BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148395.6 - phase: 0
(1336 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 682 0.0
emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis th... 678 0.0
emb|CAB81200.1| putative retrotransposon polyprotein [Arabidopsi... 665 0.0
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 568 e-160
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 556 e-156
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 552 e-155
gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|2... 550 e-155
emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|30212... 547 e-153
ref|NP_194047.2| protein kinase family protein [Arabidopsis thal... 547 e-153
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 538 e-151
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 536 e-150
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar... 531 e-149
dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana] 530 e-148
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 530 e-148
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 528 e-148
gb|AAL68641.1| polyprotein [Oryza sativa (japonica cultivar-group)] 528 e-148
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 527 e-147
gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|A... 527 e-147
ref|XP_470422.1| putative polyprotein [Oryza sativa (japonica cu... 514 e-143
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 513 e-143
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 682 bits (1759), Expect = 0.0
Identities = 384/966 (39%), Positives = 559/966 (57%), Gaps = 63/966 (6%)
Query: 398 ASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNL 457
AS H+ +++ + PV I L +GN +A GTV LI ++V YV E + +L
Sbjct: 169 ASHHMTGNLELLSDMRSMSPVLIILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESDL 228
Query: 458 LSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVI 517
+SV ++ +N+C+V + IQD++ +TG+G+ G + F
Sbjct: 229 ISVGQMMDENHCVVQLADHFLVIQDRTTRMVTGIGKRENGSFC----------FRGMENA 278
Query: 518 ALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRM--QQHFPCIKVDSNSVCDICHYSRHKK 575
A +S F LWH RLGH S D+++ + ++ K +VCD C ++ +
Sbjct: 279 AAVHTSVKAPF----DLWHRRLGHAS-DKIVNLLPRELLSSGKEILENVCDTCMRAKQTR 333
Query: 576 LPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSK 635
F LS N++ ++LIH D+WGP T S G +YF+T +DDYSR W+ L KSE K
Sbjct: 334 DTFPLSDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQK 393
Query: 636 SVQNFILNIENQFNCKVKTVRTDNGPEFL-MPDFYSSKGIEHQTSCVETPQQNGRVLPYS 694
+++FI +E QF+ ++KTVR+DNG EFL M +++ KGI H+TSCV TP QNGRV
Sbjct: 394 HLKDFIALVERQFDTEIKTVRSDNGTEFLCMREYFLHKGITHETSCVGTPHQNGRV---- 449
Query: 695 NSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSET--------NKEPAMHIDNNTHIQ 746
+ I+ S LP++ E N+ P+M + + +
Sbjct: 450 ---------ERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYE 500
Query: 747 DPTQIEHEPQQLNTRKSTRVSQKPNHLSD-YVCNSSS----------------DSTKQ-- 787
+ L S + NH D +V S D +Q
Sbjct: 501 MLYKTAPNYSHLRVFGSLCYAHNQNHKGDKFVARSRRCVFVGYPHGQKGWRLFDLEEQKF 560
Query: 788 -ASSGILYPIKHYH----SLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMNSEL 842
S +++ + S N ++SH+ F A+T EP +Y EA W +AM++E+
Sbjct: 561 FVSRDVIFQETEFPYSKMSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEI 620
Query: 843 SALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDT 902
+L N+T+ V+ PP + +G+KWVYKIK++SDG IERYKARLV G Q EG+D+ +T
Sbjct: 621 ESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDET 680
Query: 903 FSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCK 962
F+PVAK++TVR+ + +A+ WH+HQ+DV+NAFLHGDL E VYM +PQG P++VC+
Sbjct: 681 FAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCR 740
Query: 963 LLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAG 1022
L KSLYGLKQA R W+ KL+ L G+ QS SD+SLF ++D F +LVYVDD+I++G
Sbjct: 741 LHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISG 800
Query: 1023 NSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGA 1082
+ + + K+ L+ F +KDLG LKYFLGIEV+ + G + QRKY LD++ + GLLGA
Sbjct: 801 SCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGA 860
Query: 1083 KPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTI 1142
+P PL+ + KL SP D YRRLVG+L+YL TRP++++ V L+QF+ P
Sbjct: 861 RPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQ 920
Query: 1143 THYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSL 1202
H++ A RVV+YLK PGQG+L S LQ+ G+ D+D+A CP +RRS +GY LG +
Sbjct: 921 DHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTP 980
Query: 1203 ISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHI 1262
ISW+ KKQ TV+RSS+EAEYRA++F + EL WL +L DL V + +F D++SAI +
Sbjct: 981 ISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIAL 1040
Query: 1263 AGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKL 1322
+ NPV HERTKH+E+DCHF+R+ + I + S QLAD TK L K FL KL
Sbjct: 1041 SVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKL 1100
Query: 1323 NMIDLY 1328
++D++
Sbjct: 1101 GILDVH 1106
Score = 98.2 bits (243), Expect = 2e-18
Identities = 42/152 (27%), Positives = 85/152 (55%)
Query: 30 YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
Y + A+D +V P+L +NY WA + AL ++ KF F+DG+IP P D P+ + W
Sbjct: 21 YDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDW 80
Query: 90 NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
N L+ SW+ +++ + +I + A D+W ++++RF + + +++ ++ + KQ
Sbjct: 81 LTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFFVSNGPKNQKMKADLATCKQ 140
Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPH 181
+ ++ ++ L +W+ + +Y P +CA H
Sbjct: 141 EGMTMEGYYGKLNKIWDNINSYRPLRICASHH 172
>emb|CAB79159.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|2961349|emb|CAA18107.1| LTR retrotransposon like
protein [Arabidopsis thaliana] gi|11358464|pir||T49111
hypothetical retrovirus-related pol polyprotein AT4g22040
- Arabidopsis thaliana
Length = 1109
Score = 678 bits (1750), Expect = 0.0
Identities = 380/966 (39%), Positives = 557/966 (57%), Gaps = 63/966 (6%)
Query: 398 ASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNL 457
AS H+ +++ + PV I L +GN +A GTV LI ++V YV E + +L
Sbjct: 169 ASHHMTGNLELLSGMRSMSPVLIILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESDL 228
Query: 458 LSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVI 517
+SV ++ +N+C+V + IQD++ +TG+G+ G + F
Sbjct: 229 ISVGQMMDENHCVVQLADHFLVIQDRTTRMVTGIGKRENGSFC----------FRGMENA 278
Query: 518 ALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRM--QQHFPCIKVDSNSVCDICHYSRHKK 575
A +S F LWH RLGH S D+++ + ++ K +VCD C ++ +
Sbjct: 279 AAVHTSVKAPF----DLWHRRLGHAS-DKIVNLLPRELLSSGKEILENVCDTCMRAKQTR 333
Query: 576 LPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSK 635
F L N++ ++LIH D+WGP T S G +YF+T +DDYSR W+ L KSE K
Sbjct: 334 DTFPLRDNRSMDSFQLIHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQK 393
Query: 636 SVQNFILNIENQFNCKVKTVRTDNGPEFL-MPDFYSSKGIEHQTSCVETPQQNGRVLPYS 694
+++F+ +E QF+ ++KTVR+DNG EFL M +++ KGI H+TSCV TP QNGRV
Sbjct: 394 HLKDFMALVERQFDTEIKTVRSDNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRV---- 449
Query: 695 NSNQYFQWQYHSNHPIIPATEQTSSNSELPLENQSET--------NKEPAMHIDNNTHIQ 746
+ I+ S LP++ E N+ P+M + + +
Sbjct: 450 ---------ERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSMLLQGKSPYE 500
Query: 747 DPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSS-----------------DSTKQ-- 787
+ + L S + NH D S D +Q
Sbjct: 501 MLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWRLFDLEEQKF 560
Query: 788 -ASSGILYPIKHYH----SLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMNSEL 842
S +++ + S N ++SH+ F A+T EP +Y EA W +AM++E+
Sbjct: 561 FVSRDVIFQETEFPYSKMSCNRFTSSHKAFLAAVTAGMEPTTYNEAMVDKAWREAMSAEI 620
Query: 843 SALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDT 902
+L N+T+ V+ PP + +G+KWVYKIK++SDG IERYKARLV G Q EG+D+ +T
Sbjct: 621 ESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKEGVDYDET 680
Query: 903 FSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCK 962
F+PVAK++TVR+ + +A+ WH+HQ+DV+NAFLHGDL E VYM +PQG P++VC+
Sbjct: 681 FAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCR 740
Query: 963 LLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAG 1022
L KSLYGLKQA R W+ KL+ L G+ QS SD+SLF ++D F +LVYVDD+I++G
Sbjct: 741 LHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLIISG 800
Query: 1023 NSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGA 1082
+ + + K+ L+ F +KDLG LKYFLGIEV+ + G + QRKY LD++ + GLLGA
Sbjct: 801 SCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQRKYVLDIISEMGLLGA 860
Query: 1083 KPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTI 1142
+P PL+ + KL SP D YRRLVG+L+YL TRP++++ V L+QF+ P
Sbjct: 861 RPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQ 920
Query: 1143 THYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSL 1202
H++ A RVV+YLK PGQG+L S LQ+ G+ D+D+A CP +RRS +GY LG +
Sbjct: 921 DHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPLTRRSLTGYFVQLGDTP 980
Query: 1203 ISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHI 1262
ISW+ KKQ T++RSS+EAEYRA++F + EL WL +L DL V + +F D++SAI +
Sbjct: 981 ISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHVQAMRIFSDSKSAIAL 1040
Query: 1263 AGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKL 1322
+ NPV HERTKH+E+DCHF+R+ + I + S QLAD TK L K FL KL
Sbjct: 1041 SVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADILTKALGEKEVRYFLRKL 1100
Query: 1323 NMIDLY 1328
++D++
Sbjct: 1101 GILDVH 1106
Score = 101 bits (252), Expect = 1e-19
Identities = 44/152 (28%), Positives = 86/152 (55%)
Query: 30 YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
Y + A+D +V P+L +NY WA + AL ++ KF F+DG+IP P D P+ + W
Sbjct: 21 YDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDW 80
Query: 90 NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
N L+ SW+ +++ + +I + A D+W ++++RFS + + +++ ++ + KQ
Sbjct: 81 LTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATCKQ 140
Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPH 181
+ +V ++ L +W+ + +Y P +CA H
Sbjct: 141 EGMTVEGYYGKLNKIWDNINSYRPLRICASHH 172
>emb|CAB81200.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
gi|4539373|emb|CAB40067.1| putative retrotransposon
polyprotein [Arabidopsis thaliana] gi|7486142|pir||T04294
hypothetical protein F25I24.200 - Arabidopsis thaliana
Length = 1203
Score = 665 bits (1715), Expect = 0.0
Identities = 392/1031 (38%), Positives = 555/1031 (53%), Gaps = 138/1031 (13%)
Query: 354 LQSQQASSSKV-----NLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKF 408
