BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148485.3 - phase: 0 /pseudo
(138 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28144325 TPA: PDR3 ABC transporter [Arabidopsis thaliana] gi|... 59 3e-08
gb|AAC31858.1| putative ABC transporter [Arabidopsis thaliana] g... 59 3e-08
ref|NP_917615.1| putative ABC transporter protein [Oryza sativa ... 57 1e-07
dbj|BAD07483.1| PDR-type ABC transporter 1 [Nicotiana tabacum] 57 1e-07
emb|CAD59566.1| PDR-like ABC transporter [Oryza sativa (japonica... 57 1e-07
dbj|BAB92011.1| pleiotropic drug resistance like protein [Nicoti... 57 1e-07
gi|28144321 TPA: PDR12 ABC transporter [Arabidopsis thaliana] gi... 56 2e-07
ref|XP_482141.1| putative PDR-like ABC transporter [Oryza sativa... 54 1e-06
ref|NP_917613.1| putative ABC transporter protein [Oryza sativa ... 54 1e-06
emb|CAD59567.1| PDR-like ABC transporter [Oryza sativa (japonica... 54 1e-06
gi|28144341 TPA: PDR1 ABC transporter [Oryza sativa (japonica cu... 54 1e-06
ref|XP_550325.1| putative PDR-like ABC transporter [Oryza sativa... 52 2e-06
emb|CAC40990.1| ABC1 protein [Nicotiana plumbaginifolia] 52 2e-06
gb|AAQ01165.1| putative ATPase [Oryza sativa (japonica cultivar-... 52 3e-06
ref|XP_478448.1| putative PDR-like ABC transporter [Oryza sativa... 52 4e-06
emb|CAD59572.1| PDR-like ABC transporter [Oryza sativa (japonica... 52 4e-06
dbj|BAD28440.1| PDR-type ABC transporter 1-like [Oryza sativa (j... 52 4e-06
emb|CAA94437.1| PDR5-like ABC transporter [Spirodela polyrhiza] 51 5e-06
ref|NP_917619.1| putative ABC transporter protein [Oryza sativa ... 50 9e-06
emb|CAD59569.1| PDR-like ABC transporter [Oryza sativa (japonica... 50 9e-06
>gi|28144325 TPA: PDR3 ABC transporter [Arabidopsis thaliana]
gi|42569461|ref|NP_180555.2| ABC transporter family
protein [Arabidopsis thaliana]
Length = 1426
Score = 58.5 bits (140), Expect = 3e-08
Identities = 49/182 (26%), Positives = 77/182 (41%), Gaps = 48/182 (26%)
Query: 1 MSYLHLILSRKKPLAVLHDVSGIIKPKRSSEFW------KDYIVVGIGGKT--------- 45
+S L +I RK L +L D+SGIIKP R + K +++ + GK
Sbjct: 160 LSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGN 219
Query: 46 --------------RTSAYKSN*YRTVFQL-------------------CGIRRYAGRII 72
RTSAY S + +L G + R+
Sbjct: 220 ITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLE 279
Query: 73 KRKG*KH*TRF*S*Y*CED*KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKR 132
K +G + + + K +K ++ T Y++K+LGLD C+DTMVG DM+RG G ++
Sbjct: 280 KERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRK 339
Query: 133 EL 134
+
Sbjct: 340 RV 341
>gb|AAC31858.1| putative ABC transporter [Arabidopsis thaliana]
gi|7486039|pir||T02491 probable ABC transporter
[imported] - Arabidopsis thaliana
Length = 1443
Score = 58.5 bits (140), Expect = 3e-08
Identities = 49/182 (26%), Positives = 77/182 (41%), Gaps = 48/182 (26%)
Query: 1 MSYLHLILSRKKPLAVLHDVSGIIKPKRSSEFW------KDYIVVGIGGKT--------- 45
+S L +I RK L +L D+SGIIKP R + K +++ + GK
Sbjct: 177 LSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGN 236
Query: 46 --------------RTSAYKSN*YRTVFQL-------------------CGIRRYAGRII 72
RTSAY S + +L G + R+
Sbjct: 237 ITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTRLE 296
Query: 73 KRKG*KH*TRF*S*Y*CED*KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKR 132
K +G + + + K +K ++ T Y++K+LGLD C+DTMVG DM+RG G ++
