BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148484.9 + phase: 0
(502 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB62436.1| U1 snRNP 70K protein [Arabidopsis thaliana] gi|2... 535 e-150
gb|AAP51870.1| putative U1 small nuclear ribonucleoprotein [Oryz... 526 e-148
gb|AAT64946.1| U1 snRNP [Zea mays] gi|49343272|gb|AAT64945.1| U1... 526 e-148
gb|AAH81331.1| Snrp70-prov protein [Xenopus tropicalis] gi|62857... 341 3e-92
emb|CAA30972.1| U1 70K [Xenopus laevis] gi|134091|sp|P09406|RU17... 321 3e-86
emb|CAA28352.1| unnamed protein product [Homo sapiens] 318 3e-85
emb|CAA59278.1| 68 kDa (U1) ribonucleoprotein [Homo sapiens] gi|... 318 3e-85
ref|NP_001003875.1| U1 small nuclear ribonucleoprotein polypepti... 315 2e-84
ref|NP_033250.3| U1 small nuclear ribonucleoprotein 70 kDa [Mus ... 315 2e-84
gb|AAA36573.1| ribonucleoprotein antigen 315 2e-84
ref|XP_341858.2| PREDICTED: similar to U1 small nuclear ribonucl... 314 4e-84
pir||S28147 U1 snRNP 70K protein - Arabidopsis thaliana (fragment) 309 1e-82
ref|XP_308988.2| ENSANGP00000020311 [Anopheles gambiae str. PEST... 309 2e-82
ref|XP_623789.1| PREDICTED: similar to ENSANGP00000028567 [Apis ... 298 2e-79
ref|XP_565448.1| ENSANGP00000028567 [Anopheles gambiae str. PEST... 294 4e-78
gb|AAH97714.1| Unknown (protein for IMAGE:6871460) [Xenopus laevis] 290 7e-77
gb|EAL32844.1| GA21298-PA [Drosophila pseudoobscura] 288 3e-76
gb|AAA28859.1| U1 70K small nuclear ribonucleoprotein, (first e... 284 4e-75
gb|AAF52471.1| CG8749-PA [Drosophila melanogaster] gi|19528491|g... 283 7e-75
gb|AAD12776.1| U1 snRNP 70K truncated protein [Arabidopsis thali... 279 1e-73
>emb|CAB62436.1| U1 snRNP 70K protein [Arabidopsis thaliana]
gi|20334806|gb|AAM16264.1| AT3g50670/T3A5_50
[Arabidopsis thaliana] gi|14532500|gb|AAK63978.1|
AT3g50670/T3A5_50 [Arabidopsis thaliana]
gi|1354469|gb|AAD12775.1| U1 snRNP 70K protein
[Arabidopsis thaliana] gi|1255711|gb|AAD12773.1| small
nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|13633916|sp|Q42404|RU17_ARATH U1 small nuclear
ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70)
(U1-70K) gi|15229825|ref|NP_190636.1| U1 small nuclear
ribonucleoprotein 70 (U1-70k) [Arabidopsis thaliana]
Length = 427
Score = 535 bits (1377), Expect = e-150
Identities = 299/505 (59%), Positives = 353/505 (69%), Gaps = 92/505 (18%)
Query: 3 DPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKR 62
DP LRN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKPPPEKR
Sbjct: 6 DPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKR 65
Query: 63 KCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYD 122
KCPP TGMAQFVS FAEPG+PEY+PP P VE P+++R R+HKLRLEKG KAAE+L+KYD
Sbjct: 66 KCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYD 125
Query: 123 PHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIE 182
P+NDPN +GDPYKTLFV+RL+YE++ES+IKREFESYG IKRV LVTD +NKP+GYAFIE
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 183 YLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRH 242
Y+HTRDMKAAYKQADG+KI+GRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGG E
Sbjct: 186 YMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE---EI 242
Query: 243 SGREQQQSGPSRSEEP-RVREERHADRDREKSRERGKDRDRERERSRERSSDKARDRDRD 301
G +Q Q S+SEEP R REE REKSRE+GK+R+R RE S E+ +++RDR
Sbjct: 243 VGEQQPQGRTSQSEEPSRPREE------REKSREKGKERERSRELSHEQPRERSRDRP-- 294
Query: 302 HREDRHHRDRD---RNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDVE 358
RED+HHRDRD R+RDRD ++RDR RDRG DR+R RDRDRGR+R RDH+R
Sbjct: 295 -REDKHHRDRDQGGRDRDRDSRRDRDRTRDRG-DRDR-RDRDRGRDR---TSRDHDR--- 345
Query: 359 HDRYREKDKDYEVGETDR---GRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYK 415
DR R+K++DYE GE + GRS +R A+Y EP++ G Y+
Sbjct: 346 -DRSRKKERDYEGGEYEHEGGGRSRERDAEYRG-----------------EPEETRGYYE 387
Query: 416 EPGHGHRHADPEHDPDHYNHYEHQRGRGQYDEGDDRGDYNQYPDHAKMEDDHHTERAKSK 475
D + D D Y+H +YD+ + EDD ER
Sbjct: 388 ---------DDQGDTDRYSH--------RYDKME--------------EDDFRYER---- 412
Query: 476 SRDRDRNRDKDHDYHRSERSHSREY 500
+Y RS+RS SREY
Sbjct: 413 ------------EYKRSKRSESREY 425
Score = 43.1 bits (100), Expect = 0.020
Identities = 44/193 (22%), Positives = 66/193 (33%), Gaps = 49/193 (25%)
Query: 310 DRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDY 369
D +R R + R G R G + G ++ + R E REK ++
Sbjct: 212 DVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQPQGRTSQSEEPSRPREEREKSRE- 270
Query: 370 EVGETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHD 429
+G+ +R + H + + E RD +D H R ++ G R D D
Sbjct: 271 ------KGKERERSRELSHEQPR-------ERSRDRPREDKHHRDRDQGGRDRDRDSRRD 317
Query: 430 PDHYNHYEHQRGRGQYDEGDDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHDY 489
D DRGD ++ RDRDR RD+
Sbjct: 318 RDRTR---------------DRGDRDR--------------------RDRDRGRDRTSRD 342
Query: 490 HRSERSHSREYDY 502
H +RS +E DY
Sbjct: 343 HDRDRSRKKERDY 355
>gb|AAP51870.1| putative U1 small nuclear ribonucleoprotein [Oryza sativa (japonica
cultivar-group)] gi|37530562|ref|NP_919583.1| putative
U1 small nuclear ribonucleoprotein [Oryza sativa
(japonica cultivar-group)] gi|14028993|gb|AAK52534.1|
Putative U1 small nuclear ribonucleoprotein [Oryza
sativa]
Length = 491
Score = 526 bits (1355), Expect = e-148
Identities = 288/485 (59%), Positives = 350/485 (71%), Gaps = 53/485 (10%)
Query: 13 VQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQ 72
+Q+RTK Q R NV QLKL+GQ HPTGLT NLLKLFEPRPPL++KPP EKRK P TGMAQ
Sbjct: 18 MQSRTKGQ-RVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFKPPVEKRKLPAYTGMAQ 76
Query: 73 FVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGD 132
FVS+FAEPG+PEY+PPVP ET AE++ R+ K +L++GAAK AEEL+KYDP +DPN +GD
Sbjct: 77 FVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAEELQKYDPQSDPNATGD 136
Query: 133 PYKTLFVARLSYETTESRIKREFESYGAIKR----------------------------V 164
PYKTLFVARL+YET+E R+KREFE+YG IKR V
Sbjct: 137 PYKTLFVARLNYETSEHRVKREFEAYGPIKRQTSLKNVGDGTTYLQAWGFYILGFIRLLV 196
Query: 165 RLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRL 224
RLVTD E+NKPRGYAFIEY+HTRDMK AYKQADGRK++ RRVLVDVERGRTVPNWRPRRL
Sbjct: 197 RLVTDKETNKPRGYAFIEYMHTRDMKNAYKQADGRKVDNRRVLVDVERGRTVPNWRPRRL 256