L +Q ++S + +L + N++T S N S WI+DSGAS H+CS +
Sbjct: 56 LMAQTSTSGTIPFPSTSLKYENNNLTFQNHTLSSLQNVLSSDAWIIDSGASSHVCSDLTM 115
Query: 409 FDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNN 468
F + V + LPNG +GT+ + LI NVL V +FK NL+SV L +
Sbjct: 116 FRELIHVSGVTVTLPNGTRVAITHTGTICITSTLILHNVLLVPDFKFNLISVCCLVKTLS 175
Query: 469 CIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTF 528
F D C+IQ+ + M G G+ LY L FS +L +SS T
Sbjct: 176 YSAHFFADCCYIQELTRGLMIGRGKTYNNLYILETQRTSFSP-------SLPAASSFTGT 228
Query: 529 LPQEAL-WHFRLGHLSNDRLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASH 587
+ + L WH RLG I HY ++ L
Sbjct: 229 VQDDCLLWHQRLG--------------------------IRHYLHYRNL----------- 251
Query: 588 CYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQ 647
YF+T +DD +R TW+ + K KSEVS F+ I Q
Sbjct: 252 ----------------------YFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQ 289
Query: 648 FNCKVKTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRVLPYSNSNQYFQWQYHSN 707
+N K+K +R+DN E F +G+ HQ SC TPQQN V Y + + ++ +
Sbjct: 290 YNAKIKAIRSDNVKELAFTKFVKEQGMIHQFSCAYTPQQNSVVERYPSGYKGYKVLDLES 349
Query: 708 HPI--------------------IPATEQTSSNSELPL--------------------EN 727
H I + + NS LPL N
Sbjct: 350 HSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFVESMPLDDDLRADDNN 409
Query: 728 QSETNKEPAMH----IDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNS--- 780
S +N + + + + Q+ ++ + + + R ++ P +LS+Y CNS
Sbjct: 410 ASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKRNAKAPAYLSEYHCNSVPF 469
Query: 781 -------SSDSTKQASSGIL-------YPIKHYHSLNNISASHQKFALAITDASEPISYK 826
+S S + SS I YP+ S + ++ + A +EP ++
Sbjct: 470 LSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTPLFHSYICAYNVETEPKAFT 529
Query: 827 EASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARL 886
+A + + W +A N EL AL NKTWI +G KWV+ IK+ DG+IERYKARL
Sbjct: 530 QAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTIKYNPDGSIERYKARL 589
Query: 887 VAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYM 946
VA+G+TQ EGID+ +TFSPVAK +V++L+ LA+ W L Q+DV+NAFLHG+L E +YM
Sbjct: 590 VAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGELDEEIYM 649
Query: 947 SVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFI 1001
S+PQG P VC+LLKSLYGLKQASR+WY++L+ L + QS +D+++F+
Sbjct: 650 SLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMFV 709
Query: 1002 LHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLG 1061
S T +LVYVDD+++A N + ++ +K +L EFKIKDLG ++FLG+E+A S G
Sbjct: 710 KVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEG 769
Query: 1062 ISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTT 1121
IS+CQRKY +LL+D GL G KP + P+DP++ L ++ + SYR LVG+LLYL
Sbjct: 770 ISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCI 829
Query: 1122 TRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADW 1181
TRPDI F V LSQFL+APT H A +V++YLKG PGQGL++ S+L L GF+DADW
Sbjct: 830 TRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDADW 889
Query: 1182 AGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKD 1241
C DSRRS +G+C +LG+SLI+W++KKQ V+RSS+E+EYR+L+ A+CE+ WL LLKD
Sbjct: 890 GTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKD 949
Query: 1242 LRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQ 1301
L V LFCDN+SA+H+A NPVFHERTKH+EIDCH VR++++ K L + + +Q
Sbjct: 950 LHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGNQ 1009
Query: 1302 LADFFTKPLPP 1312
LAD TKPL P
Sbjct: 1010 LADILTKPLHP 1020
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 568 bits (1464), Expect = e-160
Identities = 289/632 (45%), Positives = 407/632 (63%), Gaps = 18/632 (2%)
Query: 703 QYHSNHPIIPATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRK 762
Q+H + P + S S L L + ++ P+QI P Q++
Sbjct: 833 QFHEE--VFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQIS--- 887
Query: 763 STRVSQKPNHLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEP 822
S RV + P HL+DY CN+ K YPI S + IS SH + IT P
Sbjct: 888 SQRVRKPPAHLNDYHCNTMQSDHK-------YPISSTISYSKISPSHMCYINNITKIPIP 940
Query: 823 ISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERY 882
+Y EA W +A+++E+ A+ TW P K +G KWV+ +K +DG +ERY
Sbjct: 941 TNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERY 1000
Query: 883 KARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSE 942
KARLVAKGYTQ EG+D+ DTFSPVAK+TT+++L+ +++ W L QLDV+NAFL+G+L E
Sbjct: 1001 KARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEE 1060
Query: 943 NVYMSVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDH 997
++M +P+G K N V +L +S+YGLKQASR+W++K + LL G+K++ DH
Sbjct: 1061 EIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDH 1120
Query: 998 SLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAH 1057
+LF+ D F +LVYVDD+++A S ++ LD FK++DLG LKYFLG+EVA
Sbjct: 1121 TLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVAR 1180
Query: 1058 SKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLL 1117
+ GISICQRKY L+LL+ TG+L KPV+ P+ P++K+ +D+ +DI YRR+VGKL+
Sbjct: 1181 TTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLM 1240
Query: 1118 YLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFT 1177
YLT TRPDI F V +L QF +AP TH A RV++Y+KGT GQGL + S L L GF
Sbjct: 1241 YLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFA 1300
Query: 1178 DADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLY 1237
D+DWA C DSRRST+ + F+G SLISWR+KKQHTV+RSS+EAEYRAL+ A+CE+ WL
Sbjct: 1301 DSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFT 1360
Query: 1238 LLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIK 1297
LL L+ +P+L+ D+ +AI+IA NPVFHERTKH+++DCH VRE+L KLL ++
Sbjct: 1361 LLVSLQAS-PPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVR 1419
Query: 1298 SQSQLADFFTKPLPPKNFHSFLPKLNMIDLYN 1329
++ Q+AD TKPL P F K++++++++
Sbjct: 1420 TEDQVADILTKPLFPYQFEHLKSKMSILNIFS 1451
Score = 378 bits (970), Expect = e-103
Identities = 226/691 (32%), Positives = 354/691 (50%), Gaps = 52/691 (7%)
Query: 21 DPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPT 80
DP+Q P +++H++D P I+ L +NY W+ +M +L AKNK F+DG++ P
Sbjct: 56 DPTQSP---FFLHSADHPGLNIISHRLDETNYGDWSVAMLISLDAKNKTGFIDGTLSRPL 112
Query: 81 DFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISEL 140
+ D NF+ W+RCN +V SW++NSV I +SI+ + +A D+W +L RF+ + R L
Sbjct: 113 ESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVTNLPRTYNL 172
Query: 141 QCEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITR 200
EI +Q + S++E++T LK LW++L++ A C C M + + E +
Sbjct: 173 TQEIQDFRQGTLSLSEYYTRLKTLWDQLDS-----TEALDEPCTC-GKAMRLQQKAEQAK 226
Query: 201 SIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKIS-IPVEDSTILVNSAG 259
++FL GLN+S+ +VR QI+ LP++ +++ ++ Q Q S + + V+
Sbjct: 227 IVKFLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQQSFSNVVAPPAAFQVSEIT 286
Query: 260 KSQGRGRGN---GNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIE 316
+S N + G+ CSF R GH + CY+KHGFPP + K A E
Sbjct: 287 QSPSMDPTVCYVQNGPNKGRPICSFYNRVGHIAERCYKKHGFPPGFTPKGKAG------E 340
Query: 317 QNEEREDL--DDSKSCKGNSNTEPSFG-ITKEQYEQLVTLLQSQ-----------QASSS 362
+ ++ + L + ++S + N++ E G ++KEQ +Q + + SQ ++S
Sbjct: 341 KLQKPKPLAANVAESSEVNTSLESMVGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQ 400
Query: 363 KVNLSHVTNHVTSGITRTSYTMNHS-SFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIK 421
NL + T H+ S TW++DSGA+ H+ F S + +
Sbjct: 401 SDNLGICFSPSTYSFIGILTVARHTLSSATWVIDSGATHHVSHDRSLFSSLDTSVLSAVN 460
Query: 422 LPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQ 481
LP G GT+ + ++ +NVL++ EF+LNL+S+ L D V FD + C IQ
Sbjct: 461 LPTGPTVKISGVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQ 520
Query: 482 DKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGH 541
D +M G G + LY L++G Q S S + ++WH RLGH
Sbjct: 521 DLIKGRMLGQGRRVANLYLLDVGDQ----------------SISVNAVVDISMWHRRLGH 564
Query: 542 LSNDRLLRMQQHFPCI--KVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGP 599
S RL + K + C +CH ++ +KL F S ++L+H D+WGP
Sbjct: 565 ASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGP 624
Query: 600 ISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDN 659
S ++ G+KYF+T +DD+SR TW+ L KTKSEV FI +ENQ+ KVK VR+DN
Sbjct: 625 FSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDN 684
Query: 660 GPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
PE FY+ KGI SC ETP+QN V
Sbjct: 685 APELKFTSFYAEKGIVSFHSCPETPEQNSVV 715
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 556 bits (1433), Expect = e-156
Identities = 280/591 (47%), Positives = 399/591 (67%), Gaps = 19/591 (3%)
Query: 724 PLENQSETNKEPAMHID-NNTHIQDPTQIEHEPQQLNT---RKSTRVSQKPNHLSDYVCN 779
P EN+ + P +++D N++H P ++ E N ++++RVS+ P +L DY CN
Sbjct: 821 PAENEESSVFFPHIYVDRNDSHPSQPLPVQ-ETSASNVPAEKQNSRVSRPPAYLKDYHCN 879
Query: 780 SSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMN 839
S + ST +PI S +++S + F A+ EP +Y +A Q W AM
Sbjct: 880 SVTSSTD-------HPISEVLSYSSLSDPYMIFINAVNKIPEPHTYAQARQIKEWCDAMG 932
Query: 840 SELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDF 899
E++AL N TW+ P K +G KWVYKIK +DG++ERYKARLVAKGYTQ EG+D+
Sbjct: 933 MEITALEDNGTWVVCSLPVGKKAVGCKWVYKIKLNADGSLERYKARLVAKGYTQTEGLDY 992
Query: 900 FDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHSPK--- 956
DTFSPVAK+TTV++LIA+A+ W L QLD++NAFL+G L E +YM++P G +SP+
Sbjct: 993 VDTFSPVAKLTTVKLLIAVAAAKGWSLSQLDISNAFLNGSLDEEIYMTLPPG-YSPRQGD 1051
Query: 957 ---PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLV 1013
PN VC+L KSLYGLKQASR+WY K + L G+ QS+ DH+LF S + A+LV
Sbjct: 1052 SFPPNAVCRLKKSLYGLKQASRQWYLKFSESLKALGFTQSSGDHTLFTRKSKNSYMAVLV 1111
Query: 1014 YVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDL 1073
YVDD+I+A + E + ++ L K++DLG L+YFLG+E+A + GISICQRKY L+L
Sbjct: 1112 YVDDIIIASSCDRETELLRDALQRSSKLRDLGTLRYFLGLEIARNTDGISICQRKYTLEL 1171
Query: 1074 LKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQL 1133
L +TGLLG K + P++P+ KL Q++ DD YR+LVGKL+YLT TRPDI + V +L
Sbjct: 1172 LAETGLLGCKSSSVPMEPNQKLSQEDGELIDDAEHYRKLVGKLMYLTFTRPDITYAVHRL 1231
Query: 1134 SQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSG 1193
QF +AP + H +++ YLKGT GQGL + + L+L GF D+D++ C DSR+ T+G
Sbjct: 1232 CQFTSAPRVPHLKAVYKIIYYLKGTVGQGLFYSANVDLKLSGFADSDFSSCSDSRKLTTG 1291
Query: 1194 YCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLF 1253
YC FLG+SL++W++KKQ ++ SS+EAEY+A+S A E+ WL +LL+DL + ++ VL+
Sbjct: 1292 YCMFLGTSLVAWKSKKQEVISMSSAEAEYKAMSMAVREMMWLRFLLEDLWIDVSEASVLY 1351
Query: 1254 CDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLAD 1304
