BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148405.1 + phase: 0
(149 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42392.1| unknown protein [Arabidopsis thaliana] 144 6e-34
gb|AAM63670.1| unknown [Arabidopsis thaliana] 119 2e-26
dbj|BAC42849.1| unknown protein [Arabidopsis thaliana] gi|289732... 118 3e-26
gb|AAV31164.1| At1g80060 [Arabidopsis thaliana] gi|15220048|ref|... 93 1e-18
ref|XP_506738.1| PREDICTED OJ1145_F01.17 gene product [Oryza sat... 80 1e-14
emb|CAB79945.1| hypothetical protein [Arabidopsis thaliana] gi|2... 70 1e-11
gb|AAH60402.1| MGC68520 protein [Xenopus laevis] 61 5e-09
gb|AAK61211.1| Minus -99 protein [Homo sapiens] gi|14327922|gb|A... 60 1e-08
emb|CAI95606.1| chromosome 16 open reading frame 33 [Homo sapiens] 60 1e-08
dbj|BAB15505.1| unnamed protein product [Homo sapiens] 60 1e-08
ref|NP_001016702.1| hypothetical protein LOC549456 [Xenopus trop... 60 1e-08
gi|48427640 TPA: U11/U12 snRNP 25K [Homo sapiens] 60 1e-08
pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gen... 60 1e-08
ref|XP_213260.2| PREDICTED: similar to U11/U12 snRNP 25K protein... 59 2e-08
gb|AAH28766.1| RIKEN cDNA 3300001G02 [Mus musculus] gi|16973675|... 59 2e-08
ref|NP_084369.1| RIKEN cDNA 3300001G02 [Mus musculus] gi|1285966... 59 2e-08
ref|XP_591219.1| PREDICTED: similar to U11/U12 snRNP 25K protein... 58 4e-08
ref|XP_474233.1| OSJNBa0084K01.17 [Oryza sativa (japonica cultiv... 58 5e-08
emb|CAG12211.1| unnamed protein product [Tetraodon nigroviridis] 57 7e-08
gb|AAL73047.1| C16ORF33 [Sphoeroides nephelus] 57 9e-08
>dbj|BAC42392.1| unknown protein [Arabidopsis thaliana]
Length = 239
Score = 144 bits (362), Expect = 6e-34
Identities = 73/134 (54%), Positives = 94/134 (69%), Gaps = 9/134 (6%)
Query: 12 PRRSLSIQLSSMIIVDC-----TLPYDKLPSQNLTLTVLKLDSSSFQVEVAKTATVAVLK 66
PRRSL+ LS + ++D + Y+++P + + LTVLKLD SSF ++V KTATV LK
Sbjct: 5 PRRSLAASLSPLRLIDGLPRRRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELK 64
Query: 67 QAVEAAFRHKP----EKISWPLVWGQFCLCYEGQKLVTETDYLRDYGIKDGDQLRFIRHV 122
AVEAAF H P KISWP VWGQFCL YE ++L+ E++YL ++GIKDGDQLRFIRH+
Sbjct: 65 MAVEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHI 124
Query: 123 SNVCNFQRKPKKRT 136
SN C K K +T
Sbjct: 125 SNYCMLMVKHKSKT 138
>gb|AAM63670.1| unknown [Arabidopsis thaliana]
Length = 208
Score = 119 bits (297), Expect = 2e-26
Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 8/117 (6%)
Query: 29 TLPYDKLPSQNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK----ISWPL 84
T YDKLP++ + L+VLKLD SSF V V +ATV LK A+E AF H P+K ISW
Sbjct: 8 TFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSH 67
Query: 85 VWGQFCLCYEGQKLVTETDYLRDYGIKDGDQLRFIRHVSNVC----NFQRKPKKRTV 137
VWG FCLC+ GQKL+T+TD + +YG+KDGD++RF HVS + RK K++ +
Sbjct: 68 VWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAELSKGYSRKSKRKNL 124
>dbj|BAC42849.1| unknown protein [Arabidopsis thaliana] gi|28973251|gb|AAO63950.1|
unknown protein [Arabidopsis thaliana]
gi|15239396|ref|NP_197916.1| expressed protein
[Arabidopsis thaliana]
Length = 208
Score = 118 bits (296), Expect = 3e-26
Identities = 60/117 (51%), Positives = 79/117 (67%), Gaps = 8/117 (6%)
Query: 29 TLPYDKLPSQNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK----ISWPL 84
T YDKLP++ + L+VLKLD SSF V V +ATV LK A+E AF H P+K ISW