Query: 225 GGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKSRERGKDRDRER 284
GGGLG++R+GG+ Q+ S R+QQ +G RSEEPR R+ER ADRDREKSRER ++RDR+
Sbjct: 257 GGGLGSSRIGGENAEQKLSTRDQQHAGRPRSEEPR-RDERRADRDREKSRERPRERDRD- 314
Query: 285 ERSRERSSDKARDRDRDHREDR-HHRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGR 343
ER+RERS D R R+RD +EDR HHRDRDR RDR+RG RDRERD GRDR+R RDR R R
Sbjct: 315 ERTRERSHD--RTRERDSKEDRHHHRDRDRTRDRERG--RDRERDHGRDRDRERDR-RDR 369
Query: 344 ERDRDRERDHERDVE--HDRYRE----KDKDYEVG--ETDRGRSHDRGADYDHVESKHEK 395
+RDRDR RD+ERD + HDR+RE +++DYE E DRG H+R A++ + E KH++
Sbjct: 370 DRDRDRGRDYERDRDRGHDRHRERGRDRERDYERASHERDRGHMHERDAEFANGEPKHDQ 429
Query: 396 EPHGEIERDYEPDDHHGRYK-EPGHGHRHADPEHDPDHYNHYEHQRGRGQYDEGDDRGDY 454
E +YE H Y+ E H H + P++ + G YDEGD + Y
Sbjct: 430 ----EYGYNYEQHKSHDAYETERSKRHEHEYYQMQPNNTEPEGPEEGEA-YDEGDYQ--Y 482
Query: 455 NQYPD 459
+Q D
Sbjct: 483 HQAAD 487
Score = 70.5 bits (171), Expect = 1e-10
Identities = 58/187 (31%), Positives = 79/187 (42%), Gaps = 40/187 (21%)
Query: 320 GKERDRERDRGRDRER-GRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGR 378
G E ++ RD++ GR R RD +R D +R+ +R RE+D+D E R R
Sbjct: 266 GGENAEQKLSTRDQQHAGRPRSEEPRRD-ERRADRDREKSRERPRERDRD----ERTRER 320
Query: 379 SHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEH 438
SHDR + D E +H +RD D GR +E HG R D E D
Sbjct: 321 SHDRTRERDSKEDRHHHR-----DRDRTRDRERGRDRERDHG-RDRDRERD--------- 365
Query: 439 QRGRGQYDEGDDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHDY----HRSER 494
R D DRG D+ +R + R R+R RD++ DY H +R
Sbjct: 366 ---RRDRDRDRDRGR------------DYERDRDRGHDRHRERGRDRERDYERASHERDR 410
Query: 495 SHSREYD 501
H E D
Sbjct: 411 GHMHERD 417
>gb|AAT64946.1| U1 snRNP [Zea mays] gi|49343272|gb|AAT64945.1| U1 snRNP [Zea mays]
Length = 491
Score = 526 bits (1354), Expect = e-148
Identities = 288/484 (59%), Positives = 347/484 (71%), Gaps = 37/484 (7%)
Query: 22 RANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPG 81
R NV QLKL+GQ HPTGLT NLLKLFEPRPPLEYKPP EKRK P TGMAQFVS FAEP
Sbjct: 25 RPNVQQLKLMGQIHPTGLTPNLLKLFEPRPPLEYKPPLEKRKLPAYTGMAQFVSHFAEPE 84
Query: 82 EPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVAR 141
+PEY+PPVP ET AE++AR+ +LE+GAAK AEEL+KYDP +DPN +GDPYKTLFVAR
Sbjct: 85 DPEYAPPVPKCETRAEKKARIRNNKLEQGAAKVAEELQKYDPQSDPNATGDPYKTLFVAR 144
Query: 142 LSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKI 201
L+YET+E RIKREFE YG IKRVRLVT+ +++KPRGYAFIEY+HTRDMK AY ADGRK+
Sbjct: 145 LNYETSEQRIKREFEGYGPIKRVRLVTEKDTSKPRGYAFIEYVHTRDMKNAYPAADGRKV 204
Query: 202 EGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVR 261
+ RRVLVDVERGRTVPNWRPRRLGGGLG+TR+GG + +++ S REQQQ G RSEEPR R
Sbjct: 205 DNRRVLVDVERGRTVPNWRPRRLGGGLGSTRMGGTDTDKKDSTREQQQGGRPRSEEPR-R 263
Query: 262 EERHADRDREKSRERGKDRDRERERSRERSSDKARDRD-RDHREDRHHRDRDRNRDRDRG 320
++R ADRDREKSRER ++RDRE ER+RERS D+ RDRD RD E HHRDR+R RDR+RG
Sbjct: 264 DDRRADRDREKSRERVRERDRE-ERTRERSHDRTRDRDLRD--EKHHHRDRERTRDRERG 320
Query: 321 KERDRERDRGRDRERG-RDRDRGRERDRDRERDHERDVEHDRYREK-----DKDYE--VG 372
K DRERD GRDRER RDRD+ R RD DRERD R HDR+RE+ ++DYE
Sbjct: 321 K--DRERDHGRDRERDRRDRDKDRGRDYDRERDRGR--SHDRHRERGRDRGERDYERTSH 376
Query: 373 ETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYKE-PGH---GHRHADPEH 428
E DRG H+R ADY + +KH+K Y D +G+Y++ GH G+ H
Sbjct: 377 ERDRGHMHERDADYGNGGTKHDKN-----LSSYGQDYGYGQYEQHKGHDAYGYSQDVRGH 431
Query: 429 DPDHYNHYEHQRGRGQYDEGDDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHD 488
+ +H +EH+ R G +Y P++A+ E E + + D+
Sbjct: 432 ETEHSKRHEHEYYRVD-SYGKMEANYQMPPNNAEPEGPEEGEAYE----------EGDYQ 480
Query: 489 YHRS 492
YHRS
Sbjct: 481 YHRS 484
Score = 69.3 bits (168), Expect = 3e-10
Identities = 52/180 (28%), Positives = 78/180 (42%), Gaps = 19/180 (10%)
Query: 320 GKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRS 379
G + D++ ++ GR R RD DR D +R+ +R RE+D++ E R RS
Sbjct: 238 GTDTDKKDSTREQQQGGRPRSEEPRRD-DRRADRDREKSRERVRERDRE----ERTRERS 292
Query: 380 HDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQ 439
HDR D D + KH +R+ D G+ +E HG D D
Sbjct: 293 HDRTRDRDLRDEKHHHR-----DRERTRDRERGKDRERDHGRDRERDRRDRDK------D 341
Query: 440 RGRGQYDEGDDRG-DYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHDYHRSERSHSR 498
RGR YD DRG ++++ + + + ER S RDR ++D DY H +
Sbjct: 342 RGR-DYDRERDRGRSHDRHRERGRDRGERDYERT-SHERDRGHMHERDADYGNGGTKHDK 399
Score = 44.3 bits (103), Expect = 0.009
Identities = 45/191 (23%), Positives = 67/191 (34%), Gaps = 26/191 (13%)
Query: 322 ERDRERDRG---------RDRERGRDRDRGRERDRDRER-DHERDVEHDRYREKDKDYEV 371
E+D + RG RD + GR+ D R D ER +R + +
Sbjct: 172 EKDTSKPRGYAFIEYVHTRDMKNAYPAADGRKVDNRRVLVDVERGRTVPNWRPRRLGGGL 231
Query: 372 GETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPD 431
G T G G D D +S E++ G R +EP R AD + +
Sbjct: 232 GSTRMG-----GTDTDKKDSTREQQQGGR-----------PRSEEPRRDDRRADRDREKS 275
Query: 432 HYNHYEHQRGRGQYDEGDDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHDYHR 491
E R + DR D D R + + +DR+R+ +D + R
Sbjct: 276 RERVRERDREERTRERSHDRTRDRDLRDEKHHHRDRERTRDRERGKDRERDHGRDRERDR 335
Query: 492 SERSHSREYDY 502
+R R DY
Sbjct: 336 RDRDKDRGRDY 346
>gb|AAH81331.1| Snrp70-prov protein [Xenopus tropicalis]
gi|62857785|ref|NP_001017239.1| hypothetical protein
LOC549993 [Xenopus tropicalis]
gi|56118714|ref|NP_001008126.1| snrp70-prov protein
[Xenopus tropicalis]
Length = 471
Score = 341 bits (875), Expect = 3e-92
Identities = 203/468 (43%), Positives = 270/468 (57%), Gaps = 55/468 (11%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKS 273
RTV WRPRRLGGGLG TR GG +VN RHSGR+ SR +E ER DR RE+S
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDD----TSRYDERDRDRERERDR-RERS 236
Query: 274 RERGKDRDRERERSRERSSDKARDRDRDHREDRHHRDRDRNRDRDRGKERDRERDRGRDR 333
RER K+R+R R RSRER + R R R+ E + R+R R++D+D+ K++D+E+D+ +DR
Sbjct: 237 RERDKERERRRSRSRER---RRRSRSREKEERKRSRERSRDKDKDKDKDKDKEKDKDKDR 293
Query: 334 ERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRSHDRGADYDHVESKH 393
+R R R R R+R RERD +R+ + DR + + D ++ D G D +E K
Sbjct: 294 DRKR---RSRSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQTGDLG--IDGIELKQ 348
