: 183 EHVGACNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHK 242
HVG+C+LR+SYSAH DLNIKFQS+RSRDYTNP LPVNQ A+D ++QPA+G DGK+ E +
Sbjct: 182 AHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQ 241
Query: 243 SNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKET 302
SNVLL IENMQYAV +DVLH+VFSA+G VQK+A+F+KNG T ALIQY D+ AA AKE
Sbjct: 242 SNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 301
Query: 303 LEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQ--------AP--A 352
LEGHCIYDGGYCKL L+YSRHTDLNVKAFSDKSRDYT+ D SL AQ AP
Sbjct: 302 LEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAG 361
Query: 353 WQTTQAATMYSGSMG 367
WQ QA + YSG G
Sbjct: 362 WQNPQAQSQYSGYGG 376
>gb|AAV59265.1| At5g53180 [Arabidopsis thaliana] gi|53749130|gb|AAU90050.1|
At5g53180 [Arabidopsis thaliana]
gi|9757999|dbj|BAB08421.1| polypyrimidine tract-binding
RNA transport protein-like [Arabidopsis thaliana]
gi|15238677|ref|NP_200130.1| polypyrimidine
tract-binding protein, putative / heterogeneous nuclear
ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 429
Score = 515 bits (1326), Expect = e-144
Identities = 267/435 (61%), Positives = 321/435 (73%), Gaps = 15/435 (3%)
Query: 1 MSSSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFV 60
MSS Q QFR TQ PSKVLH RNLPWEC++EEL +L PFG V++TKCNVG N+NQAF+
Sbjct: 1 MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFI 60
Query: 61 QFAELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGV 120
+F +LNQAI M+SYYASSSEPAQVRGKTVY+QYSNR IVN+ + D+ GNVLLVTIEG
Sbjct: 61 EFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGD 120
Query: 121 EAGDVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYL 180
+A VSIDV+HLVFSAFGFVHK+ TFEKTAG+QAL+Q+TDAETA +AK +LDGRSIPRYL
Sbjct: 121 DARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYL 180
Query: 181 LPEHVGACNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKE 240
L E VG C+L+I+YSAH DL +KFQS+RSRDYTNP LPV +AIDS Q A+G DGK+ E
Sbjct: 181 LAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKME 240
Query: 241 HKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAK 300
+SNVLLA+IENMQYAV LDVLH VF+AFG VQK+AMFDKNG ALIQY D+ A AK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAK 300
Query: 301 ETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAAT 360
E LEGHCIYDGG+CKLH+TYSRHTDL++K +D+SRDYT+ +P + Q P
Sbjct: 301 EALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPVPMPQQP------VQN 354
Query: 361 MYSGSMGQMPSWDPN---QQEVTQSYLSAPGTFPSGQAAPPFPGYSPAAVPPAGASPH-- 415
Y+G+ Q + + QQ+ Q PG G G++ PP+ +S H
Sbjct: 355 PYAGNPQQYHAAGGSHHQQQQQPQGGWVQPG--GQGSMGMGGGGHNHYMAPPSSSSMHQG 412
Query: 416 --SHMPPSSFAGAFP 428
HMPP + G P
Sbjct: 413 PGGHMPPQHYGGPGP 427
>dbj|BAD61523.1| polypyrimidine tract-binding protein 1-like [Oryza sativa (japonica
cultivar-group)]
Length = 554
Score = 476 bits (1224), Expect = e-133
Identities = 259/460 (56%), Positives = 313/460 (67%), Gaps = 41/460 (8%)
Query: 7 QQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELN 66
Q QFR TQ PSKV+H RNLPW+C++EEL +L SPFGKV++TKCNVG N+NQAFV+FA+ N
Sbjct: 5 QPQFRYTQPPSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFADQN 64
Query: 67 QAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEAGDVS 126
QAI+M+SY+ASS+EPAQVRGK VY+QYSNR IVNS S G+ GNVLLV++EGV VS
Sbjct: 65 QAIAMISYFASSAEPAQVRGKNVYLQYSNRQEIVNSKSSGEAAGNVLLVSMEGVLPDAVS 124
Query: 127 IDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVG 186
IDV+HLVFSAFGFV K+ATFEK +G+QALIQ+ D ETA+SAK +LDGR IP YLLPE
Sbjct: 125 IDVLHLVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDV 184
Query: 187 ACNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVL 246
C LRI+YSAH LN+KFQS+RSRDYTNP LPV +AID + GPDGK++E +SNVL
Sbjct: 185 PCTLRINYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGS-----GPDGKKQEAESNVL 239
Query: 247 LATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGH 306
LA++ENMQY V +DVLH VFSAFGFVQK+A+F+KN ALIQYPD+ A AAKE LEGH
Sbjct: 240 LASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGH 299
Query: 307 CIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAATMYSGSM 366
IY+GGYCKLHLT+SRHTDLNVK +++ RDYT + + + Q P+ Q +YSG+
Sbjct: 300 SIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQ-PSILGPQ--PVYSGAY 356
Query: 367 GQMPSWDPNQQEVTQSYLSAPG----------------TFPSGQA----------APP-- 398
PS + L+ PG PSG A PP
Sbjct: 357 NNAPSSATGAVVPPGTTLTPPGAPSHPYTSSEPLPQTPAVPSGGAPLYTSQGILQGPPGV 416
Query: 399 ----FPGYSPAAVPPAGASPHSHMP-PSSFAGAFPGSQPH 433
