BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148484.2 - phase: 0
(192 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 63 4e-09
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 62 7e-09
gb|AAC13594.1| contains similarity to reverse transcriptase-like... 61 2e-08
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 60 3e-08
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 60 3e-08
emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|49720... 59 6e-08
dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis ... 58 1e-07
gb|AAF79804.1| T32E20.19 [Arabidopsis thaliana] gi|25403513|pir|... 57 2e-07
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 56 5e-07
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 56 6e-07
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 55 1e-06
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 54 2e-06
gb|AAC18922.1| putative reverse transcriptase [Arabidopsis thali... 54 2e-06
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 54 3e-06
gb|AAF23283.1| putative non-LTR reverse transcriptase [Arabidops... 54 3e-06
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 52 7e-06
gb|AAC27408.1| putative non-LTR retroelement reverse transcripta... 52 9e-06
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 50 3e-05
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 50 3e-05
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 49 1e-04
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 63.2 bits (152), Expect = 4e-09
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSND-DSNIGTVFALLD--MLTTKQRVVFAATVWS 59
H F C FA WRLS S+ SN+ + NI + LL +T Q+++ +W
Sbjct: 717 HALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLLWR 776
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEW-QIANTKTPAESRAATTAPPTQLLSNSAE 118
+WK RN V+ ++ E ++ V RA+ EW T+ P TTA
Sbjct: 777 IWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPKRTTAA---------- 826
Query: 119 VNSSDDGLVLWQKPTSGRYKCNVDAVFS 146
G W KP KCN DA F+
Sbjct: 827 ------GNTTWVKPQMPYIKCNFDASFN 848
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 62.4 bits (150), Expect = 7e-09
Identities = 49/170 (28%), Positives = 70/170 (40%), Gaps = 21/170 (12%)
Query: 3 HLFFACSFAIQVWRLSGL-WSDVSAANSNDDSNIGTVFALL--DMLTTKQRVVFAATVWS 59
H+ F C +A +W LS W + + + NI + + L T+QR+ +W
Sbjct: 1412 HVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWR 1471
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEW-QIANTKTPAESRAATTAPPTQLLSNSAE 118
LWK RN V+ +E + VV + + EW Q N + A S
Sbjct: 1472 LWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSVNRREDA----------------SVL 1515
Query: 119 VNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLA 168
SS V W+KP KCN DA F+ N N G I E A ++A
Sbjct: 1516 TRSSHRANVRWKKPVFPLVKCNFDAGFTGN-NTQSTGGWIIPETKALLIA 1564
>gb|AAC13594.1| contains similarity to reverse transcriptase-like proteins
[Arabidopsis thaliana] gi|7488297|pir||T01193 reverse
transcriptase homolog F21E10.8 - Arabidopsis thaliana
Length = 301
Score = 60.8 bits (146), Expect = 2e-08
Identities = 42/157 (26%), Positives = 71/157 (44%), Gaps = 18/157 (11%)
Query: 1 MAHLFFACSFAIQVWRLSGLWSDVSAANSND-DSNIGTVFALLDML-TTKQRVVFAATVW 58
+ H+ F C +A+++WRLS L + ++D + NI + A + TT+Q+V+ +W
Sbjct: 37 ICHVLFTCPYAMRIWRLSNLPQLTGLSITHDVEENISLLDAYYNNNHTTQQKVIHFWLIW 96
Query: 59 SLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAE 118
+WK N V + E ++V+ + + +W T Q +S A
Sbjct: 97 KIWKAHNNLVLNNYRECPSMVIQQTVAEVYDW-------------TTIINGMQAMSLPAR 143
Query: 119 VNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIG 155
+ + G W K + KCN DA F N N G+G