Query: 394 EKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRGRGQYDEGDDRGD 453
E E E RD + R D E D D + R R D D+
Sbjct: 349 EPE---EKNRDRD---------------RERDREKDRDKDRDRDRDRRRSHRDRERDK-- 388
Query: 454 YNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDH--DYHRSERSHSRE 499
D +R + + RDRDR+RD+DH + R +R RE
Sbjct: 389 ------------DRERDRDRRRDRDRDRDRDRDHKRERDRGDRGEKRE 424
Score = 89.0 bits (219), Expect = 3e-16
Identities = 53/126 (42%), Positives = 73/126 (57%), Gaps = 11/126 (8%)
Query: 251 GPSRSEEPRVREERHADRDREKSRERGKDRDRERERSRERSS-DKARDRDRDHREDRHHR 309
G +EP EE++ DRDRE+ RE+ +D+DR+R+R R RS D+ RD+DR+ DR R
Sbjct: 343 GIELKQEP---EEKNRDRDRERDREKDRDKDRDRDRDRRRSHRDRERDKDRERDRDRR-R 398
Query: 310 DRDRNRDRDRGKERDRER-DRGRDRE-----RGRDRDRGRERDRDRERDHERDVEHDRYR 363
DRDR+RDRDR +R+R+R DRG RE G ++ E +D D E D Y
Sbjct: 399 DRDRDRDRDRDHKRERDRGDRGEKREERVPDNGMVMEQAEETSQDMYLDQESMQSGDGYL 458
Query: 364 EKDKDY 369
+ Y
Sbjct: 459 STENGY 464
>emb|CAA30972.1| U1 70K [Xenopus laevis] gi|134091|sp|P09406|RU17_XENLA U1 small
nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 471
Score = 321 bits (823), Expect = 3e-86
Identities = 209/475 (44%), Positives = 267/475 (56%), Gaps = 69/475 (14%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESN---KPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDV 210
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 211 ERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDR 270
ERGRTV WRPRRLGGGLG TR GG +VN RHSGR+ R E R DR R
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRE------RERDR-R 234
Query: 271 EKSRERGKD-RDRERERSRERSSDKARDRDRDHREDRHHRDRDRNRDRDRGKERDRERDR 329
E+SRER K+ R+R R RSRER K+R R+++ R+ R R++++D+D+ K++D +DR
Sbjct: 235 ERSREREKEPRERRRSRSRERRR-KSRSREKEERK----RTREKSKDKDKEKDKDN-KDR 288
Query: 330 GRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRSHDR---GADY 386
R R R R R+R RERDRDRE+ ER + EV E D D
Sbjct: 289 DRKR-RSRSRERKRERDRDREKKEER-----------VEAEVPEADDAPQDDAQIGDLGI 336
Query: 387 DHVESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRGRGQYD 446
D +E K E E E+ E D R +E G R D + D D R R D
Sbjct: 337 DGIELKQEPE-----EKSRERDRERDRDREKGEKDRDKDRDRDRD--------RRRSHRD 383
Query: 447 EGDDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDH--DYHRSERSHSRE 499
DR E D +R + + RDRDR RDKDH + R +RS RE
Sbjct: 384 R--DR------------EKDRDRDRDRRRDRDRDRERDKDHKRERDRGDRSEKRE 424
Score = 80.9 bits (198), Expect = 9e-14
Identities = 45/117 (38%), Positives = 67/117 (56%), Gaps = 6/117 (5%)
Query: 251 GPSRSEEPRVREERHADRDREKSRERG-KDRDRERERSRERSSDKARDRDRDHREDRHHR 309
G +EP + R DR+R++ RE+G KDRD++R+R R+R + RDRD +DR R
Sbjct: 338 GIELKQEPE-EKSRERDRERDRDREKGEKDRDKDRDRDRDR---RRSHRDRDREKDRD-R 392
Query: 310 DRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKD 366
DRDR RDRDR +ERD++ R RDR ++ R D + + D Y +++
Sbjct: 393 DRDRRRDRDRDRERDKDHKRERDRGDRSEKREERVPDNGMVMEQAEETSQDMYLDQE 449
Score = 77.8 bits (190), Expect = 7e-13
Identities = 50/124 (40%), Positives = 67/124 (53%), Gaps = 15/124 (12%)
Query: 256 EEPRVREERHADRDREKS---RERGKDRDRERERS-RERSSDKARDRDRDHREDRHHRDR 311
EE +R DRDREK R++ +DRDR+R RS R+R +K RDRDRD R RDR
Sbjct: 346 EEKSRERDRERDRDREKGEKDRDKDRDRDRDRRRSHRDRDREKDRDRDRDRR-----RDR 400
Query: 312 DRNRDRDRGKERDRER-DRGRDRE-----RGRDRDRGRERDRDRERDHERDVEHDRYREK 365
DR+R+RD+ +R+R+R DR RE G ++ E +D D E D Y
Sbjct: 401 DRDRERDKDHKRERDRGDRSEKREERVPDNGMVMEQAEETSQDMYLDQESMQSGDGYLST 460
Query: 366 DKDY 369
+ Y
Sbjct: 461 ENGY 464
>emb|CAA28352.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 318 bits (815), Expect = 3e-85
Identities = 181/398 (45%), Positives = 240/398 (59%), Gaps = 61/398 (15%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 182 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 238
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 239 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 298
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 299 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 358
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPSRSEEPRVREERHADR 268
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS P +R DR
Sbjct: 359 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPS----PLPHRDRDRDR 414
Query: 269 DREKSRERGKDRDRERERSRERSSD-KARDRDRDHREDRHHRDRDRNRDRDRGKERDRER 327
+RE+ RER ++RD+ERER R RS D + R R RD E R R+R +++DRDR + R R
Sbjct: 415 ERER-RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSR 473
Query: 328 DRG-RDRERGRD-----------------------------------RDRGRERDRDRER 351
+R R+RER + ++GR+RDR+R R
Sbjct: 474 ERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRR 533
Query: 352 DH----ERDVEHDRYREKDKDYEVGE--TDRGRSHDRG 383
H ER + DR R++D++++ GE ++RGR RG
Sbjct: 534 SHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARG 571
>emb|CAA59278.1| 68 kDa (U1) ribonucleoprotein [Homo sapiens]
gi|12654935|gb|AAH01315.1| U1 small nuclear
ribonucleoprotein 70 kDa [Homo sapiens]
gi|13635663|sp|P08621|RU17_HUMAN U1 small nuclear
ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70)
(U1-70K) gi|29568103|ref|NP_003080.2| U1 small nuclear
ribonucleoprotein 70 kDa isoform a [Homo sapiens]
gi|337444|gb|AAA36572.1| ribonucleoprotein antigen
gi|337447|gb|AAA03001.1| small ribonucleoprotein 70 kd
protein
Length = 437
Score = 318 bits (815), Expect = 3e-85
Identities = 181/398 (45%), Positives = 240/398 (59%), Gaps = 61/398 (15%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPSRSEEPRVREERHADR 268
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS P +R DR
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPS----PLPHRDRDRDR 237
Query: 269 DREKSRERGKDRDRERERSRERSSD-KARDRDRDHREDRHHRDRDRNRDRDRGKERDRER 327
+RE+ RER ++RD+ERER R RS D + R R RD E R R+R +++DRDR + R R
Sbjct: 238 ERER-RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSR 296
Query: 328 DRG-RDRERGRD-----------------------------------RDRGRERDRDRER 351
+R R+RER + ++GR+RDR+R R
Sbjct: 297 ERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRR 356
Query: 352 DH----ERDVEHDRYREKDKDYEVGE--TDRGRSHDRG 383
H ER + DR R++D++++ GE ++RGR RG
Sbjct: 357 SHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARG 394
>ref|NP_001003875.1| U1 small nuclear ribonucleoprotein polypeptide A [Danio rerio]