FPGY PP A H P + PG H
Sbjct: 417 PPAQFPGYGSPQFPPGSAQAQMHQQHPVQGSQQMPGQMNH 456
>ref|NP_917711.1| putative polypyrimidine tract-binding protein [Oryza sativa
(japonica cultivar-group)]
Length = 522
Score = 420 bits (1080), Expect = e-116
Identities = 238/460 (51%), Positives = 289/460 (62%), Gaps = 73/460 (15%)
Query: 7 QQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELN 66
Q QFR TQ PSKV+H RNLPW+C++EEL +L SPFGKV++TKCNVG N+NQAFV+FA+ N
Sbjct: 5 QPQFRYTQPPSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFADQN 64
Query: 67 QAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEAGDVS 126
QAI+M+SY+ASS+EPAQVRGK VY+QYSNR IVNS S G+ GNVLLV++EGV VS
Sbjct: 65 QAIAMISYFASSAEPAQVRGKNVYLQYSNRQEIVNSKSSGEAAGNVLLVSMEGVLPDAVS 124
Query: 127 IDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVG 186
IDV+HLVFSAFGFV K+ATFEK +G+QALIQ+ D ETA+SAK +LDGR IP
Sbjct: 125 IDVLHLVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIP--------- 175
Query: 187 ACNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVL 246
RDYTNP LPV +AID + GPDGK++E +SNVL
Sbjct: 176 -----------------------RDYTNPYLPVAPSAIDGS-----GPDGKKQEAESNVL 207
Query: 247 LATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGH 306
LA++ENMQY V +DVLH VFSAFGFVQK+A+F+KN ALIQYPD+ A AAKE LEGH
Sbjct: 208 LASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGH 267
Query: 307 CIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAATMYSGSM 366
IY+GGYCKLHLT+SRHTDLNVK +++ RDYT + + + Q P+ Q +YSG+
Sbjct: 268 SIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQ-PSILGPQ--PVYSGAY 324
Query: 367 GQMPSWDPNQQEVTQSYLSAPG----------------TFPSGQA----------APP-- 398
PS + L+ PG PSG A PP
Sbjct: 325 NNAPSSATGAVVPPGTTLTPPGAPSHPYTSSEPLPQTPAVPSGGAPLYTSQGILQGPPGV 384
Query: 399 ----FPGYSPAAVPPAGASPHSHMP-PSSFAGAFPGSQPH 433
FPGY PP A H P + PG H
Sbjct: 385 PPAQFPGYGSPQFPPGSAQAQMHQQHPVQGSQQMPGQMNH 424
>dbj|BAD61524.1| polypyrimidine tract-binding protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 448
Score = 295 bits (755), Expect = 2e-78
Identities = 171/334 (51%), Positives = 206/334 (61%), Gaps = 41/334 (12%)
Query: 133 VFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRI 192
VFSAFGFV K+ATFEK +G+QALIQ+ D ETA+SAK +LDGR IP YLLPE C LRI
Sbjct: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
Query: 193 SYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVLLATIEN 252
+YSAH LN+KFQS+RSRDYTNP LPV +AID + GPDGK++E +SNVLLA++EN
Sbjct: 85 NYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGS-----GPDGKKQEAESNVLLASVEN 139
Query: 253 MQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCIYDGG 312
MQY V +DVLH VFSAFGFVQK+A+F+KN ALIQYPD+ A AAKE LEGH IY+GG
Sbjct: 140 MQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGG 199
Query: 313 YCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAATMYSGSMGQMPSW 372
YCKLHLT+SRHTDLNVK +++ RDYT + + + Q P+ Q +YSG+ PS
Sbjct: 200 YCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQ-PSILGPQ--PVYSGAYNNAPSS 256
Query: 373 DPNQQEVTQSYLSAPG----------------TFPSGQA----------APP------FP 400
+ L+ PG PSG A PP FP
Sbjct: 257 ATGAVVPPGTTLTPPGAPSHPYTSSEPLPQTPAVPSGGAPLYTSQGILQGPPGVPPAQFP 316
Query: 401 GYSPAAVPPAGASPHSHMP-PSSFAGAFPGSQPH 433
GY PP A H P + PG H
Sbjct: 317 GYGSPQFPPGSAQAQMHQQHPVQGSQQMPGQMNH 350
Score = 103 bits (258), Expect = 8e-21
Identities = 54/103 (52%), Positives = 72/103 (69%), Gaps = 7/103 (6%)
Query: 111 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDS 170
NVLL ++E ++ V+IDV+H VFSAFGFV K+A FEK +GFQALIQY D +TA +AK++
Sbjct: 131 NVLLASVENMQYV-VTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEA 189
Query: 171 LDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRSRDYT 213
L+G SI G C L +++S H DLN+K + R RDYT
Sbjct: 190 LEGHSI------YEGGYCKLHLTFSRHTDLNVKVNNERGRDYT 226
>gb|AAM13217.1| putative polypyrimidine tract-binding protein [Arabidopsis
thaliana] gi|24899823|gb|AAN65126.1| putative
polypyrimidine tract-binding protein [Arabidopsis
thaliana]
Length = 189
Score = 286 bits (733), Expect = 7e-76
Identities = 136/186 (73%), Positives = 161/186 (86%)
Query: 129 VIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGAC 188
+I VFSAFGFVHK+ATFEK AGFQAL+Q+TD ETA++A+ +LDGRSIPRYLL HVG+C
Sbjct: 3 IIGQVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSC 62
Query: 189 NLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVLLA 248
+LR+SYSAH DLNIKFQS+RSRDYTNP LPVNQ A+D ++QPA+G DGK+ E +SNVLL