Sbjct: 297 KERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRK 356
Query: 133 EL 134
+
Sbjct: 357 RV 358
>ref|NP_917615.1| putative ABC transporter protein [Oryza sativa (japonica
cultivar-group)]
Length = 1447
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/42 (54%), Positives = 33/42 (77%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ ++TN++T YI+KILGLD CADTMVG DM+RG G ++ +
Sbjct: 306 EGQETNLITDYILKILGLDICADTMVGDDMVRGISGGQRKRV 347
Score = 32.7 bits (73), Expect = 1.9
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
L ++ ++K+ + +LHDVSGI+KP+R
Sbjct: 170 LGILPNKKQTMPILHDVSGIVKPRR 194
>dbj|BAD07483.1| PDR-type ABC transporter 1 [Nicotiana tabacum]
Length = 1434
Score = 56.6 bits (135), Expect = 1e-07
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ ++ N+VT Y++KILGLD CADTMVG DMIRG G K+ +
Sbjct: 300 EGQEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQKKRV 341
Score = 35.8 bits (81), Expect = 0.23
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 1 MSYLHLILSRKKPLAVLHDVSGIIKPKR 28
++ LH++ SRK+ L +L D+SGIIKP R
Sbjct: 161 LNSLHILSSRKRQLTILKDISGIIKPCR 188
>emb|CAD59566.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
gi|28144345|tpg|DAA00885.1| TPA: PDR2 ABC transporter
[Oryza sativa (japonica cultivar-group)]
Length = 1464
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/42 (54%), Positives = 33/42 (77%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ ++TN++T YI+KILGLD CADTMVG DM+RG G ++ +
Sbjct: 312 EGQETNLITDYILKILGLDICADTMVGDDMVRGISGGQRKRV 353
Score = 32.7 bits (73), Expect = 1.9
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
L ++ ++K+ + +LHDVSGI+KP+R
Sbjct: 176 LGILPNKKQTMPILHDVSGIVKPRR 200
>dbj|BAB92011.1| pleiotropic drug resistance like protein [Nicotiana tabacum]
Length = 1434
Score = 56.6 bits (135), Expect = 1e-07
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ ++ N+VT Y++KILGLD CADTMVG DMIRG G K+ +
Sbjct: 300 EGQEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQKKRV 341
Score = 35.8 bits (81), Expect = 0.23
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 1 MSYLHLILSRKKPLAVLHDVSGIIKPKR 28
++ LH++ SRK+ L +L D+SGIIKP R
Sbjct: 161 LNSLHILSSRKRQLTILKDISGIIKPCR 188
>gi|28144321 TPA: PDR12 ABC transporter [Arabidopsis thaliana]
gi|8072390|gb|AAF71978.1| Putative ABC transporter
[Arabidopsis thaliana] gi|15218218|ref|NP_173005.1| ABC
transporter family protein [Arabidopsis thaliana]
gi|25384578|pir||A86289 probable ABC transporter
[imported] - Arabidopsis thaliana
Length = 1423
Score = 56.2 bits (134), Expect = 2e-07
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 95 KKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+KTN++T YI+KILGL+ CADTMVG DM+RG G K+ +
Sbjct: 295 EKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRV 334
Score = 36.2 bits (82), Expect = 0.18
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 1 MSYLHLILSRKKPLAVLHDVSGIIKPKR 28
++ LHL+ +RKK +L+DVSGI+KP R
Sbjct: 154 LNTLHLVPNRKKKFTILNDVSGIVKPGR 181
>ref|XP_482141.1| putative PDR-like ABC transporter [Oryza sativa (japonica
cultivar-group)] gi|40253893|dbj|BAD05827.1| putative
PDR-like ABC transporter [Oryza sativa (japonica
cultivar-group)]
Length = 1489
Score = 53.5 bits (127), Expect = 1e-06
Identities = 21/40 (52%), Positives = 32/40 (79%)
Query: 95 KKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