gi|49619089|gb|AAT68129.1| U1 small ribonucleoprotein
70kd [Danio rerio]
Length = 495
Score = 315 bits (808), Expect = 2e-84
Identities = 195/444 (43%), Positives = 252/444 (55%), Gaps = 49/444 (11%)
Query: 39 LTANLLKLFEPRPPLEYKP-----PPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ + P P EK P G+A F+ F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPFLPQLGKLPHEKHHNQPYCGIAPFIRHFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERLERKRREKMERRQVVVEGELKLWDPHNDANAQGDAFKTLFVARINYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V + ++ KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKS 273
RTV WRPRRLGGGLG TR GG +VN +HSGR+ SR ++ + +R DRDR +
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRDD----TSRYDDRPIGSDR--DRDRGER 235
Query: 274 RERGKDRDRERERSRERSSDKARDRDRDHREDRHHRDRDRNRDRDRGKERDRERDR---- 329
RER ++RDR++ER R ++R R+R H R+R D G R RER+R
Sbjct: 236 RERSRERDRDKERGERR---RSRSRERRRHTRSHERERAAAGDEAGGSSRRRERERERGG 292
Query: 330 ---GRDRERGRDRDRGRERD-RDRERDHERDVEHDRYREKDKDYEVGETDRG-------- 377
G RER RDRDR R+R R R RD +RD RE+ K E GE G
Sbjct: 293 AGAGESRERSRDRDRDRDRKRRSRSRDRKRD------RERGKGAEGGEEGMGGLVDGMMP 346
Query: 378 RSHDRGADYDHVESK----HEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHY 433
DRG + D + + E P GE ER + D R ++ HR D E D D
Sbjct: 347 EGGDRGIE-DPLGGEPGRGEEGGPEGE-ERGRDRDKDRERDRDRKRSHRDKDRERDRDRR 404
Query: 434 ----NHYEHQRGRGQYDEGDDRGD 453
+H+R RG D G+ R D
Sbjct: 405 RDRDRDRDHKRDRGDRDRGERRED 428
Score = 57.8 bits (138), Expect = 8e-07
Identities = 54/178 (30%), Positives = 76/178 (42%), Gaps = 19/178 (10%)
Query: 187 RDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE 246
RD K + D ++ D ERG+ G G GGD + G E
Sbjct: 309 RDRKRRSRSRDRKR--------DRERGKGAEGGEEGMGGLVDGMMPEGGDRGIEDPLGGE 360
Query: 247 Q---QQSGPSRSEEPRVRE-ERHADRDREKS-----RERGKDRDRERERSRERSSDKARD 297
++ GP E R R+ +R DRDR++S RER +DR R+R+R R+ D+ D
Sbjct: 361 PGRGEEGGPEGEERGRDRDKDRERDRDRKRSHRDKDRERDRDRRRDRDRDRDHKRDRG-D 419
Query: 298 RDR-DHREDRHHRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHE 354
RDR + REDRH + G E E + E +D R D+D + E
Sbjct: 420 RDRGERREDRHITSSGDHEGLGNGGEEGEEPVPPQSEEGSQDGMRMMMMDQDSMQSGE 477
Score = 38.5 bits (88), Expect = 0.50
Identities = 40/162 (24%), Positives = 60/162 (36%), Gaps = 50/162 (30%)
Query: 385 DYDHVESK--HEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRG- 441
+YD ESK E E +G I+R Y + + G+ + EH+ D ++ Y+H G
Sbjct: 111 NYDTTESKLRREFEVYGPIKRIYIV---YNKKTGKPRGYAFIEYEHERDMHSAYKHADGK 167
Query: 442 ------------RGQYDEG---------------------------DDRGDYNQYPDHAK 462
RG+ +G DD Y+ P +
Sbjct: 168 KIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIKHSGRDDTSRYDDRPIGSD 227
Query: 463 MEDDHHTERAKSKSRDRD-----RNRDKDHDYHRSERSHSRE 499
+ D R +S+ RDRD R R + + R RSH RE
Sbjct: 228 RDRDRGERRERSRERDRDKERGERRRSRSRERRRHTRSHERE 269
>ref|NP_033250.3| U1 small nuclear ribonucleoprotein 70 kDa [Mus musculus]
Length = 448
Score = 315 bits (808), Expect = 2e-84
Identities = 182/409 (44%), Positives = 240/409 (58%), Gaps = 73/409 (17%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPSRSEEPRVREERHADR 268
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS P +R DR
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPS----PLPHRDRDRDR 237
Query: 269 DREKSRERGKDRDRERERSRERSSD---KARDRDRDHREDRHHRDRDRNRDRDRGKERDR 325
+RE+ RER ++RD+ERER R RS D ++R RD+D R R +D++RDR R R R
Sbjct: 238 ERER-RERSRERDKERERRRSRSRDRRRRSRSRDKDERRRSRERSKDKDRDRKRRSSRSR 296
Query: 326 ERDRGRDRERGRD----------------------------------------------- 338
ER R R+RER +
Sbjct: 297 ERAR-RERERKEELRGGGGGGGGGSGGGGGGDMAEPSEAGDGAPDDGPPGELGPEGPDGP 355
Query: 339 RDRGRERDRDRERDH--ERDVEHDRYREKDKDYEVGE--TDRGRSHDRG 383
++GR+RDR+R R H ER+ DR R++D++++ GE ++RGR RG
Sbjct: 356 EEKGRDRDRERRRSHRSERERRRDRDRDRDREHKRGERGSERGRDEARG 404
Score = 56.2 bits (134), Expect = 2e-06
Identities = 47/146 (32%), Positives = 59/146 (40%), Gaps = 21/146 (14%)
Query: 225 GGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKSRERGKDRDRER 284
GGG GGD +G GP P + E+G+DRDRER
Sbjct: 316 GGGGSGGGGGGDMAEPSEAGDGAPDDGPPGELGPE---------GPDGPEEKGRDRDRER 366
Query: 285 ERSRERSSDKARDRDRDHREDRHHRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRE 344
RS ++ RDRDRD RDR+ R +RG ER R+ RG G +D G E
Sbjct: 367 RRSHRSERERRRDRDRD-------RDREHKRG-ERGSERGRDEARGGG---GSGQDNGLE 415
Query: 345 RDRDRERDHERDVE-HDRYREKDKDY 369
RD + E D Y + Y
Sbjct: 416 GLGSDGRDMYMEAEGGDGYMAPENGY 441
Score = 37.7 bits (86), Expect = 0.85
Identities = 39/171 (22%), Positives = 56/171 (31%), Gaps = 35/171 (20%)
Query: 350 ERDHERDVEHDRYREKDK----------DYEVGETDRGRSHDR-----------GADYDH 388
E +HERD+ H Y+ D D E G T +G R GAD +
Sbjct: 150 EYEHERDM-HSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNI 208
Query: 389 VESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRGRGQYDEG 448
S + + P H R ++ R E D + R R +
Sbjct: 209 RHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRS 268
Query: 449 DDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHDYHRSERSHSRE 499
D+ D+ R +SK +DRDR R R+ R R+
Sbjct: 269 RDK-------------DERRRSRERSKDKDRDRKRRSSRSRERARRERERK 306
Score = 36.2 bits (82), Expect = 2.5
Identities = 50/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 329 RGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRSHDRGADYDH 388
R RE +R R R++ R E + E + + G+ + R +YD
Sbjct: 59 RAETREERMERKR---REKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVAR-VNYDT 114
Query: 389 VESK--HEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRG----- 441
ESK E E +G I+R + + + G+ + EH+ D ++ Y+H G
Sbjct: 115 TESKLRREFEVYGPIKRIHMV---YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171
Query: 442 --------RGQYDEG---------------------------DDRGDYNQYPD-----HA 461
RG+ +G DD Y++ P H
Sbjct: 172 RRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHR 231
Query: 462 KMEDDHHTERA-KSKSRDRDRNRDKDHDYHRSERSHSREYD 501
+ D ER +S+ RD++R R + R RS SR+ D
Sbjct: 232 DRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKD 272
>gb|AAA36573.1| ribonucleoprotein antigen
Length = 428
Score = 315 bits (808), Expect = 2e-84
