BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148289.15 + phase: 0 /pseudo
         (273 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAT38726.1| putative gag-pol polyprotein [Solanum demissum]         37  0.60
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...    35  2.3
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva...    35  2.3
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap...    35  2.3
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica...    35  2.3
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult...    35  2.3
emb|CAB42059.1| Tpv2-1c [Phaseolus vulgaris]                           33  6.6
gb|AAT38797.1| putative polyprotein [Solanum demissum]                 33  8.6

>gb|AAT38726.1| putative gag-pol polyprotein [Solanum demissum]
          Length = 532

 Score = 37.0 bits (84), Expect = 0.60
 Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 8   QKYIGELMLEKFEMKDCNSISNPSETNSKLV-EC 40
           QK  G+ +L++F+MK+CNS+S P +   KL+ EC
Sbjct: 337 QKKYGQDILDRFQMKNCNSVSTPMDKGLKLIKEC 370


>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
            cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
            Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
            cultivar-group)]
          Length = 2145

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 1/44 (2%)

Query: 5    MHQQKYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEKWNQ 48
            +HQ KY  EL L+KF+M DC  I+ P  T S L    + E+ +Q
Sbjct: 1529 VHQTKYSKEL-LKKFDMADCKPIATPMATTSSLGPDEDGEEVDQ 1571


>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
            gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
            (japonica cultivar-group)]
          Length = 1877

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 1/44 (2%)

Query: 5    MHQQKYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEKWNQ 48
            +HQ KY  EL L+KF+M DC  I+ P  T S L    + E+ +Q
Sbjct: 1611 VHQTKYSKEL-LKKFDMADCKPIATPMATTSSLGPDEDGEEVDQ 1653


>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
            [Oryza sativa (japonica cultivar-group)]
          Length = 1969

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 1/44 (2%)

Query: 5    MHQQKYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEKWNQ 48
            +HQ KY  EL L+KF+M DC  I+ P  T S L    + E+ +Q
Sbjct: 1529 VHQTKYSKEL-LKKFDMADCKPIATPMATTSSLGPDEDGEEVDQ 1571


>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
          Length = 1410

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 1/44 (2%)

Query: 5    MHQQKYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEKWNQ 48
            +HQ KY  EL L+KF+M DC  I+ P  T S L    + E+ +Q
Sbjct: 1144 VHQTKYSKEL-LKKFDMADCKPIATPMATTSSLGPDEDGEEVDQ 1186


>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1799

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 1/44 (2%)

Query: 5    MHQQKYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEKWNQ 48
            +HQ KY  EL L+KF+M DC  I+ P  T S L    + E+ +Q
Sbjct: 1533 VHQTKYSKEL-LKKFDMADCKPIATPMATTSSLGPDEDGEEVDQ 1575


>emb|CAB42059.1| Tpv2-1c [Phaseolus vulgaris]
          Length = 374

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 15/37 (40%), Positives = 26/37 (69%), Gaps = 1/37 (2%)

Query: 1   TSMVMHQQKYIGELMLEKFEMKDCNSISNPSETNSKL 37
           T + + Q+KY  E+ L+K++M++CN +S P E  +KL
Sbjct: 105 TGIFVSQEKYAKEI-LKKYKMENCNPVSIPMEPGAKL 140


>gb|AAT38797.1| putative polyprotein [Solanum demissum]
          Length = 1758

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 7   QQKYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEK 45
           QQKYI ++ L +F+M+DC  +S P  T  KL +  + +K
Sbjct: 944 QQKYILDI-LNRFKMQDCKPVSTPISTGVKLGKDEDSKK 981


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.358    0.156    0.552 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,099,096
Number of Sequences: 2540612
Number of extensions: 11400459
Number of successful extensions: 44375
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 44369
Number of HSP's gapped (non-prelim): 13
length of query: 273
length of database: 863,360,394
effective HSP length: 126
effective length of query: 147
effective length of database: 543,243,282
effective search space: 79856762454
effective search space used: 79856762454
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 74 (33.1 bits)