++TNI+T Y++KILGLD CADT+VG +M+RG G ++ +
Sbjct: 343 QETNIITDYVLKILGLDICADTIVGNEMLRGISGGQRKRV 382
Score = 38.5 bits (88), Expect = 0.035
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
LH++ ++K+PL +LHDV G+IKP+R
Sbjct: 205 LHVVPNKKRPLNILHDVHGVIKPRR 229
>ref|NP_917613.1| putative ABC transporter protein [Oryza sativa (japonica
cultivar-group)]
Length = 1450
Score = 53.5 bits (127), Expect = 1e-06
Identities = 21/42 (50%), Positives = 33/42 (78%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ +++N++T YI+KILGL+ CADTMVG DM+RG G ++ +
Sbjct: 308 EGQESNLITDYILKILGLEICADTMVGDDMVRGISGGQRKRV 349
Score = 35.8 bits (81), Expect = 0.23
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
L ++ +RK+ L +LHD+SGIIKPKR
Sbjct: 173 LGILPTRKQTLRILHDISGIIKPKR 197
>emb|CAD59567.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 1479
Score = 53.5 bits (127), Expect = 1e-06
Identities = 21/42 (50%), Positives = 33/42 (78%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ +++N++T YI+KILGL+ CADTMVG DM+RG G ++ +
Sbjct: 316 EGQESNLITDYILKILGLEICADTMVGDDMVRGISGGQRKRV 357
Score = 35.8 bits (81), Expect = 0.23
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
L ++ +RK+ L +LHD+SGIIKPKR
Sbjct: 181 LGILPTRKQTLRILHDISGIIKPKR 205
>gi|28144341 TPA: PDR1 ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 1468
Score = 53.5 bits (127), Expect = 1e-06
Identities = 21/42 (50%), Positives = 33/42 (78%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ +++N++T YI+KILGL+ CADTMVG DM+RG G ++ +
Sbjct: 316 EGQESNLITDYILKILGLEICADTMVGDDMVRGISGGQRKRV 357
Score = 35.8 bits (81), Expect = 0.23
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
L ++ +RK+ L +LHD+SGIIKPKR
Sbjct: 181 LGILPTRKQTLRILHDISGIIKPKR 205
>ref|XP_550325.1| putative PDR-like ABC transporter [Oryza sativa (japonica
cultivar-group)]
Length = 1399
Score = 52.4 bits (124), Expect = 2e-06
Identities = 23/42 (54%), Positives = 32/42 (75%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ K+T++V YI+KILGLD CADT+VG +MI+G G K+ L
Sbjct: 308 EGKQTSLVAEYIMKILGLDICADTIVGDEMIKGISGGQKKRL 349
>emb|CAC40990.1| ABC1 protein [Nicotiana plumbaginifolia]
Length = 1436
Score = 52.4 bits (124), Expect = 2e-06
Identities = 23/42 (54%), Positives = 30/42 (70%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ ++ +VT YI+KILGLD CADTMVG MIRG G K+ +
Sbjct: 304 EGQEAKVVTDYILKILGLDICADTMVGDQMIRGISGGQKKRV 345
Score = 32.0 bits (71), Expect = 3.3
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
+H++ S+K+ + +L DVSGI+KP R
Sbjct: 168 IHILPSKKRQVTILKDVSGIVKPCR 192
>gb|AAQ01165.1| putative ATPase [Oryza sativa (japonica cultivar-group)]
gi|34895032|ref|NP_908841.1| putative ABC transporter
[Oryza sativa (japonica cultivar-group)]
gi|21104703|dbj|BAB93292.1| putative ABC1 protein [Oryza
sativa (japonica cultivar-group)]
Length = 1451
Score = 52.0 bits (123), Expect = 3e-06
Identities = 21/40 (52%), Positives = 32/40 (79%)
Query: 95 KKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+++++VT YI+KILGLD CADT+VG DM+RG G ++ +
Sbjct: 303 QESSVVTEYILKILGLDICADTVVGNDMLRGVSGGQRKRV 342
Score = 40.4 bits (93), Expect = 0.009
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
LH+ +RK+P+ VLHDVSGIIKP+R
Sbjct: 165 LHISPTRKQPMTVLHDVSGIIKPRR 189
>ref|XP_478448.1| putative PDR-like ABC transporter [Oryza sativa (japonica
cultivar-group)] gi|33146725|dbj|BAC79614.1| putative