Sbjct: 63 SLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLG 122
Query: 249 TIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCI 308
IENMQYAV +DVLH+VFSA+G VQK+A+F+KNG T ALIQY D+ AA AKE LEGHCI
Sbjct: 123 LIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCI 182
Query: 309 YDGGYC 314
YDGGYC
Sbjct: 183 YDGGYC 188
Score = 76.3 bits (186), Expect = 2e-12
Identities = 39/87 (44%), Positives = 54/87 (61%), Gaps = 6/87 (6%)
Query: 259 LDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCI------YDGG 312
+ ++ VFSAFGFV K+A F+K AL+Q+ D+ A+AA+ L+G I G
Sbjct: 1 MPIIGQVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVG 60
Query: 313 YCKLHLTYSRHTDLNVKAFSDKSRDYT 339
C L ++YS HTDLN+K S +SRDYT
Sbjct: 61 SCSLRMSYSAHTDLNIKFQSHRSRDYT 87
Score = 68.2 bits (165), Expect = 5e-10
Identities = 36/66 (54%), Positives = 47/66 (70%), Gaps = 1/66 (1%)
Query: 111 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDS 170
NVLL IE ++ V++DV+H VFSA+G V K+A FEK QALIQY+D TAA AK++
Sbjct: 118 NVLLGLIENMQYA-VTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 176
Query: 171 LDGRSI 176
L+G I
Sbjct: 177 LEGHCI 182
>gb|AAT70479.1| At1g43190 [Arabidopsis thaliana] gi|22329999|ref|NP_175010.2|
polypyrimidine tract-binding protein, putative /
heterogeneous nuclear ribonucleoprotein, putative
[Arabidopsis thaliana] gi|48525347|gb|AAT44975.1|
At1g43190 [Arabidopsis thaliana]
Length = 432
Score = 157 bits (398), Expect = 5e-37
Identities = 108/336 (32%), Positives = 180/336 (53%), Gaps = 44/336 (13%)
Query: 17 SKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELNQAISMVSYYA 76
SKV+H RN+ E S+ +L L PFG + TK + +NQA +Q +++ A+S + ++
Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFF- 61
Query: 77 SSSEPAQVRGKTVYIQYSNRHHIV----NSNSPGDIPGNVLLVTIEGVEAGDVSIDVIHL 132
++ +P +RG+ VY+Q+S+ + N + D P +LLVTI + +++DV+H
Sbjct: 62 TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 119
Query: 133 VFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRI 192
VFS +GFV KL TF+K+AGFQALIQY + AASA+ +L GR+I + G C L I
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNI-------YDGCCQLDI 172
Query: 193 SYSAHRDLNIKFQSNRSRDYTNPMLP----------------------VNQAAIDSALQP 230
+S +L + + ++RSRDYTNP LP N +AI +A
Sbjct: 173 QFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGG 232
Query: 231 AIGPDGKRKEHKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQY 290
+ P + VL++ + ++ D L ++FS +G + ++ + +N HAL+Q
Sbjct: 233 GLPPGITGTNDRCTVLVSNLN--ADSIDEDKLFNLFSLYGNIVRIKLL-RNKPDHALVQM 289
Query: 291 PDLTIAAAAKETLEGHCIYDGGYCKLHLTYSRHTDL 326
D A A L+G ++ +L + +S+H ++
Sbjct: 290 GDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNI 322
Score = 94.4 bits (233), Expect = 7e-18
Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 40/226 (17%)
Query: 124 DVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPE 183
++S + + +F FG + KL A QAL+Q D +A SA +
Sbjct: 16 EISENDLLQLFQPFGVITKLVMLR--AKNQALLQMQDVSSAVSALQFFTN-------VQP 66
Query: 184 HVGACNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKS 243
+ N+ + +S+H++L Q+ R+ + +
Sbjct: 67 TIRGRNVYVQFSSHQELTTIEQNIHGRE----------------------------DEPN 98
Query: 244 NVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETL 303
+LL TI +M Y + +DVLH VFS +GFV+K+ F K+ ALIQY AA+A+ L
Sbjct: 99 RILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTAL 158
Query: 304 EGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQ 349
+G IYD G C+L + +S +L V +D+SRDYT +P+L A Q
Sbjct: 159 QGRNIYD-GCCQLDIQFSNLEELQVNYNNDRSRDYT--NPNLPAEQ 201
Score = 35.4 bits (80), Expect = 3.7
Identities = 22/72 (30%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
Query: 8 QQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFA-ELN 66
+ +R P+K++H LP + ++EE+ + G V++TK + QA VQF E
Sbjct: 345 KNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEE 404
Query: 67 QAISMVSYYASS 78
A ++V +A+S
Sbjct: 405 AAEALVCKHATS 416
>emb|CAD70621.1| polypyrimidine track-binding protein homologue [Cicer arietinum]
Length = 442
Score = 154 bits (390), Expect = 4e-36
Identities = 107/347 (30%), Positives = 177/347 (50%), Gaps = 54/347 (15%)
Query: 16 PSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELNQAISMVSYY 75
PSKV+H RN+ E S+ +L L FG + TK + +NQA +Q ++ AIS + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQTFGVI--TKLVMLRTKNQALLQMEDIPSAISALQFY 61
Query: 76 ASSSEPAQVRGKTVYIQYSNRHHIVN---SNSPGDIPGNVLLVTIEGVEAGDVSIDVIHL 132
A++ +RG+ VY+Q+S+ + S D P +LLVT+ ++ +++DV+