Sbjct: 144 IQTK--GKTSWMKHAAPFVKCNFDAGFQEN-NEQGMG 177
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 60.1 bits (144), Expect = 3e-08
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 22/177 (12%)
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSNDDSNIGTVFALLDM--LTTKQRVVFAATVWSL 60
H+ F C A QVW ++ L S S +++ +N+ + L L R V +W L
Sbjct: 1074 HILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFL 1133
Query: 61 WKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEVN 120
WK+RN ++E + +VD+A EW A T + +
Sbjct: 1134 WKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLK--------------- 1178
Query: 121 SSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSFPCLH 177
+ W P G KCN+ +S + +G + D +G +L SF +H
Sbjct: 1179 -----ITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVH 1230
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 60.1 bits (144), Expect = 3e-08
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 22/177 (12%)
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSNDDSNIGTVFALLDM--LTTKQRVVFAATVWSL 60
H+ F C A QVW ++ L S S +++ +N+ + L L R V +W L
Sbjct: 1095 HILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFL 1154
Query: 61 WKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEVN 120
WK+RN ++E + +VD+A EW A T + +
Sbjct: 1155 WKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLK--------------- 1199
Query: 121 SSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSFPCLH 177
+ W P G KCN+ +S + +G + D +G +L SF +H
Sbjct: 1200 -----ITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVH 1251
>emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|4972055|emb|CAB43923.1|
putative protein [Arabidopsis thaliana]
gi|67633766|gb|AAY78807.1| putative reverse
transcriptase/RNA-dependent DNA polymerase [Arabidopsis
thaliana] gi|15233451|ref|NP_194638.1| reverse
transcriptase, putative / RNA-dependent DNA polymerase,
putative [Arabidopsis thaliana] gi|7485741|pir||T08964
hypothetical protein F19B15.120 - Arabidopsis thaliana
Length = 575
Score = 59.3 bits (142), Expect = 6e-08
Identities = 54/188 (28%), Positives = 76/188 (39%), Gaps = 27/188 (14%)
Query: 3 HLFFACSFAIQVWRLS-------GLWSDVSAANSNDDSNIGTVFALLDMLTTKQRVVFAA 55
HL F C+FA W +S G W+D N N+G + K +
Sbjct: 307 HLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWE----KASQLVPW 362
Query: 56 TVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSN 115
+W LWK+RN V+ A V+ RA + EW+I +T AES
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRI---RTEAES-----------CGT 408
Query: 116 SAEVNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSFPC 175
+VN S G W+ P KCN DA ++ + R GIG + +E+G + P
Sbjct: 409 KPQVNRSSCGR--WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPK 466
Query: 176 LHQVTVGE 183
L V E
Sbjct: 467 LKSVLEAE 474
>dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis thaliana]
gi|15230827|ref|NP_189164.1| hypothetical protein
[Arabidopsis thaliana]
Length = 343
Score = 58.2 bits (139), Expect = 1e-07
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 16/168 (9%)
Query: 3 HLFFACSFAIQVWRLSGL-WSDVSAANSNDDSNIGTVFALLDMLTTKQRVVFAATV---W 58
HLFF C +A QVWR SG+ ++ ++ + + L L +Q +F + W
Sbjct: 68 HLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELL--LSSCLANRQPQLFNLAIWILW 125
Query: 59 SLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAE 118
LWK RN V++ + + RAR + EW+ NT + ++ +S+
Sbjct: 126 RLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQV----------HSSR 175
Query: 119 VNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFV 166
WQ+P S K N D F+ G + DE G ++
Sbjct: 176 HQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYM 223
