BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148291.6 - phase: 0
(1161 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_471020.1| OSJNBb0060M15.10 [Oryza sativa (japonica cultiv... 806 0.0
gb|AAF24529.1| F7F22.15 [Arabidopsis thaliana] 694 0.0
gb|AAF24531.1| F7F22.17 [Arabidopsis thaliana] 631 e-179
dbj|BAB02630.1| retroelement pol polyprotein-like [Arabidopsis t... 621 e-176
emb|CAB81136.1| putative athila transposon protein [Arabidopsis ... 541 e-152
gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana] 529 e-148
emb|CAD39877.2| OSJNBb0058J09.16 [Oryza sativa (japonica cultiva... 528 e-148
gb|AAR00600.1| putative reverse transcriptase [Oryza sativa (jap... 527 e-148
gb|AAD23707.1| putative retroelement pol polyprotein [Arabidopsi... 525 e-147
dbj|BAB02143.1| retroelement pol polyprotein-like [Arabidopsis t... 516 e-144
gb|AAD19780.2| hypothetical protein [Arabidopsis thaliana] 467 e-130
pir||D84513 probable retroelement pol polyprotein [imported] - A... 467 e-129
gb|AAM15254.1| putative retroelement pol polyprotein [Arabidopsi... 446 e-123
emb|CAD40178.2| OSJNBa0061A09.17 [Oryza sativa (japonica cultiva... 444 e-122
gb|AAF63114.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 409 e-112
gb|AAM94940.1| conserved hypothetical protein [Arabidopsis thali... 393 e-107
gb|AAT81692.1| putative integrase [Oryza sativa (japonica cultiv... 343 2e-92
gb|AAV43951.1| putative polyprotein [Oryza sativa (japonica cult... 342 6e-92
gb|AAV43847.1| putative polyprotein [Oryza sativa (japonica cult... 342 6e-92
ref|XP_475106.1| unknown protein [Oryza sativa (japonica cultiva... 332 3e-89
>ref|XP_471020.1| OSJNBb0060M15.10 [Oryza sativa (japonica cultivar-group)]
gi|38345284|emb|CAE03198.2| OSJNBb0060M15.10 [Oryza
sativa (japonica cultivar-group)]
gi|38345220|emb|CAE01641.2| OSJNBb0021I10.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1028
Score = 806 bits (2083), Expect = 0.0
Identities = 426/846 (50%), Positives = 548/846 (64%), Gaps = 87/846 (10%)
Query: 349 ELKELPSNLKYVFLSKDTSKPAIISSTLTLLEEEKLMRVLRENQGALGWKISDLKGISPA 408
ELK LP L+Y FL D P IIS L+ E + L+ VL +++ LG+ + DL+GI+PA
Sbjct: 201 ELKPLPPGLRYAFLHNDREAPVIISDKLSEDETQHLLTVLEKHRSVLGYSLQDLRGINPA 260
Query: 409 YCMHRIHMEAEYKPVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPK 468
C HRI ++ E P +PQRRLN M++VVKKEVLKLL+AG+IYP+ S WVSPV VV K
Sbjct: 261 LCTHRIPIDPENTPSREPQRRLNNAMRQVVKKEVLKLLHAGIIYPVPYSEWVSPVQVVLK 320
Query: 469 KGGMTVVANDKNELIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYC 528
KGGMTVVAN +NELIP TVTGWRMCIDYR+LN AT+KDHFPLPF+D+M+ERLA +F+C
Sbjct: 321 KGGMTVVANAQNELIPQLTVTGWRMCIDYRKLNKATKKDHFPLPFIDEMLERLANHSFFC 380
Query: 529 FLDGYSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEK 588
FLDGYS Y+QI + PEDQ KT FTCP+G +AYRRM FGLC APA+FQR MLSIFSDMIE
Sbjct: 381 FLDGYSGYHQIPIQPEDQSKTTFTCPYGTYAYRRMSFGLCNAPASFQRYMLSIFSDMIED 440
Query: 589 NIEVFMDDFSAF-------------VLGQRKNKFFHAIY----------------YASKV 619
+EVFMDDFS + VL + + K A + S
Sbjct: 441 IMEVFMDDFSVYGKTFGQCLQNLDKVLQRCQEKDLDAPFEFDGACLKSFEILKKALVSAP 500
Query: 620 LNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHAALKYLLTKGDSKPRLLRWI 679
+ + V K V+F ++KFRSYL+G+KVI++TDHAALKYLLTK D+K RLLRWI
Sbjct: 501 IIQPPVELCDYRKRAATVVFDIDKFRSYLVGAKVIIYTDHAALKYLLTKKDAKQRLLRWI 560
Query: 680 LLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMAEF-PDEKLFAIGE-RPWFA 737
LLLQEFDLEI+DKKGVEN VADHLSRL ++T + + +F D+ L + + PW+A
Sbjct: 561 LLLQEFDLEIKDKKGVENSVADHLSRL---QITDMQEQPINDFLRDDMLMTVRDSNPWYA 617
Query: 738 DMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTDGLMRRCVAGEEAHSIMW 797
++ N+ +P +QRK +++ H +WD+PYL++V +DGL+RRCV + I+
Sbjct: 618 NIVNYMVSKYIPPG--ENQRKLKYENRRH-IWDEPYLYRVCSDGLLRRCVPTNKGLRIIE 674
Query: 798 HCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTG 857
C +S YG H+ RT AK+ QSGF+WPT+++D +FV RC CQR G I+ R+ MPLT
Sbjct: 675 RCLASPYGSHYGAFRTQAKIWQSGFFWPTMYEDSTEFVRRCTSCQRQGGITARDAMPLTY 734
Query: 858 IIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIF 917
++ E FD WGIDFMGPFP S + +ILV VDYV+K V
Sbjct: 735 NLQGEIFDVWGIDFMGPFPKSRNCEYILVAVDYVSKMV---------------------- 772
Query: 918 TRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEK 977
ISDGG HF + ++L++ +H VATPYHPQTS Q E SN+Q+K IL+
Sbjct: 773 ---------ISDGGSHFIDKTFRDLLREMRAKHNVATPYHPQTSGQAETSNKQIKNILQN 823
Query: 978 TIASNRKDWSKKLDDALWAYR-----------------TAFKTHLGFSPYQLVYGKACHL 1020
+ W +L DALWAYR TA+KT +G SPYQ+VYGK+C L
Sbjct: 824 MVNKMGTGWKDRLSDALWAYRTAYKTPIGMSPYQIVYETAYKTPIGMSPYQIVYGKSCRL 883
Query: 1021 PVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKNLV 1080
PVELEH+AYWAI+ N D AG+ R +++ ELEE R +AY NA IYK RTKR+H+K +
Sbjct: 884 PVELEHRAYWAIRNWNMDFEGAGEWRKMQIAELEEWREKAYHNAKIYKERTKRWHEKRIK 943
Query: 1081 SRDINSGQLVLLYNSRLKLF-PGKLKSKWSGPFLVKSVLPHGAVELMTPEGDRSFKVNGQ 1139
+ G VL++NSR+KLF GKL+SKW GPF V HGA+ L G+ FKVNGQ
Sbjct: 944 IKKFKPGDKVLMFNSRVKLFGHGKLRSKWEGPFDVIDTSSHGAITLRDDSGN-IFKVNGQ 1002
Query: 1140 RVKPYL 1145
R+K +L
Sbjct: 1003 RLKIFL 1008
>gb|AAF24529.1| F7F22.15 [Arabidopsis thaliana]
Length = 1862
Score = 694 bits (1792), Expect = 0.0
Identities = 335/580 (57%), Positives = 425/580 (72%), Gaps = 25/580 (4%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQ+ +K H IYYAS+ L++ Q YATTEKELLAV+FA EKFRSYL+GSKV V+TDHA
Sbjct: 1286 VLGQKIDKKLHVIYYASRTLDDAQGRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHA 1345
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMA 720
AL++L K D+KPRLLRWILLLQEFD+EI DKKG+EN ADHLSR+ +E I
Sbjct: 1346 ALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLSRMRIEEPL----LIDD 1401
Query: 721 EFPDEKLFAI-------------------GERPWFADMANFKAGNIVPDDFEYHQRKKFF 761
P+E+L + GE PW+AD N+ A + P + ++RKKFF
Sbjct: 1402 SMPEEQLMVVEFFGKSYSGKEFHQLNAVEGESPWYADHVNYLACGVEPPNLTSYERKKFF 1461
Query: 762 KDANHYVWDDPYLFKVSTDGLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSG 821
+D +HY WD+PYL+ + D + RRCV+ +E I+ HCH SAYGGH + +T +K+LQ+G
Sbjct: 1462 RDIHHYYWDEPYLYTLCKDKIYRRCVSEDEVEGILLHCHGSAYGGHFATFKTVSKILQAG 1521
Query: 822 FWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSF 881
FWWPT+FKD +FV++CD CQR G+IS+RNEMP I+EVE FD WGIDFMGPFPSSY
Sbjct: 1522 FWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVEIFDVWGIDFMGPFPSSYGN 1581
Query: 882 LHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLEN 941
+ILV VDYV+KWVEAI NDAK V+ + IF RFG PRV+ISDGGKHF N + EN
Sbjct: 1582 KYILVAVDYVSKWVEAIASPTNDAKVVLKLFKTIIFPRFGVPRVVISDGGKHFINKVFEN 1641
Query: 942 VLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAF 1001
+LKK+ ++HKVATPY+PQTS QVE+SNR++K ILEKT+ RKDWS KLDDALWAYRT F
Sbjct: 1642 LLKKHGVKHKVATPYNPQTSGQVEISNREIKTILEKTVGITRKDWSAKLDDALWAYRTTF 1701
Query: 1002 KTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAY 1061
KT +G +P+ L+YGK+CHLPVELE+KA WA+K LNFD A +KRL++L++L+E+RL AY