Identities = 179/394 (45%), Positives = 235/394 (59%), Gaps = 62/394 (15%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKS 273
RTV WRPRRLGGGLG TR GG +VN RHSGR+ +ER DRDRE+
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSR----------YDERDRDRDRERE 231
Query: 274 -RERGKDRDRERERSRERSSD-KARDRDRDHREDRHHRDRDRNRDRDRGKERDRERDRG- 330
RER ++RD+ERER R RS D + R R RD E R R+R +++DRDR + R R+R
Sbjct: 232 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR 291
Query: 331 RDRERGRD-----------------------------------RDRGRERDRDRERDH-- 353
R+RER + ++GR+RDR+R R H
Sbjct: 292 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS 351
Query: 354 --ERDVEHDRYREKDKDYEVGE--TDRGRSHDRG 383
ER + DR R++D++++ GE ++RGR RG
Sbjct: 352 ERERRRDRDRDRDRDREHKRGERGSERGRDEARG 385
Score = 38.5 bits (88), Expect = 0.50
Identities = 46/210 (21%), Positives = 78/210 (36%), Gaps = 46/210 (21%)
Query: 329 RGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRSHDRGADYDH 388
R RE +R R R++ R E + E + + G+ + R +YD
Sbjct: 59 RAETREERMERKR---REKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVAR-VNYDT 114
Query: 389 VESK--HEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRG----- 441
ESK E E +G I+R + + + G+ + EH+ D ++ Y+H G
Sbjct: 115 TESKLRREFEVYGPIKRIHMV---YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171
Query: 442 --------RGQYDEG------------------------DDRGDYNQYPDHAKMEDDHHT 469
RG+ +G R D ++Y + + D
Sbjct: 172 RRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRDRERE 231
Query: 470 ERAKSKSRDRDRNRDKDHDYHRSERSHSRE 499
R +S+ RD++R R + R RS SR+
Sbjct: 232 RRERSRERDKERERRRSRSRDRRRRSRSRD 261
>ref|XP_341858.2| PREDICTED: similar to U1 small nuclear ribonucleoprotein 70 kDa (U1
snRNP 70 kDa) (snRNP70) (U1-70K) [Rattus norvegicus]
Length = 451
Score = 314 bits (805), Expect = 4e-84
Identities = 182/412 (44%), Positives = 240/412 (58%), Gaps = 76/412 (18%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ + EL+ +DPHNDPN GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERG 213
EFE YG IKR+ +V S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVERG
Sbjct: 122 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
Query: 214 RTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGRE-----QQQSGPSRSEEPRVREERHADR 268
RTV WRPRRLGGGLG TR GG +VN RHSGR+ ++ GPS P +R DR
Sbjct: 182 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPS----PLPHRDRDRDR 237
Query: 269 DREKSRERGKDRDRERERSRERSSD---KARDRDRDHREDRHHRDRDRNRDRDRGKERDR 325
+RE+ RER ++RD+ERER R RS D ++R RD+D R R +D++RDR R R R
Sbjct: 238 ERER-RERSRERDKERERRRSRSRDRRRRSRSRDKDERRRSRERSKDKDRDRKRRSSRSR 296
Query: 326 ERDRGRDRERGRD----------------------------------------------- 338
ER R R+RER +
Sbjct: 297 ERAR-RERERKEELRGGGGGGGGGGGGGGGGGGGDMAEPSEAGDGAPDDGPPGELGPEGP 355
Query: 339 ---RDRGRERDRDRERDH--ERDVEHDRYREKDKDYEVGE--TDRGRSHDRG 383
++GR+RDR+R R H ER+ DR R++D++++ GE ++RGR RG
Sbjct: 356 DGPEEKGRDRDRERRRSHRSERERRRDRDRDRDREHKRGERGSERGRDEARG 407
Score = 58.5 bits (140), Expect = 5e-07
Identities = 48/146 (32%), Positives = 60/146 (40%), Gaps = 21/146 (14%)
Query: 225 GGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKSRERGKDRDRER 284
GGG G GGD +G GP P + E+G+DRDRER
Sbjct: 319 GGGGGGGGGGGDMAEPSEAGDGAPDDGPPGELGPE---------GPDGPEEKGRDRDRER 369
Query: 285 ERSRERSSDKARDRDRDHREDRHHRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRE 344
RS ++ RDRDRD RDR+ R +RG ER R+ RG G +D G E
Sbjct: 370 RRSHRSERERRRDRDRD-------RDREHKRG-ERGSERGRDEARGGG---GSGQDNGLE 418
Query: 345 RDRDRERDHERDVE-HDRYREKDKDY 369
RD + E D Y + Y
Sbjct: 419 GLGSDGRDMYMEAEGGDGYMAPENGY 444
Score = 37.7 bits (86), Expect = 0.85
Identities = 39/171 (22%), Positives = 56/171 (31%), Gaps = 35/171 (20%)
Query: 350 ERDHERDVEHDRYREKDK----------DYEVGETDRGRSHDR-----------GADYDH 388
E +HERD+ H Y+ D D E G T +G R GAD +
Sbjct: 150 EYEHERDM-HSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNI 208
Query: 389 VESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRGRGQYDEG 448
S + + P H R ++ R E D + R R +
Sbjct: 209 RHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRS 268
Query: 449 DDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHDYHRSERSHSRE 499
D+ D+ R +SK +DRDR R R+ R R+
Sbjct: 269 RDK-------------DERRRSRERSKDKDRDRKRRSSRSRERARRERERK 306
Score = 36.2 bits (82), Expect = 2.5
Identities = 50/221 (22%), Positives = 81/221 (36%), Gaps = 55/221 (24%)
Query: 329 RGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRSHDRGADYDH 388
R RE +R R R++ R E + E + + G+ + R +YD
Sbjct: 59 RAETREERMERKR---REKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVAR-VNYDT 114
Query: 389 VESK--HEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRG----- 441
ESK E E +G I+R + + + G+ + EH+ D ++ Y+H G
Sbjct: 115 TESKLRREFEVYGPIKRIHMV---YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171
Query: 442 --------RGQYDEG---------------------------DDRGDYNQYPD-----HA 461
RG+ +G DD Y++ P H
Sbjct: 172 RRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHR 231
Query: 462 KMEDDHHTERA-KSKSRDRDRNRDKDHDYHRSERSHSREYD 501
+ D ER +S+ RD++R R + R RS SR+ D
Sbjct: 232 DRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKD 272
>pir||S28147 U1 snRNP 70K protein - Arabidopsis thaliana (fragment)
Length = 303
Score = 309 bits (792), Expect = 1e-82
Identities = 183/339 (53%), Positives = 227/339 (65%), Gaps = 55/339 (16%)
Query: 104 KLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKR 163
KLRLEKG KAAE+L+KYDP+NDPN +GDPYKTLFV+RL+YE++ES+IKREFESYG IKR
Sbjct: 1 KLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKR 60
Query: 164 VRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRR 223
V LVTD +NKP+GYAFIEY+HTRDMKAAYKQAD +++ + ER P RPRR
Sbjct: 61 VHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADDKRLTAEEFWLMWER-ENRPKLRPRR 119
Query: 224 LGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEP-RVREERHADRDREKSRERGKDRDR 282
LGG LGT+RVGG E +G +Q Q S+SEEP R REE REKSRE+GK+R+R
Sbjct: 120 LGGELGTSRVGGGE---EIAGEQQPQGRTSQSEEPSRPREE------REKSREKGKERER 170
Query: 283 ERERSRERSSDKARDRDRDHREDRHHRDRD---RNRDRDRGKERDRERDRGRDRERGRDR 339
RE S E+ +++RDR RED+HHRDRD R+RDRD ++RDR RDRG DR+R RDR
Sbjct: 171 SRELSHEQPRERSRDRP---REDKHHRDRDQGGRDRDRDSRRDRDRTRDRG-DRDR-RDR 225