Sbjct: 62 ANAQP--SIRGRNVYVQFSSHKELTTMDQSQGRDDEPNRILLVTVHQMQY-PITVDVLQQ 118
Query: 133 VFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRI 192
VFS G+V K+ TF+K+AGFQALIQY ++A +A+ SL GR+I + G C L I
Sbjct: 119 VFSPHGYVEKIVTFQKSAGFQALIQYESRQSAVTARSSLQGRNI-------YDGCCQLDI 171
Query: 193 SYSAHRDLNIKFQSNRSRDYTNPMLP---------------------------------V 219
+S +L + + ++RSRDYTNP LP
Sbjct: 172 QFSNLDELQVNYNNDRSRDYTNPNLPTEQKGRPSHSGYGDTGMHGVQGSGARPGGFSQMT 231
Query: 220 NQAAIDSALQPAIGPDGKRKEHKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFD 279
N AAI++A + P + VL+A + + + D L ++FS +G + ++ +
Sbjct: 232 NAAAIEAAFGGDLPPGITGTNDRCTVLVANLNPDR--IDEDKLFNLFSIYGNIVRIKLL- 288
Query: 280 KNGHTHALIQYPDLTIAAAAKETLEGHCIYDGGYCKLHLTYSRHTDL 326
+N HAL+Q D A A L+G ++ +L + +S+H ++
Sbjct: 289 RNKPDHALVQMGDGFQAELAVYFLKGAMLFGK---RLEVNFSKHPNI 332
Score = 89.4 bits (220), Expect = 2e-16
Identities = 69/233 (29%), Positives = 105/233 (44%), Gaps = 55/233 (23%)
Query: 124 DVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETA-------ASAKDSLDGRSI 176
++S + + +F FG + KL QAL+Q D +A A+A+ S+ GR
Sbjct: 16 EISENDLLQLFQTFGVITKLVMLRTKN--QALLQMEDIPSAISALQFYANAQPSIRGR-- 71
Query: 177 PRYLLPEHVGACNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDG 236
N+ + +S+H++L QS D N
Sbjct: 72 ------------NVYVQFSSHKELTTMDQSQGRDDEPN---------------------- 97
Query: 237 KRKEHKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIA 296
+LL T+ MQY + +DVL VFS G+V+K+ F K+ ALIQY A
Sbjct: 98 -------RILLVTVHQMQYPITVDVLQQVFSPHGYVEKIVTFQKSAGFQALIQYESRQSA 150
Query: 297 AAAKETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQ 349
A+ +L+G IYD G C+L + +S +L V +D+SRDYT +P+L Q
Sbjct: 151 VTARSSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDYT--NPNLPTEQ 200
Score = 37.7 bits (86), Expect = 0.74
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 8 QQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQFAELNQ 67
+ +R P+K++H LP + +EE+A L G V++ K + QA VQF +
Sbjct: 355 KNYRYCCSPTKIIHLSTLPQDIIEEEIASLLEEHGLVVNCKVFEMNGKKQALVQFETEEE 414
Query: 68 AI-SMVSYYASSSEPAQVRGKTVYIQYSNRHHI 99
A ++V +AS + G V I +S +I
Sbjct: 415 ATEALVCKHAS-----PLSGSIVRISFSQLQNI 442
>gb|AAH91854.1| Unknown (protein for IMAGE:7152787) [Danio rerio]
Length = 586
Score = 142 bits (359), Expect = 2e-32
Identities = 108/340 (31%), Positives = 154/340 (44%), Gaps = 58/340 (17%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R +PS+V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 78 SKKFKGDIRSPAVPSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKG--KNQAFLEM 135
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
A +MV+YY SS +R +++QYSN + NSP + L + V+
Sbjct: 136 NSEEAAQTMVTYY--SSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQT 193
Query: 123 GD----------------------------VSIDVIHLVFSAFGFVHKLATFEKTAGFQA 154
G V++DV+H +FS FG V K+ TF K FQA
Sbjct: 194 GSLTLGGVDPSGMTGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQA 253
Query: 155 LIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRSRDYTN 214
L+Q+TD TA AK +LDG++I + G C LRIS+S LN+K+ +++SRDYT
Sbjct: 254 LLQFTDGLTAQHAKLALDGQNI-------YNGCCTLRISFSKLTSLNVKYNNDKSRDYTR 306
Query: 215 PMLPVNQAAIDSALQPAIGPDGKRKEHKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQK 274
P LP + QPA+ EH + + A P H+ AF Q
Sbjct: 307 PDLPTGDS------QPAL-------EHHAVAAAFAAPGIISAAPYASAHAFPPAFAIQQA 353
Query: 275 VAMFDKNGHTHALIQYPDLTIAAAAKE-----TLEG-HCI 308
A + P AAAA TL G HC+
Sbjct: 354 GLTIPGVPGALASLTIPGAAAAAAAASRLGFPTLTGTHCV 393
Score = 98.6 bits (244), Expect = 4e-19
Identities = 78/220 (35%), Positives = 104/220 (46%), Gaps = 10/220 (4%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVLLATIE 251
+ YS H++L N+ R + VN S + P G S VL +E
Sbjct: 162 MQYSNHKELKTDNSPNQVRAQA-ALQAVNAVQTGSLTLGGVDPSGMTGP--SPVLRVIVE 218
Query: 252 NMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCIYDG 311
N+ Y V LDVLH +FS FG V KV F KN AL+Q+ D A AK L+G IY+
Sbjct: 219 NLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKLALDGQNIYN- 277
Query: 312 GYCKLHLTYSRHTDLNVKAFSDKSRDYTVLD-PSLHAAQAPAWQTTQAATMYSGSMGQMP 370
G C L +++S+ T LNVK +DKSRDYT D P+ + A AA G + P
Sbjct: 278 GCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPALEHHAVAAAFAAPGIISAAP 337
Query: 371 SWD----PNQQEVTQSYLSAPGTFPSGQAAPPFPGYSPAA 406
P + Q+ L+ PG P A+ PG + AA
Sbjct: 338 YASAHAFPPAFAIQQAGLTIPGV-PGALASLTIPGAAAAA 376
>ref|NP_071961.1| polypyrimidine tract binding protein 1 isoform b [Rattus