Sbjct: 1702 KTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLSDLDEIRLEAY 1761
Query: 1062 ENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLPHG 1121
E++ IYK RTK +HDK ++++D G VLL+NSRLKLFPGKLKS+WSGPF + V P+G
Sbjct: 1762 ESSKIYKERTKLFHDKKIITKDFQVGDQVLLFNSRLKLFPGKLKSRWSGPFCITEVRPYG 1821
Query: 1122 AVELMTPEGDRSFKVNGQRVKPYLGGDLPKERVGLVLKDL 1161
AV L GD F VNGQR+K YL + E + L++L
Sbjct: 1822 AVTLTGKSGD--FTVNGQRLKKYLADQILPEVTSVHLQEL 1859
Score = 497 bits (1280), Expect = e-139
Identities = 260/570 (45%), Positives = 372/570 (64%), Gaps = 39/570 (6%)
Query: 69 QLQVNIPFGEALDQMPVYAKFMKEMLTGRRKPKDDENISLSENCSAILQRKL-PPKLKDP 127
++++ IP +AL +P KF+K+++ R + + LS CSAI+Q+K+ P KL DP
Sbjct: 567 KVELRIPLVDALALIPDSHKFLKDLIVERIQEVQGM-VVLSHECSAIIQKKIIPKKLSDP 625
Query: 128 GAFTIPCSIGPIDIGRALCDLGASINLMPLSMMKKIGGGEPKPTRMTLTLADRSISYPFG 187
G+FT+PCS+GP+ R LCDLGAS++LMPLS+ K++G + K ++L LADRS+ P G
Sbjct: 626 GSFTLPCSLGPLAFNRCLCDLGASVSLMPLSVAKRLGFTQYKSCNISLILADRSVRIPHG 685
Query: 188 VLEDVLVKVNDLIFPGDFVILDMAEDEDMPLILGRPFLATGRALIDVEMGQLMLRFHNE- 246
+LE++ +++ + P DFV+L+M E+ PLILGRPFLAT A+IDV+ G++ L +
Sbjct: 686 LLENLPIRIGAVEIPTDFVVLEMDEEPKDPLILGRPFLATAGAMIDVKKGKIDLNLGKDF 745
Query: 247 QVVLNIFEAMKHRAENPKCYRIDVIDEIVEDDSRAPQPTQPLERTIVNS-------LESC 299
++ ++ +AMK + + I+ +D++ ++ L + S LE+
Sbjct: 746 RMTFDVKDAMKKPTIEGQLFWIEEMDQLADELLEELAEEDHLNSALTKSGEDGFLHLETL 805
Query: 300 DLDEDLEVKECIKQLEASKQELGPVKIEEILGE-------------ISKGPQSSRKEEEK 346
+ L+ + +++ E ++ GP ++ E S + +E +
Sbjct: 806 GYQKLLDSHKAMEESEPFEELNGPATEVMVMSEEGSTRVQPALSRTYSSNHSTLSTDEPR 865
Query: 347 NP----------------ELKELPSNLKYVFLSKDTSKPAIISSTLTLLEEEKLMRVLRE 390
P +LK LP L+Y FL +++ P II++ L E L+ LR+
Sbjct: 866 EPIISTSDDWSELKAPKVDLKPLPKGLRYAFLGPNSTYPVIINAELNSDEVNLLLSELRK 925
Query: 391 NQGALGWKISDLKGISPAYCMHRIHMEAEYKPVVQPQRRLNPTMKEVVKKEVLKLLNAGM 450
+ A+G+ +SD+KGISP+ C HRIH+E E ++P RRLNP +KEVVKKE+LKLL+AG+
Sbjct: 926 YRRAIGYSLSDIKGISPSLCNHRIHLENESYSSIEPHRRLNPNLKEVVKKEILKLLDAGV 985
Query: 451 IYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMCIDYRRLNSATRKDHFP 510
IYPISDS+WVSPVH VPKK GM VV N+K+ELIPTRT+TG RMCIDYR+LN+A+RKDHFP
Sbjct: 986 IYPISDSTWVSPVHCVPKKDGMIVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFP 1045
Query: 511 LPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGA 570
LPF+DQM+ERLA +YCFLDGYS + QI + P DQEKT FTCP+G FAY+RMPFGLC A
Sbjct: 1046 LPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNA 1105
Query: 571 PATFQRCMLSIFSDMIEKNIEVFMDDFSAF 600
PATFQRCM SIFSD+I++ +EVFMDDFS +
Sbjct: 1106 PATFQRCMTSIFSDLIKEMVEVFMDDFSVY 1135
>gb|AAF24531.1| F7F22.17 [Arabidopsis thaliana]
Length = 1799
Score = 631 bits (1628), Expect = e-179
Identities = 318/561 (56%), Positives = 401/561 (70%), Gaps = 36/561 (6%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQ+ +K H IYYAS+ L++ Q YATTEKELL V+FA EKFRSYL+GSKV V+TDHA
Sbjct: 1272 VLGQKIDKKLHVIYYASRTLDDAQGRYATTEKELLVVVFAFEKFRSYLVGSKVTVYTDHA 1331
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMA 720
AL++L K D+KPRLLRWILLLQEFD+EI DKKG+EN ADHLSR+ +E I
Sbjct: 1332 ALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLSRMRIEEPL----LIDD 1387
Query: 721 EFPDEKLFAIGERPWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTD 780
P+E+L + +F + K E+HQ N + P+
Sbjct: 1388 SMPEEQLMVV---EFFGKSYSGK---------EFHQ-------LNAVEGESPW------- 1421
Query: 781 GLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDK 840
RCV+ +E I+ HCH SAYGGH + +T +K+LQ+GFWWPT+FKD +FV++CD
Sbjct: 1422 ----RCVSEDEVEGILLHCHGSAYGGHFATFKTVSKILQAGFWWPTMFKDAQEFVSKCDS 1477
Query: 841 CQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPC 900
CQR G+IS+RNEMP I+EVE FD WGIDFMGPFPSSY +ILV VDYV+KWVEAI
Sbjct: 1478 CQRKGNISRRNEMPQNPILEVEIFDVWGIDFMGPFPSSYGNKYILVAVDYVSKWVEAIAS 1537
Query: 901 VANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQT 960
NDAK V+ + IF RFG PRV+ISDGGKHF N + EN+LKK+ ++HKVATPY+PQT
Sbjct: 1538 PTNDAKVVLKLFKTIIFPRFGVPRVVISDGGKHFINKVFENLLKKHGVKHKVATPYNPQT 1597
Query: 961 SAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHL 1020
S QVE+SNR++K ILEKT+ RKDWS KLDDALWAYRTAFKT +G +P+ L+YGK+CHL
Sbjct: 1598 SGQVEISNREIKTILEKTVGITRKDWSAKLDDALWAYRTAFKTPIGTTPFNLLYGKSCHL 1657
Query: 1021 PVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKNLV 1080
PVELE+KA WA+K LNFD A +KRL++L++L+E+RL AYE++ IYK RTK +HDK ++
Sbjct: 1658 PVELEYKAMWAVKLLNFDIKTAEEKRLIQLSDLDEIRLEAYESSKIYKERTKLFHDKKII 1717
Query: 1081 SRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLPHGAVELMTPEGDRSFKVNGQR 1140
++D G VLL+NSRLKLFPGKLKS+WSGPF + V P+GAV L GD F VNGQR
Sbjct: 1718 TKDFQFGVQVLLFNSRLKLFPGKLKSRWSGPFCITEVRPYGAVTLAGKSGD--FTVNGQR 1775
Query: 1141 VKPYLGGDLPKERVGLVLKDL 1161
+K YL + E + L++L
Sbjct: 1776 LKKYLADQILPEVTSVHLQEL 1796
Score = 489 bits (1258), Expect = e-136
Identities = 266/615 (43%), Positives = 389/615 (63%), Gaps = 47/615 (7%)
Query: 25 KSQILKDGDKPQIIPSYV-KLPYPHLAKKKKKEEGQFKKFMQLFSQLQVNIPFGEALDQM 83
K +K+ +K + P Y +LP+P KK ++ + F + ++++ IP +AL +
Sbjct: 515 KPVAVKNKEKVFVPPPYKSQLPFPGRHKKALADKYR-AMFAKNIKEVELRIPLVDALALI 573
Query: 84 PVYAKFMKEMLTGRRKPKDDENISLSENCSAILQRKL-PPKLKDPGAFTIPCSIGPIDIG 142
P KF+K+++ R + + LS CSAI+Q+K+ P KL DPG+FT+PCS+GP+
Sbjct: 574 PDSHKFLKDLIVERIQEVQGM-VVLSHECSAIIQKKIIPKKLSDPGSFTLPCSLGPLAFN 632
Query: 143 RALCDLGASINLMPLSMMKKIGGGEPKPTRMTLTLADRSISYPFGVLEDVLVKVNDLIFP 202
R LCDLGAS++LMPLS+ K++G + K ++L LADRS+ P G+LE++ +++ + P
Sbjct: 633 RCLCDLGASVSLMPLSVAKRLGFTQYKSCNISLILADRSVRIPHGLLENLPIRIGAVEIP 692
Query: 203 GDFVILDMAEDEDMPLILGRPFLATGRALIDVEMGQLMLRFHNE-QVVLNIFEAMKHRAE 261
DFV+L+M E+ PLILGRPFLAT A+IDV+ G++ L + ++ ++ +AMK
Sbjct: 693 TDFVVLEMDEEPKDPLILGRPFLATAGAMIDVKKGKIDLNLGKDFRMTFDVKDAMKKPTI 752
Query: 262 NPKCYRIDVIDEIVEDDSRAPQPTQPLERTIVNS-------LESCDLDEDLEVKECIKQL 314
+ + I+ +D++ ++ L + S LE+ + L+ + +++
Sbjct: 753 EGQLFWIEEMDQLADELLEELAEEDHLNSALTKSGEDGFLHLETLGYQKLLDSHKAMEES 812
Query: 315 EASKQELGPVKIEEILGE-------------ISKGPQSSRKEEEKNP------------- 348
E ++ GP ++ E S + +E + P
Sbjct: 813 EPFEELNGPATEVMVMSEEGSTRVQPALSRTYSSNHSTLSTDEPREPIIPTSDDWSELKA 872
Query: 349 ---ELKELPSNLKYVFLSKDTSKPAIISSTLTLLEEEKLMRVLRENQGALGWKISDLKGI 405
+LK LP L+Y FL +++ P II++ L E L+ L++ + A+G+ +SD+KGI
Sbjct: 873 PKVDLKPLPKGLRYAFLGPNSTYPVIINAELNSDEVNLLLSELKKYRRAIGYSLSDIKGI 932
Query: 406 SPAYCMHRIHMEAEYKPVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHV 465
SP+ C HRIH+E E ++PQRRLNP +KEVVKKE+LKLL+AG+IYPISD +H
Sbjct: 933 SPSLCNHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISD------MHC 986
Query: 466 VPKKGGMTVVANDKNELIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQA 525
VPKK GMTVV N+K+ELIPTRT+TG RMCIDYR+LN+A+RKDHFPLPF+DQM+ERLA
Sbjct: 987 VPKKDGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHP 1046
Query: 526 FYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDM 585