Query: 340 DRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDR---GRSHDRGADYDHVESKHEKE 396
DRGR+R RDH+R DR R+KD+DYE GE + GRS +R A+Y
Sbjct: 226 DRGRDR---TSRDHDR----DRSRKKDRDYEGGEYEHEGGGRSRERDAEYRG-------- 270
Query: 397 PHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNH 435
EP++ G Y+ D + D D Y+H
Sbjct: 271 ---------EPEETRGYYE---------DDQGDTDRYSH 291
Score = 43.1 bits (100), Expect = 0.020
Identities = 54/200 (27%), Positives = 72/200 (36%), Gaps = 53/200 (26%)
Query: 310 DRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDY 369
+R + R R G E R G + G + +GR + E R+ E ++ REK
Sbjct: 111 NRPKLRPRRLGGELGTSRVGGGEEIAGEQQPQGRT-SQSEEPSRPRE-EREKSREK---- 164
Query: 370 EVGETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHD 429
G+ +R + H + + E RD +D H R ++ G R D D
Sbjct: 165 -------GKERERSRELSHEQPR-------ERSRDRPREDKHHRDRDQGGRDRDRDSRRD 210
Query: 430 PDHYNHYEHQRGRGQYDEGD-DRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRD--KD 486
D R RG D D DRG SRD DR+R KD
Sbjct: 211 RDR------TRDRGDRDRRDRDRG-------------------RDRTSRDHDRDRSRKKD 245
Query: 487 HDYHRSERSH-----SREYD 501
DY E H SRE D
Sbjct: 246 RDYEGGEYEHEGGGRSRERD 265
>ref|XP_308988.2| ENSANGP00000020311 [Anopheles gambiae str. PEST]
gi|55246077|gb|EAA04709.2| ENSANGP00000020311 [Anopheles
gambiae str. PEST]
Length = 434
Score = 309 bits (791), Expect = 2e-82
Identities = 187/439 (42%), Positives = 256/439 (57%), Gaps = 36/439 (8%)
Query: 39 LTANLLKLFEPRPPLEYKPPPEK----RKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L +NLL LF PR P+ Y PPP+K +K G+ F+ F +P + +PP VET
Sbjct: 5 LPSNLLALFAPRDPIPYLPPPDKLPHEKKSQGYLGVGAFLDCFEDPKD---TPPPTRVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + R E+ A K E+ +DP+ + DP+KTLFVAR++Y+T+ES+++RE
Sbjct: 62 REERVERRRRERAEQVAYKLEREIATWDPNQLLEATEDPFKTLFVARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ ++ D ++ KPRGYAFIEY H RDM AAYK ADG+KI+G+RVLVDVER R
Sbjct: 122 FEIYGNIKKIIMINDKDTGKPRGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDREKSR 274
TV W PRRLGGGLG TR GG +VN +HSGRE + R RE +R+RE R
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGPDVNIKHSGREDNE---------RERERYRLERERE-DR 231
Query: 275 ERGKDRDRERERSRERSSDKARDRDRDHR---EDRHHRDRDRNRD-RDRGKERDRERDRG 330
+R ++RDR ER ++RDRDR HR +DR R R R R+ DRG ++ERDR
Sbjct: 232 DR-RERDRPENNRFERRRSRSRDRDRRHRSRSKDRSRRRRSREREVDDRGDRWEKERDRE 290
Query: 331 RDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDK-DYEVGETDRGRSHDRGADYDHV 389
RDR R RD+DR R+R R R+RD H++ ++D+ + + GE G GA +
Sbjct: 291 RDRSRDRDKDRKRKRSRSRDRDRAEKSRHNKRGDRDRGERDRGERGGGGGGGGGASGNGG 350
Query: 390 ESKHEKEP---HGEIERDYEP----DDHHGRYKEPGHGHRHADPEHDPDHYN----HYEH 438
+ E++P GEI+ EP D+ +Y + ++ D E + N H
Sbjct: 351 AERKERKPEFREGEIKIKEEPIDDYPDYSAQYSQYQSQVKYEDGEEEKYRPNEPPPHLRA 410
Query: 439 QRGRGQY--DEGDDRGDYN 455
GRG + DD GDY+
Sbjct: 411 DNGRGYVTGNGDDDDGDYD 429
Score = 42.0 bits (97), Expect = 0.045
Identities = 50/196 (25%), Positives = 79/196 (39%), Gaps = 17/196 (8%)
Query: 316 DRDRGKERDR---ERDRGRDRERGRDRDRGRERDRDRER-DHERDVEHDRYREKDKDYEV 371
D+D GK R E + RD G++ D R D ER + + +
Sbjct: 136 DKDTGKPRGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERARTVKGWLPRRLGGGL 195
Query: 372 GETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYK-EPGHGHRHADPEHDP 430
G T RG +++ E+E + +ER+ E D R + E R D
Sbjct: 196 GGTRRGGPDVNIKHSGREDNERERERY-RLEREREDRDRRERDRPENNRFERRRSRSRDR 254
Query: 431 DHYNHYEHQ----RGRGQYDEGDDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKD 486
D + + R R + E DDRGD + E D +R++ + +DR R R +
Sbjct: 255 DRRHRSRSKDRSRRRRSREREVDDRGD------RWEKERDRERDRSRDRDKDRKRKRSRS 308
Query: 487 HDYHRSERS-HSREYD 501
D R+E+S H++ D
Sbjct: 309 RDRDRAEKSRHNKRGD 324
>ref|XP_623789.1| PREDICTED: similar to ENSANGP00000028567 [Apis mellifera]
Length = 409
Score = 298 bits (764), Expect = 2e-79
Identities = 184/422 (43%), Positives = 242/422 (56%), Gaps = 45/422 (10%)
Query: 39 LTANLLKLFEPRPPLEYKPP----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L NLL LF PR P+ Y PP P ++K G+ F+ F +P + +PP VET
Sbjct: 5 LPPNLLALFAPRDPIPYLPPVSKLPHEKKNGGYIGVGGFLKYFEDPKD---TPPPVRVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + R E+ A K +E+ +DP N++ DP+KTLFVAR++Y+T+ES+++RE
Sbjct: 62 REERLERRRRERAEQVAYKLEQEIAVWDPAGILNVTADPFKTLFVARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG +K++ ++ + + KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDVER R
Sbjct: 122 FEVYGPVKKIVVIHNTINGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREER-HADRDREK- 272
TV W PRRLGGGLG TR GG +VN +HSGRE + R R RE DRDR++
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGPDVNIKHSGREDNERERERYRLERERENSGRLDRDRDRD 241
Query: 273 --SRERGKDRDRERERSRERSSDKARDRDRDHRED-------RHHRDRD-RNRDRDRGKE 322
RER + RDR+R R+R RS D+ R R RD D R R RD R+RDR+R +E
Sbjct: 242 RLDRERRRSRDRKR-RTRSRSRDRKRRRSRDRLPDPDIEEIQRDERPRDRRDRDRERDRE 300
Query: 323 RDRERDRGRDRERGRDRDRGRE-RDRDRERDHERDVEHDRYREKDKDYEVGE------TD 375
RDR+R R R +R RDRDR R+ RDRDRER +D DR E K+ + E D
Sbjct: 301 RDRKRRRSRSTDRDRDRDRKRDKRDRDRERRDRKD-RGDRQEEDTKEIRIKEEPLDDYPD 359
Query: 376 RGRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNH 435
+ Y K+E + E+E Y R + DP YN+
Sbjct: 360 YSNTFSTSGSY-FTAVKYEDDNDQEVEEKY----------------RIPEGRPDPPPYNN 402
Query: 436 YE 437
Y+
Sbjct: 403 YD 404
>ref|XP_565448.1| ENSANGP00000028567 [Anopheles gambiae str. PEST]
gi|55246076|gb|EAL41962.1| ENSANGP00000028567 [Anopheles
gambiae str. PEST]
Length = 398
Score = 294 bits (753), Expect = 4e-78
Identities = 174/409 (42%), Positives = 234/409 (56%), Gaps = 30/409 (7%)
Query: 39 LTANLLKLFEPRPPLEYKPPPEK----RKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L +NLL LF PR P+ Y PPP+K +K G+ F+ F +P + +PP VET
Sbjct: 5 LPSNLLALFAPRDPIPYLPPPDKLPHEKKSQGYLGVGAFLDCFEDPKD---TPPPTRVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + R E+ A K E+ +DP+ + DP+KTLFVAR++Y+T+ES+++RE
Sbjct: 62 REERVERRRRERAEQVAYKLEREIATWDPNQLLEATEDPFKTLFVARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ ++ D ++ KPRGYAFIEY H RDM AAYK ADG+KI+G+RVLVDVER R
Sbjct: 122 FEIYGNIKKIIMINDKDTGKPRGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREER-HADRDRE-- 271