norvegicus] gi|57002|emb|CAA43202.1| pyrimidine binding
protein 1 [Rattus norvegicus]
Length = 530
Score = 142 bits (358), Expect = 2e-32
Identities = 113/389 (29%), Positives = 178/389 (45%), Gaps = 79/389 (20%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R T +PS+V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 43 SKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM 100
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
+ A +MV+YY S + +RG+ +YIQ+SN + +SP L + V++
Sbjct: 101 STEEAANTMVNYYTSVAPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQS 158
Query: 123 GD---------------------------------VSIDVIHLVFSAFGFVHKLATFEKT 149
G+ V++DV+H +FS FG V K+ TF K
Sbjct: 159 GNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 218
Query: 150 AGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRS 209
FQAL+QY D +A AK SLDG++I + C LRI +S LN+K+ +++S
Sbjct: 219 NQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKS 271
Query: 210 RDYTNPMLPV--NQAAIDSALQPAIG---------------PDGKRKEHK---------- 242
RDYT P LP +Q ++D + A G P
Sbjct: 272 RDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLA 331
Query: 243 ---SNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAA 299
++VLL + N + P L +F +G VQ+V + N +AL++ D + A A
Sbjct: 332 GAGNSVLLVSNLNPERVTP-QSLFILFGVYGDVQRVKIL-FNKKENALVEMADGSQAQLA 389
Query: 300 KETLEGHCIYDGGYCKLHLTYSRHTDLNV 328
L GH ++ + +T S+H + +
Sbjct: 390 MSHLNGHKLHGK---SVRITLSKHQSVQL 415
Score = 93.6 bits (231), Expect = 1e-17
Identities = 74/234 (31%), Positives = 105/234 (44%), Gaps = 26/234 (11%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYT-----------NPMLPVNQAAIDSALQPAIGPDGKRKE 240
I +S H++L N++R N L + AA+D+ + A
Sbjct: 127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMA--------- 177
Query: 241 HKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAK 300
+S VL +EN+ Y V LDVLH +FS FG V K+ F KN AL+QY D A AK
Sbjct: 178 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 237
Query: 301 ETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAAT 360
+L+G IY+ C L + +S+ T LNVK +DKSRDYT D +Q QT AA
Sbjct: 238 LSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF 296
Query: 361 MYS-----GSMGQMPSWDPNQQEVTQSYLSAPGTFPSGQAAPPFPGYSPAAVPP 409
S G++ + ++ PG +G + +P V P
Sbjct: 297 GLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTP 350
>gb|AAH61858.1| Ptbp1 protein [Rattus norvegicus]
Length = 556
Score = 139 bits (351), Expect = 1e-31
Identities = 90/269 (33%), Positives = 136/269 (50%), Gaps = 46/269 (17%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R T +PS+V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 43 SKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM 100
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
+ A +MV+YY S + +RG+ +YIQ+SN + +SP L + V++
Sbjct: 101 STEEAANTMVNYYTSVAPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQS 158
Query: 123 GD---------------------------------VSIDVIHLVFSAFGFVHKLATFEKT 149
G+ V++DV+H +FS FG V K+ TF K
Sbjct: 159 GNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 218
Query: 150 AGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRS 209
FQAL+QY D +A AK SLDG++I + C LRI +S LN+K+ +++S
Sbjct: 219 NQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKS 271
Query: 210 RDYTNPMLPV--NQAAIDSALQPAIGPDG 236
RDYT P LP +Q ++D + A G G
Sbjct: 272 RDYTRPDLPSGDSQPSLDQTMAAAFGAPG 300
Score = 98.2 bits (243), Expect = 5e-19
Identities = 84/240 (35%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYT-----------NPMLPVNQAAIDSALQPAIGPDGKRKE 240
I +S H++L N++R N L + AA+D+ + A
Sbjct: 127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMA--------- 177
Query: 241 HKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAK 300
+S VL +EN+ Y V LDVLH +FS FG V K+ F KN AL+QY D A AK
Sbjct: 178 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 237
Query: 301 ETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAAT 360
+L+G IY+ C L + +S+ T LNVK +DKSRDYT D +Q QT AA
Sbjct: 238 LSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF 296
Query: 361 MYSGSMGQMPSWDPNQQEVTQSYLSA--PGTFPSGQAA----PPFPG-YSPAAVPPAGAS 413
G M P Y A P TF QAA P G +P A+P A A+
Sbjct: 297 GAPGIMSASP------------YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAA 344
>ref|NP_001018313.1| hypothetical protein LOC323490 [Danio rerio]
gi|63100731|gb|AAH95372.1| Hypothetical protein
LOC323490 [Danio rerio]
Length = 574
Score = 139 bits (351), Expect = 1e-31