+YCFLDGY+ + QI + P DQEKT FTCP+G FAY+RMPFGLC APATFQRCM SIFSD+
Sbjct: 1047 YYCFLDGYNGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDL 1106
Query: 586 IEKNIEVFMDDFSAF 600
IE+ +EVFMDDFS +
Sbjct: 1107 IEEMVEVFMDDFSVY 1121
>dbj|BAB02630.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 897
Score = 621 bits (1602), Expect = e-176
Identities = 313/561 (55%), Positives = 398/561 (70%), Gaps = 36/561 (6%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQ+ +K H IYYAS+ L++ Q YATTEKELLAV+FA EKFRSYL+GSKV V+TDHA
Sbjct: 370 VLGQKIDKKLHVIYYASRTLDDAQGRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHA 429
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMA 720
AL++L K D+KPRLLRWILLLQEFD+EI DKKG+EN ADHL R+ +E I
Sbjct: 430 ALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLLRMRIEEPLP----IDD 485
Query: 721 EFPDEKLFAIGERPWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTD 780
P+E+L + +F + K E+HQ N + P+
Sbjct: 486 SMPEEQLMVV---EFFGKSYSGK---------EFHQ-------LNDVEGESPW------- 519
Query: 781 GLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDK 840
RCV+ +E I+ HCH SAYGGH + +T +K+LQ+GFWWPT+FKD +FV++CD
Sbjct: 520 ----RCVSEDEVEGILLHCHCSAYGGHFATFKTVSKILQAGFWWPTMFKDAQEFVSKCDS 575
Query: 841 CQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPC 900
CQR +IS+ NEMP I+EVE FD WGIDFMG FPSSY +ILV +DYV+KWVEAI
Sbjct: 576 CQRKDNISRINEMPQNPIVEVEIFDVWGIDFMGLFPSSYGNKYILVAIDYVSKWVEAIAI 635
Query: 901 VANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQT 960
NDAK V+ + IF RFG PRV+ISDGGKHF N + EN+LKK+ ++HKVATPYHPQT
Sbjct: 636 PTNDAKVVLKLFKTIIFPRFGVPRVVISDGGKHFINKVFENLLKKHGVKHKVATPYHPQT 695
Query: 961 SAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHL 1020
S QVE+S+R++K ILEKT+ RKDWS KLDDALWAYRTAFKT +G +P+ ++YGK+CHL
Sbjct: 696 SGQVEISDREIKTILEKTVGITRKDWSAKLDDALWAYRTAFKTPIGTTPFNILYGKSCHL 755
Query: 1021 PVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKNLV 1080
PVELE+KA WA+K LNFD A +KRL++L++L+E+RL AYE++ IYK RTK +HDK ++
Sbjct: 756 PVELEYKAMWAVKLLNFDIKTAEEKRLIQLSDLDEIRLEAYESSKIYKERTKLFHDKKII 815
Query: 1081 SRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLPHGAVELMTPEGDRSFKVNGQR 1140
++D G VLL+NSRLKLFPGKLKS+WSGPF + V P+GAV L GD F VNGQR
Sbjct: 816 TKDFQVGDQVLLFNSRLKLFPGKLKSRWSGPFCITKVRPYGAVTLAGKSGD--FTVNGQR 873
Query: 1141 VKPYLGGDLPKERVGLVLKDL 1161
+K YL + E + L++L
Sbjct: 874 LKKYLADQILLEVTSVHLQEL 894
Score = 301 bits (772), Expect = 6e-80
Identities = 144/230 (62%), Positives = 178/230 (76%), Gaps = 12/230 (5%)
Query: 371 IISSTLTLLEEEKLMRVLRENQGALGWKISDLKGISPAYCMHRIHMEAEYKPVVQPQRRL 430
II++ L E + LR+ + A+G+ +SD+KGISP+ C HRIH+E E ++PQRRL
Sbjct: 2 IINAELNSDEVNLQLSELRKYRRAIGYSLSDIKGISPSLCNHRIHLENESYSSIEPQRRL 61
Query: 431 NPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTG 490
NP +AG+IYPISDS+WVS V+ VPKKGGMTVV N+K+ELIPTRT+TG
Sbjct: 62 NPNF------------DAGVIYPISDSTWVSLVYCVPKKGGMTVVKNEKDELIPTRTITG 109
Query: 491 WRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTA 550
RMCIDYR+LN+A+RKDHFPLPF+DQM+ERLA +YCFLDGYS + QI + P DQEKT
Sbjct: 110 HRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTT 169
Query: 551 FTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSAF 600
FTCP+G FAY+RMPFGLC APATFQRCM SIFSD+IE+ +EVFMDDFS +
Sbjct: 170 FTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSGY 219
>emb|CAB81136.1| putative athila transposon protein [Arabidopsis thaliana]
gi|25407395|pir||D85075 probable athila transposon
protein [imported] - Arabidopsis thaliana
Length = 724
Score = 541 bits (1394), Expect = e-152
Identities = 317/714 (44%), Positives = 434/714 (60%), Gaps = 102/714 (14%)
Query: 114 AILQRKL-PPKLKDPGAFTIPCSIGPIDIGRALCDLGASINLMPLSMMKKIGGGEPKPTR 172
AI Q+K+ P KL DPG+FT+PCS+GP+ R LCDLGA ++LMPLS+ K++G + K
Sbjct: 3 AITQKKIVPKKLIDPGSFTLPCSLGPLAFKRCLCDLGALVSLMPLSVAKRLGFTQYKSCN 62
Query: 173 MTLTLADRSISYPFGVLEDVLVKVNDLIFPGDFVILDMAEDEDMPLILGRPFLATGRALI 232
++L LADRS+ P + E++ +++ + P DFV+L+M E+ PLILGRPFLAT A+
Sbjct: 63 ISLILADRSVRIPHSLFENLPIRIGAVDIPTDFVVLEMDEEPKDPLILGRPFLATAGAMN 122
Query: 233 DVEMGQLMLRFHNE-QVVLNIFEAMKHRAENPKCYRIDVIDEIVED--DSRAPQP----- 284
DV+ G++ L ++ ++ +AMK + + I+ ID++ ++ + RA +
Sbjct: 123 DVKKGKIDLNLGKYCRMTFDVKDAMKKPTIKGQLFWIEEIDQLADELLEERAEEDHLYSA 182
Query: 285 -TQPLERTIVNSLESCDLDEDLEVKECIKQLEASKQELGPVKIEEILGE----------- 332
T+ E ++ LE+ + L+ + +++ E ++ GP ++ E
Sbjct: 183 LTKRGEDGFLH-LETLGYQKLLDSHKAMEESEPFEELNGPETEVMVMSEEGSTQVQPAHS 241
Query: 333 -----------ISKG-----PQSSRKEEEKNP--ELKELPSNLKYVFLSKDTSKPAIISS 374
IS P S E K P +LK LP L+YVF +++ P II+
Sbjct: 242 RTYSTNNSTSTISNSGELIIPTSDDWSELKAPKVDLKSLPKGLRYVFFGPNSTYPVIINV 301
Query: 375 TLTLLEEEKLMRVLRENQGALGWKISDLKGISPAYCMHRIHMEAEYKPVVQPQRRLNPTM 434
L E L+ LR+ + A+G+ +SD+K ISP+ C HRIH+E E ++PQRRLN +
Sbjct: 302 ELNDNEVNLLLSELRKYKRAIGYSLSDIKRISPSLCNHRIHLENESYSSIEPQRRLNLNL 361
Query: 435 KEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMC 494
KEVVKKE+LKLL+AG+IYPISDS+WV PVH VPKKGGMTVV N+K+ELIPTRT+TG R+C
Sbjct: 362 KEVVKKEILKLLDAGVIYPISDSTWVFPVHCVPKKGGMTVVKNEKDELIPTRTITGHRVC 421
Query: 495 IDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCP 554
IDYR+LN+A+RKDHFPLPF +QM+E LA + CFLDGYS + QI + P DQEKT FTCP
Sbjct: 422 IDYRKLNAASRKDHFPLPFTNQMLEGLANHLYNCFLDGYSGFFQIPIHPNDQEKTTFTCP 481
Query: 555 FGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIE-------VFMDDFSA-------- 599
+G FAY+RMPFGLC AP TFQRCM SIFSD+IEK +E V+ FS+
Sbjct: 482 YGTFAYKRMPFGLCNAPTTFQRCMTSIFSDLIEKMVEVFMDDFSVYGPSFSSCLLNLGRV 541
Query: 600 -----------------------FVLGQRKN--------------------KFFHAIYYA 616
VLG + + K IYYA
Sbjct: 542 LTKWEETNLVLNWEKCYFMVKEGIVLGHKISEKGIEVDKEKIKVMMQLQPPKTVKDIYYA 601
Query: 617 SKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHAALKYLLTKGDSKPRLL 676
S+ L+E Q YATTEKELL V+FA +KFRSYL+ SKV V+TDHAAL+++ K D+KPRLL
Sbjct: 602 SRTLDEAQGRYATTEKELLVVVFAFKKFRSYLVESKVTVYTDHAALRHMYAKKDTKPRLL 661
Query: 677 RWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMAEFPDEKLFAI 730
R ILLLQEFD+EI +KKG+EN ADHLSR+ +E I P+E+L +
Sbjct: 662 RGILLLQEFDMEIVEKKGIENGAADHLSRMRIEEPI----LIDDSMPEEQLMVV 711
>gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana]
Length = 1586
Score = 529 bits (1362), Expect = e-148
Identities = 269/526 (51%), Positives = 343/526 (65%), Gaps = 86/526 (16%)
Query: 620 LNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHAALKYLLTKGDSKPRLLRWI 679
+++ QV YATTEKELLAV+FA EKFRSYL+GSKV ++TDHAAL+++ K D+KPRLLRWI
Sbjct: 1128 MDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWI 1187
Query: 680 LLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMAEFPDEKLFAIGERPWFADM 739
LLLQEFD+EI DKKG+EN EKL PW+AD
Sbjct: 1188 LLLQEFDMEIVDKKGIEN---------------------------EKL------PWYADH 1214
Query: 740 ANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTDGLMRRCVAGEEAHSIMWHC 799
N+ P + +++KKFFKD NH+ WD+PYL+ + D + R CV+ +E I+ HC