CDN +AIHIA NPVFHERTKH+E D H +REK+ + + L +++++QLAD
Sbjct: 1352 CDNTAAIHIANNPVFHERTKHIERDYHHIREKIILGLIRTLHVRTENQLAD 1402
Score = 330 bits (845), Expect = 3e-88
Identities = 212/692 (30%), Positives = 328/692 (46%), Gaps = 87/692 (12%)
Query: 31 YVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAWN 90
++H +D P ++ L +NY+ W+ +M+ AL AKNK F+DGS P P + + + W+
Sbjct: 55 FLHNADHPGISIVSVQLDGANYNQWSSAMKIALDAKNKIAFIDGSCPRPEEGNHLLRIWS 114
Query: 91 RCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQD 150
RCN +V SWI+NSV I SI+ ++A +WN+L RF + R +L +I L+Q
Sbjct: 115 RCNSMVKSWILNSVNREIYGSILSFDDAAQIWNDLHNRFHMTNLPRTFQLVQQIQDLRQG 174
Query: 151 SRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLND 210
S +++ ++T LK L + L+ + C C + C + + AK R I+FL GLN+
Sbjct: 175 SMNLSTYYTTLKTLRDNLDGAEASVPCHCCKKSTCESQIF-AKSNVNRGRIIKFLAGLNE 233
Query: 211 SFDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGNGN 270
+ ++R QI++ PLP + ++++++ Q + Q + S V + V G + N
Sbjct: 234 KYSIIRGQIIMKKPLPDLAEVYNILDQDDSQRQFSNNVASAAFQVTKDDVQPGALASSSN 293
Query: 271 SNSNG----------KRSCSFCGRDGHTIDICYRKHGFPPNY--GNKNFAKVNNSSIEQN 318
G K CS G GHT + CY+ HG+P + G + K+ +S
Sbjct: 294 MPQPGMLGAVQKKDKKSICSHYGYTGHTSERCYKLHGYPVGWKKGKSFYEKIAQASQSSQ 353
Query: 319 EEREDLDDSKSCKGNSNTEPS------FGITKEQYEQLVTLLQSQQASSSKV----NLSH 368
+ + + GNS P+ ++K+Q + L+ L SQ +S V +S
Sbjct: 354 APKPNSAVTAQVTGNSQNTPAGLESLIGNMSKDQIQNLIALFSSQLQPASPVLNTAPMST 413
Query: 369 VTNHVTSGITRTSYTMN----------HSSFGTWIVDSGASDHICSSIKFFDSYAPIIPV 418
N+ SGIT +S T + + GTWIVDSGA+ H+C F + +
Sbjct: 414 SHNNDPSGITFSSSTFSFIGILTVSETEMTHGTWIVDSGATHHVCHVKDMFLNLDTSVQH 473
Query: 419 HIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKC 478
H+ LP G G + + LI +NVLY+ EF+LNLLSV L D V FD C
Sbjct: 474 HVNLPTGTTIRVGGVGNIAVNADLILKNVLYIPEFRLNLLSVSALTTDIGARVVFDPTCC 533
Query: 479 FIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFR 538
+ D L++ S+ + L + L F+
Sbjct: 534 VVHD------------------------------------LTKGSTIGSDLLTDVLGIFK 557
Query: 539 LGHLSNDRLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWG 598
N LL CDIC ++ KKL + N ++L+H D+WG
Sbjct: 558 ---TKNKGLLH---------------CDICQRAKQKKLTYPSRHNICLAPFDLLHIDVWG 599
Query: 599 PISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTD 658
P S + G+ YF+T +DD++R TW+ L K KS+V +FI +E Q++ KVK VR+D
Sbjct: 600 PFSEPTQEGYHYFLTIVDDHTRVTWVYLMKYKSDVLTIFPDFITMVETQYDTKVKAVRSD 659
Query: 659 NGPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
N PE + Y KGI SC ETP+QN V
Sbjct: 660 NAPELKFEELYRRKGIVAYHSCPETPEQNSVV 691
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626). [Arabidopsis thaliana]
gi|25301690|pir||G96722 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana
Length = 1315
Score = 552 bits (1422), Expect = e-155
Identities = 284/619 (45%), Positives = 406/619 (64%), Gaps = 23/619 (3%)
Query: 720 NSELPLENQSETNKEPAMHIDNNTHIQ-----DPTQIEHEPQQLNTRKSTRVSQKPNHLS 774
N P++ QS + P+ D+++ ++ +PT EP + + S R ++KP +L
Sbjct: 707 NPTPPMQRQSSDHVNPS---DSSSSVEILPSANPTNNVPEP---SVQTSHRKAKKPAYLQ 760
Query: 775 DYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQDCW 834
DY C+S ST + I+ + S + I+ + F + EP +Y EA + W
Sbjct: 761 DYYCHSVVSSTP-------HEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVW 813
Query: 835 VKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQV 894
AM +E L TW P + + IG +W++KIK+ SDG++ERYKARLVA+GYTQ
Sbjct: 814 RDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQK 873
Query: 895 EGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVHS 954
EGID+ +TFSPVAK+ +V++L+ +A+ L QLD++NAFL+GDL E +YM +PQG S
Sbjct: 874 EGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYAS 933
Query: 955 PK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFT 1009
+ PN VC+L KSLYGLKQASR+WY K + LL G+ QS DH+ F+ SD F
Sbjct: 934 RQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFL 993
Query: 1010 ALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKY 1069
+LVY+DD+I+A N+ +D +K+ + FK++DLG+LKYFLG+E+ S GI I QRKY
Sbjct: 994 CVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKY 1053
Query: 1070 CLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFV 1129
LDLL +TG LG KP + P+DPS+ D+ ++ YRRL+G+L+YL TRPDI F
Sbjct: 1054 ALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFA 1113
Query: 1130 VQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRR 1189
V +L+QF AP H ++++Y+KGT GQGL + S+LQL + +AD+ C DSRR
Sbjct: 1114 VNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRR 1173
Query: 1190 STSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKL 1249
STSGYC FLG SLI W+++KQ V++SS+EAEYR+LS A+ EL WL LK+L+V +K
Sbjct: 1174 STSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKP 1233
Query: 1250 PVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKP 1309
+LFCDN++AIHIA N VFHERTKH+E DCH VRE+L + +F+L I ++ Q+AD FTKP
Sbjct: 1234 TLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKP 1293
Query: 1310 LPPKNFHSFLPKLNMIDLY 1328
L P +FH + K+ +++++
Sbjct: 1294 LYPSHFHRLISKMGLLNIF 1312
Score = 345 bits (884), Expect = 8e-93
Identities = 217/637 (34%), Positives = 314/637 (49%), Gaps = 78/637 (12%)
Query: 59 MRRALGAKNKFDFVDGSIPVPTDFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENA 118
M ++ AKNK FVDGSIP P D DP K W RCN +V SW++NSV I SI++ A
Sbjct: 1 MTTSIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTA 60
Query: 119 IDVWNELKERFSQGDFIRISELQCEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCA 178
+W +L RF + R+ +L+ +I SL+Q + ++ + T + LWEEL + P
Sbjct: 61 AAIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVP--- 117
Query: 179 CPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQH 238
V + + E R I FL GLND +D VRSQIL+ LP+++++F+M+ Q
Sbjct: 118 --------RTVEDLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMIDQD 169
Query: 239 ERQFKISIPVEDS-TILVNSAGKSQGRGRGNGNSNSNGKRS-CSFCGRDGHTIDICYRKH 296
E Q I T V + NG++ +R CS+C R GH D CY+KH
Sbjct: 170 ETQRSARISTTPGMTSSVFPVSNQSSQSALNGDTYQKKERPVCSYCSRPGHVEDTCYKKH 229
Query: 297 GFPPNYGNKN-FAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQ 355
G+P ++ +K F K + S+ E ++++ G+ +T Q +QLV+ L
Sbjct: 230 GYPTSFKSKQKFVKPSISANAAIGSEEVVNNTSVSTGD--------LTTSQIQQLVSFLS 281
Query: 356 SQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPI 415
S+ S V HS S +SD
Sbjct: 282 SKLQPPSTPVQPEV----------------HSI-------SVSSD--------------- 303
Query: 416 IPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDN 475
P+ + + SG+V+ LI +VL++ +FK NLLSV L C + FD
Sbjct: 304 -------PSSSSTVCPISGSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDE 356
Query: 476 DKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALW 535
C +QD + M G+G+ + LY ++L S +H + SS + + LW
Sbjct: 357 TSCVLQDATRELMVGMGKQVANLYIVDLDS-----LSHPG----TDSSITVASVTSHDLW 407
Query: 536 HFRLGHLSNDRLLRMQQ--HFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIH 593
H RLGH S +L M FP K +++ C +CH S+ K LPF NK+S ++LIH
Sbjct: 408 HKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIH 467
Query: 594 FDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVK 653
D WGP S + G++YF+T +DDYSR TW+ L + KS+V + F+ +ENQF +K
Sbjct: 468 IDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIK 527
Query: 654 TVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
VR+DN PE FY SKGI SC ETPQQN V
Sbjct: 528 GVRSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVV 564
>gb|AAG50751.1| polyprotein, putative [Arabidopsis thaliana] gi|25301686|pir||F96610
probable polyprotein T8L23.26 [imported] - Arabidopsis
thaliana
Length = 1468
Score = 550 bits (1418), Expect = e-155
Identities = 286/622 (45%), Positives = 405/622 (64%), Gaps = 6/622 (0%)
Query: 709 PIIPATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQ 768
PIIP Q SS+ P E S ++ +P + + D P + R+S+R +Q
Sbjct: 848 PIIPEINQESSS---PSEFVSLSSLDPFL-ASSTVQTADLPLSSTTPAPIQLRRSSRQTQ 903
Query: 769 KPNHLSDYVCNSSS--DSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYK 826
KP L ++V N+ S + +ASS LYPI+ Y + ++SH+ F A+T EP +Y
Sbjct: 904 KPMKLKNFVTNTVSVESISPEASSSSLYPIEKYVDCHRFTSSHKAFLAAVTAGMEPTTYN 963
Query: 827 EASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARL 886
EA W +AM++E+ +L N+T+ V+ PP + +G+KWVYKIK++SDG IERYKARL
Sbjct: 964 EAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARL 1023
Query: 887 VAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYM 946
V G Q EG+D+ +TF+PVAK++TVR+ + +A+ WH+HQ+DV+NAFLHGDL E VYM
Sbjct: 1024 VVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAFLHGDLKEEVYM 1083
Query: 947 SVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDT 1006
+PQG P++VC+L KSLYGLKQA R W+ KL+ L G+ QS SD+SLF ++D
Sbjct: 1084 KLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNNDG 1143
Query: 1007 CFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQ 1066
F +LVYVDD+I++G+ + + K+ L+ F +KDLG LKYFLGIEV+ + G + Q
Sbjct: 1144 IFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLSQ 1203
Query: 1067 RKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDI 1126
RKY LD++ + GLLGA+P PL+ + KL SP D YRRLVG+L+YL TRP++
Sbjct: 1204 RKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPEL 1263
Query: 1127 AFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPD 1186
++ V L+QF+ P H++ A RVV+YLK PGQG+L S LQ+ G+ D+D+A CP
Sbjct: 1264 SYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACPL 1323
Query: 1187 SRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKC 1246
+RRS +GY LG + ISW+ KKQ TV+RSS+EAEYRA++F + EL WL +L DL V
Sbjct: 1324 TRRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSH 1383
Query: 1247 NKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFF 1306
+ +F D++SAI ++ NPV HERTKH+E+DCHF+R+ + I + S QLAD
Sbjct: 1384 VQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADIL 1443
Query: 1307 TKPLPPKNFHSFLPKLNMIDLY 1328
TK L K FL KL ++D++
Sbjct: 1444 TKALGEKEVRYFLRKLGILDVH 1465
Score = 314 bits (804), Expect = 1e-83
Identities = 205/694 (29%), Positives = 346/694 (49%), Gaps = 74/694 (10%)
Query: 30 YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
Y + A+D +V P+L +NY WA + AL ++ KF F+DG+IP P D P+ + W
Sbjct: 21 YDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLEDW 80
Query: 90 NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
N L+ SW+ +++ + +I + A D+W ++++RFS + + +++ ++ + KQ
Sbjct: 81 LTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATCKQ 140
Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLN 209
+ +V ++ L +W+ + +Y P +C C RC+C G K++ E ++L GLN
Sbjct: 141 EGMTVEGYYGKLNKIWDNINSYRPLRICKC-GRCICNLGTDQEKYR-EDDMVHQYLYGLN 198