>gb|AAF79804.1| T32E20.19 [Arabidopsis thaliana] gi|25403513|pir||E86489 protein
T32E20.19 [imported] - Arabidopsis thaliana
Length = 957
Score = 57.4 bits (137), Expect = 2e-07
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 1 MAHLFFACSFAIQVWRLSGLWSDVSAANSND-DSNIGTVFALL--DMLTTKQRVVFAATV 57
+ H+ F +A W+L+ L SND + NI + + + LT +Q+++ +
Sbjct: 791 ICHVLFNYPYATTTWKLAKLSYLSGHTFSNDVEENISVLIDSISNNNLTEQQKLLPFWLI 850
Query: 58 WSLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSA 117
+ +WK RN V+ + ++ VV ++ V + EW I ATT PP LS A
Sbjct: 851 FRIWKARNNYVFNKFRKCSSKVVSQSEVDVNEWII--NMCERRGNTATTRPP---LSQKA 905
Query: 118 EVNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEG 163
W KPT KCN +A N ++ G I D EG
Sbjct: 906 S----------WTKPTVSFVKCNFNAGLHKNTTQSTGGWIIRDPEG 941
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 56.2 bits (134), Expect = 5e-07
Identities = 45/174 (25%), Positives = 72/174 (40%), Gaps = 17/174 (9%)
Query: 3 HLFFACSFAIQVWRLSGL-WSDVSAANSNDDSNIGTVFALLD--MLTTKQRVVFAATVWS 59
H+ F CS A QVW LSG+ S NS+ +NI + L ++ + + + +W
Sbjct: 1098 HVLFTCSLARQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWR 1157
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEV 119
LWK+R+ +E +++ R + EW +A + T SA
Sbjct: 1158 LWKNRDKLFFEGTIFSPLKSIEKIRDDVQEWFLAQALVASVDAGETVC--------SAPC 1209
Query: 120 NSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSF 173
SS W+ P G KCN+ V+S G + D+ G +L +F
Sbjct: 1210 PSS------WEPPPLGWVKCNISGVWSGKKRVCGGAWVLRDDHGKVLLHSRRAF 1257
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411640|pir||H84529 hypothetical protein
At2g15510 [imported] - Arabidopsis thaliana
Length = 1138
Score = 55.8 bits (133), Expect = 6e-07
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 3 HLFFACSFAIQVWRLSGLWS-DVSAANSNDDSNIGTVFALLDMLTTKQRVV--FAATVWS 59
H+ F CS A QVW LSG+ + + N++ +NI +F L M+ V + +W
Sbjct: 872 HVLFTCSMARQVWALSGVPTPEFGFQNASIFANIQFLFELKKMILVPDLVKRSWPWVLWR 931
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEV 119
LWK+RN ++ +T + + + EW A ++ +S S E
Sbjct: 932 LWKNRNKLFFDGITFCPLNSIVKIQEDTLEWFQAQSQIR--------------VSESEEG 977
Query: 120 NSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSF 173
W+ P G KCN+ + +S G + DE G+ +L +F
Sbjct: 978 QRVIPFTHSWEPPPEGWVKCNIGSAWSGKKKVCGGAWVLRDEHGSVILHSRRAF 1031
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 54.7 bits (130), Expect = 1e-06
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 23/173 (13%)
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSNDDSNIGTVFALLDM--LTTKQRVVFAATVWSL 60
HL F C FA QVW LS + + + ++ SNI V + R V +W +
Sbjct: 1048 HLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWEI 1107
Query: 61 WKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEVN 120
WK+RN +++ ++ +V +A W A K +S V+
Sbjct: 1108 WKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEK------------------SSGGVS 1149
Query: 121 SSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSF 173
S+ W P +G KCN+ +S G+ + D G +L S+
Sbjct: 1150 PSEH---KWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSRRSY 1199
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 53.9 bits (128), Expect = 2e-06
Identities = 41/173 (23%), Positives = 68/173 (38%), Gaps = 23/173 (13%)
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSNDDSNIGTVFALLDM--LTTKQRVVFAATVWSL 60
H+ F C A QVW L+ + S + +N+ V L+ R V +W L
Sbjct: 825 HILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPWIIWIL 884
Query: 61 WKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEVN 120
WK+RN +++E + V+ +V +A EW A+ + PT+ L+
Sbjct: 885 WKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAH-------ELICSKEPTKDLT------ 931