Sbjct: 1215 VNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIEGILLHC 1274
Query: 800 HSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGII 859
H AYGGH + +T +K+LQ+
Sbjct: 1275 HGFAYGGHFATFKTMSKILQA--------------------------------------- 1295
Query: 860 EVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTR 919
EVE FD WGIDFMGPFPSSY +ILV +DYV+KWVEAI NDA+ V+ + IF R
Sbjct: 1296 EVENFDVWGIDFMGPFPSSYGNKYILVAIDYVSKWVEAIASHTNDARVVLKLFKTIIFPR 1355
Query: 920 FGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTI 979
FG PR++ISDGGKHF N EN+LKK+ ++HKV E+SNR++K ILEKT+
Sbjct: 1356 FGVPRIVISDGGKHFINKGFENLLKKHGVKHKV------------EISNREIKAILEKTV 1403
Query: 980 ASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQ 1039
S RKDWS KL+D LWAYRTAFKT +G +P+ L+YGK+CHLPVELE+KA WA+K LNFD
Sbjct: 1404 GSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDI 1463
Query: 1040 LAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKL 1099
A +KRL++LN+L ++RL AYE++ IYK RTK +HDK +VSRD G VLL+NSRL+L
Sbjct: 1464 KTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLLFNSRLRL 1523
Query: 1100 FPGKLKSKWSGPFLVKSVLPHGAVELMTPEGDRSFKVNGQRVKPYL 1145
FPGKLKS+WSGPF V +V P+GA+ L GD F VNGQR+K Y+
Sbjct: 1524 FPGKLKSRWSGPFSVTAVRPYGAITLAGKNGD--FTVNGQRLKKYM 1567
Score = 323 bits (828), Expect = 2e-86
Identities = 154/248 (62%), Positives = 188/248 (75%), Gaps = 8/248 (3%)
Query: 353 LPSNLKYVFLSKDTSKPAIISSTLTLLEEEKLMRVLRENQGALGWKISDLKGISPAYCMH 412
L +LK F +T K I + +EE + A+G+ + D+KGISP C H
Sbjct: 747 LGRDLKMTFDITNTMKKPTIEGNIFWIEEMDMK--------AIGYSLDDIKGISPTLCTH 798
Query: 413 RIHMEAEYKPVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGM 472
RIH+E E ++PQRRLNP +KEVVKKE+LKLL+AG+IYPISDS+WVSPVH VPKKGGM
Sbjct: 799 RIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGM 858
Query: 473 TVVANDKNELIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDG 532
TVV N K+ELIPTRT+TG RMCI+YR+LN A+RK+HFPLPF+D M+ERLA +YCFLD
Sbjct: 859 TVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDS 918
Query: 533 YSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEV 592
YS + QI + P DQ KT FTCP+G FAY+RMPFGLC APATFQRCM SIFSD+IE+ +EV
Sbjct: 919 YSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEV 978
Query: 593 FMDDFSAF 600
FMDDFS +
Sbjct: 979 FMDDFSVY 986
Score = 165 bits (417), Expect = 9e-39
Identities = 95/238 (39%), Positives = 144/238 (59%), Gaps = 4/238 (1%)
Query: 38 IPSYVKLPYPHLAKKKKKEEGQFKKFMQL-FSQLQVNIPFGEALDQMPVYAKFMKEMLTG 96
IP K P P + KK ++K ++ L+V +P + L +P K++K+M+T
Sbjct: 541 IPPPYKPPLPFPGRFKKVMIQKYKALLEKQLKNLEVTMPLVDCLALIPDSNKYVKDMITE 600
Query: 97 RRKPKDDENISLSENCSAILQRKL-PPKLKDPGAFTIPCSIGPIDIGRALCDLGASINLM 155
R K + LS CSAI+Q+K+ P KL DPG+FT+PC++GP+ + LCDLGAS++LM
Sbjct: 601 RIKEVQGM-VVLSHECSAIIQQKIIPKKLGDPGSFTLPCALGPLAFSKCLCDLGASVSLM 659
Query: 156 PLSMMKKIGGGEPKPTRMTLTLADRSISYPFGVLEDVLVKVNDLIFPGDFVILDMAEDED 215
PL + KK+G + KP ++L LADRS+ G+LED+ V + + P DFV+L+M E+
Sbjct: 660 PLPVAKKLGFNKYKPCNISLILADRSVRISHGLLEDLPVMIGVVEVPTDFVVLEMDEEPK 719
Query: 216 MPLILGRPFLATGRALIDVEMGQLMLRFHNE-QVVLNIFEAMKHRAENPKCYRIDVID 272
PLILGRPFLA RA+IDV+ G++ L + ++ +I MK + I+ +D
Sbjct: 720 DPLILGRPFLARARAIIDVKKGKIDLNLGRDLKMTFDITNTMKKPTIEGNIFWIEEMD 777
>emb|CAD39877.2| OSJNBb0058J09.16 [Oryza sativa (japonica cultivar-group)]
gi|50922333|ref|XP_471527.1| OSJNBb0058J09.16 [Oryza
sativa (japonica cultivar-group)]
Length = 1045
Score = 528 bits (1360), Expect = e-148
Identities = 264/476 (55%), Positives = 336/476 (70%), Gaps = 22/476 (4%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQ K+K HAI YASK L Q+NYATTEKELL V+FA++KFRSYL+G+KVI++TDHA
Sbjct: 590 VLGQTKDKKHHAICYASKTLTGAQLNYATTEKELLTVVFAIDKFRSYLVGAKVIIYTDHA 649
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMA 720
ALKYLLTK D+KPRLLRWILLLQEFD+EI+DKKGVEN VADHLSRL + ++ I
Sbjct: 650 ALKYLLTKKDAKPRLLRWILLLQEFDIEIKDKKGVENYVADHLSRLHITNMQEQP--IND 707
Query: 721 EFPDEKLFAIGERPWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTD 780
D+ L I P + +QRK ++ H +WD+PYL++V +D
Sbjct: 708 LLRDDMLMTC----------------IPPGE---NQRKLKYESHRH-IWDEPYLYRVCSD 747
Query: 781 GLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDK 840
GL+RRCV +E I+ CH+S YGGH+ RT AK+ QSGF+WPT+++D +F+ RC
Sbjct: 748 GLLRRCVPTDEGLKIIERCHASPYGGHYGAFRTQAKIWQSGFFWPTMYEDSKEFIRRCTS 807
Query: 841 CQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPC 900
CQR G I+ R+ MPLT ++VE FD WGIDFMGPFP S + +ILV VDYV+KWVEA+PC
Sbjct: 808 CQRQGGITARDAMPLTYNLQVEIFDVWGIDFMGPFPKSRNCEYILVAVDYVSKWVEAMPC 867
Query: 901 VANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQT 960
A DA+ + IF RFGT R++ISD G HF + ++L++ +H VATPYHPQT
Sbjct: 868 SAADARHAKKMFTETIFPRFGTRRMVISDRGFHFIDKTFRDLLREMEAKHNVATPYHPQT 927
Query: 961 SAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHL 1020
S Q E SN+Q+K IL+KT+ +W +L DALWAYRTA+KT +G SPYQ+VYGK+C L
Sbjct: 928 SGQAETSNKQIKNILQKTVNKMGTEWKDRLQDALWAYRTAYKTPIGMSPYQIVYGKSCRL 987
Query: 1021 PVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHD 1076
PVELEH+AYWAI+ N D AG+ R +++ ELEE R AY NA IYK RTKR+HD
Sbjct: 988 PVELEHRAYWAIRNSNMDFEGAGEWRKMQIAELEEWREMAYHNAKIYKERTKRWHD 1043
Score = 99.0 bits (245), Expect = 8e-19
Identities = 51/102 (50%), Positives = 69/102 (67%)
Query: 349 ELKELPSNLKYVFLSKDTSKPAIISSTLTLLEEEKLMRVLRENQGALGWKISDLKGISPA 408
ELK LP L+Y FL D P IIS L+ E ++L VL +++ LG+ + DL+GI+ A
Sbjct: 366 ELKPLPLGLRYAFLHNDREAPVIISDKLSKDETQRLPTVLEKHRSVLGYSLQDLRGINLA 425
Query: 409 YCMHRIHMEAEYKPVVQPQRRLNPTMKEVVKKEVLKLLNAGM 450
C HRI ++ + P +PQRRLN M+EVVKKEVLKLL+AG+
Sbjct: 426 LCTHRIPIDPKSTPSREPQRRLNNEMQEVVKKEVLKLLHAGI 467
>gb|AAR00600.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50901488|ref|XP_463177.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 743
Score = 527 bits (1358), Expect = e-148
Identities = 269/510 (52%), Positives = 351/510 (68%), Gaps = 10/510 (1%)
Query: 639 FALEKFRSYLIGSKVIVFTDHAALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENV 698
FA+ FRSYL+ +KVI++TDHAALKY LTK D+KPRLLRWILLLQEFDLEI+DKKGVEN
Sbjct: 220 FAVGAFRSYLVRAKVIIYTDHAALKYPLTKKDAKPRLLRWILLLQEFDLEIKDKKGVENS 279
Query: 699 VADHLSRLDNKEVTKKKGAIMAEF-PDEKLFAIGE-RPWFADMANFKAGNIVPDDFEYHQ 756
VADHLSRL ++T + +F D+ L + + PW+A++ N+ +P +Q
Sbjct: 280 VADHLSRL---QITNMPEQPINDFLRDDMLMTVRDSNPWYANIVNYMVFKYIPPG--KNQ 334
Query: 757 RKKFFKDANHYVWDDPYLFKVSTDGLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAK 816
R ++ H +WD+PYL++V +DGL+RRCV EE I+ CH+S YGGH+ RT AK
Sbjct: 335 RNLKYESRRH-IWDEPYLYRVCSDGLLRRCVPTEEGLKIIERCHASPYGGHYGVFRTQAK 393
Query: 817 VLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFP 876
+ QSGF+WPT+++D +FV RC CQR G I+ R+ MPLT ++VE FD WGIDFMGPFP
Sbjct: 394 IWQSGFFWPTMYEDSKEFVRRCTSCQRQGGITARDAMPLTYNLQVEIFDVWGIDFMGPFP 453
Query: 877 SSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCN 936