Identities = 88/248 (35%), Positives = 125/248 (49%), Gaps = 39/248 (15%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R IPS+V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 59 SKKFKGDIRSPGIPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKG--KNQAFLEM 116
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
A +MVSYY SS +R +++QYSN + NSP + L + V+
Sbjct: 117 NTEESAQTMVSYY--SSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQT 174
Query: 123 GDVSI----------------------------DVIHLVFSAFGFVHKLATFEKTAGFQA 154
G +S+ DV+H +FS FG V K+ TF K FQA
Sbjct: 175 GGMSLAAIDGAGMGSQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQA 234
Query: 155 LIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRSRDYTN 214
L+QY+D TA AK SLDG++I + C LRIS+S LN+K+ +++SRDYT
Sbjct: 235 LVQYSDGMTAQHAKLSLDGQNI-------YNACCTLRISFSKLTSLNVKYNNDKSRDYTR 287
Query: 215 PMLPVNQA 222
P LP +
Sbjct: 288 PDLPTGDS 295
Score = 96.7 bits (239), Expect = 1e-18
Identities = 81/232 (34%), Positives = 109/232 (46%), Gaps = 19/232 (8%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQPAIGPDGKRKEHKSNVLLATIE 251
+ YS H++L N+ R + VN AI DG +S VL +E
Sbjct: 143 MQYSNHKELKTDNSPNQVRAQA-ALQAVNAVQTGGMSLAAI--DGAGMGSQSPVLRVIVE 199
Query: 252 NMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCIYDG 311
N+ Y V LDVLH +FS FG V K+ F KN AL+QY D A AK +L+G IY+
Sbjct: 200 NLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTAQHAKLSLDGQNIYN- 258
Query: 312 GYCKLHLTYSRHTDLNVKAFSDKSRDYTVLD-------PSLHAAQAPAWQTTQ----AAT 360
C L +++S+ T LNVK +DKSRDYT D PS A A T +A+
Sbjct: 259 ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPSFDAQTMAAAALTAPGIISAS 318
Query: 361 MYSGSMGQMPSWDPNQQEVTQSYLSAPGTFPSGQAAPPFPGYSPAAVPPAGA 412
Y+G+ G ++ Q + LS G A+ PG + AA A A
Sbjct: 319 PYAGAHGFPQAFAIQQ----AAGLSLQGMPAGALASLSVPGAAAAAAAAAAA 366
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding
protein) (PYBP)
Length = 555
Score = 139 bits (351), Expect = 1e-31
Identities = 90/269 (33%), Positives = 136/269 (50%), Gaps = 46/269 (17%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R T +PS+V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 43 SKKFKGDNRSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM 100
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
+ A +MV+YY S + +RG+ +YIQ+SN + +SP L + V++
Sbjct: 101 STEEAANTMVNYYTSVAPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQS 158
Query: 123 GD---------------------------------VSIDVIHLVFSAFGFVHKLATFEKT 149
G+ V++DV+H +FS FG V K+ TF K
Sbjct: 159 GNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 218
Query: 150 AGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRS 209
FQAL+QY D +A AK SLDG++I + C LRI +S LN+K+ +++S
Sbjct: 219 NQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKS 271
Query: 210 RDYTNPMLPV--NQAAIDSALQPAIGPDG 236
RDYT P LP +Q ++D + A G G
Sbjct: 272 RDYTRPDLPSGDSQPSLDQTMAAAFGAPG 300
Score = 99.0 bits (245), Expect = 3e-19
Identities = 80/234 (34%), Positives = 109/234 (46%), Gaps = 29/234 (12%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYT-----------NPMLPVNQAAIDSALQPAIGPDGKRKE 240
I +S H++L N++R N L + AA+D+ + A
Sbjct: 127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMA--------- 177
Query: 241 HKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAK 300
+S VL +EN+ Y V LDVLH +FS FG V K+ F KN AL+QY D A AK
Sbjct: 178 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 237
Query: 301 ETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAAT 360
+L+G IY+ C L + +S+ T LNVK +DKSRDYT D +Q QT AA
Sbjct: 238 LSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF 296
Query: 361 MYSGSMGQMPSWDPNQQEVTQSYLSAPGTFPSGQAAPPFPG-YSPAAVPPAGAS 413
G M P S+L P +G + P G +P A+P A A+
Sbjct: 297 GAPGIMSASP-----YAGAVPSHLCHPSR--AGLSVPNVHGALAPLAIPSAAAA 343
>ref|NP_999396.1| polypyrimidine tract-binding protein [Sus scrofa]
gi|1122433|emb|CAA63597.1| polypyrimidine tract-binding
protein [Sus scrofa] gi|2500586|sp|Q29099|PTBP1_PIG
Polypyrimidine tract-binding protein 1 (PTB)
(Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
Length = 557
Score = 139 bits (349), Expect = 2e-31
Identities = 90/269 (33%), Positives = 134/269 (49%), Gaps = 46/269 (17%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R +PS+V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 44 SKKFKGDNRSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM 101
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