Query: 210 DS-FDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVEDSTILVNSAGKSQGRGRGN 268
++ F +RS + PLP + +++++V Q E E+ T + A + + R
Sbjct: 199 ETKFHTIRSSLTSRVPLPGLEEVYNIVRQEEDMVNNRSSNEERTDVTAFAVQMRPRSEVI 258
Query: 269 GNSNSN-----GKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVN-NSSIEQNEER- 321
+N K+ C+ C R GH+ + C+ G+P +G++ K N N S + R
Sbjct: 259 SEKFANSEKLQNKKLCTHCNRGGHSPENCFVLIGYPEWWGDRPRGKSNSNGSTSRGRGRF 318
Query: 322 ----------------------EDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQA 359
+ +S+ + G+T EQ+ +V LL + +
Sbjct: 319 GPGFNGGQPRPTYVNVVMTGPFPSSEHVNRVITDSDRDAVSGLTDEQWRGVVKLLNAGR- 377
Query: 360 SSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVH 419
S +K N +H T T S F +WI+D+GAS H+ +++ + PV
Sbjct: 378 SDNKSN-AHETQSGTC-----------SLFTSWILDTGASHHMTGNLELLSDMRSMSPVL 425
Query: 420 IKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCF 479
I L +GN +A GTV LI ++V YV E + +L+SV ++ +N+C+
Sbjct: 426 IILADGNKRVAVSEGTVRLGSHLILKSVFYVKELESDLISVGQMMDENHCV--------- 476
Query: 480 IQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRL 539
D++ +T +G+ G + F A +S F LWH RL
Sbjct: 477 --DRTTRMVTRIGKRENGSFC----------FRGMENAAAVHTSVKAPF----DLWHRRL 520
Query: 540 GHLSNDRLLRM--QQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIW 597
GH S D+++ + ++ K +VCD C ++ + F LS N++ ++LIH D+W
Sbjct: 521 GHAS-DKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLIHCDVW 579
Query: 598 GPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRT 657
GP S G +YF+T +DDYSR W+ L KSE K +++FI +E QF+ ++K VR+
Sbjct: 580 GPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKIVRS 639
Query: 658 DNGPEFL-MPDFYSSKGIEHQTSCVETPQQNGRV 690
DNG EFL M +++ KGI H+TSCV TP QNGRV
Sbjct: 640 DNGTEFLCMREYFLHKGIAHETSCVGTPHQNGRV 673
>emb|CAB79271.1| putative protein [Arabidopsis thaliana] gi|3021268|emb|CAA18463.1|
putative protein [Arabidopsis thaliana]
gi|7485945|pir||T04833 hypothetical protein F21P8.50 -
Arabidopsis thaliana
Length = 1240
Score = 547 bits (1409), Expect = e-153
Identities = 270/546 (49%), Positives = 371/546 (67%), Gaps = 12/546 (2%)
Query: 745 IQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSSDSTKQASSGILYPIKHYHSLNN 804
I I+++ + + S R ++KP +L DY C+S + T ++ I + S
Sbjct: 16 IMPSANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLT-------IHDISQFLSYEK 68
Query: 805 ISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIG 864
+S + F + I A EP +Y EA + W AM+ E+ A+ TW PPN KPIG
Sbjct: 69 VSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIG 128
Query: 865 SKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSW 924
KWVYKIK+ SDGTIERYKARLVAKGYTQ EGIDF +TFSPV K+T+V++++A+++I ++
Sbjct: 129 CKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNF 188
Query: 925 HLHQLDVNNAFLHGDLSENVYMSVPQGV-----HSPKPNQVCKLLKSLYGLKQASRKWYE 979
LHQLD++NAFL+GDL E +YM +P G S PN VC L KS+YGLKQASR+W+
Sbjct: 189 TLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFL 248
Query: 980 KLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF 1039
K + L+ G+ QS SDH+ F+ + T F +LVYVDD+I+ N+ +D +K+ L F
Sbjct: 249 KFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCF 308
Query: 1040 KIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDN 1099
K++DLG LKYFLG+E+A S GI+ICQRKY LDLL +TGLLG KP + P+DPS+ +
Sbjct: 309 KLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHS 368
Query: 1100 SPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTP 1159
D +YRRL+G+L+YL TR DI+F V +LSQF AP + H +++ Y+KGT
Sbjct: 369 GGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTV 428
Query: 1160 GQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSE 1219
GQGL + +++QL F+DA + C D+RRST+GYC FLG+SLISW++KKQ V++SS+E
Sbjct: 429 GQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAE 488
Query: 1220 AEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDC 1279
AEYRALSFA+ E+ WL ++L++ +K +LFCDN +AIHIA N VFHERTKH+E DC
Sbjct: 489 AEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDC 548
Query: 1280 HFVREK 1285
H VRE+
Sbjct: 549 HSVRER 554
>ref|NP_194047.2| protein kinase family protein [Arabidopsis thaliana]
Length = 1262
Score = 547 bits (1409), Expect = e-153
Identities = 270/546 (49%), Positives = 371/546 (67%), Gaps = 12/546 (2%)
Query: 745 IQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDYVCNSSSDSTKQASSGILYPIKHYHSLNN 804
I I+++ + + S R ++KP +L DY C+S + T ++ I + S
Sbjct: 16 IMPSANIQNDVPEPSVHTSHRRTRKPAYLQDYYCHSVASLT-------IHDISQFLSYEK 68
Query: 805 ISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIG 864
+S + F + I A EP +Y EA + W AM+ E+ A+ TW PPN KPIG
Sbjct: 69 VSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIG 128
Query: 865 SKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSW 924
KWVYKIK+ SDGTIERYKARLVAKGYTQ EGIDF +TFSPV K+T+V++++A+++I ++
Sbjct: 129 CKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNF 188
Query: 925 HLHQLDVNNAFLHGDLSENVYMSVPQGV-----HSPKPNQVCKLLKSLYGLKQASRKWYE 979
LHQLD++NAFL+GDL E +YM +P G S PN VC L KS+YGLKQASR+W+
Sbjct: 189 TLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFL 248
Query: 980 KLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEF 1039
K + L+ G+ QS SDH+ F+ + T F +LVYVDD+I+ N+ +D +K+ L F
Sbjct: 249 KFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCF 308
Query: 1040 KIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDN 1099
K++DLG LKYFLG+E+A S GI+ICQRKY LDLL +TGLLG KP + P+DPS+ +
Sbjct: 309 KLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHS 368
Query: 1100 SPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTP 1159
D +YRRL+G+L+YL TR DI+F V +LSQF AP + H +++ Y+KGT
Sbjct: 369 GGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTV 428
Query: 1160 GQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSE 1219
GQGL + +++QL F+DA + C D+RRST+GYC FLG+SLISW++KKQ V++SS+E
Sbjct: 429 GQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAE 488
Query: 1220 AEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDC 1279
AEYRALSFA+ E+ WL ++L++ +K +LFCDN +AIHIA N VFHERTKH+E DC
Sbjct: 489 AEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDC 548
Query: 1280 HFVREK 1285
H VRE+
Sbjct: 549 HSVRER 554
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301701|pir||E84589 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1461
Score = 538 bits (1387), Expect = e-151
Identities = 272/571 (47%), Positives = 378/571 (65%), Gaps = 17/571 (2%)
Query: 765 RVSQKPNHLSDYVCN--SSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEP 822
R+++ P HL DY C + DS +PI S + IS SH + I+ P
Sbjct: 897 RITKFPAHLQDYHCYFVNKDDS---------HPISSSLSYSQISPSHMLYINNISKIPIP 947
Query: 823 ISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERY 882
SY EA W A++ E+ A+ TW PP K +G KWV+ +K +DG++ER+
Sbjct: 948 QSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERF 1007
Query: 883 KARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSE 942
KAR+VAKGYTQ EG+D+ +TFSPVAK+ TV++L+ +++ W+L+QLD++NAFL+GDL E
Sbjct: 1008 KARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEE 1067
Query: 943 NVYMSVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDH 997
+YM +P G K PN VC+L KS+YGLKQASR+W+ K + LL G+++ DH
Sbjct: 1068 TIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDH 1127
Query: 998 SLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAH 1057
+LF+ + F LLVYVDD+++A + + L FK+++LG LKYFLG+EVA
Sbjct: 1128 TLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVAR 1187
Query: 1058 SKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLL 1117
+ GIS+ QRKY L+LL +L KP + P+ P+I+L +++ +D YRRLVGKL+
Sbjct: 1188 TSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLM 1247
Query: 1118 YLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFT 1177
YLT TRPDI F V +L QF +AP H +V++Y+KGT GQGL + + L L G+T
Sbjct: 1248 YLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYT 1307
Query: 1178 DADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLY 1237
DADW CPDSRRST+G+ F+GSSLISWR+KKQ TV+RSS+EAEYRAL+ ASCE+ WL
Sbjct: 1308 DADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLST 1367
Query: 1238 LLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIK 1297
LL LRV + +P+L+ D+ +A++IA NPVFHERTKH+EIDCH VREKL KLL +K
Sbjct: 1368 LLLALRVH-SGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVK 1426
Query: 1298 SQSQLADFFTKPLPPKNFHSFLPKLNMIDLY 1328
++ Q+AD TKPL P F L K+++ +++
Sbjct: 1427 TKDQVADILTKPLFPYQFAHLLSKMSIQNIF 1457
Score = 377 bits (969), Expect = e-102
Identities = 235/706 (33%), Positives = 364/706 (51%), Gaps = 75/706 (10%)
Query: 21 DPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPT 80
DP+Q P +++H++D P I+ L + Y W+ +MR +L AKNK FVDGS+P P
Sbjct: 60 DPTQSP---FFLHSADHPGLSIISHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPL 116
Query: 81 DFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISEL 140
+ DPNF+ W+RCN +V SW++NSV I +SI+ L +A D+W +L +RF+ + R L
Sbjct: 117 ESDPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNL 176
Query: 141 QCEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITR 200
EI L+Q + S++E++T LK LW++L++ A C C V + E +
Sbjct: 177 TQEIQDLRQGTMSLSEYYTLLKTLWDQLDS-----TEALDDPCTCGKAV-RLYQKAEKAK 230
Query: 201 SIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQ------------FKIS--- 245
++FL GLN+S+ +VR QI+ LP++ +++ ++ Q Q F++S
Sbjct: 231 IMKFLAGLNESYAIVRRQIIAKKALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSEVS 290
Query: 246 -IPVEDSTILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGN 304
P+ I+ +G ++GR +CSFC R GH + CY+KHGFPP +
Sbjct: 291 HSPITSPEIMYVQSGPNKGRP------------TCSFCNRVGHIAERCYKKHGFPPGFTP 338
Query: 305 KNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQ------- 357
K + + + L K +F + +Q + L+ L SQ
Sbjct: 339 KGKSSDKPPKPQAVAAQVTLSPDKMTGQLETLAGNF--SPDQIQNLIALFSSQLQPQIVS 396
Query: 358 -QASSSKVNLSHVTNHVTSGITRTSYT--------MNHSSFG--TWIVDSGASDHICSSI 406
Q +SS+ S + SGI + T ++H+S TW++DSGA+ H+
Sbjct: 397 PQTASSQHEASSSQSVAPSGILFSPSTYCFIGILAVSHNSLSSDTWVIDSGATHHVSHDR 456
Query: 407 KFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMD 466
K F + I + LP G GTV + +I +NVL++ EF+LNL+S+ L D
Sbjct: 457 KLFQTLDTSIVSFVNLPTGPNVRISGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTD 516
Query: 467 NNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSST 526
V FD C IQD + G G+ I LY L+ S P I+++
Sbjct: 517 LGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQS---------PAISVNA----- 562
Query: 527 TFLPQEALWHFRLGHLSNDRLLRMQQHFPCI--KVDSNSVCDICHYSRHKKLPFKLSMNK 584
+ ++WH RLGH S RL + + K ++ C +CH ++ KKL F + N
Sbjct: 563 --VVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNI 620