S + +ILV VDYV+KWV+A+PC A DA+ + IF +F TPR++ISDGG HF +
Sbjct: 454 KSRNCEYILVAVDYVSKWVKAMPCSATDARHAKKMFIEIIFPKFDTPRMVISDGGSHFID 513
Query: 937 NLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWA 996
++L++ +H VATPYHPQTS Q E SN+Q+K IL+KT+ W +L DAL A
Sbjct: 514 KTFRDLLREMGAKHNVATPYHPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRLPDALCA 573
Query: 997 YRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEM 1056
Y A+KT + SPYQ+VY K C LPVELEH+AYWAI+ N D AG+ R +++ ELEE
Sbjct: 574 YWIAYKTPIRMSPYQIVYRKPCRLPVELEHRAYWAIRNWNMDFEGAGEWRKMQIAELEEW 633
Query: 1057 RLRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLF-PGKLKSKWSGPFLVK 1115
R +AY NA IYK RTKR+HDK + G VL++NSR+KLF GKL+SKW GPF V
Sbjct: 634 REKAYHNAKIYKERTKRWHDKRKKIKKFKPGDKVLMFNSRVKLFGHGKLRSKWEGPFDVI 693
Query: 1116 SVLPHGAVELMTPEGDRSFKVNGQRVKPYL 1145
HGA+ L G+ FKVNGQR+K +L
Sbjct: 694 DTSSHGAITLRDELGN-IFKVNGQRLKIFL 722
Score = 214 bits (546), Expect = 1e-53
Identities = 95/129 (73%), Positives = 113/129 (86%)
Query: 472 MTVVANDKNELIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLD 531
MTVVAN +NELIP RTVTGWRMCIDYR+LN AT++DHFPLPF+D+M+ER+A +F+CFLD
Sbjct: 1 MTVVANAQNELIPQRTVTGWRMCIDYRKLNKATKEDHFPLPFIDEMLERMANHSFFCFLD 60
Query: 532 GYSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIE 591
GYS Y+QI + PEDQ KT FTCP+G +AYRRM FGLC APA+FQRCM+SIFSDMIE +E
Sbjct: 61 GYSGYHQIPIHPEDQSKTTFTCPYGTYAYRRMSFGLCNAPASFQRCMMSIFSDMIEDIME 120
Query: 592 VFMDDFSAF 600
VFMDDFS +
Sbjct: 121 VFMDDFSVY 129
>gb|AAD23707.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411232|pir||G84476 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 466
Score = 525 bits (1353), Expect = e-147
Identities = 245/431 (56%), Positives = 317/431 (72%), Gaps = 2/431 (0%)
Query: 731 GERPWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTDGLMRRCVAGE 790
G PW+AD N+ A I P + ++RK FF+D +HY WD+PYL+ + D + R V+ +
Sbjct: 35 GGSPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYLYTLCKDKIYRSYVSED 94
Query: 791 EAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKR 850
E I+ HCH SAYGGH + +T +K+LQ+GFWWPT+FKD +FV++CD CQR G+IS+R
Sbjct: 95 EVEGILLHCHDSAYGGHFATFKTVSKILQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRR 154
Query: 851 NEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVS 910
NEMP I+EV+ FD WGIDFMGPFPSSY +ILV VDYV+KWVEAI NDAK V+
Sbjct: 155 NEMPQNPILEVDIFDVWGIDFMGPFPSSYGNKYILVVVDYVSKWVEAIASPTNDAKVVLK 214
Query: 911 FLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQ 970
+ IF RFG V+ISDGGKHF N + EN+LKK+ ++HKVATPYHPQTS QVE+SNR+
Sbjct: 215 LFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISNRE 274
Query: 971 LKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYW 1030
+K ILEKT+ RKDWS KLDDALWAY+TAFKT +G +P+ L+ K+CHL VELE+KA W
Sbjct: 275 IKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPFNLLCVKSCHLHVELEYKAMW 334
Query: 1031 AIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKNLVSRDINSGQLV 1090
A+K LNFD A +KRL++L+EL+E+RL AYE++ IYK RTK +HDK ++++D G V
Sbjct: 335 AVKLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQV 394
Query: 1091 LLYNSRLKLFPGKLKSKWSGPFLVKSVLPHGAVELMTPEGDRSFKVNGQRVKPYLGGDLP 1150
LL+NSRLK+FPGKLKS+WSGPF + V P+GAV L G F VNGQR+K YL +
Sbjct: 395 LLFNSRLKIFPGKLKSRWSGPFCITEVRPYGAVTLAGKSG--VFTVNGQRLKKYLANQIL 452
Query: 1151 KERVGLVLKDL 1161
E + L++L
Sbjct: 453 PEVTSIHLQEL 463
>dbj|BAB02143.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1118
Score = 516 bits (1329), Expect = e-144
Identities = 282/569 (49%), Positives = 362/569 (63%), Gaps = 66/569 (11%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VL QRK+K HAIYYAS+ L+ QVNYATTEKELL ++FA EKFRSYL+ SKVIV TDHA
Sbjct: 603 VLRQRKDKKLHAIYYASRTLDGAQVNYATTEKELLVIVFAFEKFRSYLVRSKVIVHTDHA 662
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMA 720
L+YLL+K D+KPRLLRWILLLQ+FDLEI+DKKG+EN VAD+LSRL +E + +
Sbjct: 663 TLRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENGVADNLSRLRVEEEVPMRDTL-- 720
Query: 721 EFPDEKLFAIGERPWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTD 780
P E L +I + D+ +VST
Sbjct: 721 --PGENLASIED----------------------------------CYMDEVERLRVSTL 744
Query: 781 GLMRRCVAGEEAHSIMWHCHSSAYGGHHS--------GERTTAKVLQSGFW-WPTLFKDC 831
LM ++ W+ + Y ++ K +Q +W P L+K C
Sbjct: 745 ELMTLHTGDS---NLPWYADFANYLSCELPPPDFTGYSKKKFLKDVQRYYWDEPYLYKKC 801
Query: 832 HDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYV 891
D + R +C +P + + EV FD WGIDFMGPFPSSY +ILV VDYV
Sbjct: 802 ADNLFR--RC-----------IPESEVEEV--FDVWGIDFMGPFPSSYGNEYILVAVDYV 846
Query: 892 TKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHK 951
+KWVEAI C NDA V+ +K IF RFG PRV+ISDGG+HF N + N+L K+ + HK
Sbjct: 847 SKWVEAIACRKNDAVVVLKLFKKIIFPRFGVPRVVISDGGRHFINKVFANLLAKHGVNHK 906
Query: 952 VATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQ 1011
VATPYHPQT QVE+SNR++K ILEKT+ +RKDW+ KLDDALW YRTA+KT +G +P+
Sbjct: 907 VATPYHPQTCGQVEISNREIKGILEKTVGKSRKDWAAKLDDALWTYRTAYKTPIGTTPFN 966
Query: 1012 LVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKART 1071
L+YGK+CHLPVELE+KA WA K +NFD A ++RL++LNEL+E+ L AYE++ IYK RT
Sbjct: 967 LIYGKSCHLPVELEYKALWATKLMNFDIKPAAERRLVQLNELDEIHLNAYESSRIYKERT 1026
Query: 1072 KRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLPHGAVELMTPEGD 1131
K HDK ++ R G VLL+NSRLK+FPGKL+SKWSGPF++K + P+G+ L G+
Sbjct: 1027 KAIHDKKIILRQFTEGDKVLLFNSRLKIFPGKLRSKWSGPFVIKEMRPNGSAVLWDNNGE 1086
Query: 1132 RSFKVNGQRVKPYLGGDLPKERVGLVLKD 1160
F NGQR+KPYL P+E + L D
Sbjct: 1087 -PFSTNGQRLKPYLAHSTPEEGTAVPLTD 1114
Score = 60.1 bits (144), Expect = 4e-07
Identities = 37/110 (33%), Positives = 66/110 (59%), Gaps = 6/110 (5%)
Query: 12 EKLIDEDSILKK---SKSQILKDGDKPQIIPSYV-KLPYPHLAKKKKKEEGQFKKFMQLF 67
EK +D++ +++K K K+ D+ + P YV KLP+P +K ++E+ ++ F ++
Sbjct: 393 EKKMDDEPLVEKVEVEKKVPEKEQDETVVPPPYVPKLPFPGRQRKIQREK-EYALFDEIM 451
Query: 68 SQLQVNIPFGEALDQMPVYAKFMKEMLTGRRKPKDDENISLSENCSAILQ 117
QLQV +PF E + + +Y K +K+ LT +R ++ + +S CSAILQ
Sbjct: 452 RQLQVMLPFLELVQNVSIYRKHLKDNLTNKR-TLEEGAVLISHECSAILQ 500
>gb|AAD19780.2| hypothetical protein [Arabidopsis thaliana]
Length = 1048
Score = 467 bits (1202), Expect = e-130
Identities = 272/634 (42%), Positives = 379/634 (58%), Gaps = 43/634 (6%)
Query: 2 KGRKKQGEKSEKLIDEDSILKKSK--------------SQILKDGDKPQIIPSYV-KLPY 46
KG K G + ++ ++ +KSK S L++ K ++P YV KLP+
Sbjct: 41 KGGHKSGRELNPILKKEKAKEKSKAASDDLEEDNTGKESDTLEEKAKKTVLPPYVPKLPF 100
Query: 47 PHLAKKKKKEEGQFKKFMQLFSQLQVNIPFGEALDQMPVYAKFMKEMLTGRRKPKDDENI 106
P +K ++E+ ++ F ++ QLQV +PF + + + +Y K +K++LT +R ++ ++
Sbjct: 101 PGRQRKIQREK-EYSLFDEIMRQLQVKLPFLDLVQNVSIYRKHLKDILTNKRT-LEEGHV 158
Query: 107 SLSENCSAILQRKLPPKLKDPGAFTIPCSIGPIDIGRALCDLGASINLMPLSMMKKIGGG 166
+S CSAILQ IG R LCDLGA ++LMP S+ K++G
Sbjct: 159 LISHECSAILQN----------VALFSRMIGEYTFDRCLCDLGAGVSLMPFSVAKRLGDT 208
Query: 167 EPKPTRMTLTLADRSISYPFGVLEDVLVKVNDLIFPGDFVILDMAEDEDMPLILGRPFLA 226