TV W PRRLGGGLG TR GG +VN +HSGRE + R R RE+R H +R
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGPDVNIKHSGREDNERERERYRLEREREDRDHLNRHTNVL 241
Query: 272 -----KSRERGKDRDRERERSRERSSDKARDRDRDHREDRHHRDRDRNRDRDRGKERDRE 326
R G +R R R R R+R R R R R R R+R D DRG ++E
Sbjct: 242 CLLLPPPRSTGFERRRSRSRDRDR-----RHRSRSKDRSRRRRSREREVD-DRGDRWEKE 295
Query: 327 RDRGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRSHDRGADY 386
RDR RDR R RD+DR R+R R R+RD H++ ++D+ GE DR +R ++
Sbjct: 296 RDRERDRSRDRDKDRKRKRSRSRDRDRAEKSRHNKRGDRDR----GERDRAERKERKPEF 351
Query: 387 DHVESKHEKEP---HGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDH 432
E K ++EP + + Y +Y E G ++ P P H
Sbjct: 352 REGEIKIKEEPIDDYPDYSAQYSQYQSQVKY-EDGEEEKYR-PNEPPPH 398
Score = 41.6 bits (96), Expect = 0.059
Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 26/205 (12%)
Query: 316 DRDRGKERDR---ERDRGRDRERGRDRDRGRERDRDRER-DHERDVEHDRYREKDKDYEV 371
D+D GK R E + RD G++ D R D ER + + +
Sbjct: 136 DKDTGKPRGYAFIEYEHERDMHAAYKHADGKKIDGKRVLVDVERARTVKGWLPRRLGGGL 195
Query: 372 GETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRY-----------KEPGHG 420
G T RG +++ E+E + +ER+ E DH R+ + G
Sbjct: 196 GGTRRGGPDVNIKHSGREDNERERERY-RLEREREDRDHLNRHTNVLCLLLPPPRSTGFE 254
Query: 421 HRHA-DPEHDPDHYNHYEHQ--RGRGQYDEGDDRGDYNQYPDHAKMEDDHHTERAKSKSR 477
R + + D H + + + R R + E DDRGD + E D +R++ + +
Sbjct: 255 RRRSRSRDRDRRHRSRSKDRSRRRRSREREVDDRGD------RWEKERDRERDRSRDRDK 308
Query: 478 DRDRNRDKDHDYHRSERS-HSREYD 501
DR R R + D R+E+S H++ D
Sbjct: 309 DRKRKRSRSRDRDRAEKSRHNKRGD 333
>gb|AAH97714.1| Unknown (protein for IMAGE:6871460) [Xenopus laevis]
Length = 351
Score = 290 bits (742), Expect = 7e-77
Identities = 164/326 (50%), Positives = 210/326 (64%), Gaps = 26/326 (7%)
Query: 39 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVE 93
L NLL LF PR P+ Y PP EK P G+A ++ +F +P + +PP E
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 94 TPAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKR 153
T ER R + ++E+ EL+ +DPHND N GD +KTLFVAR++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 154 EFESYGAIKRVRLVTDAESN---KPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDV 210
EFE YG IKR+ +V + S KPRGYAFIEY H RDM +AYK ADG+KI+GRRVLVDV
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 181
Query: 211 ERGRTVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERHADRDR 270
ERGRTV WRPRRLGGGLG TR GG +VN RHSGR+ R E R DR R
Sbjct: 182 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRE------RERDR-R 234
Query: 271 EKSRERGKD-RDRERERSRERSSDKARDRDRDHREDRHHRDRDRNRDRDRGKERDRERDR 329
E+SRER K+ R+R R RSRER R R R ++ R R++++D+++ K++D +DR
Sbjct: 235 ERSREREKEPRERRRSRSRER-----RRRSRSREKEERKRSREKSKDKEKEKDKDN-KDR 288
Query: 330 GRDRERGRDRDRGRERDRDRERDHER 355
R R R R R+R RERDRDRE+ ER
Sbjct: 289 DRKR-RSRSRERKRERDRDREKKEER 313
Score = 39.7 bits (91), Expect = 0.22
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 35/201 (17%)
Query: 329 RGRDRERGRDRDRGRERDRDRERDHERDVE-HDRYREKDKDYEVGETDRGRSHDRGADYD 387
R RE +R R RE+ R++D E +++ D + +++ + +T +YD
Sbjct: 59 RAETREERMERKR-REKIERRQQDVENELKIWDPHNDQNAQGDAFKT----LFVARVNYD 113
Query: 388 HVESK--HEKEPHGEIERDYEPDDHHGRYKEPGHGHRHADPEHDPDHYNHYEH------- 438
ESK E E +G I+R + + G+ + EH+ D ++ Y+H
Sbjct: 114 TTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKID 173
Query: 439 --------QRGR----------GQYDEGDDRGDYNQYPDHAKMED-DHHTERAKSKSRD- 478
+RGR G G RG + H+ +D + ER + + RD
Sbjct: 174 GRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRERERDR 233
Query: 479 RDRNRDKDHDYHRSERSHSRE 499
R+R+R+++ + RS SRE
Sbjct: 234 RERSREREKEPRERRRSRSRE 254
Score = 39.7 bits (91), Expect = 0.22
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 327 RDRGRDRERGRDRDRGRERDRDRERDHERDVEHDRYREKDKDYEVGETDRGRSHDRGADY 386
R GRD D R ERDR+RERD R R ++++ E E R RS +R
Sbjct: 212 RHSGRD-----DTSRYDERDRERERDR-------RERSREREKEPRERRRSRSRER-RRR 258
Query: 387 DHVESKHEKEPHGEIERDYEPD-DHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRGRGQY 445
K E++ E +D E + D + ++ R + + + D + +R +
Sbjct: 259 SRSREKEERKRSREKSKDKEKEKDKDNKDRDRKRRSRSRERKRERDRDREKKEERVEAEV 318
Query: 446 DEGDD 450
E DD
Sbjct: 319 PEADD 323
Score = 35.8 bits (81), Expect = 3.2
Identities = 41/166 (24%), Positives = 62/166 (36%), Gaps = 29/166 (17%)
Query: 350 ERDHERDVEHDRYREKDK----------DYEVGETDRGRSHDR-----------GADYDH 388
E +HERD+ H Y+ D D E G T +G R GAD +
Sbjct: 153 EYEHERDM-HSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNI 211
Query: 389 VESKHEKEPHGEIERDYEPD-DHHGRYKEPGHGHRHADPEHDPDHYNHYEHQRGRGQYDE 447
S + + ERD E + D R +E R +P + +R R + E
Sbjct: 212 RHSGRDDTSRYD-ERDRERERDRRERSRE-----REKEPRERRRSRSRERRRRSRSREKE 265
Query: 448 GDDRGDYNQYPDHAKMEDDHHTERAKSKSRDRDRNRDKDHDYHRSE 493
R + + D+ K +SR R+R R++D D + E
Sbjct: 266 ERKRSREKSKDKEKEKDKDNKDRDRKRRSRSRERKRERDRDREKKE 311
>gb|EAL32844.1| GA21298-PA [Drosophila pseudoobscura]
Length = 457
Score = 288 bits (737), Expect = 3e-76
Identities = 179/446 (40%), Positives = 248/446 (55%), Gaps = 56/446 (12%)
Query: 39 LTANLLKLFEPRPPLEYKPP----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L NLL LF R P+ + PP P ++K G+A F++ F +P E +P VET
Sbjct: 5 LPPNLLALFAARDPIPFMPPVDKLPHEKKSRGYLGVAHFMTDFEDP---EDTPLPKTVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + + E+ A K E+ +DP N + DP++TLF+AR++Y+T+ES+++RE
Sbjct: 62 RQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ L+ D ES KP+GYAFIEY H RDM AAYK ADG+KI+ +RVLVDVER R
Sbjct: 122 FEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERH--------- 265
TV W PRRLGGGLG TR GG++VN +HSGRE + R R RE+R
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGAGGRSNNG 241
Query: 266 --------------ADRDREKSRERGKDRDRE-----------RERSRERSSDKARDRDR 300
ADR R +SR+R +DR+R+ R RSRER +A R+R
Sbjct: 242 VEPRGAPGGRPAFGADRRRSRSRDR-RDRERDRGRVAVAGNRSRSRSRERRKRRAGSRER 300
Query: 301 ---DHREDRHHRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDV 357
R DR RDR+R+RDRDR +ER++ + R + RER R+R RER RDR +D ER
Sbjct: 301 YDEFDRRDRRERDRERDRDRDRDREREKRKKRSKSRERDSSRER-RERKRDR-KDRERGG 358
Query: 358 EHDRYREKDKDY---EVGETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDD-HHGR 413
+E+ D+ ++ + D +D+ + ++E E E Y P HH