Query: 585 ASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNI 644
+ +EL+H D+WGP S ++ G+KYF+T +DD+SR TWI L K+KS+V FI +
Sbjct: 621 CNSTFELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLV 680
Query: 645 ENQFNCKVKTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
ENQ++ +VK+VR+DN E +FY +KGI SC ETP+QN V
Sbjct: 681 ENQYDTRVKSVRSDNAKELAFTEFYKAKGIVSFHSCPETPEQNSVV 726
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
11.19) [Arabidopsis thaliana] gi|7486705|pir||T01879
hypothetical protein F8M12.17 - Arabidopsis thaliana
Length = 1633
Score = 536 bits (1380), Expect = e-150
Identities = 283/628 (45%), Positives = 393/628 (62%), Gaps = 52/628 (8%)
Query: 717 TSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPNHLSDY 776
+S++S PL + T A+ ID N+ + + R ++ P +LS+Y
Sbjct: 831 SSASSIPPLPSTVNTQNTDALDIDTNS--------------VPIARPKRNAKAPAYLSEY 876
Query: 777 VCNS----------SSDSTKQASSGIL-------YPIKHYHSLNNISASHQKFALAITDA 819
CNS +S S + SS I YP+ S + ++ + A
Sbjct: 877 HCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTPLFHSYICAYNVE 936
Query: 820 SEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTI 879
+EP ++ +A + + W +A N EL AL NKTWI +G KWV+ IK+ DG+I
Sbjct: 937 TEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTIKYNPDGSI 996
Query: 880 ERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGD 939
ERYKARLVA+G+TQ EGID+ +TFSPVAK +V++L+ LA+ W L Q+DV+NAFLHG+
Sbjct: 997 ERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGE 1056
Query: 940 LSENVYMSVPQGVHSPK-----PNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSA 994
L E +YMS+PQG P VC+LLKSLYGLKQASR+WY++L+ L + QS
Sbjct: 1057 LDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSP 1116
Query: 995 SDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIE 1054
+D+++F+ S T +LVYVDD+++A N + ++ +K +L EFKIKDLG ++FLG+E
Sbjct: 1117 ADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLE 1176
Query: 1055 VAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVG 1114
+A S GIS+CQRKY +LL+D GL G KP + P+DP++ L ++ + SYR LVG
Sbjct: 1177 IARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVG 1236
Query: 1115 KLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLL 1174
+LLYL TRPDI F V LSQFL+APT H A +V++YLKG PGQ
Sbjct: 1237 RLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQ------------- 1283
Query: 1175 GFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQW 1234
DADW C DSRRS +G+C +LG+SLI+W++KKQ V+RSS+E+EYR+L+ A+CE+ W
Sbjct: 1284 ---DADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIW 1340
Query: 1235 LLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLL 1294
L LLKDL V LFCDN+SA+H+A NPVFHERTKH+EIDCH VR++++ K L
Sbjct: 1341 LQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTL 1400
Query: 1295 PIKSQSQLADFFTKPLPPKNFHSFLPKL 1322
+ + +QLAD TKPL P FHS L ++
Sbjct: 1401 HVPTGNQLADILTKPLHPGPFHSLLKRI 1428
Score = 315 bits (808), Expect = 5e-84
Identities = 210/691 (30%), Positives = 320/691 (45%), Gaps = 84/691 (12%)
Query: 23 SQQPGNVYYVHASDGPSSVAITPVLSH-SNYHSWARSMRRALGAKNKFDFVDGSIPVPTD 81
+ Q N +++H SD V ++ L+ S++HSW RS+ AL +NK F+DG+I P
Sbjct: 28 ADQYENPHHLHTSDHAGLVLVSERLNTASDFHSWRRSIWMALNVRNKLGFIDGTIVKPPL 87
Query: 82 FDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQ 141
++ AW+RCN V +W+MNSV I QS++F+ A +W + RF Q D R+ +++
Sbjct: 88 DHRDYGAWSRCNDTVSTWLMNSVSKKIGQSLLFIPTAEGIWKNMLSRFKQDDAPRVYDIE 147
Query: 142 CEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRS 201
+ ++Q S ++ ++T L+ LWEE + Y+ PVC C RC C V + Q +
Sbjct: 148 QRLSKIEQGSMDISAYYTELQTLWEEHKNYVDLPVCTCG-RCECDAAVKWERLQQR-SHV 205
Query: 202 IRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKIS-IPVEDSTILVNSAGK 260
+FL GLN+S++ R IL++ P+ TI + F++V Q ERQ I P D
Sbjct: 206 TKFLMGLNESYEQTRRHILMLKPIRTIEEAFNIVTQDERQKAIRPTPKVD---------- 255
Query: 261 SQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEE 320
N + C+ CG+ GHT+ CY+ G+PP Y + + +
Sbjct: 256 ---------NQDQLKLPLCTNCGKVGHTVQKCYKIIGYPPGYKAATSYRQPQIQTQPRMQ 306
Query: 321 REDLDDSKSCKGNSNTEPSFGITKEQYEQLVTL--------------LQSQQASSSKV-- 364
+ + + F E T L +Q ++S +
Sbjct: 307 MPQQSQPRMQQPIQHLISQFNAQVRVQEPAATSIYTSSPTATITEHGLMAQTSTSGTIPF 366
Query: 365 ---NLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIK 421
+L + N++T S N S WI+DSGAS H+CS + F + V +
Sbjct: 367 PSTSLKYENNNLTFQNHTLSSLQNVLSSDAWIIDSGASSHVCSDLTMFRELIHVSGVTVT 426
Query: 422 LPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQ 481
LPNG +GT+ + LI NVL V +FK NL+SV C ++
Sbjct: 427 LPNGTRVAITHTGTICITSTLILHNVLLVPDFKFNLISV-----------------CCLE 469
Query: 482 DKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGH 541
L M G G+ LY L FS +L ++S LP
Sbjct: 470 LTRGL-MIGRGKTYNNLYILETQRTSFSP-------SLPAATSRHPSLPA---------- 511
Query: 542 LSNDRLLRMQQHFPCIKVDSNSV--CDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGP 599
L ++ P +K S++ C I ++ K+L + N AS ++LIH DIWGP
Sbjct: 512 -----LQKLVSSIPSLKSVSSTASHCRISPLAKQKRLAYVSHNNLASSPFDLIHLDIWGP 566
Query: 600 ISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDN 659
S S+ G +YF+T +DD +R TW+ + K KSEVS F+ I Q+N K+K +R+DN
Sbjct: 567 FSIESVDGFRYFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDN 626
Query: 660 GPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
E F +G+ HQ SC TPQQN V
Sbjct: 627 VKELAFTKFVKEQGMIHQFSCAYTPQQNSVV 657
>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa (japonica cultivar-group)]
gi|50925209|ref|XP_472906.1| OSJNBb0011N17.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1262
Score = 531 bits (1367), Expect = e-149
Identities = 283/619 (45%), Positives = 393/619 (62%), Gaps = 25/619 (4%)
Query: 723 LPLENQSETNKEPAMHIDNNTHIQDPT-----QIEHEPQQLNT----RKSTR--VSQKPN 771
LP Q E + + + D+ TH+Q + QIE ++ N RK R + P
Sbjct: 655 LPTTQQVEVDDQVS---DDLTHVQVSSESGGEQIEIREEESNLPIAIRKGMRSNAGKPPQ 711
Query: 772 HLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQ 831
+ + S D I +Y S ++S++++ F ++ A P +KEA Q
Sbjct: 712 RYGFEIGDESGDEND---------IANYVSYTSLSSTYKAFVASLNSAIIPKDWKEAKQD 762
Query: 832 DCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGY 891
W +AM EL AL NKTW V P K + KWVY +K DG +ERYKARLVAKGY
Sbjct: 763 PRWHQAMLDELEALEKNKTWDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGY 822
Query: 892 TQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQG 951
+Q GID+ +TF+PVAK++TVR +I+ A W LHQLDV NAFLHGDL E VYM +P G
Sbjct: 823 SQTYGIDYDETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPG 882
Query: 952 VHSPKPN-QVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTA 1010
+ + +V +L KSLYGLKQ+ R W+++ + GYKQ DH++F HS T
Sbjct: 883 FATLQTKGKVLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQCNGDHTVFYHHSGDHITI 942
Query: 1011 LLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYC 1070
L VYVDD+I+ GN +EI R+K L EF++KDLG+LKYFLGIE+A S GI + QRKY
Sbjct: 943 LAVYVDDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYA 1002
Query: 1071 LDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVV 1130
LDLL DTG+LG +P +TP+D + KL ++ P + Y+RLVG+L+YL TRPDI + V
Sbjct: 1003 LDLLSDTGMLGCRPASTPVDQNHKLCAESGNPVNKE-RYQRLVGRLIYLCHTRPDITYAV 1061
Query: 1131 QQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRS 1190
+S++++ P H D R+++YLKG+PG+GL F+++ L++ G+ DADWA CPD RRS
Sbjct: 1062 SMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEVEGYCDADWASCPDDRRS 1121
Query: 1191 TSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLP 1250
TSGYC F+G +L+SWR+KKQ V+RS++EAEYRA+S + EL WL LL +L + +
Sbjct: 1122 TSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSVSLSELLWLRNLLSELMLPVDTPM 1181
Query: 1251 VLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPL 1310
L+CDN+SAI IA NPV H+RTKH+E+D F++EKL + + +L + S Q+AD FTK L
Sbjct: 1182 KLWCDNKSAISIANNPVQHDRTKHVELDRFFIKEKLDEGVLELEFVMSGGQVADCFTKGL 1241
Query: 1311 PPKNFHSFLPKLNMIDLYN 1329
K +S K+ MID+Y+
Sbjct: 1242 GVKECNSSCDKMGMIDIYH 1260
Score = 123 bits (309), Expect = 4e-26
Identities = 104/380 (27%), Positives = 161/380 (42%), Gaps = 45/380 (11%)
Query: 47 LSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDP-NFKAWNRCNMLVHSWIMNSVE 105
L NY SW+R L K +V G + P + +K W+ N LV +W++ S+
Sbjct: 51 LGVKNYLSWSRRALLILKTKGLEGYVTGEVKEPENTSSVEWKTWSTTNSLVVAWLLTSLI 110
Query: 106 DSIAQSIVFLENAIDVWNELKERFS-QGDFIRISELQCEIFSLKQDSRSVTEFFTALKVL 164
+IA ++ + +A ++W L + +S +G+ + + E Q +I +L+Q RSV E+ LK L
Sbjct: 111 PAIATTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERSVAEYVAELKSL 170
Query: 165 WEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNP 224
W +L+ Y P + CI + K E R I FL GLN F+ R +
Sbjct: 171 WSDLDHYDPLGL----EHSDCIAKM---KKWVERRRVIEFLKGLNPEFEGRRDAMFHQTT 223
Query: 225 LPTINKIFSMVMQHERQFKI---SIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKRSCSF 281
LPT+++ + + Q E + K+ + P S GK R C
Sbjct: 224 LPTLDEAIAAMAQEELKKKVLPSAAPCSPSPTYAIVQGKET--------------RECFN 269
Query: 282 CGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFG 341
CG GH + C+ P YG + +R + G SN +G
Sbjct: 270 CGEMGHLMRDCHAPR--KPTYGRG-----------RGVDRGGTRGGRGYAGRSNRGRGYG 316
Query: 342 ITKEQYEQLVTLLQSQQASSSKVNLSHVTN--HVTSGITRTSYTMNHSSFGTWIVDSGAS 399
+ VTL + SS +V N H TSG ++ ++S +WI+DSGAS
Sbjct: 317 YRGDYKANAVTL----EEGSSGTTPDNVANFAHSTSGSFNQAFMSMNTSHSSWILDSGAS 372
Query: 400 DHICSSIKFFDSYAPIIPVH 419
H+ F SY P H
Sbjct: 373 RHVTGMSGEFTSYKPYSFAH 392
>dbj|BAB11447.1| polyprotein-like [Arabidopsis thaliana]
Length = 509
Score = 530 bits (1365), Expect = e-148
Identities = 260/496 (52%), Positives = 346/496 (69%), Gaps = 4/496 (0%)
Query: 837 AMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEG 896
AMN EL + NKTW V PPN +G KWVY I++ +DG+IERYKARLVAKG+TQ EG
Sbjct: 2 AMNVELGVMELNKTWSVVSLPPNKNVVGCKWVYTIEYNADGSIERYKARLVAKGFTQQEG 61
Query: 897 IDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQGVH--- 953
+D+FDTFSPVAK+ +V++++ L + W Q+DV NAFLH DL E +YMS+ QG
Sbjct: 62 VDYFDTFSPVAKLASVKLVLGLVARKGWSTTQMDVTNAFLHSDLEEEIYMSLAQGYTPSS 121
Query: 954 -SPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALL 1012
S PN VC+L KS+YGLKQASR+WY+ L+ LL G++QS D++LF+ + T A+L
Sbjct: 122 GSLPPNPVCRLHKSIYGLKQASRQWYKCLSQTLLDDGFQQSYVDNTLFVKITSTAIVAML 181
Query: 1013 VYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLD 1072
+YVDD+++ N+ + +K+VL +KIKDLG K+FLG+E+A + GISICQRKYCLD
Sbjct: 182 IYVDDILIVSNNDEVVCAVKSVLAARYKIKDLGPAKFFLGLEIARNSDGISICQRKYCLD 241
Query: 1073 LLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQ 1132
LL ++GLLG KP + P+DP + L +D +D YR L+G+LLYL TRPDI F V
Sbjct: 242 LLANSGLLGCKPKSVPMDPKVVLTKDLGTLLEDGRPYRELIGRLLYLCVTRPDITFAVHN 301