PT+M+L L DRSIS+P GV EDV V+V + P DFVI+++ E+ LILGRPFL
Sbjct: 209 NFTPTKMSLVLGDRSISFPVGVAEDVQVRVGNFYIPTDFVIIELDEEPRHRLILGRPFLN 268
Query: 227 TGRALIDVEMGQLMLRFHNEQVVLNIFEAMKHRAENPKCYRIDVIDEIVEDDSRAPQPTQ 286
ALIDV ++ LR + N+ M + + +D++DE+V +
Sbjct: 269 IVAALIDVRKSKINLRIGDIVQEFNMERIMSKPTTECQTFWVDIMDELVNELLAELNTED 328
Query: 287 PLERTIVNSLESCDLDEDLEVKECIKQLEASKQ--------ELGPVKIEEILGEISKGPQ 338
PL+ T++ ES + L++S ELG ++E+ L + P+
Sbjct: 329 PLQ-TVLTKEESEFGYLGEATTRFARILDSSSPMTKVVAFAELGDNEVEKAL--VVSSPK 385
Query: 339 SSRKEEEKNP---ELKELPSNLKYVFLSKDTSKPAIISSTLTLLEEEKLMRVLRENQGAL 395
E N ELK LP+ L+ FL +++ II+ L +E L+ LR+ + AL
Sbjct: 386 DCDDWSELNAPKMELKPLPARLRVAFLGPNSTYLVIINPELNNVESALLLCELRKYRKAL 445
Query: 396 GWKISDLKGISPAYCMHRIHMEAEYKPVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPIS 455
G+ + D+ GISP CMH IH+E E V+ QRRLN +++VVKKE++KLL+AG+IYPIS
Sbjct: 446 GYSLDDITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLDAGIIYPIS 505
Query: 456 DSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMD 515
DS+WVSPVHVVPKKGG+ V+ N+KNELIPTRTVTG RMCIDYR+LNSATRKD+FPL F+D
Sbjct: 506 DSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKDNFPLSFID 565
Query: 516 QMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQ 575
QM+ERL+ Q +YCFLDGY + QI + P+DQEKT FTCP+G FAYRRMPFGLC APATFQ
Sbjct: 566 QMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGLCNAPATFQ 625
Query: 576 RCMLSIFSDMIEKNIEVFMDDFSAFVLGQRKNKF 609
CM IFSDMIE +E D VL K+ F
Sbjct: 626 HCMKYIFSDMIEDFMERCED--KHLVLNWEKSHF 657
Score = 131 bits (329), Expect = 2e-28
Identities = 70/163 (42%), Positives = 98/163 (59%), Gaps = 31/163 (19%)
Query: 999 TAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAG-KKRLLKLNELEEMR 1057
T +KT +G +P+ L+YGK+CHLPVELE+KA WA K +N+D AG ++RLL+LNEL+E++
Sbjct: 912 TTYKTPVGTTPFNLIYGKSCHLPVELEYKALWATKLMNYDIKPAGERRRLLQLNELDEIQ 971
Query: 1058 LRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSV 1117
G VLL+NS+LK+FPGKL+SKWSGPF++ +
Sbjct: 972 -----------------------------GDKVLLFNSKLKIFPGKLRSKWSGPFVIMEM 1002
Query: 1118 LPHGAVELMTPEGDRSFKVNGQRVKPYLGGDLPKERVGLVLKD 1160
P+G+ L G + F NGQR+KPYL +E + L D
Sbjct: 1003 RPNGSAILWDNNG-KPFSTNGQRLKPYLAHSTLEEGTAVPLTD 1044
Score = 121 bits (304), Expect = 1e-25
Identities = 76/184 (41%), Positives = 100/184 (54%), Gaps = 49/184 (26%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQRK+K HAIYYAS+ L+ G++VIV T HA
Sbjct: 747 VLGQRKDKKLHAIYYASRTLD----------------------------GAQVIVHTVHA 778
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKK----G 716
AL+YLL+K D+KPRLLRWILLLQ+FDLEI+DKKG+EN VAD+LSRL +E + G
Sbjct: 779 ALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEVADNLSRLRVQEEVLMRDILPG 838
Query: 717 AIMAEFPDEKLFAIG-----------------ERPWFADMANFKAGNIVPDDFEYHQRKK 759
+A D + +G PW+AD AN+ + + P DF + +KK
Sbjct: 839 ENLASIEDCYMDEVGRLRVSTLELMTLHTGESNLPWYADFANYLSCEVPPPDFTGYFKKK 898
Query: 760 FFKD 763
K+
Sbjct: 899 LLKE 902
>pir||D84513 probable retroelement pol polyprotein [imported] - Arabidopsis
thaliana
Length = 841
Score = 467 bits (1201), Expect = e-129
Identities = 264/587 (44%), Positives = 356/587 (59%), Gaps = 51/587 (8%)
Query: 23 KSKSQILKDGDKPQIIPSYV-KLPYPHLAKKKKKEEGQFKKFMQLFSQLQVNIPFGEALD 81
K + Q L++ K ++P YV KLP+P +K ++E+ ++ F ++ QLQ
Sbjct: 2 KLRKQTLEEKAKKTVLPPYVPKLPFPGRQRKIQREK-EYSLFDEIMRQLQ---------- 50
Query: 82 QMPVYAKFMKEMLTGRRKPKDDENISLSENCSAILQRKLPPKLKDPGAFTIPCSIGPIDI 141
S CSAILQ +P K +DPG+F +P IG
Sbjct: 51 -------------------------RYSPECSAILQNVIPVKREDPGSFVLPSRIGEYTF 85
Query: 142 GRALCDLGASINLMPLSMMKKIGGGEPKPTRMTLTLADRSISYPFGVLEDVLVKVNDLIF 201
R LCDLGA ++LMP S+ K++G PT+M+L L DRSIS+P GV EDV V+V +
Sbjct: 86 DRCLCDLGAGVSLMPFSVAKRLGDTNFTPTKMSLVLGDRSISFPVGVAEDVQVRVGNFYI 145
Query: 202 PGDFVILDMAEDEDMPLILGRPFLATGRALIDVEMGQLMLRFHNEQVVLNIFEAMKHRAE 261
P DFVI+++ E+ LILGRPFL ALIDV ++ LR + N+ M
Sbjct: 146 PTDFVIIELDEEPRHRLILGRPFLNIVAALIDVRKSKINLRIGDIVQEFNMERIMSKPTT 205
Query: 262 NPKCYRIDVIDEIVEDDSRAPQPTQPLERTIVNSLESCDLDEDLEVKECIKQLEASKQ-- 319
+ + +D++DE+V + PL+ T++ ES + L++S
Sbjct: 206 ECQTFWVDIMDELVNELLAELNTEDPLQ-TVLTKEESEFGYLGEATTRFARILDSSSPMT 264
Query: 320 ------ELGPVKIEEILGEISKGPQSSRKEEEKNP---ELKELPSNLKYVFLSKDTSKPA 370
ELG ++E+ L + P+ E N ELK LP+ L+ FL +++
Sbjct: 265 KVVAFAELGDNEVEKAL--VVSSPKDCDDWSELNAPKMELKPLPARLRVAFLGPNSTYLV 322
Query: 371 IISSTLTLLEEEKLMRVLRENQGALGWKISDLKGISPAYCMHRIHMEAEYKPVVQPQRRL 430
II+ L +E L+ LR+ + ALG+ + D+ GISP CMH IH+E E V+ QRRL
Sbjct: 323 IINPELNNVESALLLCELRKYRKALGYSLDDITGISPTLCMHMIHLEGESITSVEHQRRL 382
Query: 431 NPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTG 490
N +++VVKKE++KLL+AG+IYPISDS+WVSPVHVVPKKGG+ V+ N+KNELIPTRTVTG
Sbjct: 383 NSNLRDVVKKEIMKLLDAGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTG 442
Query: 491 WRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTA 550
RMCIDYR+LNSATRKD+FPL F+DQM+ERL+ Q +YCFLDGY + QI + P+DQEKT
Sbjct: 443 HRMCIDYRKLNSATRKDNFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTT 502
Query: 551 FTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDF 597
FTCP+G FAYRRMPFGLC APATFQ CM IFSDMIE +EVF+DDF
Sbjct: 503 FTCPYGTFAYRRMPFGLCNAPATFQHCMKYIFSDMIEDFMEVFIDDF 549
Score = 121 bits (304), Expect = 1e-25
Identities = 76/184 (41%), Positives = 100/184 (54%), Gaps = 49/184 (26%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQRK+K HAIYYAS+ L+ G++VIV T HA
Sbjct: 675 VLGQRKDKKLHAIYYASRTLD----------------------------GAQVIVHTVHA 706
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKK----G 716
AL+YLL+K D+KPRLLRWILLLQ+FDLEI+DKKG+EN VAD+LSRL +E + G
Sbjct: 707 ALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEVADNLSRLRVQEEVLMRDILPG 766
Query: 717 AIMAEFPDEKLFAIG-----------------ERPWFADMANFKAGNIVPDDFEYHQRKK 759
+A D + +G PW+AD AN+ + + P DF + +KK
Sbjct: 767 ENLASIEDCYMDEVGRLRVSTLELMTLHTGESNLPWYADFANYLSCEVPPPDFTGYFKKK 826
Query: 760 FFKD 763
K+
Sbjct: 827 LLKE 830
>gb|AAM15254.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411471|pir||B84505 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 930
Score = 446 bits (1148), Expect = e-123
Identities = 202/360 (56%), Positives = 268/360 (74%), Gaps = 6/360 (1%)
Query: 734 PWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTDGLMRRCVAGEEAH 793
PW+AD+ N+ A ++ PD+F + +K+F ++ Y WD+PYL+K S DG+ RRC+A E
Sbjct: 137 PWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYRRCIAATEVP 196
Query: 794 SIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEM 853
SI+ HCHSS+YGGH + +T +KVLQ+ FWWPT+F+D F+++CD CQR G ISKRNEM
Sbjct: 197 SILSHCHSSSYGGHFATFKTVSKVLQADFWWPTMFRDTQKFISQCDPCQRRGKISKRNEM 256
Query: 854 PLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQ 913
P +EVE FD WGIDFMGPFP S L+ILV VDYV+KWVEAI + ND+ V+ +
Sbjct: 257 PPNFRLEVEVFDRWGIDFMGPFPPSNKNLYILVDVDYVSKWVEAIASLKNDSAVVMKLFK 316