Sbjct: 8 TFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSH 67
Query: 85 VWGQFCLCYEGQKLVTETDYLRDYGIKDGDQLRFIRHVSNVC----NFQRKPKKRTV 137
VWG FCLC+ GQKL+T+TD + +YG+KDGD++RF HVS + RK K++ +
Sbjct: 68 VWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQKNL 124
>gb|AAV31164.1| At1g80060 [Arabidopsis thaliana] gi|15220048|ref|NP_178123.1|
expressed protein [Arabidopsis thaliana]
gi|58331795|gb|AAW70395.1| At1g80060 [Arabidopsis
thaliana]
Length = 243
Score = 93.2 bits (230), Expect = 1e-18
Identities = 50/97 (51%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 32 YDKLPSQN-LTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK----ISWPLVW 86
Y KLP Q + L+V+KL+ S F VEVAK +VA LK+AVE F P + ISW VW
Sbjct: 44 YLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISWSHVW 103
Query: 87 GQFCLCYEGQKLVTETDYLRDYGIKDGDQLRFIRHVS 123
G FCLCY Q+LV + +R G+ DGDQL F+RH+S
Sbjct: 104 GHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHLS 140
>ref|XP_506738.1| PREDICTED OJ1145_F01.17 gene product [Oryza sativa (japonica
cultivar-group)] gi|50905811|ref|XP_464394.1| unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|46389904|dbj|BAD15525.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 324
Score = 80.1 bits (196), Expect = 1e-14
Identities = 42/98 (42%), Positives = 61/98 (61%), Gaps = 6/98 (6%)
Query: 32 YDKLPS-QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK-----ISWPLV 85
Y +LP + L LTV KLD S F V++A++A V LK A+E F ++ ISW V
Sbjct: 105 YRRLPEPRRLRLTVRKLDDSYFDVQIARSAAVWELKAAIEDVFAALYDETDNKAISWQHV 164
Query: 86 WGQFCLCYEGQKLVTETDYLRDYGIKDGDQLRFIRHVS 123
W FCLC++ +KL + LR +GI+DGD++ F +H+S
Sbjct: 165 WSHFCLCFKDEKLTDDKATLRAFGIRDGDEVHFAQHLS 202
>emb|CAB79945.1| hypothetical protein [Arabidopsis thaliana]
gi|2864616|emb|CAA16963.1| hypothetical protein
[Arabidopsis thaliana] gi|15236724|ref|NP_194954.1|
UDP-sugar transporter-related [Arabidopsis thaliana]
gi|7485359|pir||T05401 hypothetical protein F10M6.90 -
Arabidopsis thaliana
Length = 364
Score = 69.7 bits (169), Expect = 1e-11
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 9/80 (11%)
Query: 12 PRRSLSIQLSSMIIVDC-----TLPYDKLPSQNLTLTVLKLDSSSFQVEVAKTATVAVLK 66
PRRSL+ LS + ++D + Y+++P + + LTVLKLD SSF ++V KTATV LK
Sbjct: 195 PRRSLAASLSPLRLIDGLPRRRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELK 254
Query: 67 QAVEAAFRH----KPEKISW 82
AVEAAF H P KISW
Sbjct: 255 MAVEAAFSHLPISGPGKISW 274
>gb|AAH60402.1| MGC68520 protein [Xenopus laevis]
Length = 168
Score = 61.2 bits (147), Expect = 5e-09
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K D V V + ATV LK+A++ + K ++ ISW VW + L
Sbjct: 75 QAMTVRVCKEDEEIMPVVVVQNATVLDLKRAIQRYIQLKHQREGGIQHISWKYVWRTYHL 134
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIRHVSN 124
Y G+KL E LR+YGIK+ D++ F++ + N
Sbjct: 135 SYSGEKLDDEAKSLREYGIKNRDEVVFVKKLKN 167
>gb|AAK61211.1| Minus -99 protein [Homo sapiens] gi|14327922|gb|AAH09179.1|
C16orf33 protein [Homo sapiens]
gi|12655063|gb|AAH01381.1| U11/U12 snRNP 25K protein
[Homo sapiens] gi|13443018|ref|NP_078847.1| U11/U12
snRNP 25K protein [Homo sapiens]
Length = 132
Score = 59.7 bits (143), Expect = 1e-08
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K+D V V ++ATV LK+A++ + K E+ ISW VW + L
Sbjct: 39 QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHL 98