Query: 1133 LSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTS 1192
LSQFL+ PT H A +V+KYLK PGQGL ++L L GF DADW C DSRRS S
Sbjct: 302 LSQFLSCPTNVHLHAAHQVLKYLKNNPGQGLFSSAGTELYLNGFADADWGTCLDSRRSVS 361
Query: 1193 GYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVL 1252
G C FLG+SLI+W++KKQ + SS+EAEYR+++ A+ EL WL +LKDL V+ L
Sbjct: 362 GVCVFLGTSLITWKSKKQEVASGSSTEAEYRSMAVATKELLWLAQMLKDLHVEMEFQVKL 421
Query: 1253 FCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPP 1312
FCDN+SA+HIA N VFHERTKH+EIDCH R++++ K+L + +++QLAD TK L P
Sbjct: 422 FCDNKSAMHIANNSVFHERTKHVEIDCHTTRDRVKNGFLKVLHVDTENQLADILTKALQP 481
Query: 1313 KNFHSFLPKLNMIDLY 1328
F S L +L++ L+
Sbjct: 482 GPFRSILGRLSVSSLF 497
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 530 bits (1364), Expect = e-148
Identities = 270/622 (43%), Positives = 382/622 (61%), Gaps = 39/622 (6%)
Query: 712 PATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQIEHEPQQLNTRKSTRVSQKPN 771
P + + +LPLE S + P + ++ + + +P S R + P
Sbjct: 841 PLLQFPARTDDLPLEQTSIIDTHPHQDVSSSKAL-----VPFDPL------SKRQKKPPK 889
Query: 772 HLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQ 831
HL D+ H NN + F IT+A P Y EA
Sbjct: 890 HLQDF-----------------------HCYNNTTEPFHAFINNITNAVIPQRYSEAKDF 926
Query: 832 DCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGY 891
W AM E+ A+ TW V PPN K IG KWV+ IKH +DG+IERYKARLVAKGY
Sbjct: 927 KAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGY 986
Query: 892 TQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQG 951
TQ EG+D+ +TFSPVAK+T+VR+++ LA+ W +HQLD++NAFL+GDL E +YM +P G
Sbjct: 987 TQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPG 1046
Query: 952 V-----HSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDT 1006
+ P+ +C+L KS+YGLKQASR+WY KL+ L G+++S +DH+LFI +++
Sbjct: 1047 YADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANG 1106
Query: 1007 CFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQ 1066
+LVYVDD+++ NS + + A L FK++DLG KYFLGIE+A S+ GISICQ
Sbjct: 1107 VLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQ 1166
Query: 1067 RKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDI 1126
RKY L+LL TG LG+KP + PLDPS+KL++++ P D SYR+LVGKL+YL TRPDI
Sbjct: 1167 RKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDI 1226
Query: 1127 AFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPD 1186
A+ V L QF +APT H +V++YLKGT GQGL + D + L G+TD+D+ C D
Sbjct: 1227 AYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTD 1286
Query: 1187 SRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKC 1246
SRR + YC F+G L+SW++KKQ TV+ S++EAE+RA+S + E+ WL L D +V
Sbjct: 1287 SRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPF 1346
Query: 1247 NKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFF 1306
L+CDN +A+HI N VFHERTK +E+DC+ RE ++ K + +++ Q+AD
Sbjct: 1347 IPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPL 1406
Query: 1307 TKPLPPKNFHSFLPKLNMIDLY 1328
TK + P FH + K+ + +++
Sbjct: 1407 TKAIHPAQFHKLIGKMGVCNIF 1428
Score = 285 bits (730), Expect = 6e-75
Identities = 207/706 (29%), Positives = 315/706 (44%), Gaps = 117/706 (16%)
Query: 30 YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
Y++H+SD P ++ +L +NY++W+ +MR +L AKNK FVDGS+P P D FK W
Sbjct: 68 YFLHSSDHPGLNIVSHILDGTNYNNWSIAMRMSLDAKNKLSFVDGSLPRPDVSDRMFKIW 127
Query: 90 NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
+RCN +V +W++N V ++WN+L RF + R +L+ I +LKQ
Sbjct: 128 SRCNSMVKTWLLNVV--------------TEMWNDLFSRFRVSNLPRKYQLEQSIHTLKQ 173
Query: 150 DSRSVTEFFTALKVLWEEL--EAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTG 207
+ ++ ++T K LWE+L L C C H V + E +R I+FL G
Sbjct: 174 GNLDLSTYYTKKKTLWEQLANTRVLTVRKCNCEH-------VKELLEEAETSRIIQFLMG 226
Query: 208 LNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIP----------VEDSTILVNS 257
LND+F +R QIL M P P + +I++M+ Q E Q + P V+ S I+ +
Sbjct: 227 LNDNFAHIRGQILNMKPRPGLTEIYNMLDQDESQRLVGNPTLSNPTAAFQVQASPIIDSQ 286
Query: 258 AGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPP--------NYGNKNFAK 309
+QG S K CS+C + GH +D CY+KHG+PP G+ N A
Sbjct: 287 VNMAQG---------SYKKPKCSYCNKLGHLVDKCYKKHGYPPGSKWTKGQTIGSTNLAS 337
Query: 310 -----VNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQASSSKV 364
VN + E+ + E+ + S I T S AS S
Sbjct: 338 TQLQPVNETPNEKTDSYEEFSTDQIQTMISYLSTKLHIASAS-PMPTTSSASISASPSVP 396
Query: 365 NLSHVTNHVTSGITRTSYTMNHSSFGT--------WIVDSGASDHICSSIKFFDSYAPII 416
+S ++ S + Y M SS W++DSGA+ H+ + + ++ +
Sbjct: 397 MISQISGTFLSLFSNAYYDMLISSVSQEPAVSPRGWVIDSGATHHVTHNRDLYLNFRSLE 456
Query: 417 PVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDND 476
++LPN G + S + NVLY+ EFK NL+S
Sbjct: 457 NTFVRLPNDCTVKIAGIGFIQLSDAISLHNVLYIPEFKFNLIS----------------- 499
Query: 477 KCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQS-----SSSTTFLPQ 531
+ + M G G + LY L+ F++ NH + + S S ++ +
Sbjct: 500 -----ELTKELMIGRGSQVGNLYVLD-----FNENNHTVSLKGTTSMCPEFSVCSSVVVD 549
Query: 532 EALWHFRLGH--LSNDRLLRMQQHFPCIKVDSN-----SVCDICHYSRHKKLPFKLSMNK 584
WH RLGH S LL + K++ VC +CH S+ K L F+ N
Sbjct: 550 SVTWHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNM 609
Query: 585 ASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNI 644
S ++L+H D WGP S + + TWI L K KS+V FI +
Sbjct: 610 CSAAFDLVHIDTWGPFSVPT--------------NDATWIYLLKNKSDVLHVFPAFINMV 655
Query: 645 ENQFNCKVKTVRTDNGPEFLMPDFYSSKGIEHQTSCVETPQQNGRV 690
Q+ K+K+VR+DN E D +++ GI SC ETP+QN V
Sbjct: 656 HTQYQTKLKSVRSDNAHELKFTDLFAAHGIVAYHSCPETPEQNSVV 701
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301698|pir||C84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1501
Score = 528 bits (1361), Expect = e-148
Identities = 278/583 (47%), Positives = 373/583 (63%), Gaps = 17/583 (2%)
Query: 761 RKSTRVSQKPNHLSDYV---------------CNSSSDSTKQASSGILYPIKHYHSLNNI 805
RKS R + P L+DYV + S ST S L+P+ Y S
Sbjct: 918 RKSKRATHPPPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPGKS--LFPLTDYVSDAAF 975
Query: 806 SASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGS 865
S+SH+ + AITD EP +KEA Q W AM +E+ AL NKTW VD PP IGS
Sbjct: 976 SSSHRAYLAAITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGS 1035
Query: 866 KWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWH 925
+WV+K K+ SDGT+ERYKARLV +G QVEG D+ +TF+PV ++TTVR L+ + N W
Sbjct: 1036 QWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWE 1095
Query: 926 LHQLDVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFL 985
++Q+DV+NAFLHGDL E VYM +P G P++VC+L KSLYGLKQA R W++KL+ L
Sbjct: 1096 VYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSL 1155
Query: 986 LLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLG 1045
L G+ QS D+SLF + +L+YVDD+++ GN + + K L F +KDLG
Sbjct: 1156 LRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLG 1215
Query: 1046 KLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDD 1105
KLKYFLGIEV+ GI + QRKY LD++ D+G LG++P TPL+ + L D+ P D
Sbjct: 1216 KLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSD 1275
Query: 1106 ILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLF 1165
YRRLVG+LLYL TRP++++ V L+QF+ P H+D A RVV+YLKG+PGQG+L
Sbjct: 1276 PKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILL 1335
Query: 1166 RRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRAL 1225
D L L + D+DW CP +RRS S Y LG S ISW+ KKQ TV+ SS+EAEYRA+
Sbjct: 1336 NADPDLTLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAM 1395
Query: 1226 SFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREK 1285
S+A E++WL LLK+L ++ + L+CD+++AIHIA NPVFHERTKH+E DCH VR+
Sbjct: 1396 SYALKEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDA 1455
Query: 1286 LQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMIDLY 1328
++ I +++ QLAD FTK L F + KL + +L+
Sbjct: 1456 VRDGIITTQHVRTTEQLADVFTKALGRNQFLYLMSKLGVQNLH 1498
Score = 347 bits (890), Expect = 2e-93
Identities = 215/686 (31%), Positives = 340/686 (49%), Gaps = 56/686 (8%)
Query: 30 YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
Y + +SD P +V + L+ NY+ WA M AL AK K F++G+IP P DPN++ W
Sbjct: 32 YTLASSDNPGAVISSVELNGDNYNQWATEMLNALQAKRKTGFINGTIPRPPPNDPNYENW 91
Query: 90 NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
N ++ WI S+E + ++ F+ +A +W +LK+RFS G+ +RI +++ ++ S +Q
Sbjct: 92 TAVNSMIVGWIRTSIEPKVKATVTFISDAHLLWKDLKQRFSVGNKVRIHQIRAQLSSCRQ 151
Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLN 209
D ++V E++ L LWEE Y P VC C C C K + E + +F+ GL+
Sbjct: 152 DGQAVIEYYGRLSNLWEEYNIYKPVTVCTC-GLCRCGATSEPTKEREE-EKIHQFVLGLD 209
Query: 210 DS-FDLVRSQILLMNPLPTINKIFSMVMQHERQFKISIPVEDS----------------- 251
+S F + + ++ M+PLP++ +I+S V++ E++ S+ V +
Sbjct: 210 ESRFGGLCATLINMDPLPSLGEIYSRVIREEQRL-ASVHVREQKEEAVGFLARREQLDHH 268
Query: 252 TILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVN 311
+ + S+ +S+ G NS G+ +CS CGR GH C++ GFP + +N + +
Sbjct: 269 SRVDASSSRSEHTGGSRSNSIIKGRVTCSNCGRTGHEKKECWQIVGFPDWWSERNGGRGS 328
Query: 312 NS------SIEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQASSSKVN 365
N + + + + NS+ P F T+E L L++ + S S N
Sbjct: 329 NGRGRGGRGSNGGRGQGQVMAAHATSSNSSVFPEF--TEEHMRVLSQLVKEKSNSGSTSN 386
Query: 366 LSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNG 425
+ + G I+DSGAS H+ ++ + P+ P + +G
Sbjct: 387 ------------NNSDRLSGKTKLGDIILDSGASHHMTGTLSSLTNVVPVPPCPVGFADG 434
Query: 426 NMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSN 485
+ A A G + S + NVL+V L+SV KL C+ TF + CF+QD+S+
Sbjct: 435 SKAFALSVGVLTLSNTVSLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQDRSS 494
Query: 486 LKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSND 545
+ G GE G+Y+L + P + + S +ALWH RLGH S
Sbjct: 495 KTLIGSGEERGGVYYLT---------DVTPAKIHTANVDS-----DQALWHQRLGHPSFS 540
Query: 546 RLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSI 605
L + ++ CD+C ++ + F S+NK C+ LIH D+WGP +
Sbjct: 541 VLSSLPLFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLIHCDVWGPYRVPAS 600
Query: 606 HGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL- 664
G YF+T +DDYSR W L KSEV + + NF+ E QF VK VR+DNG EF+
Sbjct: 601 CGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMC 660
Query: 665 MPDFYSSKGIEHQTSCVETPQQNGRV 690
+ ++ GI HQTSCV TPQQNGRV
Sbjct: 661 LSSYFRENGIIHQTSCVGTPQQNGRV 686
>gb|AAL68641.1| polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1472
Score = 528 bits (1360), Expect = e-148
Identities = 282/619 (45%), Positives = 392/619 (62%), Gaps = 25/619 (4%)
Query: 723 LPLENQSETNKEPAMHIDNNTHIQDPT-----QIEHEPQQLNT----RKSTR--VSQKPN 771
LP Q E + + + D+ TH+Q + QIE ++ N RK R + P
Sbjct: 865 LPTTQQVEVDDQVS---DDLTHVQVSSESGGEQIEIREEESNLPIAIRKGMRSNAGKPPQ 921