A +MV+YY S + +RG+ +YIQ+SN + +SP L + V++
Sbjct: 102 NTEEAANTMVNYYTSVTPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQS 159
Query: 123 GD---------------------------------VSIDVIHLVFSAFGFVHKLATFEKT 149
G+ V++DV+H +FS FG V K+ TF K
Sbjct: 160 GNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 219
Query: 150 AGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRS 209
FQAL+QY D +A AK SLDG++I + C LRI +S LN+K+ +++S
Sbjct: 220 NQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKS 272
Query: 210 RDYTNPMLPV--NQAAIDSALQPAIGPDG 236
RDYT P LP NQ ++D + A G G
Sbjct: 273 RDYTRPDLPSGDNQPSLDQTMAAAFGAPG 301
Score = 96.7 bits (239), Expect = 1e-18
Identities = 84/239 (35%), Positives = 108/239 (45%), Gaps = 40/239 (16%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYT-----------NPMLPVNQAAIDSALQPAIGPDGKRKE 240
I +S H++L N++R N L + AA+D+ + A
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMA--------- 178
Query: 241 HKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAK 300
+S VL +EN+ Y V LDVLH +FS FG V K+ F KN AL+QY D A AK
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 238
Query: 301 ETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAAT 360
+L+G IY+ C L + +S+ T LNVK +DKSRDYT D Q QT AA
Sbjct: 239 LSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMAAAF 297
Query: 361 MYSGSMGQMPSWDPNQQEVTQSYLSA--PGTFPSGQAA----PPFPG-YSPAAVPPAGA 412
G M P Y A P TF QAA P G +P A+P A A
Sbjct: 298 GAPGIMSASP------------YAGAGFPPTFAIPQAATVSVPNVHGALAPLAIPSAAA 344
>emb|CAA52653.1| polypyrimidine tract binding protein [Rattus norvegicus]
Length = 556
Score = 138 bits (348), Expect = 3e-31
Identities = 89/269 (33%), Positives = 136/269 (50%), Gaps = 46/269 (17%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R T +P++V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 43 SKKFKGDNRSTGVPTRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM 100
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
+ A +MV+YY S + +RG+ +YIQ+SN + +SP L + V++
Sbjct: 101 STEEAANTMVNYYTSVAPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQS 158
Query: 123 GD---------------------------------VSIDVIHLVFSAFGFVHKLATFEKT 149
G+ V++DV+H +FS FG V K+ TF K
Sbjct: 159 GNLALRASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 218
Query: 150 AGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRS 209
FQAL+QY D +A AK SLDG++I + C LRI +S LN+K+ +++S
Sbjct: 219 NQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKS 271
Query: 210 RDYTNPMLPV--NQAAIDSALQPAIGPDG 236
RDYT P LP +Q ++D + A G G
Sbjct: 272 RDYTRPDLPSGDSQPSLDQTMAAAFGAPG 300
Score = 97.8 bits (242), Expect = 6e-19
Identities = 84/240 (35%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYT-----------NPMLPVNQAAIDSALQPAIGPDGKRKE 240
I +S H++L N++R N L + AA+D+ + A
Sbjct: 127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALRASAAAVDAGMAMA--------- 177
Query: 241 HKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAK 300
+S VL +EN+ Y V LDVLH +FS FG V K+ F KN AL+QY D A AK
Sbjct: 178 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 237
Query: 301 ETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAAT 360
+L+G IY+ C L + +S+ T LNVK +DKSRDYT D +Q QT AA
Sbjct: 238 LSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF 296
Query: 361 MYSGSMGQMPSWDPNQQEVTQSYLSA--PGTFPSGQAA----PPFPG-YSPAAVPPAGAS 413
G M P Y A P TF QAA P G +P A+P A A+
Sbjct: 297 GAPGIMSASP------------YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAA 344
>gb|AAP35465.1| polypyrimidine tract binding protein 1 [Homo sapiens]
gi|32354|emb|CAA47386.1| nuclear ribonucleoprotein [Homo
sapiens] gi|35772|emb|CAA46444.1| polypirimidine tract
binding protein [Homo sapiens]
gi|61359442|gb|AAX41719.1| polypyrimidine tract binding
protein 1 [synthetic construct]
gi|61359435|gb|AAX41718.1| polypyrimidine tract binding
protein 1 [synthetic construct]
gi|12803183|gb|AAH02397.1| Polypyrimidine tract-binding
protein 1, isoform a [Homo sapiens]
gi|15489171|gb|AAH13694.1| Polypyrimidine tract-binding
protein 1, isoform a [Homo sapiens]
gi|4506243|ref|NP_002810.1| polypyrimidine tract-binding
protein 1 isoform a [Homo sapiens] gi|107220|pir||S26294
polypyrimidine tract-binding protein PTB-1 [validated] -
human
Length = 557
Score = 137 bits (345), Expect = 7e-31
Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 46/269 (17%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R +PS+V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 44 SKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM 101