Sbjct: 359 VAGDVKERKPDFREMDIIKIKEEPVDDGYPSFDYQNAAIKREVDDEHEEKYRPPPAHHNM 418
Query: 414 YKEP-----GHGHRHADPEHDPDHYN 434
+ P G + +A+P P+ N
Sbjct: 419 FSVPPPPIIGRNNSNANPNAAPNPDN 444
>gb|AAA28859.1| U1 70K small nuclear ribonucleoprotein, (first expressed exon)
Length = 448
Score = 284 bits (727), Expect = 4e-75
Identities = 169/434 (38%), Positives = 239/434 (54%), Gaps = 47/434 (10%)
Query: 39 LTANLLKLFEPRPPLEYKPP----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L NLL LF R P+ + PP P ++K G+A+F++ F +P + +P VET
Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKD---TPLPKTVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + + E+ A K E+ +DP N + DP++TLF+AR++Y+T+ES+++RE
Sbjct: 62 RQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ L+ D ES KP+GYAFIEY H RDM AAYK ADG+KI+ +RVLVDVER R
Sbjct: 122 FEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERH--------- 265
TV W PRRLGGGLG TR GG++VN +HSGRE + R R RE+R
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSN 241
Query: 266 -----------ADRDREKSRERGKDRDRERERSRERSSDKARDRDRDHR----------- 303
A+R R +SRER +DR+R+R R SS ++R R R+ R
Sbjct: 242 GLDARPGRGFGAERRRSRSRER-RDRERDRGRGAVASSGRSRSRSRERRKRRAGSRERYD 300
Query: 304 --EDRHHRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDVEHDR 361
+ R RDR+R RDRDR +E+ ++R + R+RE R+R + RDRER +
Sbjct: 301 EFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKE 360
Query: 362 YREKDKDYEVGETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDD-HHGRYKEP--- 417
+ +D +V + D +D+ + ++E E E Y P HH + P
Sbjct: 361 RKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPAHHNMFSVPPPP 420
Query: 418 --GHGHRHADPEHD 429
G G+ +P D
Sbjct: 421 ILGRGNASTNPNPD 434
>gb|AAF52471.1| CG8749-PA [Drosophila melanogaster] gi|19528491|gb|AAL90360.1|
RE35772p [Drosophila melanogaster]
gi|17137278|ref|NP_477205.1| CG8749-PA [Drosophila
melanogaster] gi|16769660|gb|AAL29049.1| LD46049p
[Drosophila melanogaster]
gi|13638469|sp|P17133|RU17_DROME U1 small nuclear
ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70)
Length = 448
Score = 283 bits (725), Expect = 7e-75
Identities = 171/434 (39%), Positives = 240/434 (54%), Gaps = 47/434 (10%)
Query: 39 LTANLLKLFEPRPPLEYKPP----PEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVET 94
L NLL LF R P+ + PP P ++K G+A+F++ F +P + +P VET
Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKD---TPLPKTVET 61
Query: 95 PAERRARVHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYETTESRIKRE 154
ER R + + E+ A K E+ +DP N + DP++TLF+AR++Y+T+ES+++RE
Sbjct: 62 RQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRRE 121
Query: 155 FESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGR 214
FE YG IK++ L+ D ES KP+GYAFIEY H RDM AAYK ADG+KI+ +RVLVDVER R
Sbjct: 122 FEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERAR 181
Query: 215 TVPNWRPRRLGGGLGTTRVGGDEVNQRHSGREQQQSGPSRSEEPRVREERH--------- 265
TV W PRRLGGGLG TR GG++VN +HSGRE + R R RE+R
Sbjct: 182 TVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSN 241
Query: 266 -----------ADRDREKSRERGKDRDRE------------RERSRERSSDKARDRDR-D 301
A+R R +SRER +DR+R+ R RSRER +A R+R D
Sbjct: 242 GLDARPGRGFGAERRRSRSRER-RDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYD 300
Query: 302 HREDRHHRDRDRNRDRDRGKERDRERDRGRDRERGRDRDRGRERDRDRERDHERDVEHDR 361
+ R RDR+R RDRDR +E+ ++R + R+RE R+R + RDRER +
Sbjct: 301 EFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKE 360
Query: 362 YREKDKDYEVGETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDD-HHGRYKEP--- 417
+ +D +V + D +D+ + ++E E E Y P HH + P
Sbjct: 361 RKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPAHHNMFSVPPPP 420
Query: 418 --GHGHRHADPEHD 429
G G+ +P D
Sbjct: 421 ILGRGNASTNPNPD 434
Score = 34.7 bits (78), Expect = 7.2
Identities = 47/204 (23%), Positives = 69/204 (33%), Gaps = 23/204 (11%)
Query: 304 EDRHHRDRDRNRDRDRGKERDRER-----DRGRDRERGRDRDRGRERDRDRERDHERDVE 358
E H RD GK+ D +R +R R + R G R ++ +++
Sbjct: 149 EYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIK 208
Query: 359 HDRYREKDKDYEVGETDRGRSHDRGADYDHVESKHEKEPHGEIERDYEPDDHHGRYKEPG 418
H + +++ E +R R G G D P G +
Sbjct: 209 HSGREDNERERERYRLEREREDREGPG----------RGGGSNGLDARPGRGFGAERRRS 258
Query: 419 HGHRHADPEHDPDHYNHYEHQRGRGQYDEGDDR--GDYNQYPDHAKMEDDHHTERAKSKS 476
D E D + R R + E R G +Y E D R + +
Sbjct: 259 RSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYD-----EFDRRDRRDRERE 313
Query: 477 RDRDRNRDKDHDYHRS-ERSHSRE 499
RDRDR R+K +S ER SRE
Sbjct: 314 RDRDREREKKKKRSKSRERESSRE 337
>gb|AAD12776.1| U1 snRNP 70K truncated protein [Arabidopsis thaliana]
gi|1354468|gb|AAD12774.1| U1 snRNP 70K truncated protein
[Arabidopsis thaliana] gi|30693345|ref|NP_850676.1| U1
small nuclear ribonucleoprotein 70 (U1-70k) [Arabidopsis
thaliana]
Length = 204
Score = 279 bits (714), Expect = 1e-73
Identities = 131/162 (80%), Positives = 147/162 (89%)
Query: 3 DPLLRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKR 62
DP LRN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKPPPEKR
Sbjct: 6 DPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKR 65
Query: 63 KCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYD 122
KCPP TGMAQFVS FAEPG+PEY+PP P VE P+++R R+HKLRLEKG KAAE+L+KYD
Sbjct: 66 KCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYD 125
Query: 123 PHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRV 164
P+NDPN +GDPYKTLFV+RL+YE++ES+IKREFESYG IKRV
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 971,507,555
Number of Sequences: 2540612
Number of extensions: 49928604
Number of successful extensions: 680417
Number of sequences better than 10.0: 16470
Number of HSP's better than 10.0 without gapping: 8664
Number of HSP's successfully gapped in prelim test: 8300
Number of HSP's that attempted gapping in prelim test: 257960
Number of HSP's gapped (non-prelim): 113991
length of query: 502
length of database: 863,360,394
effective HSP length: 132
effective length of query: 370
effective length of database: 527,999,610
effective search space: 195359855700
effective search space used: 195359855700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 77 (34.3 bits)
Medicago: description of AC148484.9