Query: 121 SSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSF 173
W P KCN+ +S G+ + + +G +L SF
Sbjct: 932 --------WIPPLMNELKCNIGIAWSKKHQMAGVSWVVRNWKGRVLLHSRCSF 976
>gb|AAC18922.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7487819|pir||T00599 probable reverse transcriptase
At2g02650 [imported] - Arabidopsis thaliana
gi|15227011|ref|NP_178368.1| reverse
transcriptase-related [Arabidopsis thaliana]
Length = 365
Score = 53.9 bits (128), Expect = 2e-06
Identities = 51/197 (25%), Positives = 77/197 (38%), Gaps = 21/197 (10%)
Query: 3 HLFFACSFAIQVWRLSGLW-SDVSAANSNDDSNIGTVFALLDMLTTKQRVVFAA--TVWS 59
H+ F C + VWR + + + S+ + N+ + L TT F +W
Sbjct: 87 HIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWR 146
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEV 119
LWK RN+ +++ + + TEW AN T + T P +S++
Sbjct: 147 LWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQ- 205
Query: 120 NSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVL---AKMTSFPC- 175
W P G KCN D+ ++ T G I + G VL AK+ S C
Sbjct: 206 ---------WNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCS 256
Query: 176 LHQVTVGEAMGLFEAFQ 192
LH EA+G A Q
Sbjct: 257 LH----AEALGFLHALQ 269
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 53.5 bits (127), Expect = 3e-06
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 18/146 (12%)
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSND-DSNIGTVFALLDMLTTK--QRVVFAATVWS 59
H F C FA WRLS + SND + NI + + T +++ +W
Sbjct: 1478 HALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWR 1537
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEV 119
+WK RN V+ E + V A+ +W A +S T +P Q+ N E
Sbjct: 1538 IWKARNNVVFNKFRESPSKTVLSAKAETHDWLNA-----TQSHKKTPSPTRQIAENKIE- 1591
Query: 120 NSSDDGLVLWQKPTSGRYKCNVDAVF 145
W+ P + KCN DA F
Sbjct: 1592 ---------WRNPPATYVKCNFDAGF 1608
>gb|AAF23283.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
gi|15232695|ref|NP_187562.1| hypothetical protein
[Arabidopsis thaliana]
Length = 484
Score = 53.5 bits (127), Expect = 3e-06
Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 18/146 (12%)
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSND-DSNIGTVFALLDMLTTK--QRVVFAATVWS 59
H F C FA WRLS + SND + NI + + T +++ +W
Sbjct: 212 HALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWR 271
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEV 119
+WK RN V+ E + V A+ +W A +S T +P Q+ N E
Sbjct: 272 IWKARNNVVFNKFRESPSKTVLSAKAETHDWLNA-----TQSHKKTPSPTRQIAENKIE- 325
Query: 120 NSSDDGLVLWQKPTSGRYKCNVDAVF 145
W+ P + KCN DA F
Sbjct: 326 ---------WRNPPATYVKCNFDAGF 342
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 52.4 bits (124), Expect = 7e-06
Identities = 44/192 (22%), Positives = 70/192 (35%), Gaps = 29/192 (15%)
Query: 3 HLFFACSFAIQVWRLS-------GLWSDVSAANSNDDSNIGTVFALLDMLTTKQRVVFAA 55
HL F C FA W +S G W++ N + ++ + +
Sbjct: 1104 HLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKS----QPEESDHHALIPW 1159
Query: 56 TVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSN 115
+W LWK+RN V++ A V+ +A + W N K P ++T
Sbjct: 1160 ILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWN--NRKEPQPQVTSSTR-------- 1209
Query: 116 SAEVNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSFPC 175
D V WQ P+ G KCN D +S + G+G + + G + + + P
Sbjct: 1210 --------DRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPS 1261
Query: 176 LHQVTVGEAMGL 187
V E L
Sbjct: 1262 QQSVLETEVEAL 1273
>gb|AAC27408.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7485464|pir||T02320 hypothetical protein
At2g34320 [imported] - Arabidopsis thaliana
gi|15226275|ref|NP_180979.1| hypothetical protein