Query: 914 KNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQ 973
IF RFG PR++ISDG KHF N +LE +L +Y ++H+VATPYHPQTS QVEVSNRQ+K+
Sbjct: 317 SIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKE 376
Query: 974 ILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIK 1033
ILEKT+ +K+WS KL DALWAY+TAFKT LG +P+ L+YGKACHLPVELEHKA WA+K
Sbjct: 377 ILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACHLPVELEHKAAWAVK 436
Query: 1034 ALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKNLVSRDINSGQLVLLY 1093
+NFD +AG+ +EL+E+R+ AY+N+ +YK RTK YHDK +++R +L +
Sbjct: 437 MMNFDIKSAGE------SELDEIRIHAYDNSKLYKERTKAYHDKKILTRTFEPNDQILRF 490
Score = 69.3 bits (168), Expect = 7e-10
Identities = 32/41 (78%), Positives = 37/41 (90%)
Query: 666 LTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRL 706
+ K D+KPRLL WILLLQEFD+E+RDKKGVEN VADHLSR+
Sbjct: 1 MQKKDAKPRLLIWILLLQEFDIEVRDKKGVENGVADHLSRI 41
>emb|CAD40178.2| OSJNBa0061A09.17 [Oryza sativa (japonica cultivar-group)]
gi|50921885|ref|XP_471303.1| OSJNBa0061A09.17 [Oryza
sativa (japonica cultivar-group)]
Length = 430
Score = 444 bits (1141), Expect = e-122
Identities = 218/435 (50%), Positives = 291/435 (66%), Gaps = 19/435 (4%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQ K++ HAI YASK L Q+NY+TTEKELLAV+ G+KV+V+TDHA
Sbjct: 12 VLGQTKDRKQHAIAYASKTLTGAQLNYSTTEKELLAVV-----------GAKVVVYTDHA 60
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMA 720
ALKYLLTK D+KPRL+RWIL+LQEFD+EI +KKG+EN VADHLSR+ ++T + +
Sbjct: 61 ALKYLLTKKDAKPRLIRWILILQEFDIEINNKKGIENSVADHLSRM---QITNMQELSIN 117
Query: 721 EF-PDEKLFAIGER-PWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVS 778
++ D+ L + + PW+A + NF VP +K+ ++ +WD PYL++V
Sbjct: 118 DYLRDDMLLKVTDSDPWYAPIVNFMVAWHVPPG---ENKKRLSYESRKRLWDAPYLYRVC 174
Query: 779 TDGLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARC 838
+D L+RRCV +E I+ C + YG H+ RT AK+ QSGF+WPT++ D +F+ RC
Sbjct: 175 SDSLLRRCVPADEGMEIIEKCRVAPYGSHYGAFRTHAKIWQSGFFWPTMYGDTKEFIRRC 234
Query: 839 DKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAI 898
CQ+ G I+ ++ MPLT ++VE FD WGIDFMGPFP Y +ILV VDYV+KWVEA+
Sbjct: 235 TSCQKHGGITAQDAMPLTYNLQVELFDVWGIDFMGPFPKFYDCEYILVAVDYVSKWVEAM 294
Query: 899 PCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHP 958
PC A + K + IF FGTPR +ISDGG HF + +N L++ +H + TPYHP
Sbjct: 295 PCRAANTKHAHRMFDEIIFPCFGTPRTVISDGGSHFIDKTFQNFLQELGAQHNIVTPYHP 354
Query: 959 QTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKAC 1018
+T Q E N+Q+ IL+KT+ K W KL +ALWAYRT + +G SPYQLVYGK C
Sbjct: 355 KTGGQAETRNKQIMNILQKTVNEMGKAWKNKLPNALWAYRTTYNMPIGMSPYQLVYGKTC 414
Query: 1019 HLPVELEHKAYWAIK 1033
HLPVELEHKA+WAI+
Sbjct: 415 HLPVELEHKAHWAIR 429
>gb|AAF63114.1| Hypothetical protein [Arabidopsis thaliana] gi|25405147|pir||B96502
hypothetical protein F28H19.8 [imported] - Arabidopsis
thaliana
Length = 640
Score = 409 bits (1051), Expect = e-112
Identities = 198/358 (55%), Positives = 247/358 (68%), Gaps = 22/358 (6%)
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQR +K H IYYAS+ L++ Q YATTEKELL V+FA EKFRSYL+GSKV V+TDHA
Sbjct: 285 VLGQRIDKKLHVIYYASRTLDDTQSRYATTEKELLVVVFAFEKFRSYLVGSKVTVYTDHA 344
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMA 720
ALK++ K D+KPRLLRWIL LQEFD+EI DK+G EN VADHLSR+ E I
Sbjct: 345 ALKHIYAKKDTKPRLLRWILFLQEFDMEIVDKRGSENGVADHLSRMRMTEAVP----IDD 400
Query: 721 EFPDEKLFAIG-----------------ERPWFADMANFKAGNIVPDDFEYHQRKKFFKD 763
P+E+L A+G + PW+ D+ N+ IVP + +Q+KKFF+D
Sbjct: 401 SMPEEQLLAVGTSFDKFKIETMCATRSGKLPWYVDLVNYLTAGIVPSELSSYQKKKFFRD 460
Query: 764 ANHYVWDDPYLFKVSTDGLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFW 823
NHY WD+P L+K DGL RRC+A EE ++ CH+S YGGH + +T KVLQ+G W
Sbjct: 461 INHYYWDEPVLYKKGVDGLFRRCIAEEEVQGVLELCHNSPYGGHFATFKTVQKVLQAGLW 520
Query: 824 WPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPF-PSSYSFL 882
WP++FKD H+ + RCD+CQR G+IS+RNEMP I+EVE FD WGIDFMGPF P+SY
Sbjct: 521 WPSMFKDAHEHITRCDRCQRVGNISRRNEMPQNPILEVEVFDVWGIDFMGPFEPASYGNK 580
Query: 883 HILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLE 940
+ILV VDYV+KWVEAI ND+K V+ + IF RFG PRV+ISDGG HF N + E
Sbjct: 581 YILVAVDYVSKWVEAIASPTNDSKVVLKLFKTIIFPRFGIPRVVISDGGSHFINKVFE 638
>gb|AAM94940.1| conserved hypothetical protein [Arabidopsis thaliana]
Length = 367
Score = 393 bits (1010), Expect = e-107
Identities = 190/323 (58%), Positives = 240/323 (73%), Gaps = 2/323 (0%)
Query: 839 DKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILVCVDYVTKWVEAI 898
D CQR G+IS+RNEMP I+EV+ FD WGIDFMGPFPSSY +ILV VDYV+ VEAI
Sbjct: 44 DSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFPSSYGNKYILVAVDYVSNRVEAI 103
Query: 899 PCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHP 958
NDAK ++ + IF RFG RV+ISDGGKHF N + EN+LKKY ++HKV TPYHP
Sbjct: 104 ASPTNDAKVMLKLFKTIIFPRFGVLRVVISDGGKHFINKVFENLLKKYGVKHKVTTPYHP 163
Query: 959 QTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKAC 1018
QTS QVE+SNR++K ILEKT+ + RKDWS KLDDALW RTAFKT +G + + L+YGK+C
Sbjct: 164 QTSEQVEISNREIKTILEKTVGTTRKDWSAKLDDALWDNRTAFKTPIGTTLFNLLYGKSC 223
Query: 1019 HLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKN 1078
HLPVELE+KA WA+K LNFD +KRL++L++L+E+RL AYE++ IYK RTK +HDK
Sbjct: 224 HLPVELEYKAMWAVKLLNFDIKTTEEKRLIQLSDLDEIRLEAYESSKIYKERTKLFHDKK 283
Query: 1079 LVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLPHGAVELMTPEGDRSFKVNG 1138
++++D G VLL+NS LK FPGKLKS+WSGPF + V P+GAV L GD F VNG
Sbjct: 284 IITKDFQVGDQVLLFNSLLKFFPGKLKSRWSGPFCITEVRPYGAVTLAGKSGD--FTVNG 341
Query: 1139 QRVKPYLGGDLPKERVGLVLKDL 1161
QR+K YL + + + L++L
Sbjct: 342 QRLKKYLADQILPDVTSVHLQEL 364
>gb|AAT81692.1| putative integrase [Oryza sativa (japonica cultivar-group)]
Length = 562
Score = 343 bits (880), Expect = 2e-92
Identities = 164/306 (53%), Positives = 214/306 (69%), Gaps = 1/306 (0%)
Query: 827 LFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFLHILV 886
+++D +F+ RC CQR G I+ R+ MPLT ++VE FD WGIDFMGPFP S + +ILV
Sbjct: 1 MYEDSKEFIRRCTSCQRQGGITTRDAMPLTYNLQVEIFDVWGIDFMGPFPKSRNCEYILV 60
Query: 887 CVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKY 946
VDYV+KWVEA+PC A +A+ + IF RFGTPR++ISDGG HF + ++L++
Sbjct: 61 AVDYVSKWVEAMPCSAAEARHAKKMFTEFIFPRFGTPRMVISDGGSHFIDKTFRDLLREM 120
Query: 947 NIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLG 1006
+H VATPYHPQTS Q E SN+Q+K IL+KT+ W +L DALWAYRTA+KT +G
Sbjct: 121 GAKHNVATPYHPQTSGQAETSNKQIKNILQKTVNKMGTGWKDRLPDALWAYRTAYKTPIG 180
Query: 1007 FSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALI 1066
SPYQ+VYGK C LPVELEH+AYWAI+ N D AG+ R +++ ELEE R +AY NA I
Sbjct: 181 MSPYQIVYGKPCRLPVELEHRAYWAIRNWNMDFEGAGEWRKMQIAELEEWREKAYHNAKI 240
Query: 1067 YKARTKRYHDKNLVSRDINSGQLVLLYNSRLKLF-PGKLKSKWSGPFLVKSVLPHGAVEL 1125
YK RTKR+H+K + + G VL++NSR+KLF GKL+SKW GPF V + HGA+ L
Sbjct: 241 YKERTKRWHEKRIKIKKFKPGDKVLMFNSRVKLFGHGKLRSKWEGPFDVINTSSHGAITL 300