PDR-like ABC transporter [Oryza sativa (japonica
cultivar-group)]
Length = 1454
Score = 51.6 bits (122), Expect = 4e-06
Identities = 23/42 (54%), Positives = 30/42 (70%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ K+ NIVT ++K LGLD CADT+VGG MIRG G K+ +
Sbjct: 310 EGKQNNIVTDLVLKALGLDICADTIVGGAMIRGISGGQKKRV 351
>emb|CAD59572.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 1315
Score = 51.6 bits (122), Expect = 4e-06
Identities = 23/42 (54%), Positives = 30/42 (70%)
Query: 93 KAKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+ K+ NIVT ++K LGLD CADT+VGG MIRG G K+ +
Sbjct: 310 EGKQNNIVTDLVLKALGLDICADTIVGGAMIRGISGGQKKRV 351
>dbj|BAD28440.1| PDR-type ABC transporter 1-like [Oryza sativa (japonica
cultivar-group)]
Length = 422
Score = 51.6 bits (122), Expect = 4e-06
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 95 KKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+K +VT +I+KILGLD CADT+VG +M+RG G K+ L
Sbjct: 274 QKAEVVTNHILKILGLDICADTIVGNNMLRGISGGQKKRL 313
>emb|CAA94437.1| PDR5-like ABC transporter [Spirodela polyrhiza]
Length = 1441
Score = 51.2 bits (121), Expect = 5e-06
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 98 NIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
++VT YI+KILGLD CADTMVG MIRG G K+ +
Sbjct: 301 SVVTDYILKILGLDICADTMVGDGMIRGISGGQKKRV 337
Score = 40.8 bits (94), Expect = 0.007
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 1 MSYLHLILSRKKPLAVLHDVSGIIKPKR 28
+S LHL+ S K+P+++LHDVSGIIKP R
Sbjct: 158 LSALHLMPSGKRPISILHDVSGIIKPCR 185
>ref|NP_917619.1| putative ABC transporter protein [Oryza sativa (japonica
cultivar-group)]
Length = 1417
Score = 50.4 bits (119), Expect = 9e-06
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 95 KKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+++++VT YI+KILGLD CADT+VG +M+RG G ++ +
Sbjct: 292 QESSVVTDYILKILGLDICADTVVGNEMLRGISGGQRKRV 331
Score = 40.8 bits (94), Expect = 0.007
Identities = 16/25 (64%), Positives = 23/25 (92%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
LH++ ++K+P+ VLHDVSGIIKP+R
Sbjct: 154 LHILPNKKQPMTVLHDVSGIIKPRR 178
>emb|CAD59569.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
gi|28144319|tpg|DAA00887.1| TPA: PDR4 ABC transporter
[Oryza sativa (japonica cultivar-group)]
Length = 1450
Score = 50.4 bits (119), Expect = 9e-06
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 95 KKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKREL 134
+++++VT YI+KILGLD CADT+VG +M+RG G ++ +
Sbjct: 299 QESSVVTDYILKILGLDICADTVVGNEMLRGISGGQRKRV 338
Score = 40.8 bits (94), Expect = 0.007
Identities = 16/25 (64%), Positives = 23/25 (92%)
Query: 4 LHLILSRKKPLAVLHDVSGIIKPKR 28
LH++ ++K+P+ VLHDVSGIIKP+R
Sbjct: 161 LHILPNKKQPMTVLHDVSGIIKPRR 185
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.351 0.160 0.530
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,030,737
Number of Sequences: 2540612
Number of extensions: 5992195
Number of successful extensions: 47680
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 47497
Number of HSP's gapped (non-prelim): 189
length of query: 138
length of database: 863,360,394
effective HSP length: 114
effective length of query: 24
effective length of database: 573,730,626
effective search space: 13769535024
effective search space used: 13769535024
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC148485.3