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
G+KL + LRDYGI++ D++ FI+
Sbjct: 99 TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 127
>emb|CAI95606.1| chromosome 16 open reading frame 33 [Homo sapiens]
Length = 267
Score = 59.7 bits (143), Expect = 1e-08
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K+D V V ++ATV LK+A++ + K E+ ISW VW + L
Sbjct: 174 QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHL 233
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
G+KL + LRDYGI++ D++ FI+
Sbjct: 234 TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 262
>dbj|BAB15505.1| unnamed protein product [Homo sapiens]
Length = 132
Score = 59.7 bits (143), Expect = 1e-08
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K+D V V ++ATV LK+A++ + K E+ ISW VW + L
Sbjct: 39 QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHL 98
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
G+KL + LRDYGI++ D++ FI+
Sbjct: 99 TSAGEKLAEDRKKLRDYGIRNRDEVSFIK 127
>ref|NP_001016702.1| hypothetical protein LOC549456 [Xenopus tropicalis]
gi|60550970|gb|AAH91616.1| Hypothetical protein
LOC549456 [Xenopus tropicalis]
Length = 167
Score = 59.7 bits (143), Expect = 1e-08
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K D V V + ATV LK+A++ + K ++ ISW VW + L
Sbjct: 74 QAMTVRVCKADGEIMPVVVVQNATVLDLKRAIQRYIQLKHQREGGIQHISWKYVWRTYHL 133
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIRHVSN 124
+ G+KL ++ LR+YGIK+ D++ F++ + N
Sbjct: 134 SFSGEKLEEDSRSLREYGIKNRDEVVFVKKLKN 166
>gi|48427640 TPA: U11/U12 snRNP 25K [Homo sapiens]
Length = 123
Score = 59.7 bits (143), Expect = 1e-08
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K+D V V ++ATV LK+A++ + K E+ ISW VW + L
Sbjct: 30 QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHL 89
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
G+KL + LRDYGI++ D++ FI+
Sbjct: 90 TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118
>pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
3300001g02) Product Homologous To Ubiquitin Fold
Length = 105
Score = 59.7 bits (143), Expect = 1e-08
Identities = 33/90 (36%), Positives = 50/90 (54%), Gaps = 6/90 (6%)
Query: 37 SQNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFC 90
S +T+ V K+D V V + ATV LK+A++ + K E+ ISW VW +
Sbjct: 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYH 64
Query: 91 LCYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
L G+KL + LRDYGI++ D++ FI+
Sbjct: 65 LTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 94
>ref|XP_213260.2| PREDICTED: similar to U11/U12 snRNP 25K protein [Rattus norvegicus]
Length = 182
Score = 59.3 bits (142), Expect = 2e-08
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K+D V V + ATV LK+A++ + K E+ ISW VW + L
Sbjct: 89 QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 148
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
G+KL + LRDYGI++ D++ FI+
Sbjct: 149 TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 177
>gb|AAH28766.1| RIKEN cDNA 3300001G02 [Mus musculus] gi|16973675|gb|AAL32366.1|
C16ORF33 [Mus musculus]
Length = 123
Score = 59.3 bits (142), Expect = 2e-08
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K+D V V + ATV LK+A++ + K E+ ISW VW + L
Sbjct: 30 QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 89