Query: 1126 MTPEGD 1131
G+
Sbjct: 301 CDDLGN 306
>gb|AAV43951.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 963
Score = 342 bits (876), Expect = 6e-92
Identities = 216/546 (39%), Positives = 295/546 (53%), Gaps = 59/546 (10%)
Query: 84 PVYAKFMKEMLTGRRKPKDDENISLSENCSAILQRKLPPKLKDPGAFTIPCSIGPIDIGR 143
P+ +F++E + DE + +E S +++ P++ IPC + D+
Sbjct: 375 PMELRFLRETIRELTTIMSDEWLREAELSSEVIRINTAPRI-------IPCHLEGNDVS- 426
Query: 144 ALCDLGASINLMPLSM-MKKIGGGEPKPTRMTLTLADRSISYPFGVLEDVLVKVNDLIFP 202
L NL+ S + PT +I FG+++DV V D
Sbjct: 427 ILYSPTVGANLVSGSFAFAYLSDKAVTPTNKFFKHPSGNIIKRFGIMQDVPVCFEDKEAI 486
Query: 203 GDFVILDMAEDEDMPLILGRPFLATGRALIDVEMGQLMLRFHNEQVVLNIFEAMKHRAEN 262
DF + ++ +D +++G P EQ+++N
Sbjct: 487 LDFHVFEI---QDFDILIGLPI---------------------EQLLINT---------- 512
Query: 263 PKCYRIDVIDEIVEDDSRAPQPTQPLERTIVNSLESCDLDEDLEVKECIKQLEASKQELG 322
R+D + +I ++ P + + L + E++ + EA ++
Sbjct: 513 ---PRLDSL-KITLGETEFSIPFSRARIVLTDPLPEIESTEEVIAVPPHESPEALLEDEV 568
Query: 323 PVKIEEILGEISKGPQSSRKEEEKNP----ELKELPSNLKYVFLSKDTSKPAIISSTLTL 378
P I+E E G E P ELK LP +L Y FL D P IIS L
Sbjct: 569 PDFIKE---EADPGETLDLPIMEPPPWPPLELKPLPPSLHYAFLHHDREAPVIISDKLFE 625
Query: 379 LEEEKLMRVLRENQGALGWKISDLKGISPAYCMHRIHMEAEYKPVVQPQRRLNPTMKEVV 438
E ++L+ VL ++ LG+ + DLKGI+P C+HRI ++ E P +PQRRLN M+EVV
Sbjct: 626 DETQRLLAVLEKHCSVLGYSLQDLKGINPVLCIHRIPIDPESTPSREPQRRLNNAMREVV 685
Query: 439 KKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMCIDYR 498
KKEVLKLL+AG+IYP+ S WVSPV VVPKKGG+ VVAN +NELIP RTVT WRMCIDYR
Sbjct: 686 KKEVLKLLHAGIIYPVPYSEWVSPVQVVPKKGGIMVVANAQNELIPQRTVTEWRMCIDYR 745
Query: 499 RLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGVF 558
+LN AT+KDHFPLPF+D+M+ERLA +F+CFLDGYS Y+QI + PEDQ KT FTCP+G +
Sbjct: 746 KLNKATKKDHFPLPFIDEMLERLANHSFFCFLDGYSGYHQIPIHPEDQSKTTFTCPYGTY 805
Query: 559 AYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSAFVLGQRKNKFFHAIYYASK 618
AYRRM FGLC APA+FQRCM+SIFSDMIE +EVFMDDF + F H + K
Sbjct: 806 AYRRMSFGLCNAPASFQRCMMSIFSDMIEYIMEVFMDDFLVY-----GKTFGHYLQNLDK 860
Query: 619 VLNENQ 624
VL Q
Sbjct: 861 VLQRCQ 866
>gb|AAV43847.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1005
Score = 342 bits (876), Expect = 6e-92
Identities = 216/546 (39%), Positives = 295/546 (53%), Gaps = 59/546 (10%)
Query: 84 PVYAKFMKEMLTGRRKPKDDENISLSENCSAILQRKLPPKLKDPGAFTIPCSIGPIDIGR 143
P+ +F++E + DE + +E S +++ P++ IPC + D+
Sbjct: 380 PMELRFLRETIRELTTIMSDEWLREAELSSEVIRINTAPRI-------IPCHLEGNDVS- 431
Query: 144 ALCDLGASINLMPLSM-MKKIGGGEPKPTRMTLTLADRSISYPFGVLEDVLVKVNDLIFP 202
L NL+ S + PT +I FG+++DV V D
Sbjct: 432 ILYSPTVGANLVSGSFAFAYLSDKAVTPTNKFFKHPSGNIIKRFGIMQDVPVCFEDKEAI 491
Query: 203 GDFVILDMAEDEDMPLILGRPFLATGRALIDVEMGQLMLRFHNEQVVLNIFEAMKHRAEN 262
DF + ++ +D +++G P EQ+++N
Sbjct: 492 LDFHVFEI---QDFDILIGLPI---------------------EQLLINT---------- 517
Query: 263 PKCYRIDVIDEIVEDDSRAPQPTQPLERTIVNSLESCDLDEDLEVKECIKQLEASKQELG 322
R+D + +I ++ P + + L + E++ + EA ++
Sbjct: 518 ---PRLDSL-KITLGETEFSIPFSRARIVLTDPLPEIESTEEVIAVPPHESPEALLEDEV 573
Query: 323 PVKIEEILGEISKGPQSSRKEEEKNP----ELKELPSNLKYVFLSKDTSKPAIISSTLTL 378
P I+E E G E P ELK LP +L Y FL D P IIS L
Sbjct: 574 PDFIKE---EADPGETLDLPIMEPPPWPPLELKPLPPSLHYAFLHHDREAPVIISDKLFE 630
Query: 379 LEEEKLMRVLRENQGALGWKISDLKGISPAYCMHRIHMEAEYKPVVQPQRRLNPTMKEVV 438
E ++L+ VL ++ LG+ + DLKGI+P C+HRI ++ E P +PQRRLN M+EVV
Sbjct: 631 DETQRLLAVLEKHCSVLGYSLQDLKGINPVLCIHRIPIDPESTPSREPQRRLNNAMREVV 690
Query: 439 KKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMCIDYR 498
KKEVLKLL+AG+IYP+ S WVSPV VVPKKGG+ VVAN +NELIP RTVT WRMCIDYR
Sbjct: 691 KKEVLKLLHAGIIYPVPYSEWVSPVQVVPKKGGIMVVANAQNELIPQRTVTEWRMCIDYR 750
Query: 499 RLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGVF 558
+LN AT+KDHFPLPF+D+M+ERLA +F+CFLDGYS Y+QI + PEDQ KT FTCP+G +
Sbjct: 751 KLNKATKKDHFPLPFIDEMLERLANHSFFCFLDGYSGYHQIPIHPEDQSKTTFTCPYGTY 810
Query: 559 AYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSAFVLGQRKNKFFHAIYYASK 618
AYRRM FGLC APA+FQRCM+SIFSDMIE +EVFMDDF + F H + K
Sbjct: 811 AYRRMSFGLCNAPASFQRCMMSIFSDMIEYIMEVFMDDFLVY-----GKTFGHYLQNLDK 865
Query: 619 VLNENQ 624
VL Q
Sbjct: 866 VLQRCQ 871
>ref|XP_475106.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|47777457|gb|AAT38090.1| unknown protein [Oryza sativa
(japonica cultivar-group)] gi|57863879|gb|AAW56919.1|
unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 903
Score = 332 bits (852), Expect = 3e-89
Identities = 188/451 (41%), Positives = 251/451 (54%), Gaps = 79/451 (17%)
Query: 585 MIEKNIEVFMDDFSAFVLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKF 644
++ K++ DD S VLGQ K++ HAI YASK L Q
Sbjct: 529 LLAKDVPFDFDDES--VLGQTKDRKHHAIAYASKTLTGAQ-------------------- 566
Query: 645 RSYLIGSKVIVFTDHAALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLS 704
L Y T+ + LL + + +F L + K E + D+L
Sbjct: 567 -----------------LNYATTEKE----LLALVFAIDKFRLYLVGAK--ELPINDYLR 603
Query: 705 RLDNKEVTKKKGAIMAEFPDEKLFAIGER-PWFADMANFK-AGNIVPDDFEYHQRKKFFK 762
D L + + PW+A + NF AG++ P + +K+
Sbjct: 604 -------------------DNMLLKVTDSDPWYATIVNFMVAGHVPPGE----NKKRLIY 640
Query: 763 DANHYVWDDPYLFKVSTDGLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGF 822
++ ++WD PYL++V +D +E I+ CH++ YGGH+ RT AK+ QSGF
Sbjct: 641 ESRRHLWDAPYLYRVCSD---------DEGMKIIKKCHAALYGGHYGAFRTHAKIWQSGF 691
Query: 823 WWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMGPFPSSYSFL 882
+WP+++ D +F+ RC CQ+ G I+ R+ MPLT ++VE FD WGIDFMGPFP SY
Sbjct: 692 FWPSMYDDTKEFIRRCTSCQKHGGITARDAMPLTYNLQVELFDVWGIDFMGPFPKSYDCE 751
Query: 883 HILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENV 942
+ILV VDYV+KWVEA+PC A DAK + IF RF T R++ISDGG HF + N
Sbjct: 752 YILVAVDYVSKWVEAMPCRAADAKHARWMFHEIIFPRFRTLRMVISDGGSHFVDKTFRNF 811
Query: 943 LKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFK 1002
LK+ RH ATPYHPQTS Q E SN+Q+K IL+KTI K W KL DALWAYRTA+K
Sbjct: 812 LKELGARHNSATPYHPQTSGQAETSNKQIKNILQKTINEMGKAWKNKLPDALWAYRTAYK 871
Query: 1003 THLGFSPYQLVYGKACHLPVELEHKAYWAIK 1033
T +G SPYQLVYGK CHLPVELEH+A+WAI+
Sbjct: 872 TPVGMSPYQLVYGKTCHLPVELEHRAHWAIR 902
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,012,924,130
Number of Sequences: 2540612
Number of extensions: 89582839
Number of successful extensions: 262792
Number of sequences better than 10.0: 35013
Number of HSP's better than 10.0 without gapping: 3159
Number of HSP's successfully gapped in prelim test: 31854
Number of HSP's that attempted gapping in prelim test: 244975
Number of HSP's gapped (non-prelim): 41765
length of query: 1161
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1022
effective length of database: 510,215,326
effective search space: 521440063172
effective search space used: 521440063172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)
Medicago: description of AC148291.6