BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148359.6 + phase: 0 /pseudo
         (2066 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_219276.3| PREDICTED: similar to ATP-binding cassette tran...    39  1.9
emb|CAA77921.1| hypothetical protein [Euglena gracilis] gi|26738...    38  4.2
emb|CAC69147.1| RoaA protein [Euglena gracilis]                        38  4.2

>ref|XP_219276.3| PREDICTED: similar to ATP-binding cassette transporter sub-family A
            member 15 [Rattus norvegicus]
          Length = 752

 Score = 38.9 bits (89), Expect = 1.9
 Identities = 26/90 (28%), Positives = 47/90 (51%), Gaps = 10/90 (11%)

Query: 1972 VLSVLFLFHFTFGQILFFIQILFFLHFGPSIEVPKLHFCPNFFFYFISSFFNFAV*SSS- 2030
            VL +L +  F +G + ++I+ +F   +G    VPK    P  FF   S +F  +      
Sbjct: 439  VLGMLLVDAFIYGLVAWYIEAVFPGEYG----VPK----PWNFFLMHSYWFGESRQQKPE 490

Query: 2031 -SYFCRKVQSSFFQVQGRAISIQIQVSHFH 2059
             + FC++V+S +F+V+   ++  IQ+ H H
Sbjct: 491  ITQFCKRVESKYFEVEPTDLTAGIQIKHLH 520


>emb|CAA77921.1| hypothetical protein [Euglena gracilis] gi|2673852|emb|CAA50104.1|
            RoaA protein [Euglena gracilis]
            gi|11467010|ref|NP_041917.1| orf516 [Euglena gracilis]
            gi|419731|pir||S34525 hypothetical protein 516 (rps3 3'
            region) - Euglena gracilis chloroplast
            gi|267478|sp|P30397|ROAA_EUGGR Ribosomal
            operon-associated A protein (RoaA)
          Length = 516

 Score = 37.7 bits (86), Expect = 4.2
 Identities = 23/78 (29%), Positives = 39/78 (49%), Gaps = 12/78 (15%)

Query: 1976 LFLFHFTFGQILFFIQILFFLHFGPSIEVPKLHFCPNFFFYFISSFFNFAV*SSSSYFCR 2035
            L +F+F F  + FF Q  FF+    S +V  L +   F+F+F   +          + C+
Sbjct: 212  LIIFNFIFNGLNFFFQENFFI----SYKVYYLFYIDKFYFFFKFPY--------DFFICK 259

Query: 2036 KVQSSFFQVQGRAISIQI 2053
            K+  SFF ++G  ++I I
Sbjct: 260  KIIISFFSLRGIILNINI 277


>emb|CAC69147.1| RoaA protein [Euglena gracilis]
          Length = 514

 Score = 37.7 bits (86), Expect = 4.2
 Identities = 23/78 (29%), Positives = 39/78 (49%), Gaps = 12/78 (15%)

Query: 1976 LFLFHFTFGQILFFIQILFFLHFGPSIEVPKLHFCPNFFFYFISSFFNFAV*SSSSYFCR 2035
            L +F+F F  + FF Q  FF+    S +V  L +   F+F+F   +          + C+
Sbjct: 210  LIIFNFIFNGLNFFFQENFFI----SYKVYYLFYIDKFYFFFKFPY--------DFFICK 257

Query: 2036 KVQSSFFQVQGRAISIQI 2053
            K+  SFF ++G  ++I I
Sbjct: 258  KIIISFFSLRGIILNINI 275


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.364    0.161    0.615 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,727,281,429
Number of Sequences: 2540612
Number of extensions: 93856460
Number of successful extensions: 432754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 432750
Number of HSP's gapped (non-prelim): 5
length of query: 2066
length of database: 863,360,394
effective HSP length: 144
effective length of query: 1922
effective length of database: 497,512,266
effective search space: 956218575252
effective search space used: 956218575252
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 83 (36.6 bits)