[Arabidopsis thaliana]
Length = 292
Score = 52.0 bits (123), Expect = 9e-06
Identities = 52/192 (27%), Positives = 72/192 (37%), Gaps = 27/192 (14%)
Query: 3 HLFFACSFAIQVWRLS-------GLWSDVSAANSNDDSNIGTVFALLDMLTTKQRVVFAA 55
HL F C FA VW +S G W+D AN N+ L + +
Sbjct: 24 HLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLGKIGN----LVPW 79
Query: 56 TVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSN 115
+W LWK RN +++ A V+ RA EW +T+ E +A+
Sbjct: 80 LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEW---STRRELEGKAS---------GP 127
Query: 116 SAEVNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSFPC 175
E N S V W+ P KCN DA + R GIG + +E G + + P
Sbjct: 128 QVERNLS----VQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPR 183
Query: 176 LHQVTVGEAMGL 187
V E L
Sbjct: 184 TKNVLEAELEAL 195
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 50.4 bits (119), Expect = 3e-05
Identities = 45/194 (23%), Positives = 70/194 (35%), Gaps = 16/194 (8%)
Query: 3 HLFFACSFAIQVWRLSGL-WSDVSAANSNDDSNIGTVFA--LLDMLTTKQRVVFAATVWS 59
H+ F CS+A VWR + S+ N + NI + L ++ +W
Sbjct: 1438 HIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWR 1497
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEV 119
LWK RN +++ + V +A TEW T T + N+A+
Sbjct: 1498 LWKSRNEYLFQQLDRFPWKVAQKAEQEATEW------------VETMVNDTAISHNTAQS 1545
Query: 120 NSSD-DGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSFPCLHQ 178
N W P G KCN D+ + + T G + D G + + +
Sbjct: 1546 NDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYS 1605
Query: 179 VTVGEAMGLFEAFQ 192
EA+G A Q
Sbjct: 1606 ALQAEALGFLHALQ 1619
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 50.4 bits (119), Expect = 3e-05
Identities = 39/146 (26%), Positives = 57/146 (38%), Gaps = 18/146 (12%)
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSND-DSNIGTVFALLDMLTTKQ--RVVFAATVWS 59
H F C FA W LS + SND + NI + + T +++ +W
Sbjct: 1252 HALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWR 1311
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAESRAATTAPPTQLLSNSAEV 119
+WK RN V+ E + V A+ +W A +S T +P Q+ N E
Sbjct: 1312 IWKARNNVVFNKFRESPSKTVLSAKAETHDWLNA-----TQSHKKTPSPTRQIAENKIE- 1365
Query: 120 NSSDDGLVLWQKPTSGRYKCNVDAVF 145
W+ P + KCN DA F
Sbjct: 1366 ---------WRNPPATYVKCNFDAGF 1382
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 816
Score = 48.5 bits (114), Expect = 1e-04
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 6/152 (3%)
Query: 41 LLDMLTTKQRVVFAATVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQIANTKTPAE 100
LLD L + + +W W RN V + T + + + + K +
Sbjct: 406 LLDTLDMRNKAQMLLMLWRAWHLRNNSVHDTGTLTISGSIRFLQSYVQLLFPIRQKEDPK 465
Query: 101 SRAATTAPPTQLLSNSAEVNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRTGIGICIHD 160
+ A P L+ + V +D L +W+ P G K NVD FS N GIG+ D
Sbjct: 466 GKCAAQVPGR--LNQNPGVTKADC-LQIWEPPPEGWAKINVDGAFSMTDNTGGIGVIARD 522
Query: 161 EEGAFVLAKMTSFPCLHQVTVGEAMGLFEAFQ 192
EG A ++S+ LH+ E + + ++
Sbjct: 523 SEGK---ALLSSWKYLHRCADAEQVEILACYE 551
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.130 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,738,363
Number of Sequences: 2540612
Number of extensions: 11416299
Number of successful extensions: 29110
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 28974
Number of HSP's gapped (non-prelim): 123
length of query: 192
length of database: 863,360,394
effective HSP length: 121
effective length of query: 71
effective length of database: 555,946,342
effective search space: 39472190282
effective search space used: 39472190282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)
Medicago: description of AC148484.2