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
A +MV+YY S + +RG+ +YIQ+SN + +SP L + V++
Sbjct: 102 NTEEAANTMVNYYTSVTPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQS 159
Query: 123 GD---------------------------------VSIDVIHLVFSAFGFVHKLATFEKT 149
G+ V++DV+H +FS FG V K+ TF K
Sbjct: 160 GNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 219
Query: 150 AGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRS 209
FQAL+QY D +A AK SLDG++I + C LRI +S LN+K+ +++S
Sbjct: 220 NQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKS 272
Query: 210 RDYTNPMLPV--NQAAIDSALQPAIGPDG 236
RDYT P LP +Q ++D + A G G
Sbjct: 273 RDYTRPDLPSGDSQPSLDQTMAAAFGAPG 301
Score = 96.7 bits (239), Expect = 1e-18
Identities = 83/240 (34%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYT-----------NPMLPVNQAAIDSALQPAIGPDGKRKE 240
I +S H++L N++R N L + AA+D+ + A
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMA--------- 178
Query: 241 HKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAK 300
+S VL +EN+ Y V LDVLH +FS FG V K+ F KN AL+QY D A AK
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 238
Query: 301 ETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAAT 360
+L+G IY+ C L + +S+ T LNVK +DKSRDYT D +Q QT AA
Sbjct: 239 LSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF 297
Query: 361 MYSGSMGQMPSWDPNQQEVTQSYLSA--PGTFPSGQAA----PPFPG-YSPAAVPPAGAS 413
G + P Y A P TF QAA P G +P A+P A A+
Sbjct: 298 GAPGIISASP------------YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAA 345
>gb|AAP36157.1| Homo sapiens polypyrimidine tract binding protein 1 [synthetic
construct] gi|61369451|gb|AAX43339.1| polypyrimidine
tract binding protein 1 [synthetic construct]
Length = 558
Score = 137 bits (345), Expect = 7e-31
Identities = 89/269 (33%), Positives = 134/269 (49%), Gaps = 46/269 (17%)
Query: 3 SSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFVQF 62
S K + R +PS+V+H R LP + ++ E+ L PFGKV + G +NQAF++
Sbjct: 44 SKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEM 101
Query: 63 AELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGVEA 122
A +MV+YY S + +RG+ +YIQ+SN + +SP L + V++
Sbjct: 102 NTEEAANTMVNYYTSVTPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQS 159
Query: 123 GD---------------------------------VSIDVIHLVFSAFGFVHKLATFEKT 149
G+ V++DV+H +FS FG V K+ TF K
Sbjct: 160 GNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 219
Query: 150 AGFQALIQYTDAETAASAKDSLDGRSIPRYLLPEHVGACNLRISYSAHRDLNIKFQSNRS 209
FQAL+QY D +A AK SLDG++I + C LRI +S LN+K+ +++S
Sbjct: 220 NQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKS 272
Query: 210 RDYTNPMLPV--NQAAIDSALQPAIGPDG 236
RDYT P LP +Q ++D + A G G
Sbjct: 273 RDYTRPDLPSGDSQPSLDQTMAAAFGAPG 301
Score = 96.7 bits (239), Expect = 1e-18
Identities = 83/240 (34%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 192 ISYSAHRDLNIKFQSNRSRDYT-----------NPMLPVNQAAIDSALQPAIGPDGKRKE 240
I +S H++L N++R N L + AA+D+ + A
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMA--------- 178
Query: 241 HKSNVLLATIENMQYAVPLDVLHSVFSAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAK 300
+S VL +EN+ Y V LDVLH +FS FG V K+ F KN AL+QY D A AK
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 238
Query: 301 ETLEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVLDPSLHAAQAPAWQTTQAAT 360
+L+G IY+ C L + +S+ T LNVK +DKSRDYT D +Q QT AA
Sbjct: 239 LSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF 297
Query: 361 MYSGSMGQMPSWDPNQQEVTQSYLSA--PGTFPSGQAA----PPFPG-YSPAAVPPAGAS 413
G + P Y A P TF QAA P G +P A+P A A+
Sbjct: 298 GAPGIISASP------------YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAA 345
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 799,026,195
Number of Sequences: 2540612
Number of extensions: 34561557
Number of successful extensions: 135742
Number of sequences better than 10.0: 687
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 491
Number of HSP's that attempted gapping in prelim test: 132708
Number of HSP's gapped (non-prelim): 2256
length of query: 449
length of database: 863,360,394
effective HSP length: 131
effective length of query: 318
effective length of database: 530,540,222
effective search space: 168711790596
effective search space used: 168711790596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)
Medicago: description of AC148485.4