Query: 772 HLSDYVCNSSSDSTKQASSGILYPIKHYHSLNNISASHQKFALAITDASEPISYKEASQQ 831
+ + S D I +Y S ++S++++ F ++ A P +KEA Q
Sbjct: 922 RYGFEIGDESGDEND---------IANYVSYTSLSSTYRAFVASLNSAIIPKDWKEAKQD 972
Query: 832 DCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGY 891
W +AM EL AL NKTW V P K + KWVY +K DG +ERYKARLVAKGY
Sbjct: 973 PRWHQAMLDELEALEKNKTWDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGY 1032
Query: 892 TQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQG 951
+Q GID+ +TF+PVAK++TVR +I+ A W LHQLDV NAFLHGDL E VYM +P G
Sbjct: 1033 SQTYGIDYDETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPG 1092
Query: 952 VHSPKPN-QVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTA 1010
+ + +V +L KSLYGLKQ+ R W+++ + GYKQ DH++F HS T
Sbjct: 1093 FATLQTKGKVLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQCNGDHTVFYHHSGDHITI 1152
Query: 1011 LLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYC 1070
L VYVDD+I+ GN +EI R+K L EF++KDLG+LKYFLGIE+A S GI + QRKY
Sbjct: 1153 LAVYVDDMIITGNDCSEITRLKQNLSKEFEVKDLGQLKYFLGIEIARSPRGIVLSQRKYA 1212
Query: 1071 LDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVV 1130
LDLL DTG+LG +P +TP+D + KL ++ P + Y+RLVG+L+YL TRPDI + V
Sbjct: 1213 LDLLSDTGMLGCRPASTPVDQNHKLCAESGNPVNKE-RYQRLVGRLIYLCHTRPDITYAV 1271
Query: 1131 QQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRS 1190
+S++++ P H D R+++YLKG+PG+GL F+++ L++ G+ DA WA CPD RRS
Sbjct: 1272 SMVSRYMHDPRSGHMDAVYRILRYLKGSPGKGLWFKKNGHLEVEGYCDAHWASCPDDRRS 1331
Query: 1191 TSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLP 1250
TSGYC F+G +L+SWR+KKQ V+RS++EAEYRA+S + EL WL LL +L + +
Sbjct: 1332 TSGYCVFVGGNLVSWRSKKQPVVSRSTAEAEYRAMSVSLSELLWLRNLLSELMLPVDTPM 1391
Query: 1251 VLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPL 1310
L+CDN+SAI IA NPV H+RTKH+E+D F++EKL + + +L + S Q+AD FTK L
Sbjct: 1392 KLWCDNKSAISIANNPVQHDRTKHVELDRFFIKEKLDEGVLELEFVMSGGQVADCFTKGL 1451
Query: 1311 PPKNFHSFLPKLNMIDLYN 1329
K +S K+ MID+Y+
Sbjct: 1452 GVKECNSSCDKMGMIDIYH 1470
Score = 278 bits (710), Expect = 1e-72
Identities = 204/655 (31%), Positives = 314/655 (47%), Gaps = 68/655 (10%)
Query: 51 NYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDP-NFKAWNRCNMLVHSWIMNSVEDSIA 109
NY SW+R L K +V G + P + +K W+ N LV +W++ S+ +IA
Sbjct: 56 NYLSWSRRALLILKTKGLEGYVTGEVKEPENTSSVEWKTWSTTNSLVVAWLLTSLIPAIA 115
Query: 110 QSIVFLENAIDVWNELKERFS-QGDFIRISELQCEIFSLKQDSRSVTEFFTALKVLWEEL 168
++ + +A ++W L + +S +G+ + + E Q +I +L+Q RSV E+ LK LW +L
Sbjct: 116 TTVETISSASEMWKTLTKLYSGEGNVMLMVEAQEKISALRQGERSVAEYVAELKSLWSDL 175
Query: 169 EAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNPLPTI 228
+ Y P + CI + K E R I FL GLN F+ R + LPT+
Sbjct: 176 DHYDPLGL----EHSDCIAKM---KKWVERRRVIEFLKGLNPEFEGRRDAMFHQTTLPTL 228
Query: 229 NKIFSMVMQHERQFKI---SIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKRSCSFCGRD 285
++ + + Q E + K+ + P S GK R C CG
Sbjct: 229 DEAIAAMAQEELKKKVLPSAAPCSPSPTYAIVQGKET--------------RECFNCGEM 274
Query: 286 GHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPSFGITKE 345
GH + C+ P YG + +R + G SN +G +
Sbjct: 275 GHLMRDCHAPR--KPTYGRG-----------RGVDRGGTRGGRGYAGRSNRGRGYGYRGD 321
Query: 346 QYEQLVTLLQSQQASSSKVNLSHVTN--HVTSGITRTSYTMNHSSFGTWIVDSGASDHIC 403
VTL + SS +V N H TSG ++ ++S +WI+DSGAS H+
Sbjct: 322 YKANAVTL----EEGSSGTTPDNVANFAHSTSGSFNQAFMSMNTSHSSWILDSGASRHVT 377
Query: 404 SSIKFFDSYAPIIPVH---IKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSV 460
F SY P H I+ +G K G V +P + +VLYV F +NL+S+
Sbjct: 378 GMSGEFTSYKPYSFAHKETIQTADGTSCQVKGEGIVQCTPSITLSSVLYVHSFPVNLISI 437
Query: 461 PKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALS 520
L + +C V+ D + C IQ++ K G+G +GL++L+ + ++ V AL
Sbjct: 438 SSLVDNMDCRVSLDRENCLIQERRTGKKLGIGIRRDGLWYLD------RRGTNEDVCALM 491
Query: 521 QSSSSTTFLPQEALWHFRLGHLSNDRLLRMQQHFPC--IKVDSNS-VCDICHYSRHKKLP 577
S+S + + L H RLGH+S + + +M FP KVD + +CD C Y +H +
Sbjct: 492 ASTSKE--VTEVLLLHCRLGHISFEIMSKM---FPVEFSKVDKHMLICDACEYGKHTRTS 546
Query: 578 FKLSMNKASHCYELIHFDIW-GPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKS 636
+ ++ + LIH D+W P+ S+ G KYF+T +D YSR TW+ L + K EV K
Sbjct: 547 YVSRGLRSILPFMLIHSDVWTSPVV--SMSGMKYFVTFIDCYSRMTWLYLMRHKDEVLKC 604
Query: 637 VQNFILNIENQFNCKVKTVRTDNGPEFLMPD---FYSSKGIEHQTSCVETPQQNG 688
QNF I+N FN +V+ +RTDNG E++ + F S +GI HQTSC +TP QNG
Sbjct: 605 FQNFYAYIKNHFNARVQFIRTDNGGEYMNSEFGHFLSLEGILHQTSCPDTPPQNG 659
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|7444418|pir||T00499 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1496
Score = 527 bits (1357), Expect = e-147
Identities = 273/571 (47%), Positives = 366/571 (63%), Gaps = 3/571 (0%)
Query: 759 NTRKSTRVSQKPNHLSDYVCNS---SSDSTKQASSGILYPIKHYHSLNNISASHQKFALA 815
NT + + H V S +S S S LYP+ + + + SA+H F A
Sbjct: 921 NTTSKKKTASHNIHSPSQVLPSGLPTSLSADSVSGKTLYPLSDFLTNSGYSANHIAFMAA 980
Query: 816 ITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKS 875
I D++EP +K+A W +AM+ E+ AL N TW D P K I SKWVYK+K+ S
Sbjct: 981 ILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNS 1040
Query: 876 DGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAF 935
DGT+ER+KARLV G Q EG+DF +TF+PVAK+TTVR ++A+A+ W +HQ+DV+NAF
Sbjct: 1041 DGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAF 1100
Query: 936 LHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSAS 995
LHGDL E VYM +P G P++VC+L KSLYGLKQA R W+ KL+ L G+ QS
Sbjct: 1101 LHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYE 1160
Query: 996 DHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEV 1055
D+SLF L + +LVYVDD+I+AGN++ IDR K+ L F +KDLGKLKYFLG+EV
Sbjct: 1161 DYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEV 1220
Query: 1056 AHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGK 1115
+ G + QRKY LD++K+TGLLG KP P+ + KL P + YRRLVG+
Sbjct: 1221 SRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGR 1280
Query: 1116 LLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLG 1175
+YLT TRPD+++ V LSQF+ AP + H++ A R+V+YLKG+P QG+ R DS L +
Sbjct: 1281 FIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINA 1340
Query: 1176 FTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWL 1235
+ D+D+ CP +RRS S Y +LG S ISW+ KKQ TV+ SS+EAEYRA+++ EL+WL
Sbjct: 1341 YCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWL 1400
Query: 1236 LYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLP 1295
LLKDL V + L CD+++AIHIA NPVFHERTKH+E DCH VR+ + +
Sbjct: 1401 KALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEH 1460
Query: 1296 IKSQSQLADFFTKPLPPKNFHSFLPKLNMID 1326
I ++ Q+AD TK LP F L L + D
Sbjct: 1461 IYTEDQVADLLTKSLPRPTFERLLSTLGVTD 1491
Score = 334 bits (856), Expect = 1e-89
Identities = 221/690 (32%), Positives = 326/690 (47%), Gaps = 81/690 (11%)
Query: 30 YYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDPNFKAW 89
Y ++ASD P ++ + VL +NY W+ ++ L AK K F+DGSIP P DP W
Sbjct: 22 YLINASDNPGALISSVVLKENNYAEWSEELQNFLRAKQKLGFIDGSIPKPAA-DPELSLW 80
Query: 90 NRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCEIFSLKQ 149
N ++ WI S++ +I ++ F+ A +W L+ RFS G+ +R + L+ EI + Q
Sbjct: 81 IAINSMIVGWIRTSIDPTIRSTVGFVSEASQLWENLRRRFSVGNGVRKTLLKDEIAACTQ 140
Query: 150 DSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLN 209
D + V ++ L LWEEL+ Y C C + + + E R +FL GL+
Sbjct: 141 DGQPVLAYYGRLIKLWEELQNYKSGRECKCE-------AASDIEKEREDDRVHKFLLGLD 193
Query: 210 DSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKIS-----IPVEDSTILVNSAGKSQGR 264
F +RS I + PLP + +++S V++ E+ S + E V S+ + R
Sbjct: 194 SRFSSIRSSITDIEPLPDLYQVYSRVVREEQNLNASRTKDVVKTEAIGFSVQSSTTPRFR 253
Query: 265 GRGNGNSNSNGKRSCSFCGRDGHTIDICYRKHGFPPNYGNKNFAKVNNSSIEQNEEREDL 324
+ C+ C R GH + C+ HG+P + +N N +
Sbjct: 254 DKST--------LFCTHCNRKGHEVTQCFLVHGYPDWWLEQN--PQENQPSTRGRGSNGR 303
Query: 325 DDSKSCKGNSNTEPSF-----------------GITKEQYEQLVTLLQSQQASSSKVNLS 367
S GN ++ P+ G +Q QL++LLQ+Q+ SSS LS
Sbjct: 304 GSSSGRGGNRSSAPTTRGRGRANNAQAAAPTVSGDGNDQIAQLISLLQAQRPSSSSERLS 363
Query: 368 HVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNM 427
T +T G+ +D+GAS H+ I P + P+G
Sbjct: 364 GNTC-LTDGV----------------IDTGASHHMTGDCSILVDVFDITPSPVTKPDGKA 406
Query: 428 AIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLK 487
+ A GT+ +VL+V +F L+SV KL + I F + CF+QD+
Sbjct: 407 SQATKCGTLLLHDSYKLHDVLFVPDFDCTLISVSKLLKQTSSIAIFTDTFCFLQDRFLRT 466
Query: 488 MTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRL 547
+ G GE EG+Y+ V+A +S+ F LWH RLGH S L
Sbjct: 467 LIGAGEEREGVYYFT------------GVLAPRVHKASSDFAISGDLWHRRLGHPSTSVL 514
Query: 548 L------RMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPIS 601
L R Q F K+DS CD C S+ + F +S NK C+ LIH D+WGP
Sbjct: 515 LSLPECNRSSQGFD--KIDS---CDTCFRSKQTREVFPISNNKTMECFSLIHGDVWGPYR 569
Query: 602 THSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGP 661
T S G YF+T +DDYSR W L +K+EVS+ ++NF E QF +VK RTDNG
Sbjct: 570 TPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGT 629
Query: 662 EFL-MPDFYSSKGIEHQTSCVETPQQNGRV 690
EF+ + ++ + GI HQTSCV+TPQQNGRV
Sbjct: 630 EFMCLTPYFQTHGILHQTSCVDTPQQNGRV 659
>gb|AAR24647.1| At2g23330 [Arabidopsis thaliana] gi|22655202|gb|AAM98191.1| unknown
protein [Arabidopsis thaliana]
Length = 776
Score = 527 bits (1357), Expect = e-147
Identities = 273/571 (47%), Positives = 366/571 (63%), Gaps = 3/571 (0%)
Query: 759 NTRKSTRVSQKPNHLSDYVCNS---SSDSTKQASSGILYPIKHYHSLNNISASHQKFALA 815
NT + + H V S +S S S LYP+ + + + SA+H F A
Sbjct: 201 NTTSKKKTASHNIHSPSQVLPSGLPTSLSADSVSGKTLYPLSDFLTNSGYSANHIAFMAA 260
Query: 816 ITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVYKIKHKS 875
I D++EP +K+A W +AM+ E+ AL N TW D P K I SKWVYK+K+ S
Sbjct: 261 ILDSNEPKHFKDAILIKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNS 320
Query: 876 DGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQLDVNNAF 935
DGT+ER+KARLV G Q EG+DF +TF+PVAK+TTVR ++A+A+ W +HQ+DV+NAF
Sbjct: 321 DGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAF 380
Query: 936 LHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQGYKQSAS 995
LHGDL E VYM +P G P++VC+L KSLYGLKQA R W+ KL+ L G+ QS
Sbjct: 381 LHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYE 440
Query: 996 DHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKYFLGIEV 1055
D+SLF L + +LVYVDD+I+AGN++ IDR K+ L F +KDLGKLKYFLG+EV
Sbjct: 441 DYSLFSLKNGDTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEV 500
Query: 1056 AHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSYRRLVGK 1115
+ G + QRKY LD++K+TGLLG KP P+ + KL P + YRRLVG+