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
G+KL + LRDYGI++ D++ FI+
Sbjct: 90 TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118
>ref|NP_084369.1| RIKEN cDNA 3300001G02 [Mus musculus] gi|12859665|dbj|BAB31728.1|
unnamed protein product [Mus musculus]
Length = 123
Score = 59.3 bits (142), Expect = 2e-08
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K+D V V + ATV LK+A++ + K E+ ISW VW + L
Sbjct: 30 QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 89
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
G+KL + LRDYGI++ D++ FI+
Sbjct: 90 TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118
>ref|XP_591219.1| PREDICTED: similar to U11/U12 snRNP 25K protein, partial [Bos
taurus]
Length = 316
Score = 58.2 bits (139), Expect = 4e-08
Identities = 32/89 (35%), Positives = 50/89 (55%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ V K+D V V + ATV LK+A++ + + E+ ISW VW + L
Sbjct: 223 QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHL 282
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
G+KL + LRDYGI++ D++ FI+
Sbjct: 283 TSAGEKLTEDRKKLRDYGIRNRDEVSFIK 311
>ref|XP_474233.1| OSJNBa0084K01.17 [Oryza sativa (japonica cultivar-group)]
gi|38346077|emb|CAE04845.2| OSJNBa0084K01.17 [Oryza
sativa (japonica cultivar-group)]
Length = 187
Score = 57.8 bits (138), Expect = 5e-08
Identities = 35/110 (31%), Positives = 55/110 (49%), Gaps = 8/110 (7%)
Query: 40 LTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCLCY 93
+ LTV+KLD +SF V + TATV LK A+ ++ ISW +W +CL +
Sbjct: 75 MRLTVVKLDGTSFDVAMLNTATVKDLKMAIRKKTDEIEQEKMGHRHISWKHIWDNYCLTH 134
Query: 94 EGQKLVTETDYLRDYGIKDGDQLRFIRHVSNVCNFQRKPKKRTVNLKQHG 143
+ +KL+ + L GI + ++ F HV + RK +R + HG
Sbjct: 135 QNEKLIDDNSVLSSNGICNNSKVYFSPHV--MSRVYRKHSRRRKHRFFHG 182
>emb|CAG12211.1| unnamed protein product [Tetraodon nigroviridis]
Length = 188
Score = 57.4 bits (137), Expect = 7e-08
Identities = 30/89 (33%), Positives = 50/89 (55%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ VLK D + V + ATV LK+A+ K ++ +SW VW + L
Sbjct: 95 QAMTVRVLKADGEVMPIVVVQNATVLDLKKAIRRFMELKQQREGGVKYVSWRYVWRTYHL 154
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
++G+KL + L+DYGIK+ D++ F++
Sbjct: 155 VFQGEKLEDDRMRLKDYGIKNRDEVTFMK 183
>gb|AAL73047.1| C16ORF33 [Sphoeroides nephelus]
Length = 109
Score = 57.0 bits (136), Expect = 9e-08
Identities = 30/89 (33%), Positives = 50/89 (55%), Gaps = 6/89 (6%)
Query: 38 QNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEK------ISWPLVWGQFCL 91
Q +T+ VLK D + V + ATV LK+A+ K ++ +SW VW + L
Sbjct: 16 QAMTVRVLKADGEVMPIVVVQNATVLDLKKAIRRFMELKQQREGGVKYVSWRYVWRTYHL 75
Query: 92 CYEGQKLVTETDYLRDYGIKDGDQLRFIR 120
++G+KL + L+DYGIK+ D++ F++
Sbjct: 76 VFQGEKLEGDRMRLKDYGIKNRDEVTFMK 104
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,693,329
Number of Sequences: 2540612
Number of extensions: 7708353
Number of successful extensions: 22789
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 22745
Number of HSP's gapped (non-prelim): 46
length of query: 149
length of database: 863,360,394
effective HSP length: 125
effective length of query: 24
effective length of database: 545,783,894
effective search space: 13098813456
effective search space used: 13098813456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC148405.1