BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148484.3 + phase: 0 /pseudo
         (341 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00052374.2| COG3685: Uncharacterized protein conserved in...    34  5.5
ref|ZP_00243523.1| hypothetical protein Rgel02002041 [Rubrivivax...    33  9.4

>ref|ZP_00052374.2| COG3685: Uncharacterized protein conserved in bacteria
           [Magnetospirillum magnetotacticum MS-1]
          Length = 169

 Score = 34.3 bits (77), Expect = 5.5
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 125 LKNRRAL----LQIQAPKQERVERQDQVQAMMAFHIVVTVVQRVHLMLAMKTNRNQLETR 180
           LKN  AL    LQI   + ER+ R  +++  +  HI  T  QR  L  A+++  +   T 
Sbjct: 13  LKNTHALEMQALQIMERQVERLTRYPEMEEALRRHIEETHGQRTRLEEALQSLGDSPSTL 72

Query: 181 REALTS------CLLMEPTRRTILLDPFLNHLFLEILLSRYLQLILI 221
           +E           L   P +  IL + + NH F    ++ Y  L+ I
Sbjct: 73  KEGFLGFVGNMMALGHTPAQDEILKNTYANHAFENFEIAAYESLLTI 119


>ref|ZP_00243523.1| hypothetical protein Rgel02002041 [Rubrivivax gelatinosus PM1]
          Length = 179

 Score = 33.5 bits (75), Expect = 9.4
 Identities = 26/82 (31%), Positives = 39/82 (46%), Gaps = 6/82 (7%)

Query: 108 KLQSLKGRDLMER-IRIHLKNRRALLQIQAPKQERVERQDQV-----QAMMAFHIVVTVV 161
           K Q   GRDL E+  R+  +       ++A +Q+ V + DQ      QA++    V+TV 
Sbjct: 91  KAQREAGRDLREQQARLFTQPTVDAQAVEALRQQMVAQHDQASRRMSQALLDASRVLTVE 150

Query: 162 QRVHLMLAMKTNRNQLETRREA 183
           QRV L   MK    ++E    A
Sbjct: 151 QRVQLAERMKARHERMERHHRA 172


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.335    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,039,490
Number of Sequences: 2540612
Number of extensions: 19075217
Number of successful extensions: 78406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 78406
Number of HSP's gapped (non-prelim): 2
length of query: 341
length of database: 863,360,394
effective HSP length: 128
effective length of query: 213
effective length of database: 538,162,058
effective search space: 114628518354
effective search space used: 114628518354
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 75 (33.5 bits)