Sbjct: 501 SRGPDGFCLSQRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGR 560
Query: 1116 LLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDSQLQLLG 1175
+YLT TRPD+++ V LSQF+ AP + H++ A R+V+YLKG+P QG+ R DS L +
Sbjct: 561 FIYLTITRPDLSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINA 620
Query: 1176 FTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFASCELQWL 1235
+ D+D+ CP +RRS S Y +LG S ISW+ KKQ TV+ SS+EAEYRA+++ EL+WL
Sbjct: 621 YCDSDYNACPLTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWL 680
Query: 1236 LYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQNIFKLLP 1295
LLKDL V + L CD+++AIHIA NPVFHERTKH+E DCH VR+ + +
Sbjct: 681 KALLKDLGVHHSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEH 740
Query: 1296 IKSQSQLADFFTKPLPPKNFHSFLPKLNMID 1326
I ++ Q+AD TK LP F L L + D
Sbjct: 741 IYTEDQVADLLTKSLPRPTFERLLSTLGVTD 771
>ref|XP_470422.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27573360|gb|AAO20078.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 514 bits (1323), Expect = e-143
Identities = 260/535 (48%), Positives = 360/535 (66%), Gaps = 2/535 (0%)
Query: 796 IKHYHSLNNISASHQKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVD 855
I +Y S +++S++++ F ++ P ++EA Q W +AM EL AL NKTW V
Sbjct: 764 ISNYVSYDSLSSTYKAFIASLDSVQIPKDWREAKQDPRWHQAMLDELEALEKNKTWDLVP 823
Query: 856 TPPNIKPIGSKWVYKIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRIL 915
P K + KWVY +K DG +ERYKARLVAKGY+Q GID+ +TF+PVAK++TVR L
Sbjct: 824 FPKGKKIVNCKWVYTVKQNPDGKVERYKARLVAKGYSQTYGIDYDETFAPVAKMSTVRTL 883
Query: 916 IALASINSWHLHQLDVNNAFLHGDLSENVYMSVPQG-VHSPKPNQVCKLLKSLYGLKQAS 974
I+ A+ W LHQLDV NAFLH DL E VYM VP G S +V +L KSLYGLKQ+
Sbjct: 884 ISCAANFDWPLHQLDVKNAFLHRDLQEEVYMDVPPGFATSQTKGKVLRLKKSLYGLKQSP 943
Query: 975 RKWYEKLTGFLLLQGYKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAV 1034
R W+++ + YKQ DH++F HS T L VYVDD+I+ GN EI R+K
Sbjct: 944 RAWFDRFRRAMCAMDYKQCNGDHTVFYHHSGDHITILAVYVDDMIITGNDCLEITRLKRN 1003
Query: 1035 LDVEFKIKDLGKLKYFLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIK 1094
L EF++KDLG+L+YFLGIE+A S GI I QRKY LDLL +TG+LG PV+TP+D + K
Sbjct: 1004 LSKEFEVKDLGQLRYFLGIEIARSPRGIVISQRKYVLDLLSETGMLGCCPVSTPIDQNHK 1063
Query: 1095 LHQDNSPPHDDILSYRRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKY 1154
L ++ P + Y+RLVG+L+YL TRPDI + V +S++++ P +H + R+++Y
Sbjct: 1064 LCAESGDPVNRE-RYQRLVGRLIYLCHTRPDITYAVSMVSRYMHDPRSSHMEAVYRILRY 1122
Query: 1155 LKGTPGQGLLFRRDSQLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVA 1214
LKG+PG+GL F+++ L++ G+ DADWA C D RRSTSGYC ++G +L+SWR+KKQ V+
Sbjct: 1123 LKGSPGKGLWFKKNGHLKIEGYCDADWASCLDDRRSTSGYCVYVGGNLVSWRSKKQSVVS 1182
Query: 1215 RSSSEAEYRALSFASCELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKH 1274
RS++EAEYRA++ + EL WL LL +L++ N L CDN+SAI+IA NPV H+RTKH
Sbjct: 1183 RSTAEAEYRAMAASLSELLWLRNLLVELKILGNTPMKLLCDNKSAINIANNPVQHDRTKH 1242
Query: 1275 LEIDCHFVREKLQQNIFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMIDLYN 1329
+EID F++EKL + + +L + S Q+AD TK L K + K+ MID+Y+
Sbjct: 1243 VEIDRFFIKEKLDEGVLELGFVTSGGQVADCLTKGLGVKECNCSCDKMGMIDIYH 1297
Score = 123 bits (308), Expect = 5e-26
Identities = 116/463 (25%), Positives = 189/463 (40%), Gaps = 104/463 (22%)
Query: 51 NYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDP-NFKAWNRCNMLVHSWIMNSVEDSIA 109
NY SW+R L K +V G I P + +K W+ N LV +W++ S+ +IA
Sbjct: 56 NYLSWSRRALLILKTKGLEGYVTGEIKEPENISSVEWKTWSTTNSLVVAWLLTSLIPAIA 115
Query: 110 QSIVFLENAIDVWNELKERFS-QGDFIRISELQCEIFSLKQDSRSVTEFFTALKVLWEEL 168
++ + +A ++W L +S +G+ + + E Q +I L+Q RSV E+ LK LW +L
Sbjct: 116 TTVETISSASEMWKTLTNLYSGEGNVMLMVEAQEKISVLRQGERSVAEYVAELKHLWSDL 175
Query: 169 EAYLPT----PVCACPHRCMCITGVMNAKHQHEITRSIRFLTGLNDSFDLVRSQILLMNP 224
+ Y P P C + + E R I FL GLN F+ R +
Sbjct: 176 DHYDPLGLEHPDC-----------IAKMRKWIERRRVIEFLKGLNSEFEGRRDAMFHQTT 224
Query: 225 LPTINKIFSMVMQHERQFKI---SIPVEDSTILVNSAGKSQGRGRGNGNSNSNGKRSCSF 281
LP++++ + + Q E + K+ + P S V + K R C
Sbjct: 225 LPSLDEAIAAMAQEELKKKVLPSATPSSPSPTYVVAQSKE--------------TRECFN 270
Query: 282 CGRDGHTIDICYRKHGFP--PNYGNKNFAKVNNSSIEQNEEREDLDDSKSCKGNSNTEPS 339
CG GH I R + P P+YG F +R + G N
Sbjct: 271 CGEMGHLI----RDYRAPRKPSYGRGRFG-----------DRGGARGGRGYAGRGNRGRG 315
Query: 340 FGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGAS 399
+ + +VTL +S + S+ V+++++ H +SG + ++ +SS WI+DSGAS
Sbjct: 316 YEYRSDHRANVVTLEES-CSGSTNVDVANLV-HSSSGNSNQAFMSINSSHSNWILDSGAS 373
Query: 400 DHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLS 459
H+ TVN L+S
Sbjct: 374 RHV--------------------------------TVN-------------------LVS 382
Query: 460 VPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLN 502
+ L NC V+ D + C IQ++ K G+G +GL++L+
Sbjct: 383 ISSLVDHMNCRVSLDRENCLIQERETGKKLGIGVRRDGLWYLD 425
Score = 46.2 bits (108), Expect = 0.007
Identities = 22/41 (53%), Positives = 28/41 (67%), Gaps = 3/41 (7%)
Query: 651 KVKTVRTDNGPEFL---MPDFYSSKGIEHQTSCVETPQQNG 688
+ K +RTDNG E++ F SS+GI HQTSC +TP QNG
Sbjct: 445 EAKFIRTDNGGEYINNEFSSFLSSEGILHQTSCPDTPPQNG 485
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 513 bits (1320), Expect = e-143
Identities = 286/639 (44%), Positives = 385/639 (59%), Gaps = 33/639 (5%)
Query: 709 PIIPATEQTSSNSELPLENQSETNKEPAMHIDNNTHIQDPTQ-----IEHEPQQLNTRKS 763
P+ P+T T + + P + S T+ +T++ P Q IE+ P R+
Sbjct: 864 PLSPSTSVTPTQT--PTNSSSSTSP--------STNVSPPQQDTTPIIENTPP----RQG 909
Query: 764 TRVSQKPNHLSDYVCNSSS----------DSTKQASSGIL----YPIKHYHSLNNISASH 809
R Q+ L DY+ ++S ST Q+SS I YP+ Y SA H
Sbjct: 910 KRQVQQLARLKDYILYNASCTPNTPHVLSPSTSQSSSSIQGNSQYPLTDYIFDECFSAGH 969
Query: 810 QKFALAITDASEPISYKEASQQDCWVKAMNSELSALNHNKTWIFVDTPPNIKPIGSKWVY 869
+ F AIT EP +KEA + W AM E+ AL NKTW VD P IGS+WVY
Sbjct: 970 KVFLAAITANDEPKHFKEAVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVY 1029
Query: 870 KIKHKSDGTIERYKARLVAKGYTQVEGIDFFDTFSPVAKITTVRILIALASINSWHLHQL 929
K K +DGT+ERYKARLV +G Q+EG D+ +TF+PV K+TTVR L+ L + N W ++Q+
Sbjct: 1030 KTKFNADGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQWEVYQM 1089
Query: 930 DVNNAFLHGDLSENVYMSVPQGVHSPKPNQVCKLLKSLYGLKQASRKWYEKLTGFLLLQG 989
DV+NAFLHGDL E VYM +P G P++VC+L KSLYGLKQA R W++KL+ L G
Sbjct: 1090 DVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFG 1149
Query: 990 YKQSASDHSLFILHSDTCFTALLVYVDDVILAGNSMTEIDRIKAVLDVEFKIKDLGKLKY 1049
+ Q D+S F +LVYVDD+I+ GN + + K L F +KDLGKLKY
Sbjct: 1150 FIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKY 1209
Query: 1050 FLGIEVAHSKLGISICQRKYCLDLLKDTGLLGAKPVTTPLDPSIKLHQDNSPPHDDILSY 1109
FLGIEV+ GI + QRKY LD++ D+G LGA+P TPL+ + L D+ P D +
Sbjct: 1210 FLGIEVSRGPDGIFLSQRKYALDIISDSGTLGARPAYTPLEQNHHLASDDGPLLQDPKPF 1269
Query: 1110 RRLVGKLLYLTTTRPDIAFVVQQLSQFLNAPTITHYDTACRVVKYLKGTPGQGLLFRRDS 1169
RRLVG+LLYL TRP++++ V LSQF+ AP H + A R+V+YLKG+PGQG+L +
Sbjct: 1270 RRLVGRLLYLLHTRPELSYSVHVLSQFMQAPREAHLEAAMRIVRYLKGSPGQGILLSSNK 1329
Query: 1170 QLQLLGFTDADWAGCPDSRRSTSGYCFFLGSSLISWRAKKQHTVARSSSEAEYRALSFAS 1229
L L + D+D+ CP +RRS S Y LG S ISW+ KKQ TV+ SS+EAEYRA+S A
Sbjct: 1330 DLTLEVYCDSDFQSCPLTRRSLSAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSVAL 1389
Query: 1230 CELQWLLYLLKDLRVKCNKLPVLFCDNQSAIHIAGNPVFHERTKHLEIDCHFVREKLQQN 1289
E++WL LLK+L + LFCD+++AI IA NPVFHERTKH+E DCH VR+ ++
Sbjct: 1390 KEIKWLNKLLKELGITLAAPTRLFCDSKAAISIAANPVFHERTKHIERDCHSVRDAVRDG 1449
Query: 1290 IFKLLPIKSQSQLADFFTKPLPPKNFHSFLPKLNMIDLY 1328
I +++ QLAD FTK L F + KL + +L+
Sbjct: 1450 IITTHHVRTSEQLADIFTKALGRNQFIYLMSKLGIQNLH 1488
Score = 319 bits (818), Expect = 3e-85
Identities = 204/689 (29%), Positives = 334/689 (47%), Gaps = 54/689 (7%)
Query: 20 QDPSQQPGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVP 79
Q P + Y + +SD P ++ + +L+ NY+ W+ M AL AK K F++GSI P
Sbjct: 17 QQPDVTKVSPYTLASSDNPGAMISSVMLTGDNYNEWSTEMLNALQAKRKTGFINGSISKP 76
Query: 80 TDFDPNFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISE 139
+P+++ W N ++ WI S+E + ++ F+ +A +W+ELK+RFS G+ +R+ +
Sbjct: 77 PLDNPDYENWQAVNSMIVGWIRASIEPKVKSTVTFISDAHQLWSELKQRFSVGNKVRVHQ 136
Query: 140 LQCEIFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAKHQHEIT 199
++ ++ + +QD + V +++ L LWEE + Y P VC C C C + +K + E
Sbjct: 137 IKAQLAACRQDGQPVIDYYGRLCKLWEEFQIYKPITVCKC-GLCTCGATLEPSKEREE-E 194
Query: 200 RSIRFLTGLNDS-FDLVRSQILLMNPLPTINKIFSMVMQHERQF-KISIPVEDSTILVNS 257
+ +F+ GL+DS F + + ++ M+P P++ +I+S V++ E++ + I + + +
Sbjct: 195 KIHQFVLGLDDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQSAIGFL 254
Query: 258 AGKSQGRGRGNGNSNSNGKRS----CSFCGRDGHTIDICYRKHGFPP---------NYGN 304
+S+ G +S+ R CS CGR GH C++ GFP G+
Sbjct: 255 TRQSEVTADGRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFPDWWTERTNGGGRGS 314
Query: 305 KNFAKVNNSSIEQN--EEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQASSS 362
+ + SS N R + + + N ++ P F T +Q + ++Q
Sbjct: 315 SSRGRGGRSSGSNNSGRGRGQVTAAHATTSNLSSFPEF--TPDQLRVITQMIQ------- 365
Query: 363 KVNLSHVTNHVTSGITRTSYTMNHSSFGTWIVDSGASDHICSSIKFFDSYAPIIPVHIKL 422
N ++ T+ SG G I+D+GAS H+ + + I +
Sbjct: 366 --NKNNGTSDKLSG---------KMKLGDVILDTGASHHMTGQLSLLTNIVTIPSCSVGF 414
Query: 423 PNGNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQD 482
+ A GT S + NVLYV +L+SV KL C+ F + C +QD
Sbjct: 415 ADDRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQD 474
Query: 483 KSNLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHL 542
+ + + G GE +G+Y+L A + + ALWH RLGH
Sbjct: 475 RFSRTLIGTGEERDGVYYL--------------TDAATTTVHKVDVTTDHALWHQRLGHP 520
Query: 543 SNDRLLRMQQHFPCIKVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPIST 602
S L + S+ CD+C ++ + F S NK++ C+ LIH D+WGP
Sbjct: 521 SFSVLSSLPLFSGSSCSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRV 580
Query: 603 HSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPE 662
S G YF+T +DD+SR W L KSEV + NF+ E QF VK +R+DNG E
Sbjct: 581 PSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTE 640
Query: 663 FL-MPDFYSSKGIEHQTSCVETPQQNGRV 690
F+ + ++ +GI HQTSCV TPQQNGRV
Sbjct: 641 FMCLSSYFKEQGIVHQTSCVGTPQQNGRV 669
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,336,689,669
Number of Sequences: 2540612
Number of extensions: 101472732
Number of successful extensions: 288861
Number of sequences better than 10.0: 1971
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 279705
Number of HSP's gapped (non-prelim): 4521
length of query: 1336
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1196
effective length of database: 507,674,714
effective search space: 607178957944
effective search space used: 607178957944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)
Medicago: description of AC148395.6